Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003841
(986 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001073785.1| mediator of RNA polymerase II transcription ... 273 2e-73
>ref|NP_001073785.1| mediator of RNA polymerase II transcription subunit 29 [Bos
taurus].
Length = 200
Score = 273 bits (698), Expect = 2e-73
Identities = 133/133 (100%), Positives = 133/133 (100%)
Frame = +2
Query: 191 DFDPVQRYKMLIPQLKESLQTLMKVAAQNLIQNTNIDNGQKSSDGPIQRFDKCLEEFYAL 370
DFDPVQRYKMLIPQLKESLQTLMKVAAQNLIQNTNIDNGQKSSDGPIQRFDKCLEEFYAL
Sbjct: 53 DFDPVQRYKMLIPQLKESLQTLMKVAAQNLIQNTNIDNGQKSSDGPIQRFDKCLEEFYAL 112
Query: 371 CDQLELCLRLAHECLSQSCDSAKHSPTLVPTATKPDAVQPDSLPYPQYLAVIKAQIACAK 550
CDQLELCLRLAHECLSQSCDSAKHSPTLVPTATKPDAVQPDSLPYPQYLAVIKAQIACAK
Sbjct: 113 CDQLELCLRLAHECLSQSCDSAKHSPTLVPTATKPDAVQPDSLPYPQYLAVIKAQIACAK 172
Query: 551 DIHTALLDCANKV 589
DIHTALLDCANKV
Sbjct: 173 DIHTALLDCANKV 185
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 35,945,145
Number of extensions: 1035258
Number of successful extensions: 5088
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 5065
Number of HSP's successfully gapped: 1
Length of query: 328
Length of database: 17,681,374
Length adjustment: 103
Effective length of query: 225
Effective length of database: 14,273,310
Effective search space: 3211494750
Effective search space used: 3211494750
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003841
(986 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_855358.1| PREDICTED: similar to intersex-like [Canis fami... 273 2e-73
>ref|XP_855358.1| PREDICTED: similar to intersex-like [Canis familiaris].
Length = 241
Score = 273 bits (698), Expect = 2e-73
Identities = 133/133 (100%), Positives = 133/133 (100%)
Frame = +2
Query: 191 DFDPVQRYKMLIPQLKESLQTLMKVAAQNLIQNTNIDNGQKSSDGPIQRFDKCLEEFYAL 370
DFDPVQRYKMLIPQLKESLQTLMKVAAQNLIQNTNIDNGQKSSDGPIQRFDKCLEEFYAL
Sbjct: 94 DFDPVQRYKMLIPQLKESLQTLMKVAAQNLIQNTNIDNGQKSSDGPIQRFDKCLEEFYAL 153
Query: 371 CDQLELCLRLAHECLSQSCDSAKHSPTLVPTATKPDAVQPDSLPYPQYLAVIKAQIACAK 550
CDQLELCLRLAHECLSQSCDSAKHSPTLVPTATKPDAVQPDSLPYPQYLAVIKAQIACAK
Sbjct: 154 CDQLELCLRLAHECLSQSCDSAKHSPTLVPTATKPDAVQPDSLPYPQYLAVIKAQIACAK 213
Query: 551 DIHTALLDCANKV 589
DIHTALLDCANKV
Sbjct: 214 DIHTALLDCANKV 226
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 37,336,252
Number of extensions: 1056802
Number of successful extensions: 5280
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 5259
Number of HSP's successfully gapped: 1
Length of query: 328
Length of database: 18,874,504
Length adjustment: 103
Effective length of query: 225
Effective length of database: 15,440,896
Effective search space: 3474201600
Effective search space used: 3474201600
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003841
(986 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_060062.1| mediator of RNA polymerase II transcription sub... 272 4e-73
>ref|NP_060062.1| mediator of RNA polymerase II transcription subunit 29 [Homo
sapiens].
Length = 221
Score = 272 bits (695), Expect = 4e-73
Identities = 132/133 (99%), Positives = 133/133 (100%)
Frame = +2
Query: 191 DFDPVQRYKMLIPQLKESLQTLMKVAAQNLIQNTNIDNGQKSSDGPIQRFDKCLEEFYAL 370
DFDPVQRYKMLIPQLKESLQTLMKVAAQNLIQNTNIDNGQKSSDGPIQRFDKCLEEFYAL
Sbjct: 74 DFDPVQRYKMLIPQLKESLQTLMKVAAQNLIQNTNIDNGQKSSDGPIQRFDKCLEEFYAL 133
Query: 371 CDQLELCLRLAHECLSQSCDSAKHSPTLVPTATKPDAVQPDSLPYPQYLAVIKAQIACAK 550
CDQLELCLRLAHECLSQSCDSAKHSPTLVPTATKPDAVQPDSLPYPQYLAVIKAQI+CAK
Sbjct: 134 CDQLELCLRLAHECLSQSCDSAKHSPTLVPTATKPDAVQPDSLPYPQYLAVIKAQISCAK 193
Query: 551 DIHTALLDCANKV 589
DIHTALLDCANKV
Sbjct: 194 DIHTALLDCANKV 206
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 36,748,106
Number of extensions: 1043180
Number of successful extensions: 4930
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 4899
Number of HSP's successfully gapped: 1
Length of query: 328
Length of database: 18,297,164
Length adjustment: 103
Effective length of query: 225
Effective length of database: 14,901,872
Effective search space: 3352921200
Effective search space used: 3352921200
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003841
(986 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_080318.2| mediator of RNA polymerase II transcription sub... 268 4e-72
>ref|NP_080318.2| mediator of RNA polymerase II transcription subunit 29 [Mus
musculus].
Length = 199
Score = 268 bits (686), Expect = 4e-72
Identities = 130/133 (97%), Positives = 131/133 (98%)
Frame = +2
Query: 191 DFDPVQRYKMLIPQLKESLQTLMKVAAQNLIQNTNIDNGQKSSDGPIQRFDKCLEEFYAL 370
DFDPVQRYKMLIPQLKESLQTLMKVAAQNLIQNTNIDNGQKSSD P+QRFDKCLEEFYAL
Sbjct: 52 DFDPVQRYKMLIPQLKESLQTLMKVAAQNLIQNTNIDNGQKSSDAPLQRFDKCLEEFYAL 111
Query: 371 CDQLELCLRLAHECLSQSCDSAKHSPTLVPTATKPDAVQPDSLPYPQYLAVIKAQIACAK 550
CDQLELCLRLAHECLSQSCDSAKHSPTLVPTATKPDAVQPDSLPYPQYLAVIKAQI CAK
Sbjct: 112 CDQLELCLRLAHECLSQSCDSAKHSPTLVPTATKPDAVQPDSLPYPQYLAVIKAQITCAK 171
Query: 551 DIHTALLDCANKV 589
DIHTALLDCANKV
Sbjct: 172 DIHTALLDCANKV 184
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 31,069,540
Number of extensions: 866158
Number of successful extensions: 4284
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 4242
Number of HSP's successfully gapped: 1
Length of query: 328
Length of database: 15,617,559
Length adjustment: 102
Effective length of query: 226
Effective length of database: 12,553,887
Effective search space: 2837178462
Effective search space used: 2837178462
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003841
(986 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_003133253.1| PREDICTED: mediator of RNA polymerase II tra... 273 1e-73
>ref|XP_003133253.1| PREDICTED: mediator of RNA polymerase II transcription subunit
29-like [Sus scrofa].
Length = 219
Score = 273 bits (698), Expect = 1e-73
Identities = 133/133 (100%), Positives = 133/133 (100%)
Frame = +2
Query: 191 DFDPVQRYKMLIPQLKESLQTLMKVAAQNLIQNTNIDNGQKSSDGPIQRFDKCLEEFYAL 370
DFDPVQRYKMLIPQLKESLQTLMKVAAQNLIQNTNIDNGQKSSDGPIQRFDKCLEEFYAL
Sbjct: 54 DFDPVQRYKMLIPQLKESLQTLMKVAAQNLIQNTNIDNGQKSSDGPIQRFDKCLEEFYAL 113
Query: 371 CDQLELCLRLAHECLSQSCDSAKHSPTLVPTATKPDAVQPDSLPYPQYLAVIKAQIACAK 550
CDQLELCLRLAHECLSQSCDSAKHSPTLVPTATKPDAVQPDSLPYPQYLAVIKAQIACAK
Sbjct: 114 CDQLELCLRLAHECLSQSCDSAKHSPTLVPTATKPDAVQPDSLPYPQYLAVIKAQIACAK 173
Query: 551 DIHTALLDCANKV 589
DIHTALLDCANKV
Sbjct: 174 DIHTALLDCANKV 186
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 23,201,817
Number of extensions: 666970
Number of successful extensions: 3369
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 3355
Number of HSP's successfully gapped: 1
Length of query: 328
Length of database: 11,343,932
Length adjustment: 99
Effective length of query: 229
Effective length of database: 8,879,129
Effective search space: 2033320541
Effective search space used: 2033320541
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003841
(986 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr14 519 e-145
Sscrofa_Chr06 519 e-145
>Sscrofa_Chr14
|| Length = 153851969
Score = 519 bits (262), Expect = e-145
Identities = 262/262 (100%)
Strand = Plus / Minus
Query: 394 gcgcctggcacatgagtgcctgtcacagagttgcgacagtgccaagcactctccgacgct 453
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 143687572 gcgcctggcacatgagtgcctgtcacagagttgcgacagtgccaagcactctccgacgct 143687513
Query: 454 ggtgcctacagccaccaagcccgatgccgtgcagcctgacagcctgccctacccacagta 513
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 143687512 ggtgcctacagccaccaagcccgatgccgtgcagcctgacagcctgccctacccacagta 143687453
Query: 514 cctggcggtcatcaaagcccagattgcctgtgccaaggacattcacactgctctcctgga 573
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 143687452 cctggcggtcatcaaagcccagattgcctgtgccaaggacattcacactgctctcctgga 143687393
Query: 574 ctgcgccaacaaggtcacaggcaagacgcctgcgccaccagcaggccctgggggcaccct 633
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 143687392 ctgcgccaacaaggtcacaggcaagacgcctgcgccaccagcaggccctgggggcaccct 143687333
Query: 634 gtgagttggccagactaggaat 655
||||||||||||||||||||||
Sbjct: 143687332 gtgagttggccagactaggaat 143687311
Score = 496 bits (250), Expect = e-137
Identities = 250/250 (100%)
Strand = Plus / Minus
Query: 1 ggacgcacttccggcgcgctaagcagggaagatggctgcatcccaacctcaggcttctgc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 143691898 ggacgcacttccggcgcgctaagcagggaagatggctgcatcccaacctcaggcttctgc 143691839
Query: 61 agcttcttctgctgctgctggtgtgtcgggtccgggttcggctggcggctcgggtcctca 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 143691838 agcttcttctgctgctgctggtgtgtcgggtccgggttcggctggcggctcgggtcctca 143691779
Query: 121 gcagcagccgcaaccacaggcacagttggtggggcctgcccagggcgggcttttgcagca 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 143691778 gcagcagccgcaaccacaggcacagttggtggggcctgcccagggcgggcttttgcagca 143691719
Query: 181 acagcaacaggacttcgatcctgtacagcgatataagatgctcatcccgcagctaaaaga 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 143691718 acagcaacaggacttcgatcctgtacagcgatataagatgctcatcccgcagctaaaaga 143691659
Query: 241 gagtctgcag 250
||||||||||
Sbjct: 143691658 gagtctgcag 143691649
Score = 484 bits (244), Expect = e-134
Identities = 283/296 (95%)
Strand = Plus / Minus
Query: 690 atgaaaagtggcctcaaagcaaattcgtctcaaaaatttcttcccactgaacactgcggc 749
||||||||||||||||||||| |||||||| | ||||||||||||||||||||||||
Sbjct: 143687276 atgaaaagtggcctcaaagcagcttcgtctctgacttttcttcccactgaacactgcggc 143687217
Query: 750 cggagccagcagggggcaccagaagccagcagggagtgcgcagggtggggcctggcctct 809
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 143687216 cggagccagcagggggcaccagaggccagcagggagtgcgcagggtggggcctggcctct 143687157
Query: 810 gccctctgccttttctcctccctggctgagagtaggctttggattgtgcctgggagtgac 869
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 143687156 gccctctgccttttctcctccctggctgagagtaggctttggattgtgcctggaggtgac 143687097
Query: 870 ctcttcagggtctctcccagccctggtctgggcatggagccctggtttggctccactcct 929
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 143687096 ctcttcagggtctctcccagccctggtctgggcatggagccctggtttggctccactcct 143687037
Query: 930 tctgtccttcctttgatctatcctgtctaaaagcggtctctgtctgctcctttttc 985
||||||||||||| ||||||||||||| ||||||||||||||||||||||||||
Sbjct: 143687036 tctgtccttccttgattctatcctgtctagaagcggtctctgtctgctcctttttc 143686981
Score = 168 bits (85), Expect = 4e-39
Identities = 85/85 (100%)
Strand = Plus / Minus
Query: 310 aaagagcagcgatggacccatacagcgctttgacaagtgtctggaggagttctacgcact 369
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 143690477 aaagagcagcgatggacccatacagcgctttgacaagtgtctggaggagttctacgcact 143690418
Query: 370 ctgtgaccagctggagctctgcctg 394
|||||||||||||||||||||||||
Sbjct: 143690417 ctgtgaccagctggagctctgcctg 143690393
Score = 121 bits (61), Expect = 8e-25
Identities = 61/61 (100%)
Strand = Plus / Minus
Query: 249 agaccctgatgaaggttgcagcccagaacttgattcagaacactaacattgacaatggac 308
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 143690813 agaccctgatgaaggttgcagcccagaacttgattcagaacactaacattgacaatggac 143690754
Query: 309 a 309
|
Sbjct: 143690753 a 143690753
>Sscrofa_Chr06
|| Length = 157765593
Score = 519 bits (262), Expect = e-145
Identities = 262/262 (100%)
Strand = Plus / Minus
Query: 394 gcgcctggcacatgagtgcctgtcacagagttgcgacagtgccaagcactctccgacgct 453
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 43903590 gcgcctggcacatgagtgcctgtcacagagttgcgacagtgccaagcactctccgacgct 43903531
Query: 454 ggtgcctacagccaccaagcccgatgccgtgcagcctgacagcctgccctacccacagta 513
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 43903530 ggtgcctacagccaccaagcccgatgccgtgcagcctgacagcctgccctacccacagta 43903471
Query: 514 cctggcggtcatcaaagcccagattgcctgtgccaaggacattcacactgctctcctgga 573
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 43903470 cctggcggtcatcaaagcccagattgcctgtgccaaggacattcacactgctctcctgga 43903411
Query: 574 ctgcgccaacaaggtcacaggcaagacgcctgcgccaccagcaggccctgggggcaccct 633
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 43903410 ctgcgccaacaaggtcacaggcaagacgcctgcgccaccagcaggccctgggggcaccct 43903351
Query: 634 gtgagttggccagactaggaat 655
||||||||||||||||||||||
Sbjct: 43903350 gtgagttggccagactaggaat 43903329
Score = 496 bits (250), Expect = e-137
Identities = 250/250 (100%)
Strand = Plus / Minus
Query: 1 ggacgcacttccggcgcgctaagcagggaagatggctgcatcccaacctcaggcttctgc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 43907916 ggacgcacttccggcgcgctaagcagggaagatggctgcatcccaacctcaggcttctgc 43907857
Query: 61 agcttcttctgctgctgctggtgtgtcgggtccgggttcggctggcggctcgggtcctca 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 43907856 agcttcttctgctgctgctggtgtgtcgggtccgggttcggctggcggctcgggtcctca 43907797
Query: 121 gcagcagccgcaaccacaggcacagttggtggggcctgcccagggcgggcttttgcagca 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 43907796 gcagcagccgcaaccacaggcacagttggtggggcctgcccagggcgggcttttgcagca 43907737
Query: 181 acagcaacaggacttcgatcctgtacagcgatataagatgctcatcccgcagctaaaaga 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 43907736 acagcaacaggacttcgatcctgtacagcgatataagatgctcatcccgcagctaaaaga 43907677
Query: 241 gagtctgcag 250
||||||||||
Sbjct: 43907676 gagtctgcag 43907667
Score = 484 bits (244), Expect = e-134
Identities = 283/296 (95%)
Strand = Plus / Minus
Query: 690 atgaaaagtggcctcaaagcaaattcgtctcaaaaatttcttcccactgaacactgcggc 749
||||||||||||||||||||| |||||||| | ||||||||||||||||||||||||
Sbjct: 43903294 atgaaaagtggcctcaaagcagcttcgtctctgacttttcttcccactgaacactgcggc 43903235
Query: 750 cggagccagcagggggcaccagaagccagcagggagtgcgcagggtggggcctggcctct 809
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 43903234 cggagccagcagggggcaccagaggccagcagggagtgcgcagggtggggcctggcctct 43903175
Query: 810 gccctctgccttttctcctccctggctgagagtaggctttggattgtgcctgggagtgac 869
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 43903174 gccctctgccttttctcctccctggctgagagtaggctttggattgtgcctggaggtgac 43903115
Query: 870 ctcttcagggtctctcccagccctggtctgggcatggagccctggtttggctccactcct 929
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 43903114 ctcttcagggtctctcccagccctggtctgggcatggagccctggtttggctccactcct 43903055
Query: 930 tctgtccttcctttgatctatcctgtctaaaagcggtctctgtctgctcctttttc 985
||||||||||||| ||||||||||||| ||||||||||||||||||||||||||
Sbjct: 43903054 tctgtccttccttgattctatcctgtctagaagcggtctctgtctgctcctttttc 43902999
Score = 168 bits (85), Expect = 4e-39
Identities = 85/85 (100%)
Strand = Plus / Minus
Query: 310 aaagagcagcgatggacccatacagcgctttgacaagtgtctggaggagttctacgcact 369
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 43906495 aaagagcagcgatggacccatacagcgctttgacaagtgtctggaggagttctacgcact 43906436
Query: 370 ctgtgaccagctggagctctgcctg 394
|||||||||||||||||||||||||
Sbjct: 43906435 ctgtgaccagctggagctctgcctg 43906411
Score = 121 bits (61), Expect = 8e-25
Identities = 61/61 (100%)
Strand = Plus / Minus
Query: 249 agaccctgatgaaggttgcagcccagaacttgattcagaacactaacattgacaatggac 308
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 43906831 agaccctgatgaaggttgcagcccagaacttgattcagaacactaacattgacaatggac 43906772
Query: 309 a 309
|
Sbjct: 43906771 a 43906771
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 28,363,707
Number of extensions: 282
Number of successful extensions: 282
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 282
Number of HSP's successfully gapped: 10
Length of query: 986
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 965
Effective length of database: 2,808,413,156
Effective search space: 2710118695540
Effective search space used: 2710118695540
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 29 (58.0 bits)