Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003851
(1346 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001092412.1| mRNA cap guanine-N7 methyltransferase [Bos t... 509 e-144
>ref|NP_001092412.1| mRNA cap guanine-N7 methyltransferase [Bos taurus].
Length = 477
Score = 509 bits (1312), Expect = e-144
Identities = 256/307 (83%), Positives = 270/307 (87%)
Frame = +2
Query: 425 MENSAKAEECEKLSLKEAKTSIDSETESSFSIDENTTSPGTRLSEKAPTCGLVGTPKKRK 604
MENSAKAEE EK+ KE KTS+DSETESSF I+ENT P T LS +APTCG V TPKKRK
Sbjct: 1 MENSAKAEEHEKIFHKEVKTSLDSETESSFIINENTAFPETGLSAEAPTCGQVNTPKKRK 60
Query: 605 MAFEDDLVKESSSCGEDTPSKKRKLDAGIVPEEKGSGDDEGISRKRRMESDGFTKDEPST 784
M FE+DLVKESSSCGEDTP KKRKLDA I PEEKGSGDDEGISR+RR+E+DGF KDEP+
Sbjct: 61 MEFEEDLVKESSSCGEDTPPKKRKLDAEIAPEEKGSGDDEGISRRRRIETDGFPKDEPA- 119
Query: 785 GDGTQKKRKIELEDVPEKRKNLEEGHSSAVAAHYNELQEVGLEKRSQSRIFYLRNFNNWM 964
GDGTQK+RKIELEDVPEK+KNLEEGHSSAVAAHYNELQEVGLEKRSQSRIFYLRNFNNWM
Sbjct: 120 GDGTQKRRKIELEDVPEKQKNLEEGHSSAVAAHYNELQEVGLEKRSQSRIFYLRNFNNWM 179
Query: 965 KSVLIGEFLEKVRQKKKRDITVXXXXXXXXXXXXXXXXXRIDKLVCTDIADVSVKQCQQR 1144
KSVLIGEFLEKVRQKKKR+ITV RIDKLVCTDIADVSV+QCQQR
Sbjct: 180 KSVLIGEFLEKVRQKKKRNITVLDLGCGKGGDLLKWKKGRIDKLVCTDIADVSVRQCQQR 239
Query: 1145 YEDMKNRCRDNEYIFSAEFITADCSKELLIDKFRDPEMCFDICSCQFVCHYSFESYEQAD 1324
YEDMKNRCRDNEYIFSAEFITADCSKELL DKFRD EMCFDICSCQFVCHYSFESYEQAD
Sbjct: 240 YEDMKNRCRDNEYIFSAEFITADCSKELLTDKFRDREMCFDICSCQFVCHYSFESYEQAD 299
Query: 1325 IMLRNAC 1345
+MLRNAC
Sbjct: 300 VMLRNAC 306
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 44,871,099
Number of extensions: 1074676
Number of successful extensions: 3959
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 3915
Number of HSP's successfully gapped: 1
Length of query: 448
Length of database: 17,681,374
Length adjustment: 105
Effective length of query: 343
Effective length of database: 14,207,134
Effective search space: 4873046962
Effective search space used: 4873046962
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003851
(1346 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_533404.2| PREDICTED: similar to RNA (guanine-7-) methyltr... 519 e-147
Alignment gi|XP_540158.2| PREDICTED: similar to RNA (guanine-7-) methyltr... 390 e-108
Alignment gi|XP_849527.1| PREDICTED: similar to RNA (guanine-7-) methyltr... 295 7e-80
>ref|XP_533404.2| PREDICTED: similar to RNA (guanine-7-) methyltransferase [Canis
familiaris].
Length = 460
Score = 519 bits (1337), Expect = e-147
Identities = 259/307 (84%), Positives = 272/307 (88%)
Frame = +2
Query: 425 MENSAKAEECEKLSLKEAKTSIDSETESSFSIDENTTSPGTRLSEKAPTCGLVGTPKKRK 604
MENSAKAEECEKLSL+EAK S D ET+SSFSI+ENTT+PGT LSEKAP PKKRK
Sbjct: 1 MENSAKAEECEKLSLEEAKASKDLETKSSFSINENTTTPGTGLSEKAPVWEQADAPKKRK 60
Query: 605 MAFEDDLVKESSSCGEDTPSKKRKLDAGIVPEEKGSGDDEGISRKRRMESDGFTKDEPST 784
M FEDDL+KESSSCGEDTP+KKRKLDA IVPEEKGSGDDEGISRKRRME+D F KDE ST
Sbjct: 61 MEFEDDLIKESSSCGEDTPTKKRKLDAEIVPEEKGSGDDEGISRKRRMETDDFPKDESST 120
Query: 785 GDGTQKKRKIELEDVPEKRKNLEEGHSSAVAAHYNELQEVGLEKRSQSRIFYLRNFNNWM 964
GDGTQKKRKIELEDVPEK+KNLEEGHSSAVAAHYNELQEVGLEKRSQSRIFYLRNFNNWM
Sbjct: 121 GDGTQKKRKIELEDVPEKQKNLEEGHSSAVAAHYNELQEVGLEKRSQSRIFYLRNFNNWM 180
Query: 965 KSVLIGEFLEKVRQKKKRDITVXXXXXXXXXXXXXXXXXRIDKLVCTDIADVSVKQCQQR 1144
KSVLIGEFLEKVRQKKKRDITV RI+KLVCTDIADVSVKQCQQR
Sbjct: 181 KSVLIGEFLEKVRQKKKRDITVLDLGCGKGGDLLKWKKGRINKLVCTDIADVSVKQCQQR 240
Query: 1145 YEDMKNRCRDNEYIFSAEFITADCSKELLIDKFRDPEMCFDICSCQFVCHYSFESYEQAD 1324
YEDMKNRCRDNEYIF+AEF+TADCSKELL +KFRDPE CFDICSCQFVCHYSFESYEQAD
Sbjct: 241 YEDMKNRCRDNEYIFNAEFVTADCSKELLFNKFRDPETCFDICSCQFVCHYSFESYEQAD 300
Query: 1325 IMLRNAC 1345
+MLRNAC
Sbjct: 301 MMLRNAC 307
>ref|XP_540158.2| PREDICTED: similar to RNA (guanine-7-) methyltransferase [Canis
familiaris].
Length = 411
Score = 390 bits (1001), Expect = e-108
Identities = 207/287 (72%), Positives = 221/287 (77%)
Frame = +2
Query: 425 MENSAKAEECEKLSLKEAKTSIDSETESSFSIDENTTSPGTRLSEKAPTCGLVGTPKKRK 604
MENSAKAEECEKLSL+EAK S D ET+SSFSI+ENTT+PGT LSEKAP G TPKKRK
Sbjct: 1 MENSAKAEECEKLSLEEAKASKDLETKSSFSINENTTTPGTGLSEKAPVWGQADTPKKRK 60
Query: 605 MAFEDDLVKESSSCGEDTPSKKRKLDAGIVPEEKGSGDDEGISRKRRMESDGFTKDEPST 784
FEDDL+KESSSCGEDTP+KKRKLDA IV EEKGSGDDEGISRKRRME+D F KDEPST
Sbjct: 61 -EFEDDLIKESSSCGEDTPTKKRKLDAEIVQEEKGSGDDEGISRKRRMETDDFPKDEPST 119
Query: 785 GDGTQKKRKIELEDVPEKRKNLEEGHSSAVAAHYNELQEVGLEKRSQSRIFYLRNFNNWM 964
GD TQKKRKIELED+PEK+KNLEEGHSSAVAAHYNELQEV
Sbjct: 120 GDDTQKKRKIELEDIPEKQKNLEEGHSSAVAAHYNELQEV-------------------- 159
Query: 965 KSVLIGEFLEKVRQKKKRDITVXXXXXXXXXXXXXXXXXRIDKLVCTDIADVSVKQCQQR 1144
EKVRQKKKRDITV RI+KLVCTDIADVSVKQCQQR
Sbjct: 160 ---------EKVRQKKKRDITVLDLGCGKGGDLLKWKKGRINKLVCTDIADVSVKQCQQR 210
Query: 1145 YEDMKNRCRDNEYIFSAEFITADCSKELLIDKFRDPEMCFDICSCQF 1285
YED+KNRC DNEYIF+AEF+TADCSKELLI+KFRDPE CFDICS F
Sbjct: 211 YEDVKNRCCDNEYIFNAEFVTADCSKELLINKFRDPETCFDICSRHF 257
>ref|XP_849527.1| PREDICTED: similar to RNA (guanine-7-) methyltransferase [Canis
familiaris].
Length = 344
Score = 295 bits (755), Expect = 7e-80
Identities = 147/184 (79%), Positives = 156/184 (84%), Gaps = 2/184 (1%)
Frame = +2
Query: 800 KKRKIELEDVPEKRKNLEEGHSSAVAAHYNELQEVGLEKRSQSRIFYLRNFNNWMKSVLI 979
K+ K +EDVPEK+KNLEEGHSSAVAAHYNELQEVGLEKRSQSRIF LRNFNNW+KSVLI
Sbjct: 31 KEEKNRIEDVPEKQKNLEEGHSSAVAAHYNELQEVGLEKRSQSRIFNLRNFNNWVKSVLI 90
Query: 980 GEFLEKVRQKKK--RDITVXXXXXXXXXXXXXXXXXRIDKLVCTDIADVSVKQCQQRYED 1153
EFLEKVRQKKK RDITV RI+K+VCTDI DVSVKQCQQRYED
Sbjct: 91 EEFLEKVRQKKKKQRDITVLDLGWGKGGDLLNWKKGRINKVVCTDITDVSVKQCQQRYED 150
Query: 1154 MKNRCRDNEYIFSAEFITADCSKELLIDKFRDPEMCFDICSCQFVCHYSFESYEQADIML 1333
MKN CRDNEYIFSAEF+TADCSKELLI+KFRD E CFDICSCQFVCHYSFESYEQAD+ML
Sbjct: 151 MKNHCRDNEYIFSAEFVTADCSKELLINKFRDAETCFDICSCQFVCHYSFESYEQADMML 210
Query: 1334 RNAC 1345
RNAC
Sbjct: 211 RNAC 214
Score = 52.8 bits (125), Expect = 8e-07
Identities = 26/35 (74%), Positives = 30/35 (85%)
Frame = +2
Query: 425 MENSAKAEECEKLSLKEAKTSIDSETESSFSIDEN 529
MENSAKAEECEKLSL+EAK S D ET+SSF ++N
Sbjct: 1 MENSAKAEECEKLSLEEAKASKDLETKSSFKEEKN 35
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 46,854,108
Number of extensions: 1113718
Number of successful extensions: 4646
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 4595
Number of HSP's successfully gapped: 4
Length of query: 448
Length of database: 18,874,504
Length adjustment: 106
Effective length of query: 342
Effective length of database: 15,340,888
Effective search space: 5246583696
Effective search space used: 5246583696
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003851
(1346 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_003790.1| mRNA cap guanine-N7 methyltransferase [Homo sap... 464 e-131
>ref|NP_003790.1| mRNA cap guanine-N7 methyltransferase [Homo sapiens].
Length = 476
Score = 464 bits (1195), Expect = e-131
Identities = 239/307 (77%), Positives = 259/307 (84%)
Frame = +2
Query: 425 MENSAKAEECEKLSLKEAKTSIDSETESSFSIDENTTSPGTRLSEKAPTCGLVGTPKKRK 604
M NSAKAEE EK+SL++AK S++SETESSF+I+ENTT+ GT LSEK C V +KRK
Sbjct: 1 MANSAKAEEYEKMSLEQAKASVNSETESSFNINENTTASGTGLSEKTSVCRQVDIARKRK 60
Query: 605 MAFEDDLVKESSSCGEDTPSKKRKLDAGIVPEEKGSGDDEGISRKRRMESDGFTKDEPST 784
FEDDLVKESSSCG+DTPSKKRKLD IVPEEK GD EG S+KR+ E++ KD+ ST
Sbjct: 61 -EFEDDLVKESSSCGKDTPSKKRKLDPEIVPEEKDCGDAEGNSKKRKRETEDVPKDKSST 119
Query: 785 GDGTQKKRKIELEDVPEKRKNLEEGHSSAVAAHYNELQEVGLEKRSQSRIFYLRNFNNWM 964
GDGTQ KRKI LEDVPEK+KNLEEGHSS VAAHYNELQEVGLEKRSQSRIFYLRNFNNWM
Sbjct: 120 GDGTQNKRKIALEDVPEKQKNLEEGHSSTVAAHYNELQEVGLEKRSQSRIFYLRNFNNWM 179
Query: 965 KSVLIGEFLEKVRQKKKRDITVXXXXXXXXXXXXXXXXXRIDKLVCTDIADVSVKQCQQR 1144
KSVLIGEFLEKVRQKKKRDITV RI+KLVCTDIADVSVKQCQQR
Sbjct: 180 KSVLIGEFLEKVRQKKKRDITVLDLGCGKGGDLLKWKKGRINKLVCTDIADVSVKQCQQR 239
Query: 1145 YEDMKNRCRDNEYIFSAEFITADCSKELLIDKFRDPEMCFDICSCQFVCHYSFESYEQAD 1324
YEDMKNR RD+EYIFSAEFITAD SKELLIDKFRDP+MCFDICSCQFVCHYSFESYEQAD
Sbjct: 240 YEDMKNR-RDSEYIFSAEFITADSSKELLIDKFRDPQMCFDICSCQFVCHYSFESYEQAD 298
Query: 1325 IMLRNAC 1345
+MLRNAC
Sbjct: 299 MMLRNAC 305
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 46,154,191
Number of extensions: 1098590
Number of successful extensions: 4197
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 4170
Number of HSP's successfully gapped: 1
Length of query: 448
Length of database: 18,297,164
Length adjustment: 106
Effective length of query: 342
Effective length of database: 14,802,980
Effective search space: 5062619160
Effective search space used: 5062619160
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003851
(1346 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001164424.1| mRNA cap guanine-N7 methyltransferase isofor... 344 1e-94
Alignment gi|NP_080716.1| mRNA cap guanine-N7 methyltransferase isoform 1... 344 1e-94
>ref|NP_001164424.1| mRNA cap guanine-N7 methyltransferase isoform 2 [Mus musculus].
Length = 410
Score = 344 bits (882), Expect = 1e-94
Identities = 180/292 (61%), Positives = 215/292 (73%), Gaps = 2/292 (0%)
Frame = +2
Query: 476 AKTSIDSETESSFSIDENTTSPGTRLSEKAPTCGLVGTPKKRKMAFEDDLVKESSSCGED 655
AK S+ S+ ES +E + G RL E P C V PK +K F +DLV+++SS +D
Sbjct: 5 AKASVASDPESPPGGNEPAAASGQRLPENTPPCQQVDQPKMQK-EFGEDLVEQNSSYVQD 63
Query: 656 TPSKKRKLDAGIVPEEKGSGDDEGISRKRRMESDGFTKDEPSTGDGTQKKRKIELED--V 829
+PSKKRKLD I+ EEK S DD G +++ ++E ++DEPS G Q KRK++ +D V
Sbjct: 64 SPSKKRKLDVEIILEEKHSEDDGGSAKRSKLERGDVSEDEPSLGRLNQTKRKLQPQDDEV 123
Query: 830 PEKRKNLEEGHSSAVAAHYNELQEVGLEKRSQSRIFYLRNFNNWMKSVLIGEFLEKVRQK 1009
P+K + LEEGHSSAVAAHYNELQEVGL KRSQSRIFYLRNFNNW+KS+LIGE LEKVRQ+
Sbjct: 124 PQKLQKLEEGHSSAVAAHYNELQEVGLAKRSQSRIFYLRNFNNWIKSILIGEILEKVRQR 183
Query: 1010 KKRDITVXXXXXXXXXXXXXXXXXRIDKLVCTDIADVSVKQCQQRYEDMKNRCRDNEYIF 1189
K RDITV RI +LVC DIAD+S+KQCQQRYEDM+ R RDNE+IF
Sbjct: 184 KTRDITVLDLGCGKGGDLLKWRKGRISRLVCADIADISMKQCQQRYEDMRCR-RDNEHIF 242
Query: 1190 SAEFITADCSKELLIDKFRDPEMCFDICSCQFVCHYSFESYEQADIMLRNAC 1345
SAEFITADCSKELL++KFRDPEM FD+CSCQF CHYSFES QAD MLRNAC
Sbjct: 243 SAEFITADCSKELLVEKFRDPEMYFDVCSCQFACHYSFESQVQADTMLRNAC 294
>ref|NP_080716.1| mRNA cap guanine-N7 methyltransferase isoform 1 [Mus musculus].
Length = 465
Score = 344 bits (882), Expect = 1e-94
Identities = 180/292 (61%), Positives = 215/292 (73%), Gaps = 2/292 (0%)
Frame = +2
Query: 476 AKTSIDSETESSFSIDENTTSPGTRLSEKAPTCGLVGTPKKRKMAFEDDLVKESSSCGED 655
AK S+ S+ ES +E + G RL E P C V PK +K F +DLV+++SS +D
Sbjct: 5 AKASVASDPESPPGGNEPAAASGQRLPENTPPCQQVDQPKMQK-EFGEDLVEQNSSYVQD 63
Query: 656 TPSKKRKLDAGIVPEEKGSGDDEGISRKRRMESDGFTKDEPSTGDGTQKKRKIELED--V 829
+PSKKRKLD I+ EEK S DD G +++ ++E ++DEPS G Q KRK++ +D V
Sbjct: 64 SPSKKRKLDVEIILEEKHSEDDGGSAKRSKLERGDVSEDEPSLGRLNQTKRKLQPQDDEV 123
Query: 830 PEKRKNLEEGHSSAVAAHYNELQEVGLEKRSQSRIFYLRNFNNWMKSVLIGEFLEKVRQK 1009
P+K + LEEGHSSAVAAHYNELQEVGL KRSQSRIFYLRNFNNW+KS+LIGE LEKVRQ+
Sbjct: 124 PQKLQKLEEGHSSAVAAHYNELQEVGLAKRSQSRIFYLRNFNNWIKSILIGEILEKVRQR 183
Query: 1010 KKRDITVXXXXXXXXXXXXXXXXXRIDKLVCTDIADVSVKQCQQRYEDMKNRCRDNEYIF 1189
K RDITV RI +LVC DIAD+S+KQCQQRYEDM+ R RDNE+IF
Sbjct: 184 KTRDITVLDLGCGKGGDLLKWRKGRISRLVCADIADISMKQCQQRYEDMRCR-RDNEHIF 242
Query: 1190 SAEFITADCSKELLIDKFRDPEMCFDICSCQFVCHYSFESYEQADIMLRNAC 1345
SAEFITADCSKELL++KFRDPEM FD+CSCQF CHYSFES QAD MLRNAC
Sbjct: 243 SAEFITADCSKELLVEKFRDPEMYFDVCSCQFACHYSFESQVQADTMLRNAC 294
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 39,246,580
Number of extensions: 932680
Number of successful extensions: 3535
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 3501
Number of HSP's successfully gapped: 2
Length of query: 448
Length of database: 15,617,559
Length adjustment: 105
Effective length of query: 343
Effective length of database: 12,463,779
Effective search space: 4275076197
Effective search space used: 4275076197
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003851
(1346 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_003361076.1| PREDICTED: mRNA cap guanine-N7 methyltransfe... 575 e-164
Alignment gi|XP_003356381.1| PREDICTED: mRNA cap guanine-N7 methyltransfe... 573 e-164
>ref|XP_003361076.1| PREDICTED: mRNA cap guanine-N7 methyltransferase-like [Sus scrofa].
Length = 478
Score = 575 bits (1483), Expect = e-164
Identities = 288/307 (93%), Positives = 288/307 (93%)
Frame = +2
Query: 425 MENSAKAEECEKLSLKEAKTSIDSETESSFSIDENTTSPGTRLSEKAPTCGLVGTPKKRK 604
MENSAKAEECEKLSLKEAKTSIDSETESSFSIDENTTSPGTRLSEKAPTCGLVGTPKKRK
Sbjct: 1 MENSAKAEECEKLSLKEAKTSIDSETESSFSIDENTTSPGTRLSEKAPTCGLVGTPKKRK 60
Query: 605 MAFEDDLVKESSSCGEDTPSKKRKLDAGIVPEEKGSGDDEGISRKRRMESDGFTKDEPST 784
M FEDDLVKESSSCGEDTPSKKRKLDAGIVPEEKGSGDDEGISRKRRMESDGFTKDE ST
Sbjct: 61 MEFEDDLVKESSSCGEDTPSKKRKLDAGIVPEEKGSGDDEGISRKRRMESDGFTKDESST 120
Query: 785 GDGTQKKRKIELEDVPEKRKNLEEGHSSAVAAHYNELQEVGLEKRSQSRIFYLRNFNNWM 964
GDGTQKKRKIELEDVPEKRKNLEEGHSSAVAAHYNELQEVGLEKRSQSRIFYLRNFNNWM
Sbjct: 121 GDGTQKKRKIELEDVPEKRKNLEEGHSSAVAAHYNELQEVGLEKRSQSRIFYLRNFNNWM 180
Query: 965 KSVLIGEFLEKVRQKKKRDITVXXXXXXXXXXXXXXXXXRIDKLVCTDIADVSVKQCQQR 1144
KSVLIGEFLEKVRQKKKRDITV RIDKLVCTDIADVSVKQCQQR
Sbjct: 181 KSVLIGEFLEKVRQKKKRDITVLDLGCGKGGDLLKWKKGRIDKLVCTDIADVSVKQCQQR 240
Query: 1145 YEDMKNRCRDNEYIFSAEFITADCSKELLIDKFRDPEMCFDICSCQFVCHYSFESYEQAD 1324
YEDMKNRCRDNEYIFSAEFITADCSKELLIDKFRDPEMCFDICSCQFVCHYSFESYEQAD
Sbjct: 241 YEDMKNRCRDNEYIFSAEFITADCSKELLIDKFRDPEMCFDICSCQFVCHYSFESYEQAD 300
Query: 1325 IMLRNAC 1345
IMLRNAC
Sbjct: 301 IMLRNAC 307
>ref|XP_003356381.1| PREDICTED: mRNA cap guanine-N7 methyltransferase-like [Sus scrofa].
Length = 478
Score = 573 bits (1478), Expect = e-164
Identities = 287/307 (93%), Positives = 287/307 (93%)
Frame = +2
Query: 425 MENSAKAEECEKLSLKEAKTSIDSETESSFSIDENTTSPGTRLSEKAPTCGLVGTPKKRK 604
MENSAKAEECEKLSLKEAKTSIDSETESSFSIDENTTSPGTRLSEKAP CGLVGTPKKRK
Sbjct: 1 MENSAKAEECEKLSLKEAKTSIDSETESSFSIDENTTSPGTRLSEKAPACGLVGTPKKRK 60
Query: 605 MAFEDDLVKESSSCGEDTPSKKRKLDAGIVPEEKGSGDDEGISRKRRMESDGFTKDEPST 784
M FEDDLVKESSSCGEDTPSKKRKLDAGIVPEEKGSGDDEGISRKRRMESDGFTKDE ST
Sbjct: 61 MEFEDDLVKESSSCGEDTPSKKRKLDAGIVPEEKGSGDDEGISRKRRMESDGFTKDESST 120
Query: 785 GDGTQKKRKIELEDVPEKRKNLEEGHSSAVAAHYNELQEVGLEKRSQSRIFYLRNFNNWM 964
GDGTQKKRKIELEDVPEKRKNLEEGHSSAVAAHYNELQEVGLEKRSQSRIFYLRNFNNWM
Sbjct: 121 GDGTQKKRKIELEDVPEKRKNLEEGHSSAVAAHYNELQEVGLEKRSQSRIFYLRNFNNWM 180
Query: 965 KSVLIGEFLEKVRQKKKRDITVXXXXXXXXXXXXXXXXXRIDKLVCTDIADVSVKQCQQR 1144
KSVLIGEFLEKVRQKKKRDITV RIDKLVCTDIADVSVKQCQQR
Sbjct: 181 KSVLIGEFLEKVRQKKKRDITVLDLGCGKGGDLLKWKKGRIDKLVCTDIADVSVKQCQQR 240
Query: 1145 YEDMKNRCRDNEYIFSAEFITADCSKELLIDKFRDPEMCFDICSCQFVCHYSFESYEQAD 1324
YEDMKNRCRDNEYIFSAEFITADCSKELLIDKFRDPEMCFDICSCQFVCHYSFESYEQAD
Sbjct: 241 YEDMKNRCRDNEYIFSAEFITADCSKELLIDKFRDPEMCFDICSCQFVCHYSFESYEQAD 300
Query: 1325 IMLRNAC 1345
IMLRNAC
Sbjct: 301 IMLRNAC 307
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 28,821,860
Number of extensions: 684317
Number of successful extensions: 2677
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 2643
Number of HSP's successfully gapped: 2
Length of query: 448
Length of database: 11,343,932
Length adjustment: 102
Effective length of query: 346
Effective length of database: 8,804,438
Effective search space: 3046335548
Effective search space used: 3046335548
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003851
(1346 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|GL893425.2| Sus scrofa unplaced genomic scaffold ChrUScaf1310 894 0.0
Sscrofa_Chr06 250 2e-63
>gb|GL893425.2| Sus scrofa unplaced genomic scaffold ChrUScaf1310
Length = 131331
Score = 894 bits (451), Expect = 0.0
Identities = 457/459 (99%)
Strand = Plus / Minus
Query: 386 gtgttagttcatgaagttgtgccatctaagtaatcaaaaatggaaaattcggcaaaagca 445
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 42011 gtgttagttcatgaagttgtgccatctaagtaatcaaaaatggaaaattcggcaaaagca 41952
Query: 446 gaggaatgtgaaaagctctctcttaaagaggcaaagacatcaatagattcagaaactgaa 505
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 41951 gaggaatgtgaaaagctctctcttaaagaggcaaagacatcaatagattcagaaactgaa 41892
Query: 506 tcttcattcagtattgatgaaaatacaacctctcccgggaccaggctttctgaaaaggct 565
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 41891 tcttcattcagtattgatgaaaatacaacctctcccgggaccaggctttctgaaaaggct 41832
Query: 566 cctacttgtgggctagtaggcactccaaaaaagagaaaaatggcgtttgaggacgatctt 625
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 41831 cctacttgtgggctagtaggcactccaaaaaagagaaaaatggagtttgaggacgatctt 41772
Query: 626 gtaaaggaaagttctagttgtggggaagacactccatccaagaaaagaaaacttgatgct 685
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 41771 gtaaaggaaagttctagttgtggggaagacactccatccaagaaaagaaaacttgatgct 41712
Query: 686 ggaattgtcccagaggaaaaaggttctggagatgatgaaggcatttcaaggaaaagaaga 745
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 41711 ggaattgtcccagaggaaaaaggttctggagatgatgaaggcatttcaaggaaaagaaga 41652
Query: 746 atggaaagtgatggttttacaaaagatgaaccttctactggagatggcactcagaaaaag 805
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 41651 atggaaagtgatggttttacaaaagatgaatcttctactggagatggcactcagaaaaag 41592
Query: 806 agaaaaatagaacttgaggatgttcctgaaaagcgaaag 844
|||||||||||||||||||||||||||||||||||||||
Sbjct: 41591 agaaaaatagaacttgaggatgttcctgaaaagcgaaag 41553
Score = 458 bits (231), Expect = e-126
Identities = 243/247 (98%)
Strand = Plus / Minus
Query: 125 gcccaggtcggagagacccgagagcggcttcaggactgccaggctgtcggagccggagcg 184
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 44205 gcccgggtcggagagacccgagagcggcttcaggactgccaggctgtcggagccggagcg 44146
Query: 185 gccagccgcctggcctgcgcggagggctggaacccgagccgggccgccccgggcggctct 244
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 44145 gccagccgcctggcctgcgcccagggctggaacccgagccgggccgccccgggcggctct 44086
Query: 245 gtgcgtccttgggcctgaggagacctggctggctggctggcagttcagacatggagctca 304
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 44085 gtgcgtccttgggcctgaggagacctggctggctagctggcagttcagacatggagctca 44026
Query: 305 cctgctggagctcgagctcctggcccgtcgtccccgggcaacttcgggggtgactgctgc 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 44025 cctgctggagctcgagctcctggcccgtcgtccccgggcaacttcgggggtgactgctgc 43966
Query: 365 gcaggtc 371
|||||||
Sbjct: 43965 gcaggtc 43959
Score = 276 bits (139), Expect = 3e-71
Identities = 139/139 (100%)
Strand = Plus / Minus
Query: 843 agaacttggaagaaggacacagctcagcagtggctgctcactacaatgaactccaggaag 902
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 39914 agaacttggaagaaggacacagctcagcagtggctgctcactacaatgaactccaggaag 39855
Query: 903 ttggtttagagaagcgtagccaaagtcgaattttttacctaagaaactttaataattgga 962
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 39854 ttggtttagagaagcgtagccaaagtcgaattttttacctaagaaactttaataattgga 39795
Query: 963 tgaaaagtgtcctcattgg 981
|||||||||||||||||||
Sbjct: 39794 tgaaaagtgtcctcattgg 39776
Score = 198 bits (100), Expect = 6e-48
Identities = 118/127 (92%)
Strand = Plus / Minus
Query: 980 ggagaatttttagagaaggtgcggcagnnnnnnnnncgtgatatcactgttttggacctg 1039
||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 36844 ggagaatttttagagaaggtgcggcagaaaaaaaaacgtgatatcactgttttggacctg 36785
Query: 1040 ggatgtggtaaaggtggagatttgctcaaatggaaaaagggaagaattgacaagctagtt 1099
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 36784 ggatgtggtaaaggtggagatttgctcaaatggaaaaagggaagaattgacaagctagtt 36725
Query: 1100 tgtactg 1106
|||||||
Sbjct: 36724 tgtactg 36718
>Sscrofa_Chr06
|| Length = 157765593
Score = 250 bits (126), Expect = 2e-63
Identities = 126/126 (100%)
Strand = Plus / Plus
Query: 1221 aggaacttttgatcgataagtttcgtgacccagaaatgtgctttgacatctgcagttgtc 1280
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 89654420 aggaacttttgatcgataagtttcgtgacccagaaatgtgctttgacatctgcagttgtc 89654479
Query: 1281 agttcgtctgccattactcgtttgagtcctacgagcaggctgacatcatgctcagaaatg 1340
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 89654480 agttcgtctgccattactcgtttgagtcctacgagcaggctgacatcatgctcagaaatg 89654539
Query: 1341 cctgtg 1346
||||||
Sbjct: 89654540 cctgtg 89654545
Score = 234 bits (118), Expect = 1e-58
Identities = 118/118 (100%)
Strand = Plus / Plus
Query: 1106 gacattgctgatgtttctgtcaaacagtgtcagcagaggtatgaggacatgaaaaatcgt 1165
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 89653420 gacattgctgatgtttctgtcaaacagtgtcagcagaggtatgaggacatgaaaaatcgt 89653479
Query: 1166 tgtcgtgacaatgaatatattttcagtgcagaatttattactgctgattgttcaaagg 1223
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 89653480 tgtcgtgacaatgaatatattttcagtgcagaatttattactgctgattgttcaaagg 89653537
Score = 137 bits (69), Expect = 2e-29
Identities = 111/127 (87%), Gaps = 1/127 (0%)
Strand = Plus / Plus
Query: 980 ggagaatttttagagaaggtgcggcagnnnnnnnnncgtgatatcactgttttggacctg 1039
||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 89651295 ggagaatttttagagaaggtgcggcagaaaaaaaaacgtgatatcactgttttggacctg 89651354
Query: 1040 ggatgtggtaaaggtggagatttgctcaaatggaaaaagggaagaattgacaagctagtt 1099
| |||||| |||||||||||||||||| |||||||||||| ||||| ||||| ||||||
Sbjct: 89651355 g-atgtggnaaaggtggagatttgctccaatggaaaaaggcaagaactgacagcctagtt 89651413
Query: 1100 tgtactg 1106
|||||||
Sbjct: 89651414 tgtactg 89651420
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 44,618,630
Number of extensions: 411
Number of successful extensions: 411
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 410
Number of HSP's successfully gapped: 7
Length of query: 1346
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1325
Effective length of database: 2,808,413,156
Effective search space: 3721147431700
Effective search space used: 3721147431700
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)