Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003825
(816 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_002686341.1| PREDICTED: histocompatibility 28-like [Bos t... 282 2e-76
Alignment gi|XP_877215.3| PREDICTED: histocompatibility 28-like isoform 2... 282 2e-76
Alignment gi|XP_001789405.1| PREDICTED: interferon-induced protein 44-lik... 162 4e-40
>ref|XP_002686341.1| PREDICTED: histocompatibility 28-like [Bos taurus].
Length = 449
Score = 282 bits (722), Expect = 2e-76
Identities = 145/227 (63%), Positives = 176/227 (77%), Gaps = 1/227 (0%)
Frame = +1
Query: 139 MAVTTCLTWMQEKHLKTYFGEEQFSLLYKASVHGFSKEKLLDRCSHQGSILTVIYNEYHI 318
M V T LTWMQEK L+ YFGE+QFSLLYKASVHGFS ++LL CS+QG LTVIY+E I
Sbjct: 1 MEVATRLTWMQEKKLQNYFGEKQFSLLYKASVHGFSTDRLLQICSNQGPTLTVIYSEDQI 60
Query: 319 LGAYMPGGYLGELDISITLFAFQETEISKCEIGPLNPCLLFSGN-NINSEFIINLEKKAV 495
+GAYM Y GE + I +F FQET I++C++GP +LF N + N E I+L+ K +
Sbjct: 61 VGAYMQKDY-GEGNYLIAVFVFQETTITECKVGPFKLPMLFDKNVDGNLEVSIHLKDKTM 119
Query: 496 VTSVTTMEKLGLPQCCMSFKECEVFRCEDLLDKRSMDGIIELKESLMSAIRTYKPYGGLV 675
+ MEKLGL Q +SF++CEVFRCEDLLDKR M G+ ELKESL+ AIR Y PYGGLV
Sbjct: 120 YFNKNAMEKLGLSQIYISFQDCEVFRCEDLLDKRKMSGLTELKESLLCAIRNYIPYGGLV 179
Query: 676 HQIQILLLGPIGAGKSSFFNAVKSVFRGHVTNQALVGSDITGVSEKY 816
H+++ILLLGP+GAGKSSFFN+V+S+FRGHVTNQALVGSD TG SEKY
Sbjct: 180 HKVRILLLGPVGAGKSSFFNSVRSIFRGHVTNQALVGSDPTGTSEKY 226
>ref|XP_877215.3| PREDICTED: histocompatibility 28-like isoform 2 [Bos taurus].
Length = 449
Score = 282 bits (722), Expect = 2e-76
Identities = 145/227 (63%), Positives = 176/227 (77%), Gaps = 1/227 (0%)
Frame = +1
Query: 139 MAVTTCLTWMQEKHLKTYFGEEQFSLLYKASVHGFSKEKLLDRCSHQGSILTVIYNEYHI 318
M V T LTWMQEK L+ YFGE+QFSLLYKASVHGFS ++LL CS+QG LTVIY+E I
Sbjct: 1 MEVATRLTWMQEKKLQNYFGEKQFSLLYKASVHGFSTDRLLQICSNQGPTLTVIYSEDQI 60
Query: 319 LGAYMPGGYLGELDISITLFAFQETEISKCEIGPLNPCLLFSGN-NINSEFIINLEKKAV 495
+GAYM Y GE + I +F FQET I++C++GP +LF N + N E I+L+ K +
Sbjct: 61 VGAYMQKDY-GEGNYLIAVFVFQETTITECKVGPFKLPMLFDKNVDGNLEVSIHLKDKTM 119
Query: 496 VTSVTTMEKLGLPQCCMSFKECEVFRCEDLLDKRSMDGIIELKESLMSAIRTYKPYGGLV 675
+ MEKLGL Q +SF++CEVFRCEDLLDKR M G+ ELKESL+ AIR Y PYGGLV
Sbjct: 120 YFNKNAMEKLGLSQIYISFQDCEVFRCEDLLDKRKMSGLTELKESLLCAIRNYIPYGGLV 179
Query: 676 HQIQILLLGPIGAGKSSFFNAVKSVFRGHVTNQALVGSDITGVSEKY 816
H+++ILLLGP+GAGKSSFFN+V+S+FRGHVTNQALVGSD TG SEKY
Sbjct: 180 HKVRILLLGPVGAGKSSFFNSVRSIFRGHVTNQALVGSDPTGTSEKY 226
>ref|XP_001789405.1| PREDICTED: interferon-induced protein 44-like [Bos taurus].
Length = 441
Score = 162 bits (409), Expect = 4e-40
Identities = 96/245 (39%), Positives = 141/245 (57%), Gaps = 19/245 (7%)
Frame = +1
Query: 139 MAVTTCLTWMQEKHLKTYFGEEQFSLLYKASVHGFSKEKLLDRCSHQGSILTVIYNEYHI 318
MAVTT LTW +E+ + G LLYK+SVHG S ++ +RC QG I+TVIY+ I
Sbjct: 1 MAVTTTLTWNEERSFQKLLGNVSLRLLYKSSVHGRSTVEMQNRCRCQGPIVTVIYHSNSI 60
Query: 319 LGAYMPGGYLGELDISIT------LFAFQETEISKCEIGPLNPCLLFSGNNI-------- 456
G + G + ++ S T F+ Q+ E + + LN + F NN+
Sbjct: 61 FGVFTLG-HSSDMSESFTEPNASFFFSLQKNETMEMKTVVLNSTVTFYRNNLTFCFSSYY 119
Query: 457 NSEFIINLEKKAVVTSVTTMEKLGLPQCCMS-FKECEVFRCEDLLDKRSMDGII----EL 621
N + +N E+ + E+L + S F ECEVFR E + D+ I +
Sbjct: 120 NQKLSLNFEESRIYIPRIFEEELIVKSHAKSTFLECEVFRVEGIKDEAGYINRITRATQH 179
Query: 622 KESLMSAIRTYKPYGGLVHQIQILLLGPIGAGKSSFFNAVKSVFRGHVTNQALVGSDITG 801
+ SL++ +R Y PY LV +I+ILLLGP+G+GKSSFFN+VKS+F+GH+T QA+VGSD+T
Sbjct: 180 RNSLLADVRAYSPYADLVSEIRILLLGPVGSGKSSFFNSVKSIFQGHLTRQAIVGSDVTS 239
Query: 802 VSEKY 816
++E+Y
Sbjct: 240 ITEQY 244
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 29,506,922
Number of extensions: 733472
Number of successful extensions: 1987
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 1979
Number of HSP's successfully gapped: 3
Length of query: 272
Length of database: 17,681,374
Length adjustment: 101
Effective length of query: 171
Effective length of database: 14,339,486
Effective search space: 2452052106
Effective search space used: 2452052106
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 33 (17.3 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003825
(816 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_547319.2| PREDICTED: similar to interferon-induced, hepat... 233 2e-61
Alignment gi|XP_537104.2| PREDICTED: similar to histocompatibility 28 [Ca... 140 1e-33
>ref|XP_547319.2| PREDICTED: similar to interferon-induced, hepatitis C-associated
microtubular aggregat [Canis familiaris].
Length = 672
Score = 233 bits (594), Expect = 2e-61
Identities = 131/243 (53%), Positives = 169/243 (69%), Gaps = 17/243 (6%)
Frame = +1
Query: 139 MAVTTCLTWMQEKHLKTYFGEEQFSLLYKASVHGFSKEKLLDRCSHQGSILTVIYNEYHI 318
MAVTTCLT MQEK L++ FG ++F+LLYKASVH FS + RC++QG + VIY+ + I
Sbjct: 1 MAVTTCLTKMQEKKLQSCFGGKRFTLLYKASVHDFSGYNVYKRCNNQGPTVMVIYSGHDI 60
Query: 319 LGAYMPGGYLGELD-ISITLFAFQETEISKCEIGPLNPCL---LFSGNNINSEFIINLEK 486
GAY+ Y D + I LFAFQ+ EIS+C+IG +P L+ +N SEF++NL+
Sbjct: 61 FGAYIKDSYQEYGDRVPIVLFAFQKNEISECKIGAYSPSTFLCLYKEDNC-SEFLLNLDG 119
Query: 487 KAVVTSVTTMEKLGLP-------------QCCMSFKECEVFRCEDLLDKRSMDGIIELKE 627
K V + T+EKL L +S KECEVFRCEDLLDKR+M+ I +L +
Sbjct: 120 KKVTMKLDTIEKLQLKVQVSNERHQKHQKDQIISVKECEVFRCEDLLDKRNMEEITQLHK 179
Query: 628 SLMSAIRTYKPYGGLVHQIQILLLGPIGAGKSSFFNAVKSVFRGHVTNQALVGSDITGVS 807
SL+ I++Y+PY LV QI+ILLLGP GAGKSSFFN+VKSVFRG+VT+QALVGSD GVS
Sbjct: 180 SLLFDIKSYRPYRDLVRQIRILLLGPTGAGKSSFFNSVKSVFRGYVTHQALVGSDAAGVS 239
Query: 808 EKY 816
+KY
Sbjct: 240 DKY 242
>ref|XP_537104.2| PREDICTED: similar to histocompatibility 28 [Canis familiaris].
Length = 565
Score = 140 bits (353), Expect = 1e-33
Identities = 99/287 (34%), Positives = 154/287 (53%), Gaps = 17/287 (5%)
Frame = +1
Query: 7 FPGVSRSLKIAEKFSAPSCLPNCPNRAATLSFSPYIDSTNRLRSMAVTTCLTWMQEKHLK 186
F G+ + L + FS L NRAA + + +R R+MAVTT LTW +EK L+
Sbjct: 50 FRGLEKKLSVEPSFSTLWLL-EASNRAANQTLKLHPTLKSRYRTMAVTTRLTWNEEKRLQ 108
Query: 187 TYFGEEQFSLLYKASVHGFSKEKLLDRCSHQGSILTVIYNEYHILGAYMPGGYLGELD-- 360
G LLYK+SVH +L+RC HQG +T+IY + +M Y + D
Sbjct: 109 KLLGNVSLRLLYKSSVHQSDIFYMLERCIHQGPTVTIIYFSEVLWVVFMLEHYPEKSDKL 168
Query: 361 ------ISITLFAFQETEIS---KCEIGPLNPCLLFSGNNINSEFIINLEKKAVVTSVTT 513
+ + +E+EI+ + E+ ++ L F EF ++L K A++++ T+
Sbjct: 169 TRPNPSLKFSFRKDRESEITGILETEMKIVSKQLEFYFFG-KKEFSVDLGK-AILSTYTS 226
Query: 514 MEKLGLPQCCMS--FKECEVFRCEDLLDKRS----MDGIIELKESLMSAIRTYKPYGGLV 675
+ C + F ECEVFR E + D + + ++ + L++ +R YKP ++
Sbjct: 227 KDNDSGQNFCHNTKFLECEVFRVEGIKDDTNYISKITRAMKYRNPLVAELRAYKPCVHII 286
Query: 676 HQIQILLLGPIGAGKSSFFNAVKSVFRGHVTNQALVGSDITGVSEKY 816
+I+ILLLGP G+GKSSF N+VKS+FRG T A VG+DIT ++E+Y
Sbjct: 287 SEIRILLLGPTGSGKSSFINSVKSIFRGQRTRHAPVGADITSITEQY 333
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 30,823,677
Number of extensions: 752701
Number of successful extensions: 1845
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 1840
Number of HSP's successfully gapped: 2
Length of query: 272
Length of database: 18,874,504
Length adjustment: 101
Effective length of query: 171
Effective length of database: 15,507,568
Effective search space: 2651794128
Effective search space used: 2651794128
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003825
(816 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_006408.3| interferon-induced protein 44 [Homo sapiens]. 247 1e-65
Alignment gi|NP_006811.2| interferon-induced protein 44-like [Homo sapien... 156 2e-38
>ref|NP_006408.3| interferon-induced protein 44 [Homo sapiens].
Length = 444
Score = 247 bits (630), Expect = 1e-65
Identities = 131/231 (56%), Positives = 169/231 (73%), Gaps = 5/231 (2%)
Frame = +1
Query: 139 MAVTTCLTWMQEKHLKTYFGEEQFSLLYKASVHGFSKEKLLDRCSHQGSILTVIYNEYHI 318
MAVTT LTW+ EK L+ +FG ++ SLLYK SVHGF LLDRC +QG LTVIY+E HI
Sbjct: 1 MAVTTRLTWLHEKILQNHFGGKRLSLLYKGSVHGFRNGVLLDRCCNQGPTLTVIYSEDHI 60
Query: 319 LGAYMPGGYLGELDISITLFAFQETEISKCEIGPLNPCLLFSGN----NINSEFIINLEK 486
+GAY Y SI LFA Q+T+IS+ ++G P LF + N + F I+
Sbjct: 61 IGAYAEESYQEGKYASIILFALQDTKISEWKLGLCTPETLFCCDVTKYNSPTNFQIDGRN 120
Query: 487 KAVVTSVTTMEKLGLPQ-CCMSFKECEVFRCEDLLDKRSMDGIIELKESLMSAIRTYKPY 663
+ V+ + TME LGL Q C +S ++ EVFRCED LD+R + G+IEL++SL+SA+RTY+PY
Sbjct: 121 RKVIMDLKTMENLGLAQNCTISIQDYEVFRCEDSLDERKIKGVIELRKSLLSALRTYEPY 180
Query: 664 GGLVHQIQILLLGPIGAGKSSFFNAVKSVFRGHVTNQALVGSDITGVSEKY 816
G LV QI+ILLLGPIGAGKSSFFN+V+SVF+GHVT+QALVG++ TG+SEKY
Sbjct: 181 GSLVQQIRILLLGPIGAGKSSFFNSVRSVFQGHVTHQALVGTNTTGISEKY 231
>ref|NP_006811.2| interferon-induced protein 44-like [Homo sapiens].
Length = 452
Score = 156 bits (395), Expect = 2e-38
Identities = 96/246 (39%), Positives = 140/246 (56%), Gaps = 20/246 (8%)
Frame = +1
Query: 139 MAVTTCLTWMQEKHLKTYFGEEQFSLLYKASVHGFSKEKLLDRCSHQGSILTVIYNEYHI 318
M VTT LTW E HL+ G SLLYK+SVHG S E +++RCS QG +T+ Y +Y++
Sbjct: 1 MEVTTRLTWNDENHLRKLLGNVSLSLLYKSSVHGGSIEDMVERCSRQGCTITMAYIDYNM 60
Query: 319 LGAYMPGGYLGELDISIT-----LFAFQETEISKCEIGPLNPCLLFSGNNINSEFIINLE 483
+ A+M G Y+ + S F+ Q+ K + + LL + I E ++
Sbjct: 61 IVAFMLGNYINLHESSTEPNDSLWFSLQK----KNDTTEIETLLLNTAPKIIDEQLVCRL 116
Query: 484 KKAVVTSVTTMEKLGLPQCCM-----------SFKECEVFRCEDLLDKRS-MDGIIELKE 627
K + + K+ L + + ECEVFR E + D + II+ +E
Sbjct: 117 SKTDIFIICRDNKIYLDKMITRNLKLRFYGHRQYLECEVFRVEGIKDNLDDIKRIIKARE 176
Query: 628 S---LMSAIRTYKPYGGLVHQIQILLLGPIGAGKSSFFNAVKSVFRGHVTNQALVGSDIT 798
L++ IR Y+PY LV +I+ILL+GP+G+GKSSFFN+VKS+F GHVT QA+VGSDIT
Sbjct: 177 HRNRLLADIRDYRPYADLVSEIRILLVGPVGSGKSSFFNSVKSIFHGHVTGQAVVGSDIT 236
Query: 799 GVSEKY 816
++E+Y
Sbjct: 237 SITERY 242
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 30,401,736
Number of extensions: 749702
Number of successful extensions: 1970
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 1966
Number of HSP's successfully gapped: 2
Length of query: 272
Length of database: 18,297,164
Length adjustment: 101
Effective length of query: 171
Effective length of database: 14,967,800
Effective search space: 2559493800
Effective search space used: 2559493800
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003825
(816 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_598632.2| interferon-induced protein 44 [Mus musculus]. 218 3e-57
Alignment gi|NP_112735.1| interferon-induced protein 44-like [Mus musculu... 75 5e-14
>ref|NP_598632.2| interferon-induced protein 44 [Mus musculus].
Length = 422
Score = 218 bits (556), Expect = 3e-57
Identities = 117/228 (51%), Positives = 155/228 (67%), Gaps = 2/228 (0%)
Frame = +1
Query: 139 MAVTTCLTWMQEKHLKTYFGEEQFSLLYKASVHGFSKEKLLDRCSHQGSILTVIYNEYHI 318
MA+ T LTW QEK L+ YFG ++F LLYKASV FS + LL C +QG + V+Y+E +
Sbjct: 1 MAMRTRLTWQQEKCLQNYFGGKRFCLLYKASVQKFSHQNLLCTCENQGPTMIVVYSEKCV 60
Query: 319 LGAYMPGGYLGELDISITLFAFQETEISKCEIGPLNPCLLFSGNNINSEFIINLEKKAVV 498
+G Y+ G+ G+ D+SIT+FA QET S C GP +P LLF N +F I L++KAV+
Sbjct: 61 IGMYLKEGFQGK-DVSITIFALQETGFSLCAKGPDSPYLLFHKRKTN-DFSILLDEKAVI 118
Query: 499 TS--VTTMEKLGLPQCCMSFKECEVFRCEDLLDKRSMDGIIELKESLMSAIRTYKPYGGL 672
S + M +L + +ECE FRCE+LLD+R GI L +L+ A+R YKPYG L
Sbjct: 119 VSSAICKMLQLTARNNVIPIQECEAFRCEELLDERKTRGIAVLHSNLLQALRDYKPYGDL 178
Query: 673 VHQIQILLLGPIGAGKSSFFNAVKSVFRGHVTNQALVGSDITGVSEKY 816
V Q ++LLLGPIGAGKSSF N+VKSVF+G +T+Q LVG D G+S+KY
Sbjct: 179 VQQTRVLLLGPIGAGKSSFVNSVKSVFKGSITHQILVGCDEDGISDKY 226
>ref|NP_112735.1| interferon-induced protein 44-like [Mus musculus].
Length = 449
Score = 75.5 bits (184), Expect = 5e-14
Identities = 70/249 (28%), Positives = 116/249 (46%), Gaps = 23/249 (9%)
Frame = +1
Query: 139 MAVTTCLTWMQEKHLKTYFGEEQFSLLYKASVHGFSKEKLLDRCSHQGSILTVIYNEYH- 315
M VT LTW++EK L+ G +LLY++S H ++ + S QGS +TV + E
Sbjct: 1 MKVTARLTWIEEKILEKLLGNASLTLLYQSSAHKNCVSEMTQKYSLQGSTMTVFHLEKDV 60
Query: 316 ILGAYMPGGY---LGELDISITLFAFQETEISKCEIGPLNPCLLFSGNNINSEFIINLEK 486
++G ++ + + E + F+ + S LN ++ ++SE +I
Sbjct: 61 VVGVFILENFPRLVSEKPCTCAWFSLKRNNSSGISALFLNTKVI-----VDSEELIIFSL 115
Query: 487 KAVVTSVTTME--KLGLPQCCMSF-----------KECEVFRCEDLLDK----RSMDGII 615
+ SVT + L L M+ ECE+FR + + + M
Sbjct: 116 DGLSLSVTPLRGFTLALNDTVMNGLELNLGHGFLPVECEIFRVDGIKKNPSFIKKMVTAE 175
Query: 616 ELKESLMSAIRTYKPYGGLVHQIQILLLGPIGAGKSSFFNAV-KSVFRGHVTNQA-LVGS 789
+ + L+SA+R YKPY LV + L GP +S F+ KS F+GH+T QA GS
Sbjct: 176 QHRGKLLSALRAYKPYKDLVSEGSYSLGGPSRLRESRAFSTQWKSAFQGHLTRQAHCGGS 235
Query: 790 DITGVSEKY 816
D + ++++Y
Sbjct: 236 DESSITKQY 244
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 25,911,029
Number of extensions: 636666
Number of successful extensions: 1789
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 1784
Number of HSP's successfully gapped: 2
Length of query: 272
Length of database: 15,617,559
Length adjustment: 100
Effective length of query: 172
Effective length of database: 12,613,959
Effective search space: 2169600948
Effective search space used: 2169600948
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 33 (17.3 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003825
(816 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_003127963.1| PREDICTED: interferon-induced protein 44 [Su... 456 e-129
Alignment gi|XP_003127967.1| PREDICTED: interferon-induced protein 44-lik... 155 2e-38
>ref|XP_003127963.1| PREDICTED: interferon-induced protein 44 [Sus scrofa].
Length = 428
Score = 456 bits (1172), Expect = e-129
Identities = 224/226 (99%), Positives = 226/226 (100%)
Frame = +1
Query: 139 MAVTTCLTWMQEKHLKTYFGEEQFSLLYKASVHGFSKEKLLDRCSHQGSILTVIYNEYHI 318
MAVTTCLTWMQEKHLKTYFG+EQFSLLYKASVHGFSKEKLLDRCSHQGSILTV+YNEYHI
Sbjct: 1 MAVTTCLTWMQEKHLKTYFGKEQFSLLYKASVHGFSKEKLLDRCSHQGSILTVVYNEYHI 60
Query: 319 LGAYMPGGYLGELDISITLFAFQETEISKCEIGPLNPCLLFSGNNINSEFIINLEKKAVV 498
LGAYMPGGYLGELDISITLFAFQETEISKCEIGPLNPCLLFSGNNINSEFIINLEKKAVV
Sbjct: 61 LGAYMPGGYLGELDISITLFAFQETEISKCEIGPLNPCLLFSGNNINSEFIINLEKKAVV 120
Query: 499 TSVTTMEKLGLPQCCMSFKECEVFRCEDLLDKRSMDGIIELKESLMSAIRTYKPYGGLVH 678
TSVTTMEKLGLPQCCMSFKECEVFRCEDLLDKRSMDGIIELKESLMSAIRTYKPYGGLVH
Sbjct: 121 TSVTTMEKLGLPQCCMSFKECEVFRCEDLLDKRSMDGIIELKESLMSAIRTYKPYGGLVH 180
Query: 679 QIQILLLGPIGAGKSSFFNAVKSVFRGHVTNQALVGSDITGVSEKY 816
QIQILLLGPIGAGKSSFFNAVKSVFRGHVTNQALVGSDITGVSEKY
Sbjct: 181 QIQILLLGPIGAGKSSFFNAVKSVFRGHVTNQALVGSDITGVSEKY 226
>ref|XP_003127967.1| PREDICTED: interferon-induced protein 44-like [Sus scrofa].
Length = 489
Score = 155 bits (393), Expect = 2e-38
Identities = 104/282 (36%), Positives = 154/282 (54%), Gaps = 18/282 (6%)
Frame = +1
Query: 25 SLKIAEKFSA-PSCLPNCP-NRAATLSFSPYIDSTNRLRSMAVTTCLTWMQEKHLKTYFG 198
SLK A SA PS C N++ S +S NR +M VT LTW +EK L+ G
Sbjct: 11 SLKQAALISAEPSPNRGCSINQSREYSIYAPSNSENRYGTMEVTPRLTWNEEKSLQKLLG 70
Query: 199 EEQFSLLYKASVHGFSKEKLLDRCSHQGSILTVIYNEYHILGAYMPGGYLGELD-----I 363
LLYK+SVHG S +L++CS QGS + ++Y ++ G ++ Y +
Sbjct: 71 NVSLRLLYKSSVHGNSFGTMLNKCSCQGSTILMVYLPNNVFGIFVLESYPEMSEHLKKPT 130
Query: 364 SITLFAFQETEISKCEIGPLNPCLLFSGNNINSEF------IINLEKKAVVTSVTTMEKL 525
+ L +FQ+ +I + N + N + F ++ + + EKL
Sbjct: 131 TSFLLSFQKNKIMEMTAAFFNSTVDLIDNKLRFNFSQVQYVLLRSNTQNIFIPRLLGEKL 190
Query: 526 GLPQCCMS-FKECEVFRCEDLLDK----RSMDGIIELKESLMSAIRTYKPYGGLVHQIQI 690
GL S + E EVFR E + D+ + G ++SL++ +R Y+PY LV +I+I
Sbjct: 191 GLTYDFKSQYTEYEVFRVEGMKDEPGYINRIAGATPHRDSLLAELRAYRPYADLVSEIRI 250
Query: 691 LLLGPIGAGKSSFFNAVKSVFRGHVTNQALVGSDITGVSEKY 816
LLLGP+G+GKSSFFN+VKS+FRGH+T QA+VGSDI+ ++EKY
Sbjct: 251 LLLGPVGSGKSSFFNSVKSIFRGHLTRQAIVGSDISSITEKY 292
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 18,940,287
Number of extensions: 466808
Number of successful extensions: 1236
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 1235
Number of HSP's successfully gapped: 2
Length of query: 272
Length of database: 11,343,932
Length adjustment: 97
Effective length of query: 175
Effective length of database: 8,928,923
Effective search space: 1562561525
Effective search space used: 1562561525
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 33 (17.3 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003825
(816 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr06 886 0.0
Sscrofa_Chr08 799 0.0
>Sscrofa_Chr06
|| Length = 157765593
Score = 886 bits (447), Expect = 0.0
Identities = 453/455 (99%)
Strand = Plus / Minus
Query: 126 caggttgagaagtatggcagtgacaacttgcttgacctggatgcaggaaaagcatctgaa 185
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 124806320 caggttgagaagtatggcagtgacaacttgcttgacctggatgcaggaaaagcatctgaa 124806261
Query: 186 aacttattttggagaagagcagtttagccttctctataaggccagtgtccatggattctc 245
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 124806260 aacttattttggaaaagagcagtttagccttctctataaggccagtgtccatggattctc 124806201
Query: 246 taaagagaagttgcttgacagatgctctcatcaaggatctattctaacagtgatttataa 305
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 124806200 taaagagaagttgcttgacagatgctctcatcaaggatctattctaacagtggtttataa 124806141
Query: 306 tgaatatcacattcttggtgcctatatgccagggggttacctgggagaattggacatttc 365
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 124806140 tgaatatcacattcttggtgcctatatgccagggggttacctgggagaattggacatttc 124806081
Query: 366 catcaccctttttgcctttcaagagactgaaatttcgaagtgcgaaataggaccgcttaa 425
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 124806080 catcaccctttttgcctttcaagagactgaaatttcgaagtgcgaaataggaccgcttaa 124806021
Query: 426 tccatgtttgttgtttagtggaaataatatcaattctgaattcattataaatctagagaa 485
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 124806020 tccatgtttgttgtttagtggaaataatatcaattctgaattcattataaatctagagaa 124805961
Query: 486 aaaagcggtggttactagcgtgactacaatggaaaagcttggactacctcagtgttgtat 545
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 124805960 aaaagcggtggttactagcgtgactacaatggaaaagcttggactacctcagtgttgtat 124805901
Query: 546 gtcctttaaggaatgtgaagtttttcgatgtgaag 580
|||||||||||||||||||||||||||||||||||
Sbjct: 124805900 gtcctttaaggaatgtgaagtttttcgatgtgaag 124805866
Score = 389 bits (196), Expect = e-105
Identities = 196/196 (100%)
Strand = Plus / Minus
Query: 618 gctcaaggagagcttaatgtctgccataagaacttacaaaccatatggaggcctggttca 677
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 124801062 gctcaaggagagcttaatgtctgccataagaacttacaaaccatatggaggcctggttca 124801003
Query: 678 ccaaatacaaattctgcttctgggtccaattggagctgggaagtccagctttttcaacgc 737
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 124801002 ccaaatacaaattctgcttctgggtccaattggagctgggaagtccagctttttcaacgc 124800943
Query: 738 agtgaagtctgtcttccgaggccatgtcacgaaccaggctttggtgggttctgatataac 797
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 124800942 agtgaagtctgtcttccgaggccatgtcacgaaccaggctttggtgggttctgatataac 124800883
Query: 798 tggcgtatctgaaaaa 813
||||||||||||||||
Sbjct: 124800882 tggcgtatctgaaaaa 124800867
Score = 258 bits (130), Expect = 4e-66
Identities = 130/130 (100%)
Strand = Plus / Minus
Query: 1 tttccttttcccggagtctccagaagcctcaagattgctgagaaattttctgctccttcg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 124806696 tttccttttcccggagtctccagaagcctcaagattgctgagaaattttctgctccttcg 124806637
Query: 61 tgcctgcctaactgtcccaacagagcagctaccctcagcttcagcccctatatagattct 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 124806636 tgcctgcctaactgtcccaacagagcagctaccctcagcttcagcccctatatagattct 124806577
Query: 121 acaaacaggt 130
||||||||||
Sbjct: 124806576 acaaacaggt 124806567
Score = 79.8 bits (40), Expect = 2e-12
Identities = 40/40 (100%)
Strand = Plus / Minus
Query: 579 agatttattggacaaaaggagtatggatgggattattgag 618
||||||||||||||||||||||||||||||||||||||||
Sbjct: 124801817 agatttattggacaaaaggagtatggatgggattattgag 124801778
>Sscrofa_Chr08
|| Length = 148491826
Score = 799 bits (403), Expect = 0.0
Identities = 446/455 (98%), Gaps = 4/455 (0%)
Strand = Plus / Plus
Query: 126 caggttgagaagtatggcagtgacaacttgcttgacctggatgcaggaaaagcatctgaa 185
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 146499227 caggttgagaagtatggcagtgacaacttgcttgacctggatgcaggaaaagcatctgaa 146499286
Query: 186 aacttattttggagaagagcagtttagccttctctataaggccagtgtccatggattctc 245
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 146499287 aacttattttggaaaagagcagtttagccttctctataaggccagtgtccatggattctc 146499346
Query: 246 taaagagaagttgcttgacagatgctctcatcaaggatctattctaacagtgatttataa 305
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 146499347 taaagagaagttgcttgacagatgctctcatcaaggatctattctaacagtggtttataa 146499406
Query: 306 tgaatatcacattcttggtgcctatatgccagggggttacctgggagaattggacatttc 365
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 146499407 tgaatatcacattcttggtgcctatatgccagggggttacctgggagaaatggacatttc 146499466
Query: 366 catcaccctttttgcctttcaagagactgaaatttcgaagtgcgaaataggaccgcttaa 425
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 146499467 catcaccctttttgcctttc-agagactgaaatttcgaagtgcgaaataggaccgcttaa 146499525
Query: 426 tccatgtttgttgtttagtggaaataatatcaattctgaattcattataaatctagagaa 485
|||||| |||| |||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 146499526 tccatg-ttgtgttttagtggaaat-atatcaattctgaattcattataaatctagagaa 146499583
Query: 486 aaaagcggtggttactagcgtgactacaatggaaaagcttggactacctcagtgttgtat 545
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 146499584 aaaagcggtggttactagcgtgactacaatggaaaagcttggactacctcagtgttgtat 146499643
Query: 546 gtcctttaaggaatgtgaagtttttcgatgtgaag 580
|||| ||||||||||||||||||||||||||||||
Sbjct: 146499644 gtcc-ttaaggaatgtgaagtttttcgatgtgaag 146499677
Score = 258 bits (130), Expect = 4e-66
Identities = 130/130 (100%)
Strand = Plus / Plus
Query: 1 tttccttttcccggagtctccagaagcctcaagattgctgagaaattttctgctccttcg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 146498851 tttccttttcccggagtctccagaagcctcaagattgctgagaaattttctgctccttcg 146498910
Query: 61 tgcctgcctaactgtcccaacagagcagctaccctcagcttcagcccctatatagattct 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 146498911 tgcctgcctaactgtcccaacagagcagctaccctcagcttcagcccctatatagattct 146498970
Query: 121 acaaacaggt 130
||||||||||
Sbjct: 146498971 acaaacaggt 146498980
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 27,451,728
Number of extensions: 405
Number of successful extensions: 405
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 402
Number of HSP's successfully gapped: 6
Length of query: 816
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 795
Effective length of database: 2,808,413,156
Effective search space: 2232688459020
Effective search space used: 2232688459020
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 29 (58.0 bits)