Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003858
(994 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001039721.1| myotubularin-related protein 9 [Bos taurus]. 491 e-139
Alignment gi|NP_001094657.1| myotubularin-related protein 9 [Bos taurus]. 268 7e-72
Alignment gi|NP_001192996.1| myotubularin-related protein 1 [Bos taurus]. 127 2e-29
Alignment gi|XP_002699691.1| PREDICTED: myotubularin related protein 1 [B... 127 2e-29
Alignment gi|NP_001179679.2| myotubularin-related protein 6 [Bos taurus]. 125 8e-29
Alignment gi|XP_002691891.1| PREDICTED: myotubularin related protein 6 [B... 125 8e-29
Alignment gi|NP_001069109.1| myotubularin-related protein 7 [Bos taurus]. 114 1e-25
Alignment gi|NP_001095664.1| myotubularin-related protein 2 [Bos taurus]. 110 2e-24
Alignment gi|XP_872452.4| PREDICTED: myotubularin related protein 8, part... 106 4e-23
Alignment gi|NP_001193354.1| myotubularin [Bos taurus]. 93 3e-19
>ref|NP_001039721.1| myotubularin-related protein 9 [Bos taurus].
Length = 543
Score = 491 bits (1263), Expect = e-139
Identities = 243/277 (87%), Positives = 257/277 (92%)
Frame = +2
Query: 164 MEFSELIRTGQAQAELLRGSEAPPLRGTLCVTGHHLLLSPGAQATPDLWLLLLRSVDSIE 343
MEF+E+IRTGQAQAELLRG E PPLRGTLC+TGHHLLLSPG QATPDLWLLLLR+VDSIE
Sbjct: 1 MEFAEMIRTGQAQAELLRGPEEPPLRGTLCITGHHLLLSPGPQATPDLWLLLLRNVDSIE 60
Query: 344 KRVEGDSGTITLRCKDLRVLQLEIEGVEATLDIARSIEALSSLESVITSFPFFYRPKSLR 523
KRV GDSGTITLRCKDLRVLQL+IEGVEATLDIARSIEALSSLESVITSFPFFYRPK LR
Sbjct: 61 KRVAGDSGTITLRCKDLRVLQLDIEGVEATLDIARSIEALSSLESVITSFPFFYRPKGLR 120
Query: 524 LGDAWHFHPPESYYKRVARETNAWRLSEANEDFSLCPSYPRAVIVPRAVNNDALARSARF 703
LGDAWHFHPPE YYKRVARETNAWRLSEANEDFSLCPSYPRAVIVPRAV++ A+ARSARF
Sbjct: 121 LGDAWHFHPPECYYKRVARETNAWRLSEANEDFSLCPSYPRAVIVPRAVDDSAVARSARF 180
Query: 704 RQGGRFPVLSYYHAPSGTAVLRSSQPLTGPQKRRCAEDEELLRAVLAGARPGAQGFIVDT 883
RQGGRFPVLSYYHAPSGT +LR+ QPLTGPQKRRC+EDEELLRAVLAGARPGA+GFIVDT
Sbjct: 181 RQGGRFPVLSYYHAPSGTVLLRAGQPLTGPQKRRCSEDEELLRAVLAGARPGARGFIVDT 240
Query: 884 RLTQAAKQARMTGGGTESKAAYPGGNGCTGPWKGGGP 994
R QAAKQARMTGGGTE+KAAYPG P + G P
Sbjct: 241 RSPQAAKQARMTGGGTEAKAAYPGWKRLHRPLERGRP 277
>ref|NP_001094657.1| myotubularin-related protein 9 [Bos taurus].
Length = 549
Score = 268 bits (684), Expect = 7e-72
Identities = 134/263 (50%), Positives = 180/263 (68%)
Frame = +2
Query: 164 MEFSELIRTGQAQAELLRGSEAPPLRGTLCVTGHHLLLSPGAQATPDLWLLLLRSVDSIE 343
MEF+ELI+T + +L P + GTLC+TGHHL+LS T +LWLL ++D+I+
Sbjct: 1 MEFAELIKTPRVDNVVLHRPFYPAVEGTLCLTGHHLILSSRQDNTEELWLLH-SNIDAID 59
Query: 344 KRVEGDSGTITLRCKDLRVLQLEIEGVEATLDIARSIEALSSLESVITSFPFFYRPKSLR 523
KR G GTI ++CKD R++QL+I G+E L+IA SIEALS+L+S+ +PFFYRP
Sbjct: 60 KRFVGPLGTIIIKCKDFRIIQLDIPGMEECLNIASSIEALSTLDSITLMYPFFYRPMFEV 119
Query: 524 LGDAWHFHPPESYYKRVARETNAWRLSEANEDFSLCPSYPRAVIVPRAVNNDALARSARF 703
+ D WH PE ++ + + WRLS N++FS+CPSYP AVIVP+A+++DAL + A F
Sbjct: 120 IEDGWHSFLPEQEFELYSSTISEWRLSYVNKEFSVCPSYPPAVIVPKAIDDDALRKVATF 179
Query: 704 RQGGRFPVLSYYHAPSGTAVLRSSQPLTGPQKRRCAEDEELLRAVLAGARPGAQGFIVDT 883
R GGRFPVLSYYH +G ++RS QPLTG RRC EDE+L+ A L R G +G+I+DT
Sbjct: 180 RHGGRFPVLSYYHKKNGMVIMRSGQPLTGTNGRRCKEDEKLINATL---RAGKRGYIIDT 236
Query: 884 RLTQAAKQARMTGGGTESKAAYP 952
R A+QAR GGG E +A YP
Sbjct: 237 RPLNIAQQARAKGGGFEQEAHYP 259
>ref|NP_001192996.1| myotubularin-related protein 1 [Bos taurus].
Length = 667
Score = 127 bits (318), Expect = 2e-29
Identities = 75/215 (34%), Positives = 115/215 (53%), Gaps = 3/215 (1%)
Frame = +2
Query: 317 LLRSVDSIEKRVEGDSGT-ITLRCKDLRVLQLEIEGVEAT-LDIARSIEALS-SLESVIT 487
++ V+ I + GD+ I + CKD+R L+L + E + L I ++ + L + T
Sbjct: 156 VISRVEKIGAQSHGDNSCGIEIVCKDMRNLRLAYKQEEQSKLGIFENLNKHAFPLSNGQT 215
Query: 488 SFPFFYRPKSLRLGDAWHFHPPESYYKRVARETNAWRLSEANEDFSLCPSYPRAVIVPRA 667
F F Y+ K G W + P S YKR +W++S+ N ++ LC +YP ++VP +
Sbjct: 216 LFAFNYKEKFPVNG--WKVYDPVSEYKRQGLPNESWKISKVNSNYELCDTYPAIIVVPTS 273
Query: 668 VNNDALARSARFRQGGRFPVLSYYHAPSGTAVLRSSQPLTGPQKRRCAEDEELLRAVLAG 847
V +D L++ A FR GR PVLS+ H S + R SQPL GP +RC EDE+ L+ ++
Sbjct: 274 VKDDDLSKVAAFRAKGRIPVLSWIHPESQATITRCSQPLVGPNDKRCKEDEKYLQTIMDA 333
Query: 848 ARPGAQGFIVDTRLTQAAKQARMTGGGTESKAAYP 952
+ I D R A + GGG ES++AYP
Sbjct: 334 NAQAHKLIIFDARQNSVADTNKAKGGGYESESAYP 368
>ref|XP_002699691.1| PREDICTED: myotubularin related protein 1 [Bos taurus].
Length = 667
Score = 127 bits (318), Expect = 2e-29
Identities = 75/215 (34%), Positives = 115/215 (53%), Gaps = 3/215 (1%)
Frame = +2
Query: 317 LLRSVDSIEKRVEGDSGT-ITLRCKDLRVLQLEIEGVEAT-LDIARSIEALS-SLESVIT 487
++ V+ I + GD+ I + CKD+R L+L + E + L I ++ + L + T
Sbjct: 156 VISRVEKIGAQSHGDNSCGIEIVCKDMRNLRLAYKQEEQSKLGIFENLNKHAFPLSNGQT 215
Query: 488 SFPFFYRPKSLRLGDAWHFHPPESYYKRVARETNAWRLSEANEDFSLCPSYPRAVIVPRA 667
F F Y+ K G W + P S YKR +W++S+ N ++ LC +YP ++VP +
Sbjct: 216 LFAFNYKEKFPVNG--WKVYDPVSEYKRQGLPNESWKISKVNSNYELCDTYPAIIVVPTS 273
Query: 668 VNNDALARSARFRQGGRFPVLSYYHAPSGTAVLRSSQPLTGPQKRRCAEDEELLRAVLAG 847
V +D L++ A FR GR PVLS+ H S + R SQPL GP +RC EDE+ L+ ++
Sbjct: 274 VKDDDLSKVAAFRAKGRIPVLSWIHPESQATITRCSQPLVGPNDKRCKEDEKYLQTIMDA 333
Query: 848 ARPGAQGFIVDTRLTQAAKQARMTGGGTESKAAYP 952
+ I D R A + GGG ES++AYP
Sbjct: 334 NAQAHKLIIFDARQNSVADTNKAKGGGYESESAYP 368
>ref|NP_001179679.2| myotubularin-related protein 6 [Bos taurus].
Length = 621
Score = 125 bits (313), Expect = 8e-29
Identities = 83/244 (34%), Positives = 118/244 (48%), Gaps = 6/244 (2%)
Frame = +2
Query: 236 LRGTLCVTGHHLLLSPGAQATPDLWLLLLRSVDSIEKRVEGDSGT-ITLRCKDLRVLQLE 412
L GTL +T HLL Q + W+L + S+EK SG + ++CK+ R +
Sbjct: 25 LTGTLYLTATHLLFIDAHQK--ETWILH-HHIASVEKLALTTSGCPLVIQCKNFRTVHFI 81
Query: 413 IEGVEATLDIARSIEALSSLESVITSFPFFYRPKSLRLGDA-----WHFHPPESYYKRVA 577
+ DI S+ LS + F Y PK DA W YKR+
Sbjct: 82 VPRERDCHDIYNSLLQLSKQAKYEDLYAFSYNPKQ---NDAERLRGWELIDLAEEYKRMG 138
Query: 578 RETNAWRLSEANEDFSLCPSYPRAVIVPRAVNNDALARSARFRQGGRFPVLSYYHAPSGT 757
+ W+LS+AN ++ +C +YPR + VPR + + S++FR GRFPVLSYYH
Sbjct: 139 VPNSNWQLSDANREYKICETYPRELYVPRIASKPIIVGSSKFRSKGRFPVLSYYHQSKEA 198
Query: 758 AVLRSSQPLTGPQKRRCAEDEELLRAVLAGARPGAQGFIVDTRLTQAAKQARMTGGGTES 937
A+ R SQPL+G RC EDE LL+A+ +++DTR A R G G E+
Sbjct: 199 AICRCSQPLSG-FSARCLEDEHLLQAISKANPANRYMYVMDTRPRLNAMANRAAGKGYEN 257
Query: 938 KAAY 949
+ Y
Sbjct: 258 EDNY 261
>ref|XP_002691891.1| PREDICTED: myotubularin related protein 6 [Bos taurus].
Length = 621
Score = 125 bits (313), Expect = 8e-29
Identities = 83/244 (34%), Positives = 118/244 (48%), Gaps = 6/244 (2%)
Frame = +2
Query: 236 LRGTLCVTGHHLLLSPGAQATPDLWLLLLRSVDSIEKRVEGDSGT-ITLRCKDLRVLQLE 412
L GTL +T HLL Q + W+L + S+EK SG + ++CK+ R +
Sbjct: 25 LTGTLYLTATHLLFIDAHQK--ETWILH-HHIASVEKLALTTSGCPLVIQCKNFRTVHFI 81
Query: 413 IEGVEATLDIARSIEALSSLESVITSFPFFYRPKSLRLGDA-----WHFHPPESYYKRVA 577
+ DI S+ LS + F Y PK DA W YKR+
Sbjct: 82 VPRERDCHDIYNSLLQLSKQAKYEDLYAFSYNPKQ---NDAERLRGWELIDLAEEYKRMG 138
Query: 578 RETNAWRLSEANEDFSLCPSYPRAVIVPRAVNNDALARSARFRQGGRFPVLSYYHAPSGT 757
+ W+LS+AN ++ +C +YPR + VPR + + S++FR GRFPVLSYYH
Sbjct: 139 VPNSNWQLSDANREYKICETYPRELYVPRIASKPIIVGSSKFRSKGRFPVLSYYHQSKEA 198
Query: 758 AVLRSSQPLTGPQKRRCAEDEELLRAVLAGARPGAQGFIVDTRLTQAAKQARMTGGGTES 937
A+ R SQPL+G RC EDE LL+A+ +++DTR A R G G E+
Sbjct: 199 AICRCSQPLSG-FSARCLEDEHLLQAISKANPANRYMYVMDTRPRLNAMANRAAGKGYEN 257
Query: 938 KAAY 949
+ Y
Sbjct: 258 EDNY 261
>ref|NP_001069109.1| myotubularin-related protein 7 [Bos taurus].
Length = 660
Score = 114 bits (285), Expect = 1e-25
Identities = 84/264 (31%), Positives = 130/264 (49%), Gaps = 6/264 (2%)
Frame = +2
Query: 176 ELIRTGQAQAELL--RGSEAPPLRGTLCVTGHHLLLSPGAQATPDLWLLLLRSVDSIEKR 349
E IRT + + L R S GTL +T H++ A T +L + +IEK+
Sbjct: 2 EHIRTPKVENVRLVDRISSKKAALGTLYLTATHVIFVETAPDTRKETWILHSQIATIEKQ 61
Query: 350 VEGDSGT-ITLRCKDLRVLQLEIEGVEATLDIARSIEALSSLESVITSFPFFYRPKSLR- 523
+G + +RCK+ ++LQL I D+ S+ L+ + F + PK R
Sbjct: 62 ATTATGCPLLIRCKNFQLLQLIIPQERDCHDVYISLIRLARPVKYEELYCFSFNPKLDRE 121
Query: 524 -LGDAWHFHPPESYYKRVARETNAWRLSEANEDFSLCPSYPRAVIVPRAVNNDALARSAR 700
W YKR+ W+LS+ N ++ +C SYP + VP++ + S++
Sbjct: 122 EREQGWMLIELSEEYKRMGLPNEYWQLSDVNREYRICDSYPTELYVPKSATAHIIVGSSK 181
Query: 701 FRQGGRFPVLSYYHAPSGTAVLRSSQPLTGPQKRRCAEDEELLRAVLAGARPGAQG-FIV 877
FR RFP LSYY+ + ++ RSSQPL+G RC EDE++L+A+ A PG+ ++V
Sbjct: 182 FRSRRRFPALSYYYKDNHASICRSSQPLSG-FSARCLEDEQMLQAI-RKANPGSDFLYVV 239
Query: 878 DTRLTQAAKQARMTGGGTESKAAY 949
DTR A R G G E++ Y
Sbjct: 240 DTRPKLNAMANRAAGKGYENEDNY 263
>ref|NP_001095664.1| myotubularin-related protein 2 [Bos taurus].
Length = 643
Score = 110 bits (275), Expect = 2e-24
Identities = 76/246 (30%), Positives = 119/246 (48%), Gaps = 8/246 (3%)
Frame = +2
Query: 236 LRGTLCVTGHHLLLSPGAQATPDLWLLLLRSVDSIEK------RVEGDSGTITLRCKDLR 397
+RGTL VT + L + P + L + +EK R E G T+ CKD+R
Sbjct: 101 VRGTLTVTNYRLYFKSMERDPPFVLDASLGVISRVEKIGGASSRGENSYGLETV-CKDIR 159
Query: 398 VLQL--EIEGVEATLDIARSIEALSSLESVITSFPFFYRPKSLRLGDAWHFHPPESYYKR 571
L+ + EG ++ + + ++ F F Y K + + W + S Y+R
Sbjct: 160 NLRFAHKPEGRTRRSIFENLMKYAFPVSNNLSLFAFEY--KEVFPENGWKLYDSLSEYRR 217
Query: 572 VARETNAWRLSEANEDFSLCPSYPRAVIVPRAVNNDALARSARFRQGGRFPVLSYYHAPS 751
+WR+++ NE + LC +YP ++VP + ++ L R A FR GR PVLS+ H S
Sbjct: 218 QGIPNESWRITKVNERYELCDTYPALLVVPANIPDEELKRVASFRSRGRIPVLSWIHPES 277
Query: 752 GTAVLRSSQPLTGPQKRRCAEDEELLRAVLAGARPGAQGFIVDTRLTQAAKQARMTGGGT 931
+ R SQP+ G +R EDE+ L+A++ + FI D R + A + GGG
Sbjct: 278 QATITRCSQPMVGVSGKRSKEDEKYLQAIMDSNAQSHKIFIFDARPSVNAVANKAKGGGY 337
Query: 932 ESKAAY 949
ES+ AY
Sbjct: 338 ESEDAY 343
>ref|XP_872452.4| PREDICTED: myotubularin related protein 8, partial [Bos taurus].
Length = 532
Score = 106 bits (264), Expect = 4e-23
Identities = 74/244 (30%), Positives = 119/244 (48%), Gaps = 5/244 (2%)
Frame = +2
Query: 233 PLRGTLCVTGHHLL-LSPGAQATPDLWLLLLRSVDSIEKRVEGDSGT-ITLRCKDLRVLQ 406
P G+L +T HL+ + A + W+ L + ++EK G + LRCK+ RV
Sbjct: 62 PANGSLYLTATHLIYVEASGTARKETWIAL-HHIATVEKLPVTSLGCPLILRCKNFRVAH 120
Query: 407 LEIEGVEATLDIARSIEALSSLESVITSFPFFYRPKSLR--LGDAWHFHPPESYYKRVAR 580
+E ++ S+ LS E + F Y PK + W S + R+
Sbjct: 121 FVLESDIVCHEVYISLLKLSQPELPEDLYAFSYNPKFSKDMRESGWKLIDQTSDFGRMGI 180
Query: 581 ETNAWRLSEANEDFSLCPSYPRAVIVPRAVNNDALARSARFRQGGRFPVLSYYHAPSGTA 760
W +++AN ++ +C +YP +++P++V + S++FR R PVLSY + + A
Sbjct: 181 PNRYWTITDANRNYEICSTYPLEIVIPKSVTLGTVVGSSKFRSKERVPVLSYLYKENNAA 240
Query: 761 VLRSSQPLTGPQKRRCAEDEELLRAVLAGARPGAQG-FIVDTRLTQAAKQARMTGGGTES 937
+ R SQPL+G RC +DE LL A+ PG+Q ++VDTR A R G G E+
Sbjct: 241 ICRCSQPLSG-FYTRCIDDELLLEAI-RQTNPGSQFLYVVDTRPKLNALANRAAGKGYEN 298
Query: 938 KAAY 949
+ Y
Sbjct: 299 EDNY 302
>ref|NP_001193354.1| myotubularin [Bos taurus].
Length = 603
Score = 93.2 bits (230), Expect = 3e-19
Identities = 74/248 (29%), Positives = 114/248 (45%), Gaps = 9/248 (3%)
Frame = +2
Query: 233 PLRGTLCVTGHHLLLSPGAQATPDLWLLLLRSVDSIEK------RVEGDSGTITLRCKDL 394
P++G + +T + L L + + + L + IEK R E G + + CKDL
Sbjct: 58 PIKGRVYITNYRLYLRSLETDSALILDVPLGVISRIEKMGGATSRGENSYG-LDITCKDL 116
Query: 395 RVLQ--LEIEGVEATLDIARSIEALSSLESVITSFPFFYRPKSLRLG-DAWHFHPPESYY 565
R L+ L+ EG + D+ + + + S P F + D W + P Y
Sbjct: 117 RNLRFALKQEG-HSRRDMFEILTRYAF--PLAHSLPIFAFLNEEKFNVDGWTVYNPVEEY 173
Query: 566 KRVARETNAWRLSEANEDFSLCPSYPRAVIVPRAVNNDALARSARFRQGGRFPVLSYYHA 745
+R + WR++ N+ + LC +YP ++VP +++ L R A FR R PVLS+ H
Sbjct: 174 RRQGLPNHHWRITFINKCYKLCDTYPALLVVPYRASDEDLRRVATFRSRNRIPVLSWIHP 233
Query: 746 PSGTAVLRSSQPLTGPQKRRCAEDEELLRAVLAGARPGAQGFIVDTRLTQAAKQARMTGG 925
+ T ++R SQPL G +R EDE L + R + I D R A + TGG
Sbjct: 234 ENKTVIVRCSQPLVGMSGKRNKEDERYLDVIRETNRQVNKLTIYDARPNVNAVANKATGG 293
Query: 926 GTESKAAY 949
G ES Y
Sbjct: 294 GYESDDVY 301
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 35,835,901
Number of extensions: 953364
Number of successful extensions: 4287
Number of sequences better than 1.0e-05: 12
Number of HSP's gapped: 4270
Number of HSP's successfully gapped: 12
Length of query: 331
Length of database: 17,681,374
Length adjustment: 103
Effective length of query: 228
Effective length of database: 14,273,310
Effective search space: 3254314680
Effective search space used: 3254314680
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003858
(994 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_848653.1| PREDICTED: similar to myotubularin-related prot... 265 5e-71
Alignment gi|XP_856722.1| PREDICTED: similar to myotubularin-related prot... 259 3e-69
Alignment gi|XP_854648.1| PREDICTED: similar to Myotubularin-related prot... 216 2e-56
Alignment gi|XP_549331.2| PREDICTED: similar to myotubularin-related prot... 132 5e-31
Alignment gi|XP_534530.2| PREDICTED: similar to Myotubularin-related prot... 123 3e-28
Alignment gi|XP_532827.2| PREDICTED: similar to myotubularin related prot... 118 1e-26
Alignment gi|XP_848239.1| PREDICTED: similar to myotubularin-related prot... 107 2e-23
Alignment gi|XP_855638.1| PREDICTED: similar to Myotubularin-related prot... 107 2e-23
Alignment gi|XP_855209.1| PREDICTED: similar to Myotubularin [Canis famil... 96 7e-20
Alignment gi|XP_867029.1| PREDICTED: similar to myotubularin related prot... 74 2e-13
>ref|XP_848653.1| PREDICTED: similar to myotubularin-related protein 9 isoform 1
[Canis familiaris].
Length = 549
Score = 265 bits (677), Expect = 5e-71
Identities = 131/263 (49%), Positives = 180/263 (68%)
Frame = +2
Query: 164 MEFSELIRTGQAQAELLRGSEAPPLRGTLCVTGHHLLLSPGAQATPDLWLLLLRSVDSIE 343
MEF+ELI+T + +L P + GTLC+TGHHL+LS T +LWLL ++D+I+
Sbjct: 1 MEFAELIKTPRVDNVVLHRPFYPAVEGTLCLTGHHLILSSRQDNTEELWLLH-SNIDAID 59
Query: 344 KRVEGDSGTITLRCKDLRVLQLEIEGVEATLDIARSIEALSSLESVITSFPFFYRPKSLR 523
KR G GTI ++CKD R++QL+I G+E L+IA SIEALS+L+S+ +PFFYRP
Sbjct: 60 KRFVGPLGTIIIKCKDFRIIQLDIPGMEECLNIASSIEALSTLDSITLMYPFFYRPMFEV 119
Query: 524 LGDAWHFHPPESYYKRVARETNAWRLSEANEDFSLCPSYPRAVIVPRAVNNDALARSARF 703
+ D WH PE ++ + T+ WRLS N++F++CPSYP VIVP++++++AL + A F
Sbjct: 120 IEDGWHSFLPEQEFELYSSATSEWRLSYVNKEFAVCPSYPPIVIVPKSIDDEALRKVATF 179
Query: 704 RQGGRFPVLSYYHAPSGTAVLRSSQPLTGPQKRRCAEDEELLRAVLAGARPGAQGFIVDT 883
R GGRFPVLSYYH +G ++RS QPLTG RRC EDE+L+ A L R G +G+I+DT
Sbjct: 180 RHGGRFPVLSYYHKKNGMVIMRSGQPLTGTNGRRCKEDEKLINATL---RAGKRGYIIDT 236
Query: 884 RLTQAAKQARMTGGGTESKAAYP 952
R A+QAR GGG E +A YP
Sbjct: 237 RSLNVAQQARAKGGGFEQEAHYP 259
>ref|XP_856722.1| PREDICTED: similar to myotubularin-related protein 9 isoform 2
[Canis familiaris].
Length = 554
Score = 259 bits (662), Expect = 3e-69
Identities = 131/268 (48%), Positives = 180/268 (67%), Gaps = 5/268 (1%)
Frame = +2
Query: 164 MEFSELIRTGQAQAELLRGSEAPPLRGTLCVTGHHLLLSPGAQATPDLWLLLLRSVDSIE 343
MEF+ELI+T + +L P + GTLC+TGHHL+LS T +LWLL ++D+I+
Sbjct: 1 MEFAELIKTPRVDNVVLHRPFYPAVEGTLCLTGHHLILSSRQDNTEELWLLH-SNIDAID 59
Query: 344 KRVE-----GDSGTITLRCKDLRVLQLEIEGVEATLDIARSIEALSSLESVITSFPFFYR 508
KR G GTI ++CKD R++QL+I G+E L+IA SIEALS+L+S+ +PFFYR
Sbjct: 60 KRPSNIKFVGPLGTIIIKCKDFRIIQLDIPGMEECLNIASSIEALSTLDSITLMYPFFYR 119
Query: 509 PKSLRLGDAWHFHPPESYYKRVARETNAWRLSEANEDFSLCPSYPRAVIVPRAVNNDALA 688
P + D WH PE ++ + T+ WRLS N++F++CPSYP VIVP++++++AL
Sbjct: 120 PMFEVIEDGWHSFLPEQEFELYSSATSEWRLSYVNKEFAVCPSYPPIVIVPKSIDDEALR 179
Query: 689 RSARFRQGGRFPVLSYYHAPSGTAVLRSSQPLTGPQKRRCAEDEELLRAVLAGARPGAQG 868
+ A FR GGRFPVLSYYH +G ++RS QPLTG RRC EDE+L+ A L R G +G
Sbjct: 180 KVATFRHGGRFPVLSYYHKKNGMVIMRSGQPLTGTNGRRCKEDEKLINATL---RAGKRG 236
Query: 869 FIVDTRLTQAAKQARMTGGGTESKAAYP 952
+I+DTR A+QAR GGG E +A YP
Sbjct: 237 YIIDTRSLNVAQQARAKGGGFEQEAHYP 264
>ref|XP_854648.1| PREDICTED: similar to Myotubularin-related protein 9 [Canis
familiaris].
Length = 164
Score = 216 bits (551), Expect = 2e-56
Identities = 116/165 (70%), Positives = 128/165 (77%), Gaps = 20/165 (12%)
Frame = +2
Query: 452 IEALSSLESVITSFPFFYRPKSLRLGDAWHFHPPESYYKRVARETNAWRLSEANEDFSLC 631
+EALSSLESVITSFPFFYRPK LRLGDAWHFHPPE Y +RVARETNAWRLSE NE+FSLC
Sbjct: 1 MEALSSLESVITSFPFFYRPKGLRLGDAWHFHPPERY-ERVARETNAWRLSEVNENFSLC 59
Query: 632 PSYPRAVIVPRAVNNDALARSARFRQGGRFPVLSYYHAPSG------------------- 754
PSYPRAVIV RAV + ALA S+RFR+GGR PVLS++ AP+
Sbjct: 60 PSYPRAVIVARAVKDRALALSSRFRRGGRCPVLSHHRAPANRGPTHPDSATKTNCGPSRP 119
Query: 755 -TAVLRSSQPLTGPQKRRCAEDEELLRAVLAGARPGAQGFIVDTR 886
+LRSSQPLTGPQKR CAEDEELLRA AGA PGA+GFI+DTR
Sbjct: 120 FPVLLRSSQPLTGPQKRCCAEDEELLRA--AGAGPGARGFILDTR 162
>ref|XP_549331.2| PREDICTED: similar to myotubularin-related protein 1 isoform 1
[Canis familiaris].
Length = 670
Score = 132 bits (332), Expect = 5e-31
Identities = 85/244 (34%), Positives = 128/244 (52%), Gaps = 7/244 (2%)
Frame = +2
Query: 242 GTLCVTGHHLLLSPGAQATP----DLWLLLLRSVDSIEKRVEGDSGT-ITLRCKDLRVLQ 406
GTL VT L A+ P D+ L ++ V+ I + GD+ I + CKD+R L+
Sbjct: 131 GTLTVTDFKLYFK-SAERDPNFILDVPLGVISRVEKIGAQSHGDNSCGIEIVCKDMRNLR 189
Query: 407 LEIEGVEAT-LDIARSIEALS-SLESVITSFPFFYRPKSLRLGDAWHFHPPESYYKRVAR 580
L + E + L I ++ + L + T F F Y+ K G W + P S YKR
Sbjct: 190 LAYKQEEQSKLGIFENLNKHAFPLSNGQTLFAFSYKEKFPVNG--WKVYDPVSEYKRQGL 247
Query: 581 ETNAWRLSEANEDFSLCPSYPRAVIVPRAVNNDALARSARFRQGGRFPVLSYYHAPSGTA 760
+W++S+ N ++ LC +YP ++VP +V +D L++ A FR GR PVLS+ H S
Sbjct: 248 PNESWKISKVNSNYELCDTYPAVIVVPTSVKDDDLSKVAAFRAKGRVPVLSWIHPESQAT 307
Query: 761 VLRSSQPLTGPQKRRCAEDEELLRAVLAGARPGAQGFIVDTRLTQAAKQARMTGGGTESK 940
++R SQPL GP +RC EDE+ L+ ++ + I D R A + GGG ES+
Sbjct: 308 IIRCSQPLVGPNDKRCKEDEKYLQTIMDANAQSHKLIIFDARQNSVADTNKAKGGGYESE 367
Query: 941 AAYP 952
+AYP
Sbjct: 368 SAYP 371
>ref|XP_534530.2| PREDICTED: similar to Myotubularin-related protein 6 [Canis
familiaris].
Length = 779
Score = 123 bits (308), Expect = 3e-28
Identities = 88/254 (34%), Positives = 126/254 (49%), Gaps = 8/254 (3%)
Frame = +2
Query: 149 PTAGGMEFS-ELIRTGQA-QAELLR--GSEAPPLRGTLCVTGHHLLLSPGAQATPDLWLL 316
P AGG+ E IRT + Q +LL + L GTL +T HLL Q + W+L
Sbjct: 112 PVAGGLVLGMEHIRTTKVEQVKLLDRFSTSNKSLTGTLYLTATHLLFIDSHQK--ETWIL 169
Query: 317 LLRSVDSIEKRVEGDSGT-ITLRCKDLRVLQLEIEGVEATLDIARSIEALSSLESVITSF 493
+ +EK SG + ++CK+ R++ + DI S+ LS +
Sbjct: 170 H-HHIALVEKLALTTSGCPLVIQCKNFRIVHFIVPRERDCHDIYNSLLQLSKQAKYEDLY 228
Query: 494 PFFYRPK---SLRLGDAWHFHPPESYYKRVARETNAWRLSEANEDFSLCPSYPRAVIVPR 664
F Y PK S RL W YKR+ + W+LS+AN ++ +C +YPR + VPR
Sbjct: 229 AFSYNPKQNDSERL-QGWQLIDLAEEYKRMGVPNSNWQLSDANREYKICETYPRELYVPR 287
Query: 665 AVNNDALARSARFRQGGRFPVLSYYHAPSGTAVLRSSQPLTGPQKRRCAEDEELLRAVLA 844
+ + S++FR GRFPVLSYYH A+ R SQPL+G RC EDE LL+A+
Sbjct: 288 IASKPIIVGSSKFRSKGRFPVLSYYHQNKEAAICRCSQPLSG-FSARCLEDEHLLQAISK 346
Query: 845 GARPGAQGFIVDTR 886
+++DTR
Sbjct: 347 ANPVNRYMYVMDTR 360
>ref|XP_532827.2| PREDICTED: similar to myotubularin related protein 7 [Canis
familiaris].
Length = 684
Score = 118 bits (295), Expect = 1e-26
Identities = 78/240 (32%), Positives = 121/240 (50%), Gaps = 4/240 (1%)
Frame = +2
Query: 242 GTLCVTGHHLLLSPGAQATPDLWLLLLRSVDSIEKRVEGDSGT-ITLRCKDLRVLQLEIE 418
GTL +T H++ A T +L + +IEK+ +G + +RCK+ ++LQL I
Sbjct: 50 GTLYLTATHVIFVENAPDTRKETWILHSQISTIEKQATTATGCPLLIRCKNFQLLQLIIP 109
Query: 419 GVEATLDIARSIEALSSLESVITSFPFFYRPK--SLRLGDAWHFHPPESYYKRVARETNA 592
D+ S+ L+ + F + PK W YKR+ N
Sbjct: 110 QERDCHDVYISLIRLARPVKYEELYCFSFNPKLDKEEREQGWMLIDLSEEYKRMGLPNNY 169
Query: 593 WRLSEANEDFSLCPSYPRAVIVPRAVNNDALARSARFRQGGRFPVLSYYHAPSGTAVLRS 772
W+LS+ N D+ +C SYP + VP++ + S++FR RFP LSYY+ + ++ RS
Sbjct: 170 WQLSDVNRDYRVCDSYPTELYVPKSATAHIIVGSSKFRSRRRFPALSYYYKDNHASICRS 229
Query: 773 SQPLTGPQKRRCAEDEELLRAVLAGARPGAQG-FIVDTRLTQAAKQARMTGGGTESKAAY 949
SQPL+G RC EDE++L+A+ A PG+ ++VDTR A R G G E++ Y
Sbjct: 230 SQPLSG-FSARCLEDEQMLQAI-RKANPGSDFIYVVDTRPKLNAMANRAAGKGYENEDNY 287
>ref|XP_848239.1| PREDICTED: similar to myotubularin-related protein 2 isoform 1
isoform 1 [Canis familiaris].
Length = 643
Score = 107 bits (267), Expect = 2e-23
Identities = 77/247 (31%), Positives = 117/247 (47%), Gaps = 9/247 (3%)
Frame = +2
Query: 236 LRGTLCVTGHHLLLSPGAQATPDLWLLLLRSVDSIEK------RVEGDSGTITLRCKDLR 397
+RGTL VT + L + P + L + +EK R E G T+ CKD+R
Sbjct: 101 VRGTLTVTNYRLYFKSMERDPPFVLDASLGVISRVEKIGGASSRGENSYGLETV-CKDIR 159
Query: 398 VLQLEIEGVEATLDIARSI--EALSSLESVITSFPFF-YRPKSLRLGDAWHFHPPESYYK 568
L+ + T RSI + V + P F + K + + W + Y+
Sbjct: 160 NLRFAHKPEGRT---RRSIFENLMKYAFPVSNNLPLFAFEYKEIFPENGWKLYDSLLEYR 216
Query: 569 RVARETNAWRLSEANEDFSLCPSYPRAVIVPRAVNNDALARSARFRQGGRFPVLSYYHAP 748
R +WR+++ NE + LC +YP ++VP + ++ L R A FR GR PVLS+ H
Sbjct: 217 RQGIPNESWRITKINERYELCDTYPALLVVPANIPDEELKRVASFRSRGRIPVLSWIHPE 276
Query: 749 SGTAVLRSSQPLTGPQKRRCAEDEELLRAVLAGARPGAQGFIVDTRLTQAAKQARMTGGG 928
S + R SQP+ G +R EDE+ L+A++ + FI D R + A + GGG
Sbjct: 277 SQATITRCSQPMVGVSGKRSKEDEKYLQAIMDSNAQSHKIFIFDARPSVNAVANKAKGGG 336
Query: 929 TESKAAY 949
ES+ AY
Sbjct: 337 YESEDAY 343
>ref|XP_855638.1| PREDICTED: similar to Myotubularin-related protein 2 isoform 2
[Canis familiaris].
Length = 571
Score = 107 bits (267), Expect = 2e-23
Identities = 77/247 (31%), Positives = 117/247 (47%), Gaps = 9/247 (3%)
Frame = +2
Query: 236 LRGTLCVTGHHLLLSPGAQATPDLWLLLLRSVDSIEK------RVEGDSGTITLRCKDLR 397
+RGTL VT + L + P + L + +EK R E G T+ CKD+R
Sbjct: 29 VRGTLTVTNYRLYFKSMERDPPFVLDASLGVISRVEKIGGASSRGENSYGLETV-CKDIR 87
Query: 398 VLQLEIEGVEATLDIARSI--EALSSLESVITSFPFF-YRPKSLRLGDAWHFHPPESYYK 568
L+ + T RSI + V + P F + K + + W + Y+
Sbjct: 88 NLRFAHKPEGRT---RRSIFENLMKYAFPVSNNLPLFAFEYKEIFPENGWKLYDSLLEYR 144
Query: 569 RVARETNAWRLSEANEDFSLCPSYPRAVIVPRAVNNDALARSARFRQGGRFPVLSYYHAP 748
R +WR+++ NE + LC +YP ++VP + ++ L R A FR GR PVLS+ H
Sbjct: 145 RQGIPNESWRITKINERYELCDTYPALLVVPANIPDEELKRVASFRSRGRIPVLSWIHPE 204
Query: 749 SGTAVLRSSQPLTGPQKRRCAEDEELLRAVLAGARPGAQGFIVDTRLTQAAKQARMTGGG 928
S + R SQP+ G +R EDE+ L+A++ + FI D R + A + GGG
Sbjct: 205 SQATITRCSQPMVGVSGKRSKEDEKYLQAIMDSNAQSHKIFIFDARPSVNAVANKAKGGG 264
Query: 929 TESKAAY 949
ES+ AY
Sbjct: 265 YESEDAY 271
>ref|XP_855209.1| PREDICTED: similar to Myotubularin [Canis familiaris].
Length = 603
Score = 95.5 bits (236), Expect = 7e-20
Identities = 74/248 (29%), Positives = 117/248 (47%), Gaps = 9/248 (3%)
Frame = +2
Query: 233 PLRGTLCVTGHHLLLSPGAQATPDLWLLLLRSVDSIEK------RVEGDSGTITLRCKDL 394
P++G + +T + L L + + + L + IEK R E G + + CKD+
Sbjct: 58 PIKGRVYITNYRLYLRSLETDSALILDVPLGVISRIEKMGGATSRGENSYG-LDITCKDM 116
Query: 395 RVLQ--LEIEGVEATLDIARSIEALSSLESVITSFPFFYRPKSLRLG-DAWHFHPPESYY 565
R L+ L+ EG + D+ + + + S P F + D W + P Y
Sbjct: 117 RNLRFALKQEG-HSRRDMFEILTRYAF--PLAHSLPIFAFLNEEKFNVDGWTVYNPVEEY 173
Query: 566 KRVARETNAWRLSEANEDFSLCPSYPRAVIVPRAVNNDALARSARFRQGGRFPVLSYYHA 745
+R + WR++ N+ + LC +YP ++VP ++D L R A FR R PVLS+ H
Sbjct: 174 RRQGLPNHHWRITFINKCYELCDTYPALLVVPYRASDDDLRRVATFRSRNRIPVLSWIHP 233
Query: 746 PSGTAVLRSSQPLTGPQKRRCAEDEELLRAVLAGARPGAQGFIVDTRLTQAAKQARMTGG 925
+ T ++R SQPL G +R +DE+ L + R ++ I D R A + TGG
Sbjct: 234 ENKTVIVRCSQPLVGMSGKRNKDDEKYLDVIRETNRQISKLTIYDARPNVNAVANKATGG 293
Query: 926 GTESKAAY 949
G ES AY
Sbjct: 294 GYESDDAY 301
>ref|XP_867029.1| PREDICTED: similar to myotubularin related protein 4 isoform 5
[Canis familiaris].
Length = 1039
Score = 73.9 bits (180), Expect = 2e-13
Identities = 57/186 (30%), Positives = 85/186 (45%), Gaps = 13/186 (6%)
Frame = +2
Query: 320 LRSVDSIEKRVEGDSGTITLRCKDLRVLQLEIEGVEATLD-IARSIEALSSLESVITSFP 496
LR +DS+E R D + + CKD +V++ + + ++R A + F
Sbjct: 73 LRMIDSVESR---DMFQLHIACKDSKVVRCHFSTFKQCQEWLSRLSRATARPAKPEDLFA 129
Query: 497 FFYRPKSLRLGDA-WHFH---PPESYYKRVARET--------NAWRLSEANEDFSLCPSY 640
F Y L L + H H P E R E N WR+S N ++ LCPSY
Sbjct: 130 FAYHAWCLGLTEEDQHTHLCQPGEHIRCRQEAELTRMGFDLQNVWRVSHINSNYKLCPSY 189
Query: 641 PRAVIVPRAVNNDALARSARFRQGGRFPVLSYYHAPSGTAVLRSSQPLTGPQKRRCAEDE 820
P+ ++VP + + L A FR R PV+ Y H +G A+ R SQP R A+DE
Sbjct: 190 PQKLLVPVWITDKELENVATFRSWKRIPVVVYRHLRNGAAIARCSQPEISWWGWRNADDE 249
Query: 821 ELLRAV 838
L+ ++
Sbjct: 250 YLVTSI 255
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 37,504,910
Number of extensions: 986937
Number of successful extensions: 4623
Number of sequences better than 1.0e-05: 15
Number of HSP's gapped: 4602
Number of HSP's successfully gapped: 15
Length of query: 331
Length of database: 18,874,504
Length adjustment: 103
Effective length of query: 228
Effective length of database: 15,440,896
Effective search space: 3520524288
Effective search space used: 3520524288
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003858
(994 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_056273.2| myotubularin-related protein 9 [Homo sapiens]. 262 4e-70
Alignment gi|NP_004676.3| myotubularin-related protein 6 [Homo sapiens]. 127 1e-29
Alignment gi|NP_003819.1| myotubularin-related protein 1 [Homo sapiens]. 125 6e-29
Alignment gi|NP_001230500.1| myotubularin-related protein 2 isoform 2 [Ho... 110 2e-24
Alignment gi|NP_958438.1| myotubularin-related protein 2 isoform 2 [Homo ... 110 2e-24
Alignment gi|NP_958435.1| myotubularin-related protein 2 isoform 2 [Homo ... 110 2e-24
Alignment gi|NP_057240.3| myotubularin-related protein 2 isoform 1 [Homo ... 110 2e-24
Alignment gi|NP_060147.2| myotubularin-related protein 8 [Homo sapiens]. 110 2e-24
Alignment gi|NP_004677.3| myotubularin-related protein 7 [Homo sapiens]. 109 3e-24
Alignment gi|NP_000243.1| myotubularin [Homo sapiens]. 95 1e-19
>ref|NP_056273.2| myotubularin-related protein 9 [Homo sapiens].
Length = 549
Score = 262 bits (669), Expect = 4e-70
Identities = 129/263 (49%), Positives = 178/263 (67%)
Frame = +2
Query: 164 MEFSELIRTGQAQAELLRGSEAPPLRGTLCVTGHHLLLSPGAQATPDLWLLLLRSVDSIE 343
MEF+ELI+T + +L P + GTLC+TGHHL+LS T +LWLL ++D+I+
Sbjct: 1 MEFAELIKTPRVDNVVLHRPFYPAVEGTLCLTGHHLILSSRQDNTEELWLLH-SNIDAID 59
Query: 344 KRVEGDSGTITLRCKDLRVLQLEIEGVEATLDIARSIEALSSLESVITSFPFFYRPKSLR 523
KR G GTI ++CKD R++QL+I G+E L+IA SIEALS+L+S+ +PFFYRP
Sbjct: 60 KRFVGSLGTIIIKCKDFRIIQLDIPGMEECLNIASSIEALSTLDSITLMYPFFYRPMFEV 119
Query: 524 LGDAWHFHPPESYYKRVARETNAWRLSEANEDFSLCPSYPRAVIVPRAVNNDALARSARF 703
+ D WH PE ++ + T+ WRLS N++F++CPSYP V VP++++++AL + A F
Sbjct: 120 IEDGWHSFLPEQEFELYSSATSEWRLSYVNKEFAVCPSYPPIVTVPKSIDDEALRKVATF 179
Query: 704 RQGGRFPVLSYYHAPSGTAVLRSSQPLTGPQKRRCAEDEELLRAVLAGARPGAQGFIVDT 883
R GGRFPVLSYYH +G ++RS QPLTG RRC EDE+L+ A L R G +G+I+DT
Sbjct: 180 RHGGRFPVLSYYHKKNGMVIMRSGQPLTGTNGRRCKEDEKLINATL---RAGKRGYIIDT 236
Query: 884 RLTQAAKQARMTGGGTESKAAYP 952
R A+Q R GGG E +A YP
Sbjct: 237 RSLNVAQQTRAKGGGFEQEAHYP 259
>ref|NP_004676.3| myotubularin-related protein 6 [Homo sapiens].
Length = 621
Score = 127 bits (320), Expect = 1e-29
Identities = 85/242 (35%), Positives = 119/242 (49%), Gaps = 4/242 (1%)
Frame = +2
Query: 236 LRGTLCVTGHHLLLSPGAQATPDLWLLLLRSVDSIEKRVEGDSGT-ITLRCKDLRVLQLE 412
L GTL +T HLL Q + W+L + S+EK SG + ++CK+ R +
Sbjct: 25 LTGTLYLTATHLLFIDSHQK--ETWILH-HHIASVEKLALTTSGCPLVIQCKNFRTVHFI 81
Query: 413 IEGVEATLDIARSIEALSSLESVITSFPFFYRPK---SLRLGDAWHFHPPESYYKRVARE 583
+ DI S+ LS + F Y PK S RL W YKR+
Sbjct: 82 VPRERDCHDIYNSLLQLSKQAKYEDLYAFSYNPKQNDSERL-QGWQLIDLAEEYKRMGVP 140
Query: 584 TNAWRLSEANEDFSLCPSYPRAVIVPRAVNNDALARSARFRQGGRFPVLSYYHAPSGTAV 763
+ W+LS+AN D+ +C +YPR + VPR + + S++FR GRFPVLSYYH A+
Sbjct: 141 NSHWQLSDANRDYKICETYPRELYVPRIASKPIIVGSSKFRSKGRFPVLSYYHQDKEAAI 200
Query: 764 LRSSQPLTGPQKRRCAEDEELLRAVLAGARPGAQGFIVDTRLTQAAKQARMTGGGTESKA 943
R SQPL+G RC EDE LL+A+ +++DTR A R G G E++
Sbjct: 201 CRCSQPLSG-FSARCLEDEHLLQAISKANPVNRYMYVMDTRPKLNAMANRAAGKGYENED 259
Query: 944 AY 949
Y
Sbjct: 260 NY 261
>ref|NP_003819.1| myotubularin-related protein 1 [Homo sapiens].
Length = 665
Score = 125 bits (314), Expect = 6e-29
Identities = 82/244 (33%), Positives = 124/244 (50%), Gaps = 7/244 (2%)
Frame = +2
Query: 242 GTLCVTGHHLLLSPGAQATP----DLWLLLLRSVDSIEKRVEGDSGT-ITLRCKDLRVLQ 406
GTL VT L + P D+ L ++ V+ I + GD+ I + CKD+R L+
Sbjct: 125 GTLTVTDFKLYFK-NVERDPHFILDVPLGVISRVEKIGAQSHGDNSCGIEIVCKDMRNLR 183
Query: 407 LEIEGVEAT-LDIARSIEALS-SLESVITSFPFFYRPKSLRLGDAWHFHPPESYYKRVAR 580
L + E + L I ++ + L + F F Y+ K G W + P S YKR
Sbjct: 184 LAYKQEEQSKLGIFENLNKHAFPLSNGQALFAFSYKEKFPING--WKVYDPVSEYKRQGL 241
Query: 581 ETNAWRLSEANEDFSLCPSYPRAVIVPRAVNNDALARSARFRQGGRFPVLSYYHAPSGTA 760
+W++S+ N ++ C +YP ++VP +V +D L++ A FR GR PVLS+ H S
Sbjct: 242 PNESWKISKINSNYEFCDTYPAIIVVPTSVKDDDLSKVAAFRAKGRVPVLSWIHPESQAT 301
Query: 761 VLRSSQPLTGPQKRRCAEDEELLRAVLAGARPGAQGFIVDTRLTQAAKQARMTGGGTESK 940
+ R SQPL GP +RC EDE+ L+ ++ + I D R A + GGG ES+
Sbjct: 302 ITRCSQPLVGPNDKRCKEDEKYLQTIMDANAQSHKLIIFDARQNSVADTNKTKGGGYESE 361
Query: 941 AAYP 952
+AYP
Sbjct: 362 SAYP 365
>ref|NP_001230500.1| myotubularin-related protein 2 isoform 2 [Homo sapiens].
Length = 571
Score = 110 bits (275), Expect = 2e-24
Identities = 78/247 (31%), Positives = 119/247 (48%), Gaps = 9/247 (3%)
Frame = +2
Query: 236 LRGTLCVTGHHLLLSPGAQATPDLWLLLLRSVDSIEK------RVEGDSGTITLRCKDLR 397
+RGTL VT + L + P + L ++ +EK R E G T+ CKD+R
Sbjct: 29 VRGTLTVTNYRLYFKSMERDPPFVLDASLGVINRVEKIGGASSRGENSYGLETV-CKDIR 87
Query: 398 VLQLEIEGVEATLDIARSI--EALSSLESVITSFPFF-YRPKSLRLGDAWHFHPPESYYK 568
L+ + T RSI + V + P F + K + + W + P Y+
Sbjct: 88 NLRFAHKPEGRT---RRSIFENLMKYAFPVSNNLPLFAFEYKEVFPENGWKLYDPLLEYR 144
Query: 569 RVARETNAWRLSEANEDFSLCPSYPRAVIVPRAVNNDALARSARFRQGGRFPVLSYYHAP 748
R +WR+++ NE + LC +YP ++VP + ++ L R A FR GR PVLS+ H
Sbjct: 145 RQGIPNESWRITKINERYELCDTYPALLVVPANIPDEELKRVASFRSRGRIPVLSWIHPE 204
Query: 749 SGTAVLRSSQPLTGPQKRRCAEDEELLRAVLAGARPGAQGFIVDTRLTQAAKQARMTGGG 928
S + R SQP+ G +R EDE+ L+A++ + FI D R + A + GGG
Sbjct: 205 SQATITRCSQPMVGVSGKRSKEDEKYLQAIMDSNAQSHKIFIFDARPSVNAVANKAKGGG 264
Query: 929 TESKAAY 949
ES+ AY
Sbjct: 265 YESEDAY 271
>ref|NP_958438.1| myotubularin-related protein 2 isoform 2 [Homo sapiens].
Length = 571
Score = 110 bits (275), Expect = 2e-24
Identities = 78/247 (31%), Positives = 119/247 (48%), Gaps = 9/247 (3%)
Frame = +2
Query: 236 LRGTLCVTGHHLLLSPGAQATPDLWLLLLRSVDSIEK------RVEGDSGTITLRCKDLR 397
+RGTL VT + L + P + L ++ +EK R E G T+ CKD+R
Sbjct: 29 VRGTLTVTNYRLYFKSMERDPPFVLDASLGVINRVEKIGGASSRGENSYGLETV-CKDIR 87
Query: 398 VLQLEIEGVEATLDIARSI--EALSSLESVITSFPFF-YRPKSLRLGDAWHFHPPESYYK 568
L+ + T RSI + V + P F + K + + W + P Y+
Sbjct: 88 NLRFAHKPEGRT---RRSIFENLMKYAFPVSNNLPLFAFEYKEVFPENGWKLYDPLLEYR 144
Query: 569 RVARETNAWRLSEANEDFSLCPSYPRAVIVPRAVNNDALARSARFRQGGRFPVLSYYHAP 748
R +WR+++ NE + LC +YP ++VP + ++ L R A FR GR PVLS+ H
Sbjct: 145 RQGIPNESWRITKINERYELCDTYPALLVVPANIPDEELKRVASFRSRGRIPVLSWIHPE 204
Query: 749 SGTAVLRSSQPLTGPQKRRCAEDEELLRAVLAGARPGAQGFIVDTRLTQAAKQARMTGGG 928
S + R SQP+ G +R EDE+ L+A++ + FI D R + A + GGG
Sbjct: 205 SQATITRCSQPMVGVSGKRSKEDEKYLQAIMDSNAQSHKIFIFDARPSVNAVANKAKGGG 264
Query: 929 TESKAAY 949
ES+ AY
Sbjct: 265 YESEDAY 271
>ref|NP_958435.1| myotubularin-related protein 2 isoform 2 [Homo sapiens].
Length = 571
Score = 110 bits (275), Expect = 2e-24
Identities = 78/247 (31%), Positives = 119/247 (48%), Gaps = 9/247 (3%)
Frame = +2
Query: 236 LRGTLCVTGHHLLLSPGAQATPDLWLLLLRSVDSIEK------RVEGDSGTITLRCKDLR 397
+RGTL VT + L + P + L ++ +EK R E G T+ CKD+R
Sbjct: 29 VRGTLTVTNYRLYFKSMERDPPFVLDASLGVINRVEKIGGASSRGENSYGLETV-CKDIR 87
Query: 398 VLQLEIEGVEATLDIARSI--EALSSLESVITSFPFF-YRPKSLRLGDAWHFHPPESYYK 568
L+ + T RSI + V + P F + K + + W + P Y+
Sbjct: 88 NLRFAHKPEGRT---RRSIFENLMKYAFPVSNNLPLFAFEYKEVFPENGWKLYDPLLEYR 144
Query: 569 RVARETNAWRLSEANEDFSLCPSYPRAVIVPRAVNNDALARSARFRQGGRFPVLSYYHAP 748
R +WR+++ NE + LC +YP ++VP + ++ L R A FR GR PVLS+ H
Sbjct: 145 RQGIPNESWRITKINERYELCDTYPALLVVPANIPDEELKRVASFRSRGRIPVLSWIHPE 204
Query: 749 SGTAVLRSSQPLTGPQKRRCAEDEELLRAVLAGARPGAQGFIVDTRLTQAAKQARMTGGG 928
S + R SQP+ G +R EDE+ L+A++ + FI D R + A + GGG
Sbjct: 205 SQATITRCSQPMVGVSGKRSKEDEKYLQAIMDSNAQSHKIFIFDARPSVNAVANKAKGGG 264
Query: 929 TESKAAY 949
ES+ AY
Sbjct: 265 YESEDAY 271
>ref|NP_057240.3| myotubularin-related protein 2 isoform 1 [Homo sapiens].
Length = 643
Score = 110 bits (275), Expect = 2e-24
Identities = 78/247 (31%), Positives = 119/247 (48%), Gaps = 9/247 (3%)
Frame = +2
Query: 236 LRGTLCVTGHHLLLSPGAQATPDLWLLLLRSVDSIEK------RVEGDSGTITLRCKDLR 397
+RGTL VT + L + P + L ++ +EK R E G T+ CKD+R
Sbjct: 101 VRGTLTVTNYRLYFKSMERDPPFVLDASLGVINRVEKIGGASSRGENSYGLETV-CKDIR 159
Query: 398 VLQLEIEGVEATLDIARSI--EALSSLESVITSFPFF-YRPKSLRLGDAWHFHPPESYYK 568
L+ + T RSI + V + P F + K + + W + P Y+
Sbjct: 160 NLRFAHKPEGRT---RRSIFENLMKYAFPVSNNLPLFAFEYKEVFPENGWKLYDPLLEYR 216
Query: 569 RVARETNAWRLSEANEDFSLCPSYPRAVIVPRAVNNDALARSARFRQGGRFPVLSYYHAP 748
R +WR+++ NE + LC +YP ++VP + ++ L R A FR GR PVLS+ H
Sbjct: 217 RQGIPNESWRITKINERYELCDTYPALLVVPANIPDEELKRVASFRSRGRIPVLSWIHPE 276
Query: 749 SGTAVLRSSQPLTGPQKRRCAEDEELLRAVLAGARPGAQGFIVDTRLTQAAKQARMTGGG 928
S + R SQP+ G +R EDE+ L+A++ + FI D R + A + GGG
Sbjct: 277 SQATITRCSQPMVGVSGKRSKEDEKYLQAIMDSNAQSHKIFIFDARPSVNAVANKAKGGG 336
Query: 929 TESKAAY 949
ES+ AY
Sbjct: 337 YESEDAY 343
>ref|NP_060147.2| myotubularin-related protein 8 [Homo sapiens].
Length = 704
Score = 110 bits (275), Expect = 2e-24
Identities = 75/243 (30%), Positives = 119/243 (48%), Gaps = 4/243 (1%)
Frame = +2
Query: 233 PLRGTLCVTGHHLLLSPGAQATPDLWLLLLRSVDSIEKRVEGDSGT-ITLRCKDLRVLQL 409
P G L +T HL+ + A + L + ++EK G +TLRCK+ RV
Sbjct: 23 PANGILYLTATHLIYVEASGAARKETWIALHHIATVEKLPITSLGCPLTLRCKNFRVAHF 82
Query: 410 EIEGVEATLDIARSIEALSSLESVITSFPFFYRPKSLR--LGDAWHFHPPESYYKRVARE 583
++ ++ S+ LS + F Y PKS + W P S + R+
Sbjct: 83 VLDSDLVCHEVYISLLKLSQPALPEDLYAFSYNPKSSKEMRESGWKLIDPISDFGRMGIP 142
Query: 584 TNAWRLSEANEDFSLCPSYPRAVIVPRAVNNDALARSARFRQGGRFPVLSYYHAPSGTAV 763
W +++AN ++ +C +YP ++VP++V + S++FR R PVLSY + + A+
Sbjct: 143 NRNWTITDANRNYEICSTYPPEIVVPKSVTLGTVVGSSKFRSKERVPVLSYLYKENNAAI 202
Query: 764 LRSSQPLTGPQKRRCAEDEELLRAVLAGARPGAQ-GFIVDTRLTQAAKQARMTGGGTESK 940
R SQPL+G RC +DE LL A+ + PG+Q ++VDTR A R G G E++
Sbjct: 203 CRCSQPLSG-FYTRCVDDELLLEAI-SQTNPGSQFMYVVDTRPKLNAMANRAAGKGYENE 260
Query: 941 AAY 949
Y
Sbjct: 261 DNY 263
>ref|NP_004677.3| myotubularin-related protein 7 [Homo sapiens].
Length = 660
Score = 109 bits (273), Expect = 3e-24
Identities = 80/264 (30%), Positives = 128/264 (48%), Gaps = 6/264 (2%)
Frame = +2
Query: 176 ELIRTGQAQAELL--RGSEAPPLRGTLCVTGHHLLLSPGAQATPDLWLLLLRSVDSIEKR 349
E IRT + + L R S GTL +T H++ + +L + +IEK+
Sbjct: 2 EHIRTPKVENVRLVDRVSPKKAALGTLYLTATHVIFVENSPDPRKETWILHSQISTIEKQ 61
Query: 350 VEGDSGT-ITLRCKDLRVLQLEIEGVEATLDIARSIEALSSLESVITSFPFFYRPK--SL 520
+G + +RCK+ +++QL I D+ S+ L+ + F + P
Sbjct: 62 ATTATGCPLLIRCKNFQIIQLIIPQERDCHDVYISLIRLARPVKYEELYCFSFNPMLDKE 121
Query: 521 RLGDAWHFHPPESYYKRVARETNAWRLSEANEDFSLCPSYPRAVIVPRAVNNDALARSAR 700
W Y R+ + W+LS+ N D+ +C SYP + VP++ + S++
Sbjct: 122 EREQGWVLIDLSEEYTRMGLPNHYWQLSDVNRDYRVCDSYPTELYVPKSATAHIIVGSSK 181
Query: 701 FRQGGRFPVLSYYHAPSGTAVLRSSQPLTGPQKRRCAEDEELLRAVLAGARPGAQ-GFIV 877
FR RFPVLSYY+ + ++ RSSQPL+G RC EDE++L+A+ A PG+ ++V
Sbjct: 182 FRSRRRFPVLSYYYKDNHASICRSSQPLSG-FSARCLEDEQMLQAI-RKANPGSDFVYVV 239
Query: 878 DTRLTQAAKQARMTGGGTESKAAY 949
DTR A R G G E++ Y
Sbjct: 240 DTRPKLNAMANRAAGKGYENEDNY 263
>ref|NP_000243.1| myotubularin [Homo sapiens].
Length = 603
Score = 94.7 bits (234), Expect = 1e-19
Identities = 73/248 (29%), Positives = 118/248 (47%), Gaps = 9/248 (3%)
Frame = +2
Query: 233 PLRGTLCVTGHHLLLSPGAQATPDLWLLLLRSVDSIEK------RVEGDSGTITLRCKDL 394
P++G + +T + L L + + + L + IEK R E G + + CKD+
Sbjct: 58 PIKGRVYITNYRLYLRSLETDSSLILDVPLGVISRIEKMGGATSRGENSYG-LDITCKDM 116
Query: 395 RVLQ--LEIEGVEATLDIARSIEALSSLESVITSFPFFYRPKSLRLG-DAWHFHPPESYY 565
R L+ L+ EG + D+ + + + S P F + D W + P Y
Sbjct: 117 RNLRFALKQEG-HSRRDMFEILTRYAF--PLAHSLPLFAFLNEEKFNVDGWTVYNPVEEY 173
Query: 566 KRVARETNAWRLSEANEDFSLCPSYPRAVIVPRAVNNDALARSARFRQGGRFPVLSYYHA 745
+R + WR++ N+ + LC +YP ++VP ++D L R A FR R PVLS+ H
Sbjct: 174 RRQGLPNHHWRITFINKCYELCDTYPALLVVPYRASDDDLRRVATFRSRNRIPVLSWIHP 233
Query: 746 PSGTAVLRSSQPLTGPQKRRCAEDEELLRAVLAGARPGAQGFIVDTRLTQAAKQARMTGG 925
+ T ++R SQPL G +R +DE+ L + + ++ I D R + A + TGG
Sbjct: 234 ENKTVIVRCSQPLVGMSGKRNKDDEKYLDVIRETNKQISKLTIYDARPSVNAVANKATGG 293
Query: 926 GTESKAAY 949
G ES AY
Sbjct: 294 GYESDDAY 301
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 36,497,879
Number of extensions: 952918
Number of successful extensions: 4173
Number of sequences better than 1.0e-05: 15
Number of HSP's gapped: 4149
Number of HSP's successfully gapped: 15
Length of query: 331
Length of database: 18,297,164
Length adjustment: 103
Effective length of query: 228
Effective length of database: 14,901,872
Effective search space: 3397626816
Effective search space used: 3397626816
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003858
(994 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_808262.1| myotubularin-related protein 9 [Mus musculus]. 265 4e-71
Alignment gi|NP_058681.1| myotubularin-related protein 1 [Mus musculus]. 121 7e-28
Alignment gi|NP_001035789.1| myotubularin-related protein 7 [Mus musculus]. 117 1e-26
Alignment gi|NP_659092.1| myotubularin-related protein 6 [Mus musculus]. 117 2e-26
Alignment gi|NP_076347.3| myotubularin-related protein 2 [Mus musculus]. 110 2e-24
Alignment gi|NP_001157664.1| myotubularin isoform 2 [Mus musculus]. 97 2e-20
Alignment gi|NP_064310.2| myotubularin isoform 1 [Mus musculus]. 97 2e-20
Alignment gi|NP_001157663.1| myotubularin isoform 1 [Mus musculus]. 97 2e-20
Alignment gi|NP_001157662.1| myotubularin isoform 1 [Mus musculus]. 97 2e-20
Alignment gi|NP_573478.1| myotubularin-related protein 4 [Mus musculus]. 74 2e-13
>ref|NP_808262.1| myotubularin-related protein 9 [Mus musculus].
Length = 545
Score = 265 bits (677), Expect = 4e-71
Identities = 133/263 (50%), Positives = 179/263 (68%)
Frame = +2
Query: 164 MEFSELIRTGQAQAELLRGSEAPPLRGTLCVTGHHLLLSPGAQATPDLWLLLLRSVDSIE 343
MEF+ELI+T + +L + GTLC+TGHHL+LS T +LWLL ++D+I+
Sbjct: 1 MEFAELIKTPRVDNVVLHRPFYTAVEGTLCLTGHHLILSSRQDNTEELWLLH-SNIDAID 59
Query: 344 KRVEGDSGTITLRCKDLRVLQLEIEGVEATLDIARSIEALSSLESVITSFPFFYRPKSLR 523
KR G GTI ++CKD R++QL+I G+E L+IA SIEALS+L+SV +PFFYRP
Sbjct: 60 KRFVGSLGTIIIKCKDFRIIQLDIPGMEECLNIASSIEALSTLDSVTLMYPFFYRPMFEV 119
Query: 524 LGDAWHFHPPESYYKRVARETNAWRLSEANEDFSLCPSYPRAVIVPRAVNNDALARSARF 703
+ D WH PE ++ + T+ WRLS N+DFS+CPSYP VIVP++V+++AL + A F
Sbjct: 120 IEDGWHSFLPEQEFEFYSSATSEWRLSYINKDFSICPSYPPTVIVPKSVDDEALRKVAAF 179
Query: 704 RQGGRFPVLSYYHAPSGTAVLRSSQPLTGPQKRRCAEDEELLRAVLAGARPGAQGFIVDT 883
R GGRFPVLSYYH +G ++RS QPLTG RRC EDE+L+ A L R G +G+++DT
Sbjct: 180 RHGGRFPVLSYYHKKNGMVIMRSGQPLTGTNGRRCKEDEKLINATL---RAGKRGYLIDT 236
Query: 884 RLTQAAKQARMTGGGTESKAAYP 952
R A+QAR GGG E +A YP
Sbjct: 237 RSLNVAQQARAKGGGFEQEAHYP 259
>ref|NP_058681.1| myotubularin-related protein 1 [Mus musculus].
Length = 669
Score = 121 bits (304), Expect = 7e-28
Identities = 80/244 (32%), Positives = 123/244 (50%), Gaps = 7/244 (2%)
Frame = +2
Query: 242 GTLCVTGHHLLLSPGAQATP----DLWLLLLRSVDSIEKRVEGDSGT-ITLRCKDLRVLQ 406
GTL VT + + P D+ L ++ V+ I + GD+ I + CKD+R L+
Sbjct: 129 GTLTVTDFKMYFK-NVERDPHFVLDVPLGVISRVEKIGAQSHGDNSCGIEIVCKDMRNLR 187
Query: 407 LEIEGVEAT-LDIARSIEALS-SLESVITSFPFFYRPKSLRLGDAWHFHPPESYYKRVAR 580
L + E L I ++ + L + F F Y+ K G W + P S YKR
Sbjct: 188 LAYKQEEQRKLGIFENLNKHAFPLSNGQVLFAFNYKEKFPVNG--WKVYDPVSEYKRQGL 245
Query: 581 ETNAWRLSEANEDFSLCPSYPRAVIVPRAVNNDALARSARFRQGGRFPVLSYYHAPSGTA 760
+W++S+ N ++ C +YP ++VP +V +D L++ A FR GR PVLS+ H S
Sbjct: 246 PNESWKISKINSNYEFCDTYPAIIVVPTSVKDDDLSKVAAFRAKGRVPVLSWIHPESQAT 305
Query: 761 VLRSSQPLTGPQKRRCAEDEELLRAVLAGARPGAQGFIVDTRLTQAAKQARMTGGGTESK 940
+ R SQPL GP +RC EDE+ L+ ++ + I D R A + GGG E++
Sbjct: 306 ITRCSQPLVGPNDKRCKEDEKYLQTIMDANAQSHKLTIFDARQNSVADTNKAKGGGYENE 365
Query: 941 AAYP 952
+AYP
Sbjct: 366 SAYP 369
>ref|NP_001035789.1| myotubularin-related protein 7 [Mus musculus].
Length = 660
Score = 117 bits (294), Expect = 1e-26
Identities = 79/240 (32%), Positives = 120/240 (50%), Gaps = 4/240 (1%)
Frame = +2
Query: 242 GTLCVTGHHLLLSPGAQATPDLWLLLLRSVDSIEKRVEGDSGT-ITLRCKDLRVLQLEIE 418
GTL +T H++ A T +L + +IEK+ +G + +RCK+ +++QL I
Sbjct: 26 GTLYLTATHVIFVENAPDTRKETWILHSQISTIEKQATTATGCPLLIRCKNFQIVQLVIP 85
Query: 419 GVEATLDIARSIEALSSLESVITSFPFFYRPK--SLRLGDAWHFHPPESYYKRVARETNA 592
D+ S+ L+ + F + PK W YKR+ N
Sbjct: 86 QERDCHDVYISLIRLARPVKYEELYCFSFNPKLDKEEREQGWLLVDLSEEYKRMGLPDNY 145
Query: 593 WRLSEANEDFSLCPSYPRAVIVPRAVNNDALARSARFRQGGRFPVLSYYHAPSGTAVLRS 772
W+LS+ N D+ +C SYP + VPR+ + S++FR RFP LSYY S ++ RS
Sbjct: 146 WQLSDVNRDYRVCDSYPTELYVPRSATAHIIVGSSKFRSRRRFPALSYYCKDSHASICRS 205
Query: 773 SQPLTGPQKRRCAEDEELLRAVLAGARPGAQG-FIVDTRLTQAAKQARMTGGGTESKAAY 949
SQPL+G RC EDE++L+A+ A PG+ ++VDTR A R G G E++ Y
Sbjct: 206 SQPLSG-FSARCLEDEQMLQAI-RKANPGSDFIYVVDTRPKLNAMANRAAGKGYENEDNY 263
>ref|NP_659092.1| myotubularin-related protein 6 [Mus musculus].
Length = 617
Score = 117 bits (292), Expect = 2e-26
Identities = 81/242 (33%), Positives = 120/242 (49%), Gaps = 4/242 (1%)
Frame = +2
Query: 236 LRGTLCVTGHHLLLSPGAQATPDLWLLLLRSVDSIEKRVEGDSGT-ITLRCKDLRVLQLE 412
L GTL +T HLL Q + W+L + S+EK SG + ++CK+ R++
Sbjct: 25 LTGTLYLTATHLLFIDAQQK--ETWILH-HHIASVEKLALTTSGCPLVIQCKNFRIVHFI 81
Query: 413 IEGVEATLDIARSIEALSSLESVITSFPFFYRPKS--LRLGDAWHFHPPESYYKRVARET 586
+ DI S+ LS + F Y PK + W + Y+R+
Sbjct: 82 VPRERDCHDIYNSLLQLSKQAKYEDLYAFSYNPKQNDTERRNGWQLIDLAAEYERMGVPN 141
Query: 587 NAWRLSEANEDFSLCPSYPRAVIVPRAVNNDALARSARFRQGGRFPVLSYYHAPSGTAVL 766
W+LS+AN ++ +C +YPR + VPR + + S+ FR GR PVLSY + A+
Sbjct: 142 ANWQLSDANREYKVCETYPRELYVPRTASRPVIVGSSNFRSKGRLPVLSYCRQGTEAAIC 201
Query: 767 RSSQPLTGPQKRRCAEDEELLRAVLAGARPGAQ-GFIVDTRLTQAAKQARMTGGGTESKA 943
R SQPL+G RC EDE LL+A+ + A PG + ++VDTR A R G G E++
Sbjct: 202 RCSQPLSG-FSARCLEDEHLLQAI-SKANPGNRYMYVVDTRPKLNAIANRAAGKGYENED 259
Query: 944 AY 949
Y
Sbjct: 260 NY 261
>ref|NP_076347.3| myotubularin-related protein 2 [Mus musculus].
Length = 643
Score = 110 bits (275), Expect = 2e-24
Identities = 77/246 (31%), Positives = 118/246 (47%), Gaps = 8/246 (3%)
Frame = +2
Query: 236 LRGTLCVTGHHLLLSPGAQATPDLWLLLLRSVDSIEK------RVEGDSGTITLRCKDLR 397
+RGTL VT + L + P + L + +EK R E G T+ CKD+R
Sbjct: 101 VRGTLTVTSYRLYFKSMERDPPFVLDASLGVISRVEKIGGASSRGENSYGLETV-CKDIR 159
Query: 398 VLQL--EIEGVEATLDIARSIEALSSLESVITSFPFFYRPKSLRLGDAWHFHPPESYYKR 571
L+ + EG ++ + + + F F Y K + + W + P Y+R
Sbjct: 160 NLRFAHKPEGRTRRSIFENLMKYAFPVSNGLPLFAFEY--KEVFPENGWKLYDPLLEYRR 217
Query: 572 VARETNAWRLSEANEDFSLCPSYPRAVIVPRAVNNDALARSARFRQGGRFPVLSYYHAPS 751
+WR+++ NE + LC +YP ++VP + ++ L R A FR GR PVLS+ H S
Sbjct: 218 QGIPNESWRITKINERYELCDTYPALLVVPANIPDEELKRVASFRSRGRIPVLSWIHPES 277
Query: 752 GTAVLRSSQPLTGPQKRRCAEDEELLRAVLAGARPGAQGFIVDTRLTQAAKQARMTGGGT 931
V R SQP+ G +R EDE+ L+A++ + FI D R + A + GGG
Sbjct: 278 QATVTRCSQPMVGVSGKRSKEDEKYLQAIMDSNAQSHKIFIFDARPSVNAVANKAKGGGY 337
Query: 932 ESKAAY 949
ES+ AY
Sbjct: 338 ESEDAY 343
>ref|NP_001157664.1| myotubularin isoform 2 [Mus musculus].
Length = 572
Score = 97.1 bits (240), Expect = 2e-20
Identities = 74/247 (29%), Positives = 114/247 (46%), Gaps = 8/247 (3%)
Frame = +2
Query: 233 PLRGTLCVTGHHLLLSPGAQATPDLWLLLLRSVDSIEK------RVEGDSGTITLRCKDL 394
P++G + +T + L L + + + L + IEK R E G + + CKDL
Sbjct: 58 PIKGRVYITNYRLYLRSLETDSALILDVPLGVISRIEKMGGATSRGENSYG-LDITCKDL 116
Query: 395 RVLQ--LEIEGVEATLDIARSIEALSSLESVITSFPFFYRPKSLRLGDAWHFHPPESYYK 568
R L+ L+ EG ++ L + F F K D W + P Y+
Sbjct: 117 RNLRFALKQEGHSRRDMFEILVKHAFPLAHNLPLFAFVNEEKFNV--DGWTVYNPVEEYR 174
Query: 569 RVARETNAWRLSEANEDFSLCPSYPRAVIVPRAVNNDALARSARFRQGGRFPVLSYYHAP 748
R + WR+S N+ + LC +YP ++VP ++D L R A FR R PVLS+ H
Sbjct: 175 RQGLPNHHWRISFINKCYELCETYPALLVVPYRTSDDDLRRIATFRSRNRLPVLSWIHPE 234
Query: 749 SGTAVLRSSQPLTGPQKRRCAEDEELLRAVLAGARPGAQGFIVDTRLTQAAKQARMTGGG 928
+ ++R SQPL G +R +DE+ L + + ++ I D R + A + TGGG
Sbjct: 235 NKMVIMRCSQPLVGMSGKRNKDDEKYLDVIRETNKQTSKLMIYDARPSVNAVANKATGGG 294
Query: 929 TESKAAY 949
ES AY
Sbjct: 295 YESDDAY 301
>ref|NP_064310.2| myotubularin isoform 1 [Mus musculus].
Length = 603
Score = 97.1 bits (240), Expect = 2e-20
Identities = 74/247 (29%), Positives = 114/247 (46%), Gaps = 8/247 (3%)
Frame = +2
Query: 233 PLRGTLCVTGHHLLLSPGAQATPDLWLLLLRSVDSIEK------RVEGDSGTITLRCKDL 394
P++G + +T + L L + + + L + IEK R E G + + CKDL
Sbjct: 58 PIKGRVYITNYRLYLRSLETDSALILDVPLGVISRIEKMGGATSRGENSYG-LDITCKDL 116
Query: 395 RVLQ--LEIEGVEATLDIARSIEALSSLESVITSFPFFYRPKSLRLGDAWHFHPPESYYK 568
R L+ L+ EG ++ L + F F K D W + P Y+
Sbjct: 117 RNLRFALKQEGHSRRDMFEILVKHAFPLAHNLPLFAFVNEEKFNV--DGWTVYNPVEEYR 174
Query: 569 RVARETNAWRLSEANEDFSLCPSYPRAVIVPRAVNNDALARSARFRQGGRFPVLSYYHAP 748
R + WR+S N+ + LC +YP ++VP ++D L R A FR R PVLS+ H
Sbjct: 175 RQGLPNHHWRISFINKCYELCETYPALLVVPYRTSDDDLRRIATFRSRNRLPVLSWIHPE 234
Query: 749 SGTAVLRSSQPLTGPQKRRCAEDEELLRAVLAGARPGAQGFIVDTRLTQAAKQARMTGGG 928
+ ++R SQPL G +R +DE+ L + + ++ I D R + A + TGGG
Sbjct: 235 NKMVIMRCSQPLVGMSGKRNKDDEKYLDVIRETNKQTSKLMIYDARPSVNAVANKATGGG 294
Query: 929 TESKAAY 949
ES AY
Sbjct: 295 YESDDAY 301
>ref|NP_001157663.1| myotubularin isoform 1 [Mus musculus].
Length = 603
Score = 97.1 bits (240), Expect = 2e-20
Identities = 74/247 (29%), Positives = 114/247 (46%), Gaps = 8/247 (3%)
Frame = +2
Query: 233 PLRGTLCVTGHHLLLSPGAQATPDLWLLLLRSVDSIEK------RVEGDSGTITLRCKDL 394
P++G + +T + L L + + + L + IEK R E G + + CKDL
Sbjct: 58 PIKGRVYITNYRLYLRSLETDSALILDVPLGVISRIEKMGGATSRGENSYG-LDITCKDL 116
Query: 395 RVLQ--LEIEGVEATLDIARSIEALSSLESVITSFPFFYRPKSLRLGDAWHFHPPESYYK 568
R L+ L+ EG ++ L + F F K D W + P Y+
Sbjct: 117 RNLRFALKQEGHSRRDMFEILVKHAFPLAHNLPLFAFVNEEKFNV--DGWTVYNPVEEYR 174
Query: 569 RVARETNAWRLSEANEDFSLCPSYPRAVIVPRAVNNDALARSARFRQGGRFPVLSYYHAP 748
R + WR+S N+ + LC +YP ++VP ++D L R A FR R PVLS+ H
Sbjct: 175 RQGLPNHHWRISFINKCYELCETYPALLVVPYRTSDDDLRRIATFRSRNRLPVLSWIHPE 234
Query: 749 SGTAVLRSSQPLTGPQKRRCAEDEELLRAVLAGARPGAQGFIVDTRLTQAAKQARMTGGG 928
+ ++R SQPL G +R +DE+ L + + ++ I D R + A + TGGG
Sbjct: 235 NKMVIMRCSQPLVGMSGKRNKDDEKYLDVIRETNKQTSKLMIYDARPSVNAVANKATGGG 294
Query: 929 TESKAAY 949
ES AY
Sbjct: 295 YESDDAY 301
>ref|NP_001157662.1| myotubularin isoform 1 [Mus musculus].
Length = 603
Score = 97.1 bits (240), Expect = 2e-20
Identities = 74/247 (29%), Positives = 114/247 (46%), Gaps = 8/247 (3%)
Frame = +2
Query: 233 PLRGTLCVTGHHLLLSPGAQATPDLWLLLLRSVDSIEK------RVEGDSGTITLRCKDL 394
P++G + +T + L L + + + L + IEK R E G + + CKDL
Sbjct: 58 PIKGRVYITNYRLYLRSLETDSALILDVPLGVISRIEKMGGATSRGENSYG-LDITCKDL 116
Query: 395 RVLQ--LEIEGVEATLDIARSIEALSSLESVITSFPFFYRPKSLRLGDAWHFHPPESYYK 568
R L+ L+ EG ++ L + F F K D W + P Y+
Sbjct: 117 RNLRFALKQEGHSRRDMFEILVKHAFPLAHNLPLFAFVNEEKFNV--DGWTVYNPVEEYR 174
Query: 569 RVARETNAWRLSEANEDFSLCPSYPRAVIVPRAVNNDALARSARFRQGGRFPVLSYYHAP 748
R + WR+S N+ + LC +YP ++VP ++D L R A FR R PVLS+ H
Sbjct: 175 RQGLPNHHWRISFINKCYELCETYPALLVVPYRTSDDDLRRIATFRSRNRLPVLSWIHPE 234
Query: 749 SGTAVLRSSQPLTGPQKRRCAEDEELLRAVLAGARPGAQGFIVDTRLTQAAKQARMTGGG 928
+ ++R SQPL G +R +DE+ L + + ++ I D R + A + TGGG
Sbjct: 235 NKMVIMRCSQPLVGMSGKRNKDDEKYLDVIRETNKQTSKLMIYDARPSVNAVANKATGGG 294
Query: 929 TESKAAY 949
ES AY
Sbjct: 295 YESDDAY 301
>ref|NP_573478.1| myotubularin-related protein 4 [Mus musculus].
Length = 1190
Score = 73.9 bits (180), Expect = 2e-13
Identities = 57/186 (30%), Positives = 85/186 (45%), Gaps = 13/186 (6%)
Frame = +2
Query: 320 LRSVDSIEKRVEGDSGTITLRCKDLRVLQLEIEGVEATLD-IARSIEALSSLESVITSFP 496
LR +DS+E R D + + CKD +V++ + + ++R A + F
Sbjct: 73 LRMIDSVESR---DMFQLHIACKDSKVVRCHFSTFKQCQEWLSRLSRATARPAKPEDLFA 129
Query: 497 FFYRPKSLRLGDA-WHFH---PPESYYKRVARET--------NAWRLSEANEDFSLCPSY 640
F Y L L + H H P E R E N WR+S N ++ LCPSY
Sbjct: 130 FAYHAWCLGLTEEDQHTHLCQPGEHIRCRQEAELARMGFDLQNVWRVSHINSNYKLCPSY 189
Query: 641 PRAVIVPRAVNNDALARSARFRQGGRFPVLSYYHAPSGTAVLRSSQPLTGPQKRRCAEDE 820
P+ ++VP + + L A FR R PV+ Y H +G A+ R SQP R A+DE
Sbjct: 190 PQKLLVPVWITDKELENVASFRSWKRIPVVVYRHLRNGAAIARCSQPEISWWGWRNADDE 249
Query: 821 ELLRAV 838
L+ ++
Sbjct: 250 YLVTSI 255
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 30,533,094
Number of extensions: 777868
Number of successful extensions: 3512
Number of sequences better than 1.0e-05: 12
Number of HSP's gapped: 3485
Number of HSP's successfully gapped: 13
Length of query: 331
Length of database: 15,617,559
Length adjustment: 102
Effective length of query: 229
Effective length of database: 12,553,887
Effective search space: 2874840123
Effective search space used: 2874840123
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003858
(994 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_003356352.1| PREDICTED: myotubularin-related protein 9-li... 443 e-125
Alignment gi|XP_003360815.1| PREDICTED: myotubularin-related protein 9 [S... 264 7e-71
Alignment gi|XP_003135513.1| PREDICTED: myotubularin-related protein 1 [S... 130 9e-31
Alignment gi|XP_003359911.1| PREDICTED: myotubularin-related protein 7-li... 112 2e-25
Alignment gi|XP_003357300.1| PREDICTED: myotubularin-related protein 2 is... 107 1e-23
Alignment gi|XP_003129845.1| PREDICTED: myotubularin-related protein 2 is... 107 1e-23
Alignment gi|XP_003135196.2| PREDICTED: myotubularin-related protein 8-li... 105 3e-23
Alignment gi|XP_003135195.2| PREDICTED: myotubularin-related protein 8-li... 105 3e-23
Alignment gi|XP_003134245.2| PREDICTED: myotubularin-related protein 7 [S... 96 3e-20
Alignment gi|XP_003135511.2| PREDICTED: myotubularin [Sus scrofa]. 92 3e-19
>ref|XP_003356352.1| PREDICTED: myotubularin-related protein 9-like [Sus scrofa].
Length = 231
Score = 443 bits (1140), Expect = e-125
Identities = 221/221 (100%), Positives = 221/221 (100%)
Frame = +2
Query: 164 MEFSELIRTGQAQAELLRGSEAPPLRGTLCVTGHHLLLSPGAQATPDLWLLLLRSVDSIE 343
MEFSELIRTGQAQAELLRGSEAPPLRGTLCVTGHHLLLSPGAQATPDLWLLLLRSVDSIE
Sbjct: 1 MEFSELIRTGQAQAELLRGSEAPPLRGTLCVTGHHLLLSPGAQATPDLWLLLLRSVDSIE 60
Query: 344 KRVEGDSGTITLRCKDLRVLQLEIEGVEATLDIARSIEALSSLESVITSFPFFYRPKSLR 523
KRVEGDSGTITLRCKDLRVLQLEIEGVEATLDIARSIEALSSLESVITSFPFFYRPKSLR
Sbjct: 61 KRVEGDSGTITLRCKDLRVLQLEIEGVEATLDIARSIEALSSLESVITSFPFFYRPKSLR 120
Query: 524 LGDAWHFHPPESYYKRVARETNAWRLSEANEDFSLCPSYPRAVIVPRAVNNDALARSARF 703
LGDAWHFHPPESYYKRVARETNAWRLSEANEDFSLCPSYPRAVIVPRAVNNDALARSARF
Sbjct: 121 LGDAWHFHPPESYYKRVARETNAWRLSEANEDFSLCPSYPRAVIVPRAVNNDALARSARF 180
Query: 704 RQGGRFPVLSYYHAPSGTAVLRSSQPLTGPQKRRCAEDEEL 826
RQGGRFPVLSYYHAPSGTAVLRSSQPLTGPQKRRCAEDEEL
Sbjct: 181 RQGGRFPVLSYYHAPSGTAVLRSSQPLTGPQKRRCAEDEEL 221
>ref|XP_003360815.1| PREDICTED: myotubularin-related protein 9 [Sus scrofa].
Length = 549
Score = 264 bits (674), Expect = 7e-71
Identities = 131/263 (49%), Positives = 179/263 (68%)
Frame = +2
Query: 164 MEFSELIRTGQAQAELLRGSEAPPLRGTLCVTGHHLLLSPGAQATPDLWLLLLRSVDSIE 343
MEF+ELI+T + +L P + GTLC+TGHHL+LS T +LWLL ++D+I+
Sbjct: 1 MEFAELIKTPRVDNVVLHRPFYPAVEGTLCLTGHHLILSSRQDNTEELWLLH-SNIDAID 59
Query: 344 KRVEGDSGTITLRCKDLRVLQLEIEGVEATLDIARSIEALSSLESVITSFPFFYRPKSLR 523
R G GTI ++CKD R++QL+I G+E L+IA SIEALS+L+S+ +PFFYRP
Sbjct: 60 NRFVGPLGTIIIKCKDFRIIQLDIPGMEECLNIASSIEALSTLDSITLMYPFFYRPMFEV 119
Query: 524 LGDAWHFHPPESYYKRVARETNAWRLSEANEDFSLCPSYPRAVIVPRAVNNDALARSARF 703
+ D WH PE ++ + T+ WRLS N++F++CPSYP VIVP+A++++AL + A F
Sbjct: 120 IEDGWHSFLPEQEFELYSSATSEWRLSYVNKEFAVCPSYPPIVIVPKAIDDEALRKVAMF 179
Query: 704 RQGGRFPVLSYYHAPSGTAVLRSSQPLTGPQKRRCAEDEELLRAVLAGARPGAQGFIVDT 883
R GGRFPVLSYYH +G ++RS QPLTG RRC EDE+L+ A L R G +G+I+DT
Sbjct: 180 RHGGRFPVLSYYHKKNGMVIMRSGQPLTGTNGRRCKEDEKLINATL---RAGKRGYIIDT 236
Query: 884 RLTQAAKQARMTGGGTESKAAYP 952
R A+QAR GGG E +A YP
Sbjct: 237 RPLNVAQQARAKGGGFEQEAHYP 259
>ref|XP_003135513.1| PREDICTED: myotubularin-related protein 1 [Sus scrofa].
Length = 671
Score = 130 bits (328), Expect = 9e-31
Identities = 84/244 (34%), Positives = 127/244 (52%), Gaps = 7/244 (2%)
Frame = +2
Query: 242 GTLCVTGHHLLLSPGAQATP----DLWLLLLRSVDSIEKRVEGDSGT-ITLRCKDLRVLQ 406
GTL VT + + P D+ L ++ V+ I + GD+ I + CKD+R L+
Sbjct: 132 GTLTVTDFKMYFK-NVERDPHFVLDVPLGVISRVEKIGAQSHGDNSCGIEIVCKDMRNLR 190
Query: 407 LEIEGVEAT-LDIARSIEALS-SLESVITSFPFFYRPKSLRLGDAWHFHPPESYYKRVAR 580
L + E T L I ++ + L + T F F Y+ K G W + P + YKR
Sbjct: 191 LAYKQEEQTKLGIFENLNKHAFPLSNGQTLFAFNYKEKFPVNG--WKVYDPVAEYKRQGL 248
Query: 581 ETNAWRLSEANEDFSLCPSYPRAVIVPRAVNNDALARSARFRQGGRFPVLSYYHAPSGTA 760
+W++S+ N ++ LC +YP ++VP +VN+D L++ A FR GR PVLS+ H S
Sbjct: 249 PNESWKISKVNSNYELCDTYPAIIVVPTSVNDDDLSKVAAFRAKGRIPVLSWIHPESQAT 308
Query: 761 VLRSSQPLTGPQKRRCAEDEELLRAVLAGARPGAQGFIVDTRLTQAAKQARMTGGGTESK 940
+ R SQPL GP +RC EDE+ L+ ++ + I D R A + GGG ES+
Sbjct: 309 ITRCSQPLVGPSDKRCKEDEKYLQMIMDANAQAHKLIIFDARQNSVADTNKAKGGGYESE 368
Query: 941 AAYP 952
+AYP
Sbjct: 369 SAYP 372
>ref|XP_003359911.1| PREDICTED: myotubularin-related protein 7-like [Sus scrofa].
Length = 355
Score = 112 bits (281), Expect = 2e-25
Identities = 73/219 (33%), Positives = 114/219 (52%), Gaps = 4/219 (1%)
Frame = +2
Query: 242 GTLCVTGHHLLLSPGAQATPDLWLLLLRSVDSIEKRVEGDSGT-ITLRCKDLRVLQLEIE 418
GTL +T H++ A T +L + +IEK+ +G + +RCK+ ++LQL I
Sbjct: 72 GTLYLTATHVIFVENAPDTRKETWILHSQISTIEKQATTATGCPLLIRCKNFQLLQLVIP 131
Query: 419 GVEATLDIARSIEALSSLESVITSFPFFYRPKSLR--LGDAWHFHPPESYYKRVARETNA 592
D+ S+ L+ + F + PK R W YKR+ N
Sbjct: 132 QERDCHDVYISLIRLARPVKYEELYCFSFNPKLDREEREQGWMLIDLSEEYKRMGLLDNY 191
Query: 593 WRLSEANEDFSLCPSYPRAVIVPRAVNNDALARSARFRQGGRFPVLSYYHAPSGTAVLRS 772
W+LS+ N D+ +C SYP + VP++ + S++FR RFP LSYY+ + ++ RS
Sbjct: 192 WQLSDVNRDYRVCDSYPTELYVPKSATAHIIVGSSKFRSRRRFPALSYYYRDNHASICRS 251
Query: 773 SQPLTGPQKRRCAEDEELLRAVLAGARPGAQG-FIVDTR 886
SQPL+G RC EDE++L+A+ A PG+ ++VDTR
Sbjct: 252 SQPLSG-FSARCLEDEQMLQAI-RKANPGSDFIYVVDTR 288
>ref|XP_003357300.1| PREDICTED: myotubularin-related protein 2 isoform 2 [Sus scrofa].
Length = 571
Score = 107 bits (267), Expect = 1e-23
Identities = 77/247 (31%), Positives = 117/247 (47%), Gaps = 9/247 (3%)
Frame = +2
Query: 236 LRGTLCVTGHHLLLSPGAQATPDLWLLLLRSVDSIEK------RVEGDSGTITLRCKDLR 397
+RGTL VT + L + P + L + +EK R E G T+ CKD+R
Sbjct: 29 VRGTLTVTNYRLYFKSMERDPPFVLDASLGVISRVEKIGGASSRGENSYGLETV-CKDIR 87
Query: 398 VLQLEIEGVEATLDIARSI--EALSSLESVITSFPFF-YRPKSLRLGDAWHFHPPESYYK 568
L+ + T RSI + V + P F + K + + W + Y+
Sbjct: 88 NLRFAHKPEGRT---RRSIFENLMKYAFPVSNNLPLFAFEYKEVFPENGWKLYDSLLEYR 144
Query: 569 RVARETNAWRLSEANEDFSLCPSYPRAVIVPRAVNNDALARSARFRQGGRFPVLSYYHAP 748
R +WR+++ NE + LC +YP ++VP + ++ L R A FR GR PVLS+ H
Sbjct: 145 RQGIPNESWRITKVNERYELCDTYPALLVVPANIPDEELKRVASFRSRGRIPVLSWIHPE 204
Query: 749 SGTAVLRSSQPLTGPQKRRCAEDEELLRAVLAGARPGAQGFIVDTRLTQAAKQARMTGGG 928
S + R SQP+ G +R EDE+ L+A++ + FI D R + A + GGG
Sbjct: 205 SQATITRCSQPMVGVSGKRSKEDEKYLQAIMDSNAQSHKIFIFDARPSVNAVANKAKGGG 264
Query: 929 TESKAAY 949
ES+ AY
Sbjct: 265 YESEDAY 271
>ref|XP_003129845.1| PREDICTED: myotubularin-related protein 2 isoform 1 [Sus scrofa].
Length = 643
Score = 107 bits (267), Expect = 1e-23
Identities = 77/247 (31%), Positives = 117/247 (47%), Gaps = 9/247 (3%)
Frame = +2
Query: 236 LRGTLCVTGHHLLLSPGAQATPDLWLLLLRSVDSIEK------RVEGDSGTITLRCKDLR 397
+RGTL VT + L + P + L + +EK R E G T+ CKD+R
Sbjct: 101 VRGTLTVTNYRLYFKSMERDPPFVLDASLGVISRVEKIGGASSRGENSYGLETV-CKDIR 159
Query: 398 VLQLEIEGVEATLDIARSI--EALSSLESVITSFPFF-YRPKSLRLGDAWHFHPPESYYK 568
L+ + T RSI + V + P F + K + + W + Y+
Sbjct: 160 NLRFAHKPEGRT---RRSIFENLMKYAFPVSNNLPLFAFEYKEVFPENGWKLYDSLLEYR 216
Query: 569 RVARETNAWRLSEANEDFSLCPSYPRAVIVPRAVNNDALARSARFRQGGRFPVLSYYHAP 748
R +WR+++ NE + LC +YP ++VP + ++ L R A FR GR PVLS+ H
Sbjct: 217 RQGIPNESWRITKVNERYELCDTYPALLVVPANIPDEELKRVASFRSRGRIPVLSWIHPE 276
Query: 749 SGTAVLRSSQPLTGPQKRRCAEDEELLRAVLAGARPGAQGFIVDTRLTQAAKQARMTGGG 928
S + R SQP+ G +R EDE+ L+A++ + FI D R + A + GGG
Sbjct: 277 SQATITRCSQPMVGVSGKRSKEDEKYLQAIMDSNAQSHKIFIFDARPSVNAVANKAKGGG 336
Query: 929 TESKAAY 949
ES+ AY
Sbjct: 337 YESEDAY 343
>ref|XP_003135196.2| PREDICTED: myotubularin-related protein 8-like [Sus scrofa].
Length = 709
Score = 105 bits (263), Expect = 3e-23
Identities = 74/243 (30%), Positives = 119/243 (48%), Gaps = 4/243 (1%)
Frame = +2
Query: 233 PLRGTLCVTGHHLLLSPGAQATPDLWLLLLRSVDSIEKRVEGDSGT-ITLRCKDLRVLQL 409
P G+L +T HL+ + A + L + ++E+ G + L CK+ RV
Sbjct: 46 PANGSLYLTATHLIYVEASGAARKETWIALHHIATVERLPITTLGCPLILHCKNFRVAHF 105
Query: 410 EIEGVEATLDIARSIEALSSLESVITSFPFFYRPKSLRL--GDAWHFHPPESYYKRVARE 583
+E +I S+ LS + F Y PKS + W P S + R+
Sbjct: 106 VLESDVVCHEIYISLLKLSRPALPEDLYAFSYNPKSSKKMRERGWRLIDPISDFGRMGIP 165
Query: 584 TNAWRLSEANEDFSLCPSYPRAVIVPRAVNNDALARSARFRQGGRFPVLSYYHAPSGTAV 763
W +++AN ++ +C +YP ++VP++V+ + S++FR R PVLSY + + A+
Sbjct: 166 NRYWAITDANRNYEICSTYPPEIVVPKSVSLGTVVGSSKFRSKERVPVLSYLYKENNAAI 225
Query: 764 LRSSQPLTGPQKRRCAEDEELLRAVLAGARPGAQ-GFIVDTRLTQAAKQARMTGGGTESK 940
R SQPL+G RC +DE LL A+ + PG+Q ++VDTR A R G G E++
Sbjct: 226 CRCSQPLSG-FYTRCIDDELLLEAI-SQTNPGSQFMYVVDTRPKLNAIANRAAGKGYENE 283
Query: 941 AAY 949
Y
Sbjct: 284 DNY 286
>ref|XP_003135195.2| PREDICTED: myotubularin-related protein 8-like, partial [Sus
scrofa].
Length = 678
Score = 105 bits (263), Expect = 3e-23
Identities = 74/243 (30%), Positives = 119/243 (48%), Gaps = 4/243 (1%)
Frame = +2
Query: 233 PLRGTLCVTGHHLLLSPGAQATPDLWLLLLRSVDSIEKRVEGDSGT-ITLRCKDLRVLQL 409
P G+L +T HL+ + A + L + ++E+ G + L CK+ RV
Sbjct: 15 PANGSLYLTATHLIYVEASGAARKETWIALHHIATVERLPITTLGCPLILHCKNFRVAHF 74
Query: 410 EIEGVEATLDIARSIEALSSLESVITSFPFFYRPKSLRL--GDAWHFHPPESYYKRVARE 583
+E +I S+ LS + F Y PKS + W P S + R+
Sbjct: 75 VLESDVVCHEIYISLLKLSRPALPEDLYAFSYNPKSSKKMRERGWRLIDPISDFGRMGIP 134
Query: 584 TNAWRLSEANEDFSLCPSYPRAVIVPRAVNNDALARSARFRQGGRFPVLSYYHAPSGTAV 763
W +++AN ++ +C +YP ++VP++V+ + S++FR R PVLSY + + A+
Sbjct: 135 NRYWAITDANRNYEICSTYPPEIVVPKSVSLGTVVGSSKFRSKERVPVLSYLYKENNAAI 194
Query: 764 LRSSQPLTGPQKRRCAEDEELLRAVLAGARPGAQ-GFIVDTRLTQAAKQARMTGGGTESK 940
R SQPL+G RC +DE LL A+ + PG+Q ++VDTR A R G G E++
Sbjct: 195 CRCSQPLSG-FYTRCIDDELLLEAI-SQTNPGSQFMYVVDTRPKLNAIANRAAGKGYENE 252
Query: 941 AAY 949
Y
Sbjct: 253 DNY 255
>ref|XP_003134245.2| PREDICTED: myotubularin-related protein 7 [Sus scrofa].
Length = 564
Score = 95.9 bits (237), Expect = 3e-20
Identities = 57/154 (37%), Positives = 83/154 (53%), Gaps = 3/154 (1%)
Frame = +2
Query: 497 FFYRPKSLR--LGDAWHFHPPESYYKRVARETNAWRLSEANEDFSLCPSYPRAVIVPRAV 670
F + PK R W YKR+ N W+LS+ N D+ +C SYP + VP++
Sbjct: 16 FSFNPKLDREEREQGWMLIDLSEEYKRMGLLDNYWQLSDVNRDYRVCDSYPTELYVPKSA 75
Query: 671 NNDALARSARFRQGGRFPVLSYYHAPSGTAVLRSSQPLTGPQKRRCAEDEELLRAVLAGA 850
+ S++FR RFP LSYY+ + ++ RSSQPL+G RC EDE++L+A+ A
Sbjct: 76 TAHIIVGSSKFRSRRRFPALSYYYRDNHASICRSSQPLSG-FSARCLEDEQMLQAI-RKA 133
Query: 851 RPGAQG-FIVDTRLTQAAKQARMTGGGTESKAAY 949
PG+ ++VDTR A R G G E++ Y
Sbjct: 134 NPGSDFIYVVDTRPKLNAMANRAAGKGYENEDNY 167
>ref|XP_003135511.2| PREDICTED: myotubularin [Sus scrofa].
Length = 603
Score = 92.4 bits (228), Expect = 3e-19
Identities = 74/248 (29%), Positives = 115/248 (46%), Gaps = 9/248 (3%)
Frame = +2
Query: 233 PLRGTLCVTGHHLLLSPGAQATPDLWLLLLRSVDSIEK------RVEGDSGTITLRCKDL 394
P++G + +T + L L + + + L + IEK R E G + + CKD+
Sbjct: 58 PIKGRVYITNYRLYLRSLETDSALILDVPLGVISRIEKMGGATSRGENSYG-LDITCKDM 116
Query: 395 RVLQ--LEIEGVEATLDIARSIEALS-SLESVITSFPFFYRPKSLRLGDAWHFHPPESYY 565
R L+ L+ EG + D+ + + L + F F K D W + P Y
Sbjct: 117 RNLRFALKQEG-HSRRDMFEILTRYAFPLAHSLPMFAFLNEEKFNV--DGWTVYNPVEEY 173
Query: 566 KRVARETNAWRLSEANEDFSLCPSYPRAVIVPRAVNNDALARSARFRQGGRFPVLSYYHA 745
+R + WR++ N+ + LC +YP ++VP ++ L R A FR R PVLS+ H
Sbjct: 174 RRQGLPNHHWRITFINKCYELCDTYPALLVVPYRAADEDLRRVATFRSRNRIPVLSWIHP 233
Query: 746 PSGTAVLRSSQPLTGPQKRRCAEDEELLRAVLAGARPGAQGFIVDTRLTQAAKQARMTGG 925
+ T ++R SQPL G +R +DE+ L + R + I D R A + TGG
Sbjct: 234 ENKTVIVRCSQPLVGMSGKRNKDDEKYLDVIRETNRQVNKLTIYDARPNVNAVANKATGG 293
Query: 926 GTESKAAY 949
G ES AY
Sbjct: 294 GYESDDAY 301
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 23,226,068
Number of extensions: 620156
Number of successful extensions: 2862
Number of sequences better than 1.0e-05: 14
Number of HSP's gapped: 2846
Number of HSP's successfully gapped: 14
Length of query: 331
Length of database: 11,343,932
Length adjustment: 99
Effective length of query: 232
Effective length of database: 8,879,129
Effective search space: 2059957928
Effective search space used: 2059957928
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003858
(994 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr06 640 0.0
>Sscrofa_Chr06
|| Length = 157765593
Score = 640 bits (323), Expect = 0.0
Identities = 323/323 (100%)
Strand = Plus / Plus
Query: 27 aggggcctccttaacagctgtcctgccggcgtcgccagctgcccagccagttcctgtccc 86
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 82695376 aggggcctccttaacagctgtcctgccggcgtcgccagctgcccagccagttcctgtccc 82695435
Query: 87 tttcggagtccgcgctcacccgcctgacgctcctagagtctgtcctcctgtcgggcccca 146
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 82695436 tttcggagtccgcgctcacccgcctgacgctcctagagtctgtcctcctgtcgggcccca 82695495
Query: 147 ggcccaccgctggaggaatggagttctcggagctgatacgtacgggccaagcccaagccg 206
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 82695496 ggcccaccgctggaggaatggagttctcggagctgatacgtacgggccaagcccaagccg 82695555
Query: 207 agctcctgcggggctcggaggcgcccccgctgcgcggcacgctctgcgtcaccggccacc 266
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 82695556 agctcctgcggggctcggaggcgcccccgctgcgcggcacgctctgcgtcaccggccacc 82695615
Query: 267 acctgctgctgtcgccaggggcccaggcgactccagatctgtggctgctgctgttgcgta 326
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 82695616 acctgctgctgtcgccaggggcccaggcgactccagatctgtggctgctgctgttgcgta 82695675
Query: 327 gtgtcgactccatcgagaagcgg 349
|||||||||||||||||||||||
Sbjct: 82695676 gtgtcgactccatcgagaagcgg 82695698
Score = 351 bits (177), Expect = 5e-94
Identities = 177/177 (100%)
Strand = Plus / Plus
Query: 582 agaccaacgcttggcggctgagcgaggcgaacgaggacttcagtttgtgccccagttacc 641
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 82696444 agaccaacgcttggcggctgagcgaggcgaacgaggacttcagtttgtgccccagttacc 82696503
Query: 642 cccgcgctgtgatcgtgcctcgagcggtgaacaacgatgccctggcgcgcagcgcccgct 701
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 82696504 cccgcgctgtgatcgtgcctcgagcggtgaacaacgatgccctggcgcgcagcgcccgct 82696563
Query: 702 tccgccagggaggccgcttcccggttctcagctactaccacgctcccagcggaactg 758
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 82696564 tccgccagggaggccgcttcccggttctcagctactaccacgctcccagcggaactg 82696620
Score = 254 bits (128), Expect = 8e-65
Identities = 128/128 (100%)
Strand = Plus / Plus
Query: 456 aggcgctgtcctccctggaatcagtcatcacctcctttccattcttctaccgtcccaaga 515
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 82696204 aggcgctgtcctccctggaatcagtcatcacctcctttccattcttctaccgtcccaaga 82696263
Query: 516 gcttgagattgggcgacgcctggcacttccacccgcccgaaagctactacaagagagtag 575
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 82696264 gcttgagattgggcgacgcctggcacttccacccgcccgaaagctactacaagagagtag 82696323
Query: 576 ctcgcgag 583
||||||||
Sbjct: 82696324 ctcgcgag 82696331
Score = 212 bits (107), Expect = 3e-52
Identities = 110/111 (99%)
Strand = Plus / Plus
Query: 348 gggtcgagggtgactccggcaccatcacgctgcgctgtaaggacctgcgagtgttgcagc 407
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 82695877 gggtcgagggtgactccggcaccatcacgctgcgctgtaaggacctgcgagtgttgcagc 82695936
Query: 408 tagaaatagagggcgtggaggcgacgctggacatcgcccgctccatcgagg 458
|||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 82695937 tagaaatagagggcgtagaggcgacgctggacatcgcccgctccatcgagg 82695987
Score = 139 bits (70), Expect = 3e-30
Identities = 70/70 (100%)
Strand = Plus / Plus
Query: 758 gcggtgctacgttccagccagcccctgactgggcctcagaagcggcgttgtgctgaggat 817
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 82697111 gcggtgctacgttccagccagcccctgactgggcctcagaagcggcgttgtgctgaggat 82697170
Query: 818 gaggagctgc 827
||||||||||
Sbjct: 82697171 gaggagctgc 82697180
Score = 58.0 bits (29), Expect = 1e-05
Identities = 29/29 (100%)
Strand = Plus / Plus
Query: 1 tgaggtcctccggcaactcaggcaggagg 29
|||||||||||||||||||||||||||||
Sbjct: 82695199 tgaggtcctccggcaactcaggcaggagg 82695227
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 19,595,451
Number of extensions: 93
Number of successful extensions: 93
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 93
Number of HSP's successfully gapped: 6
Length of query: 994
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 973
Effective length of database: 2,808,413,156
Effective search space: 2732586000788
Effective search space used: 2732586000788
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 29 (58.0 bits)