Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003862
(901 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_002691756.1| PREDICTED: CG11874-like [Bos taurus]. 271 4e-73
Alignment gi|XP_002684011.1| PREDICTED: alpha 1,2-mannosidase-like, parti... 189 3e-48
Alignment gi|NP_001192901.1| mannosyl-oligosaccharide 1,2-alpha-mannosida... 52 7e-07
Alignment gi|XP_002690124.1| PREDICTED: Man9-mannosidase-like [Bos taurus]. 52 7e-07
Alignment gi|NP_001193806.1| mannosidase, alpha, class 1A, member 2 [Bos ... 49 5e-06
>ref|XP_002691756.1| PREDICTED: CG11874-like [Bos taurus].
Length = 718
Score = 271 bits (694), Expect = 4e-73
Identities = 153/316 (48%), Positives = 180/316 (56%), Gaps = 66/316 (20%)
Frame = +1
Query: 151 MYPPPPEPRRDFISVTLSSGRSYDDSKGPRRRSCWRQWKQLSRLQRNVIXXXXXXXXXXX 330
MYPPP RRDFISVTLS GRSYD +G RRRSCWR+WKQLSRLQR V+
Sbjct: 1 MYPPPAPARRDFISVTLSPGRSYDGGQGLRRRSCWRKWKQLSRLQRTVVLFLLVVVMLFG 60
Query: 331 XXSFVSLAEEWKALEGRSSEELNVRPANPPILPAPRKAEAKPETLPGGPPQRPQRHFRRG 510
S+V +A+EW A++ RS+ +RPANPP+LPAP+KA PE + G PQ+PQRHFRRG
Sbjct: 61 LLSYVHVADEWTAVDSRSAAAGQMRPANPPVLPAPQKAAENPEAVAGLSPQKPQRHFRRG 120
Query: 511 PPKLQMRAPESDAKDRGQD-XXXXXXXXXXXGWEGAAQRTS--WRGAATEPEQGTRDPLR 681
PP LQ+RAP+ D ++R QD GW AQR WRGA T+ EQG R P +
Sbjct: 121 PPNLQIRAPDGDPQERRQDRAQRRAEVVGEAGWGAEAQRDGLRWRGAGTKLEQGPRHPPK 180
Query: 682 KAEGTPKP-SPQAARI-------------------------------------------- 726
KAE P QA RI
Sbjct: 181 KAEFFGWPFQQQALRIRASRMLQLQELHMQEAGLSACVPVTGLGAAVHLCPLGMAPGRWL 240
Query: 727 ------PQDPAQ------------QNERQQAVVEAFRHAWAGYHKFAWGHDELKPVSRSF 852
PQ PA+ QNERQ+AVV+AF HAWAGY KFAWGHDELKP++RSF
Sbjct: 241 WADVQSPQAPAREVKGLWVAGLTPQNERQKAVVDAFLHAWAGYRKFAWGHDELKPLTRSF 300
Query: 853 AEWFGLGLTLIDSLDT 900
+EWFGLGLTLID+LDT
Sbjct: 301 SEWFGLGLTLIDALDT 316
>ref|XP_002684011.1| PREDICTED: alpha 1,2-mannosidase-like, partial [Bos taurus].
Length = 429
Score = 189 bits (480), Expect = 3e-48
Identities = 92/143 (64%), Positives = 109/143 (76%), Gaps = 3/143 (2%)
Frame = +1
Query: 481 QRPQRHFRRGPPKLQMRAPESDAKDRGQDXXXXXXXXXXX-GWEGAAQRT--SWRGAATE 651
Q+PQRHFRRGPP LQ+RAP+ D ++R QD GW AQR SWRGA T+
Sbjct: 73 QKPQRHFRRGPPNLQIRAPDGDPQERRQDRAQRRAEVVGEAGWGAEAQRDGLSWRGAGTK 132
Query: 652 PEQGTRDPLRKAEGTPKPSPQAARIPQDPAQQNERQQAVVEAFRHAWAGYHKFAWGHDEL 831
P+QGT P +KAE +PSP+AARI +PA QNERQ+AVV+AF HAWAGY KFAWGHDEL
Sbjct: 133 PQQGTEPPGKKAELPARPSPKAARIQANPAPQNERQKAVVDAFLHAWAGYRKFAWGHDEL 192
Query: 832 KPVSRSFAEWFGLGLTLIDSLDT 900
KP++RSF+EWFGLGLTLID+LDT
Sbjct: 193 KPLTRSFSEWFGLGLTLIDALDT 215
>ref|NP_001192901.1| mannosyl-oligosaccharide 1,2-alpha-mannosidase IA [Bos taurus].
Length = 659
Score = 52.0 bits (123), Expect = 7e-07
Identities = 33/102 (32%), Positives = 51/102 (50%), Gaps = 13/102 (12%)
Frame = +1
Query: 634 RGAATEPEQGTRDPLRKAEGTPKPSP-------QAARIPQDPAQQ--NERQQAVVEAFRH 786
R E E+ +D L G + P I ++PA E+++ + E +H
Sbjct: 152 RDILMEKEKVAQDQLSNRAGFRRLPPVYLAPVNTIGAIDREPADAAIREKREKIKEMMKH 211
Query: 787 AWAGYHKFAWGHDELKPVSRS--FAEWFG--LGLTLIDSLDT 900
AW Y ++AWG +ELKPVS+ + FG G T++D+LDT
Sbjct: 212 AWKNYKRYAWGKNELKPVSKGGHSSSLFGNIQGATIVDALDT 253
>ref|XP_002690124.1| PREDICTED: Man9-mannosidase-like [Bos taurus].
Length = 659
Score = 52.0 bits (123), Expect = 7e-07
Identities = 33/102 (32%), Positives = 51/102 (50%), Gaps = 13/102 (12%)
Frame = +1
Query: 634 RGAATEPEQGTRDPLRKAEGTPKPSP-------QAARIPQDPAQQ--NERQQAVVEAFRH 786
R E E+ +D L G + P I ++PA E+++ + E +H
Sbjct: 152 RDILMEKEKVAQDQLSNRAGFRRLPPVYLAPVNTIGAIDREPADAAIREKREKIKEMMKH 211
Query: 787 AWAGYHKFAWGHDELKPVSRS--FAEWFG--LGLTLIDSLDT 900
AW Y ++AWG +ELKPVS+ + FG G T++D+LDT
Sbjct: 212 AWKNYKRYAWGKNELKPVSKGGHSSSLFGNIQGATIVDALDT 253
>ref|NP_001193806.1| mannosidase, alpha, class 1A, member 2 [Bos taurus].
Length = 641
Score = 49.3 bits (116), Expect = 5e-06
Identities = 21/55 (38%), Positives = 35/55 (63%), Gaps = 5/55 (9%)
Frame = +1
Query: 751 ERQQAVVEAFRHAWAGYHKFAWGHDELKPVSRS--FAEWFG---LGLTLIDSLDT 900
E+++ + E +HAW Y + WGH+EL+P++R FG +G T++D+LDT
Sbjct: 179 EKREKIKEMMKHAWDNYRIYGWGHNELRPIARKGHSTNIFGTSQMGATIVDALDT 233
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.315 0.132 0.421
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 34,113,812
Number of extensions: 1148872
Number of successful extensions: 10915
Number of sequences better than 1.0e-05: 5
Number of HSP's gapped: 10582
Number of HSP's successfully gapped: 6
Length of query: 300
Length of database: 17,681,374
Length adjustment: 102
Effective length of query: 198
Effective length of database: 14,306,398
Effective search space: 2832666804
Effective search space used: 2832666804
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 34 (17.7 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003862
(901 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_537786.2| PREDICTED: similar to Endoplasmic reticulum man... 312 3e-85
Alignment gi|XP_850018.1| PREDICTED: similar to mannosidase, alpha, class... 214 7e-56
Alignment gi|XP_533481.2| PREDICTED: similar to mannosidase, alpha, class... 52 1e-06
Alignment gi|XP_849121.1| PREDICTED: similar to Mannosyl-oligosaccharide ... 49 5e-06
Alignment gi|XP_857898.1| PREDICTED: similar to Mannosyl-oligosaccharide ... 49 5e-06
Alignment gi|XP_540259.2| PREDICTED: similar to Mannosyl-oligosaccharide ... 49 5e-06
>ref|XP_537786.2| PREDICTED: similar to Endoplasmic reticulum
mannosyl-oligosaccharide 1,2-alpha-mannosidase (ER
alpha-1,2-mannosidase) (Mannosidase alpha class 1B
member 1) (Man9GlcNAc2-specific processing
alpha-mannosidase) [Canis familiaris].
Length = 660
Score = 312 bits (799), Expect = 3e-85
Identities = 156/255 (61%), Positives = 183/255 (71%), Gaps = 5/255 (1%)
Frame = +1
Query: 151 MYPP--PPEPRRDFISVTLSSGRSYDDSKGPRRRSCWRQWKQLSRLQRNVIXXXXXXXXX 324
MYPP PP P RDFISVTLS G+SYD SK RRRSCWR+WKQLSRLQRNVI
Sbjct: 1 MYPPLPPPAPHRDFISVTLSLGQSYDGSKSWRRRSCWRKWKQLSRLQRNVILFSLTFLML 60
Query: 325 XXXXSFVSLAEEWKALEGRSSEELNVRPANPPILPAPRKAEAKPETLPGGPPQRPQRHFR 504
S++S+A++W A++GRS+EE RPA+PP+LPAP+KA+A PE + G PQ+PQRHFR
Sbjct: 61 CGFLSYISVADQWTAVDGRSAEEQKTRPADPPVLPAPQKADAHPENMQGALPQKPQRHFR 120
Query: 505 RGPPKLQMRAPESDAKD-RGQDXXXXXXXXXXXGWEGAAQRT--SWRGAATEPEQGTRDP 675
RGPP L +RAP D++D R D E + QRT SWRGA EP+ GT P
Sbjct: 121 RGPPNLHLRAPGKDSEDPRQGDTKRRDEAVGDAHQEESTQRTVVSWRGAVIEPQPGTELP 180
Query: 676 LRKAEGTPKPSPQAARIPQDPAQQNERQQAVVEAFRHAWAGYHKFAWGHDELKPVSRSFA 855
RKAE +PS QA RI A NERQ+AV++AFRHAWAGY KFAWGHDELKPVSRSF+
Sbjct: 181 SRKAEAPARPSSQAPRIQNPAASPNERQRAVIDAFRHAWAGYRKFAWGHDELKPVSRSFS 240
Query: 856 EWFGLGLTLIDSLDT 900
EWFGLGLTLID+LDT
Sbjct: 241 EWFGLGLTLIDALDT 255
>ref|XP_850018.1| PREDICTED: similar to mannosidase, alpha, class 1B, member 1 [Canis
familiaris].
Length = 299
Score = 214 bits (546), Expect = 7e-56
Identities = 113/202 (55%), Positives = 136/202 (67%), Gaps = 5/202 (2%)
Frame = +1
Query: 151 MYPP--PPEPRRDFISVTLSSGRSYDDSKGPRRRSCWRQWKQLSRLQRNVIXXXXXXXXX 324
MYPP PP P RDFISVTLS G+SYD SK RRRSCWR+WKQLSRLQRNVI
Sbjct: 1 MYPPLPPPAPHRDFISVTLSLGQSYDGSKSWRRRSCWRKWKQLSRLQRNVILFSLTFLML 60
Query: 325 XXXXSFVSLAEEWKALEGRSSEELNVRPANPPILPAPRKAEAKPETLPGGPPQRPQRHFR 504
S++S+A++W A++GRS+EE RPA+PP+LPAP+KA+A PE + G PQ+PQRHFR
Sbjct: 61 CGFLSYISVADQWTAVDGRSAEEQKTRPADPPVLPAPQKADAHPENMQGALPQKPQRHFR 120
Query: 505 RGPPKLQMRAPESDAKD-RGQDXXXXXXXXXXXGWEGAAQRT--SWRGAATEPEQGTRDP 675
RGPP L +RAP D++D R D E + QRT SWRGA EP+ GT P
Sbjct: 121 RGPPNLHLRAPGKDSEDPRQGDTKRRDEAVGDAHQEESTQRTVVSWRGAVIEPQPGTELP 180
Query: 676 LRKAEGTPKPSPQAARIPQDPA 741
RKAE +PS QA RI Q+PA
Sbjct: 181 SRKAEAPARPSSQAPRI-QNPA 201
>ref|XP_533481.2| PREDICTED: similar to mannosidase, alpha, class 1A, member 1 [Canis
familiaris].
Length = 627
Score = 51.6 bits (122), Expect = 1e-06
Identities = 28/70 (40%), Positives = 43/70 (61%), Gaps = 4/70 (5%)
Frame = +1
Query: 703 PSPQAARIPQDPAQQNERQQAVVEAFRHAWAGYHKFAWGHDELKPVSRS--FAEWFG--L 870
P AR P D A +++R + + E +HAW Y ++AWG +ELKP+S+ + FG
Sbjct: 153 PVGAVAREPADAAVRDKRAK-IREMMKHAWNNYKRYAWGLNELKPISKEGHSSSLFGSIK 211
Query: 871 GLTLIDSLDT 900
G T++D+LDT
Sbjct: 212 GATIVDALDT 221
>ref|XP_849121.1| PREDICTED: similar to Mannosyl-oligosaccharide
1,2-alpha-mannosidase IB (Processing
alpha-1,2-mannosidase IB) (Alpha-1,2-mannosidase IB)
(Mannosidase alpha class 1A member 2) isoform 3 [Canis
familiaris].
Length = 658
Score = 49.3 bits (116), Expect = 5e-06
Identities = 24/76 (31%), Positives = 41/76 (53%), Gaps = 8/76 (10%)
Frame = +1
Query: 697 PKPSPQAARIPQDPAQQNE---RQQAVVEAFRHAWAGYHKFAWGHDELKPVSRS--FAEW 861
P P P I + N+ +++ + E +HAW Y + WGH+EL+P+++
Sbjct: 175 PVPIPNLIGINGGDPEDNDIRKKREKIKEMMKHAWDNYRMYGWGHNELRPIAKKGHSTNI 234
Query: 862 FG---LGLTLIDSLDT 900
FG +G T++D+LDT
Sbjct: 235 FGNSQMGATIVDALDT 250
>ref|XP_857898.1| PREDICTED: similar to Mannosyl-oligosaccharide
1,2-alpha-mannosidase IB (Processing
alpha-1,2-mannosidase IB) (Alpha-1,2-mannosidase IB)
(Mannosidase alpha class 1A member 2) isoform 5 [Canis
familiaris].
Length = 615
Score = 49.3 bits (116), Expect = 5e-06
Identities = 24/76 (31%), Positives = 41/76 (53%), Gaps = 8/76 (10%)
Frame = +1
Query: 697 PKPSPQAARIPQDPAQQNE---RQQAVVEAFRHAWAGYHKFAWGHDELKPVSRS--FAEW 861
P P P I + N+ +++ + E +HAW Y + WGH+EL+P+++
Sbjct: 158 PVPIPNLIGINGGDPEDNDIRKKREKIKEMMKHAWDNYRMYGWGHNELRPIAKKGHSTNI 217
Query: 862 FG---LGLTLIDSLDT 900
FG +G T++D+LDT
Sbjct: 218 FGSSQMGATIVDALDT 233
>ref|XP_540259.2| PREDICTED: similar to Mannosyl-oligosaccharide
1,2-alpha-mannosidase IB (Processing
alpha-1,2-mannosidase IB) (Alpha-1,2-mannosidase IB)
(Mannosidase alpha class 1A member 2) isoform 1 [Canis
familiaris].
Length = 641
Score = 49.3 bits (116), Expect = 5e-06
Identities = 24/76 (31%), Positives = 41/76 (53%), Gaps = 8/76 (10%)
Frame = +1
Query: 697 PKPSPQAARIPQDPAQQNE---RQQAVVEAFRHAWAGYHKFAWGHDELKPVSRS--FAEW 861
P P P I + N+ +++ + E +HAW Y + WGH+EL+P+++
Sbjct: 158 PVPIPNLIGINGGDPEDNDIRKKREKIKEMMKHAWDNYRMYGWGHNELRPIAKKGHSTNI 217
Query: 862 FG---LGLTLIDSLDT 900
FG +G T++D+LDT
Sbjct: 218 FGSSQMGATIVDALDT 233
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.315 0.132 0.421
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 35,682,550
Number of extensions: 1174790
Number of successful extensions: 11515
Number of sequences better than 1.0e-05: 6
Number of HSP's gapped: 11195
Number of HSP's successfully gapped: 6
Length of query: 300
Length of database: 18,874,504
Length adjustment: 102
Effective length of query: 198
Effective length of database: 15,474,232
Effective search space: 3063897936
Effective search space used: 3063897936
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 34 (17.7 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003862
(901 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_057303.2| endoplasmic reticulum mannosyl-oligosaccharide ... 281 7e-76
Alignment gi|NP_006690.1| mannosyl-oligosaccharide 1,2-alpha-mannosidase ... 52 1e-06
Alignment gi|NP_057417.3| serine/arginine repetitive matrix protein 2 [Ho... 43 6e-06
>ref|NP_057303.2| endoplasmic reticulum mannosyl-oligosaccharide
1,2-alpha-mannosidase [Homo sapiens].
Length = 699
Score = 281 bits (718), Expect = 7e-76
Identities = 152/283 (53%), Positives = 177/283 (62%), Gaps = 13/283 (4%)
Frame = +1
Query: 91 SEPSLLTPP--GGEVSRTSAAVMYPPPPEP-RRDFISVTLSSGRSYDDSKGPRRRSCWRQ 261
S+ LTPP G + + VMYPPPP P RDFISVTLS G +YD+SK RRRSCWR+
Sbjct: 15 SQSDFLTPPVGGAPWAVATTVVMYPPPPPPPHRDFISVTLSFGENYDNSKSWRRRSCWRK 74
Query: 262 WKQLSRLQRNVIXXXXXXXXXXXXXSFVSLAEEWKALEGRSSEELNVRP-------ANPP 420
WKQLSRLQRN+I +++LA+ WKAL R EE +RP ANPP
Sbjct: 75 WKQLSRLQRNMILFLLAFLLFCGLLFYINLADHWKALAFRLEEEQKMRPEIAGLKPANPP 134
Query: 421 ILPAPRKAEAKPETLPGGPPQRPQRHFRRGPPKLQMRAPESDAKDRGQDXXXXXXXXXXX 600
+LPAP+KA+ PE LP Q+ QRH +RGPP LQ+R P D KD Q+
Sbjct: 135 VLPAPQKADTDPENLPEISSQKTQRHIQRGPPHLQIRPPSQDLKDGTQEEATKRQEAPVD 194
Query: 601 GW-EGAAQRT--SWRGAATEPEQGTRDPLRKAEGTPKPSPQAARIPQDPAQQNERQQAVV 771
EG QRT SWRGA EPEQGT P R+AE KP AR P N RQ+ V+
Sbjct: 195 PRPEGDPQRTVISWRGAVIEPEQGTELPSRRAEVPTKPPLPPARTQGTPVHLNYRQKGVI 254
Query: 772 EAFRHAWAGYHKFAWGHDELKPVSRSFAEWFGLGLTLIDSLDT 900
+ F HAW GY KFAWGHDELKPVSRSF+EWFGLGLTLID+LDT
Sbjct: 255 DVFLHAWKGYRKFAWGHDELKPVSRSFSEWFGLGLTLIDALDT 297
>ref|NP_006690.1| mannosyl-oligosaccharide 1,2-alpha-mannosidase IB [Homo sapiens].
Length = 641
Score = 51.6 bits (122), Expect = 1e-06
Identities = 26/76 (34%), Positives = 41/76 (53%), Gaps = 8/76 (10%)
Frame = +1
Query: 697 PKPSPQAARIPQDPAQQN---ERQQAVVEAFRHAWAGYHKFAWGHDELKPVSRS--FAEW 861
P P P I + N E+++ + E +HAW Y + WGH+EL+P++R
Sbjct: 158 PVPIPNLVGIRGGDPEDNDIREKREKIKEMMKHAWDNYRTYGWGHNELRPIARKGHSPNI 217
Query: 862 FG---LGLTLIDSLDT 900
FG +G T++D+LDT
Sbjct: 218 FGSSQMGATIVDALDT 233
>ref|NP_057417.3| serine/arginine repetitive matrix protein 2 [Homo sapiens].
Length = 2752
Score = 43.1 bits (100), Expect(2) = 6e-06
Identities = 56/193 (29%), Positives = 68/193 (35%), Gaps = 13/193 (6%)
Frame = +2
Query: 275 RGYSGT*FSSCWRFSRSAASCPSSAWLRSGKPWRAGRRKN*T*DQPTHPSCQLLGKQRRS 454
RG+S + S WR SRSA W RS P R GR ++ P P G R
Sbjct: 503 RGHSRS-RSPQWRRSRSA-----QRWGRSRSPQRRGRSRS-----PQRP-----GWSRSR 546
Query: 455 RKPSRGAHRRGLRGISAGDPPSCR*EPPRATPRTGGRXXXXXXXXXXXXAGKAPRREPAG 634
RG R RG S P+ R TP GR + RR
Sbjct: 547 NTQRRGRSRSARRGRSHSRSPATRGRSRSRTPARRGRSRSRTPARRRSRSRTPTRRRSRS 606
Query: 635 EEP-------------RQSRSRAPETP*GRQRAPPSLPRRLRGSHRIQPSRTSASRPWWR 775
P R+SR+R+P R R+P RR S P+R SR R
Sbjct: 607 RTPARRGRSRSRTPARRRSRTRSPVRRRSRSRSP---ARRSGRSRSRTPARRGRSRS--R 661
Query: 776 PSATRGPGTTSLP 814
A RG + P
Sbjct: 662 TPARRGRSRSRTP 674
Score = 25.0 bits (53), Expect(2) = 6e-06
Identities = 20/78 (25%), Positives = 33/78 (42%), Gaps = 4/78 (5%)
Frame = +1
Query: 28 SGPRCDGSSRQQQDRPASQPRSEPSLLTPPGGEVSRTSAAVMYPPPPEP----RRDFISV 195
+ P D S + ++ SE S +P +VSR +++ P P P R+ S
Sbjct: 397 ASPTRDRSPPKSPEKLPQSSSSESSPPSPQPTKVSRHASSSPESPKPAPAPGSHREISSS 456
Query: 196 TLSSGRSYDDSKGPRRRS 249
S RS+ +K + S
Sbjct: 457 PTSKNRSHGRAKRDKSHS 474
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.315 0.132 0.421
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 34,541,417
Number of extensions: 1114044
Number of successful extensions: 10162
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 9868
Number of HSP's successfully gapped: 4
Length of query: 300
Length of database: 18,297,164
Length adjustment: 102
Effective length of query: 198
Effective length of database: 14,934,836
Effective search space: 2957097528
Effective search space used: 2957097528
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 34 (17.7 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003862
(901 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001025154.1| mannosidase, alpha, class 1B, member 1 [Mus ... 262 2e-70
Alignment gi|NP_034893.1| mannosyl-oligosaccharide 1,2-alpha-mannosidase ... 51 1e-06
Alignment gi|NP_032574.1| mannosyl-oligosaccharide 1,2-alpha-mannosidase ... 50 2e-06
>ref|NP_001025154.1| mannosidase, alpha, class 1B, member 1 [Mus musculus].
Length = 658
Score = 262 bits (670), Expect = 2e-70
Identities = 139/256 (54%), Positives = 167/256 (65%), Gaps = 6/256 (2%)
Frame = +1
Query: 151 MYPPP---PEPRRDFISVTLSSGRSYDDSKGPRRRSCWRQWKQLSRLQRNVIXXXXXXXX 321
MYPPP P P RDFISVTLS G SYD+SK RRRSCWR+WKQLSRLQRNVI
Sbjct: 1 MYPPPAPPPAPHRDFISVTLSLGESYDNSKSRRRRSCWRKWKQLSRLQRNVILFVLGFLI 60
Query: 322 XXXXXSFVSLAEEWKALEGRSSEELNVRPANPPILPAPRKAEAKPETLPGGPPQRPQRHF 501
+ A++WKAL GR +E ++ P+LPAP+K A+ E Q+ QRHF
Sbjct: 61 LCGFLYSLHTADQWKALSGRPAEVEKMKQEVLPVLPAPQKESAEQEGFADILSQKRQRHF 120
Query: 502 RRGPPKLQMRAPESDAKDRGQDXXXXXXXXXXXGW-EGAAQRT--SWRGAATEPEQGTRD 672
RRGPP LQ+R P + +KD QD E QRT SWRGA EPEQ T
Sbjct: 121 RRGPPHLQIRPPNTVSKDGMQDDAKEREAALGKAQQEENTQRTVISWRGAVIEPEQATEL 180
Query: 673 PLRKAEGTPKPSPQAARIPQDPAQQNERQQAVVEAFRHAWAGYHKFAWGHDELKPVSRSF 852
P ++AE + KP A++I ++PA NERQ+ V+EAF HAW GY KFAWGHDELKPVS++F
Sbjct: 181 PYKRAEASIKPLVLASKIWKEPAPPNERQKGVIEAFLHAWKGYQKFAWGHDELKPVSKTF 240
Query: 853 AEWFGLGLTLIDSLDT 900
+EWFGLGLTLID+LDT
Sbjct: 241 SEWFGLGLTLIDALDT 256
>ref|NP_034893.1| mannosyl-oligosaccharide 1,2-alpha-mannosidase IB [Mus musculus].
Length = 641
Score = 51.2 bits (121), Expect = 1e-06
Identities = 27/77 (35%), Positives = 43/77 (55%), Gaps = 9/77 (11%)
Frame = +1
Query: 697 PKPSPQAARI----PQDPAQQNERQQAVVEAFRHAWAGYHKFAWGHDELKPVSRS--FAE 858
P P PQ + P+D + +R + + E +HAW Y + WGH+EL+P++R
Sbjct: 158 PVPVPQRVGVSGGDPEDMEIKKKRDK-IKEMMKHAWDNYRTYGWGHNELRPIARKGHSTN 216
Query: 859 WFG---LGLTLIDSLDT 900
FG +G T++D+LDT
Sbjct: 217 IFGSSQMGATIVDALDT 233
>ref|NP_032574.1| mannosyl-oligosaccharide 1,2-alpha-mannosidase IA [Mus musculus].
Length = 655
Score = 50.4 bits (119), Expect = 2e-06
Identities = 36/101 (35%), Positives = 51/101 (50%), Gaps = 12/101 (11%)
Frame = +1
Query: 634 RGAATEPEQGTRDPLRKAE---GTPK-----PSPQAARIPQDPAQQNERQQAVVEAFRHA 789
R E E+ +D LR + G PK P R P D A E++ + E HA
Sbjct: 150 RDILLEKEKVAQDQLRDKDLFRGLPKVDFLPPVGVENREPAD-ATIREKRAKIKEMMTHA 208
Query: 790 WAGYHKFAWGHDELKPVSRS--FAEWFG--LGLTLIDSLDT 900
W Y ++AWG +ELKP+S+ + FG G T++D+LDT
Sbjct: 209 WNNYKRYAWGLNELKPISKEGHSSSLFGNIKGATIVDALDT 249
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.315 0.132 0.421
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 28,708,040
Number of extensions: 900098
Number of successful extensions: 7913
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 7645
Number of HSP's successfully gapped: 3
Length of query: 300
Length of database: 15,617,559
Length adjustment: 101
Effective length of query: 199
Effective length of database: 12,583,923
Effective search space: 2504200677
Effective search space used: 2504200677
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 34 (17.7 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003862
(901 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_003362228.1| PREDICTED: endoplasmic reticulum mannosyl-ol... 348 2e-96
Alignment gi|NP_999050.1| mannosyl-oligosaccharide 1,2-alpha-mannosidase ... 51 1e-06
Alignment gi|XP_001927657.3| PREDICTED: mannosyl-oligosaccharide 1,2-alph... 50 1e-06
>ref|XP_003362228.1| PREDICTED: endoplasmic reticulum mannosyl-oligosaccharide
1,2-alpha-mannosidase-like, partial [Sus scrofa].
Length = 771
Score = 348 bits (893), Expect = 2e-96
Identities = 167/178 (93%), Positives = 167/178 (93%)
Frame = +1
Query: 367 ALEGRSSEELNVRPANPPILPAPRKAEAKPETLPGGPPQRPQRHFRRGPPKLQMRAPESD 546
ALEGRSSEELNVRPANPPILPAPRKAEAKPETLPGGPPQRPQRHFRRGPPKLQMRAPESD
Sbjct: 207 ALEGRSSEELNVRPANPPILPAPRKAEAKPETLPGGPPQRPQRHFRRGPPKLQMRAPESD 266
Query: 547 AKDRGQDXXXXXXXXXXXGWEGAAQRTSWRGAATEPEQGTRDPLRKAEGTPKPSPQAARI 726
AKDRGQD GWEGAAQRTSWRGAATEPEQGTRDPLRKAEGTPKPSPQAARI
Sbjct: 267 AKDRGQDAAAPGAGAGGAGWEGAAQRTSWRGAATEPEQGTRDPLRKAEGTPKPSPQAARI 326
Query: 727 PQDPAQQNERQQAVVEAFRHAWAGYHKFAWGHDELKPVSRSFAEWFGLGLTLIDSLDT 900
PQDPAQQNERQQAVVEAFRHAWAGYHKFAWGHDELKPVSRSFAEWFGLGLTLIDSLDT
Sbjct: 327 PQDPAQQNERQQAVVEAFRHAWAGYHKFAWGHDELKPVSRSFAEWFGLGLTLIDSLDT 384
>ref|NP_999050.1| mannosyl-oligosaccharide 1,2-alpha-mannosidase IA [Sus scrofa].
Length = 659
Score = 50.8 bits (120), Expect = 1e-06
Identities = 33/99 (33%), Positives = 49/99 (49%), Gaps = 10/99 (10%)
Frame = +1
Query: 634 RGAATEPEQGTRDPLRKAEGTPKPS----PQAARIPQDPAQQ--NERQQAVVEAFRHAWA 795
R E E+ +D + G P P I ++PA E++ + E +HAW
Sbjct: 155 RDILMEKEKVAQDQMSNRMGFRLPPVYLVPLIGAIDREPADAAVREKRAKIKEMMKHAWN 214
Query: 796 GYHKFAWGHDELKPVSRS--FAEWFG--LGLTLIDSLDT 900
Y +AWG +ELKPVS+ + FG G T++D+LDT
Sbjct: 215 NYKLYAWGKNELKPVSKGGHSSSLFGNIKGATIVDALDT 253
>ref|XP_001927657.3| PREDICTED: mannosyl-oligosaccharide 1,2-alpha-mannosidase IB,
partial [Sus scrofa].
Length = 597
Score = 50.4 bits (119), Expect = 1e-06
Identities = 23/63 (36%), Positives = 38/63 (60%), Gaps = 7/63 (11%)
Frame = +1
Query: 733 DPAQQN--ERQQAVVEAFRHAWAGYHKFAWGHDELKPVSRS--FAEWFG---LGLTLIDS 891
DP + E+++ + E +HAW Y + WGH+EL+P++R FG +G T++D+
Sbjct: 171 DPGDNDLREKREKIKEMMKHAWDNYRTYGWGHNELRPIARKGHSTNIFGSSQMGATIVDA 230
Query: 892 LDT 900
LDT
Sbjct: 231 LDT 233
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.315 0.132 0.421
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 22,422,784
Number of extensions: 789396
Number of successful extensions: 7145
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 6965
Number of HSP's successfully gapped: 3
Length of query: 300
Length of database: 11,343,932
Length adjustment: 98
Effective length of query: 202
Effective length of database: 8,904,026
Effective search space: 1798613252
Effective search space used: 1798613252
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 33 (17.3 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003862
(901 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|GL896485.1| Sus scrofa unplaced genomic scaffold chrU_scaffol... 329 2e-87
>gb|GL896485.1| Sus scrofa unplaced genomic scaffold chrU_scaffold820
Length = 10065
Score = 329 bits (166), Expect = 2e-87
Identities = 166/166 (100%)
Strand = Plus / Plus
Query: 736 ccagcccagcagaacgagcgccagcaggccgtggtggaggccttccgccacgcgtgggcc 795
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4881 ccagcccagcagaacgagcgccagcaggccgtggtggaggccttccgccacgcgtgggcc 4940
Query: 796 gggtaccacaagtttgcctggggccacgacgagctgaagcccgtgtcgcggtccttcgcc 855
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4941 gggtaccacaagtttgcctggggccacgacgagctgaagcccgtgtcgcggtccttcgcc 5000
Query: 856 gagtggttcggcctcggcctcacgctgatcgactccttggacacca 901
||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5001 gagtggttcggcctcggcctcacgctgatcgactccttggacacca 5046
Score = 234 bits (118), Expect = 7e-59
Identities = 118/118 (100%)
Strand = Plus / Plus
Query: 366 agccctggagggcaggtcgtcggaagaactgaacgtgagaccagccaacccacccatcct 425
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2362 agccctggagggcaggtcgtcggaagaactgaacgtgagaccagccaacccacccatcct 2421
Query: 426 gccagctcctcggaaagcagaggcgaagccggaaaccctcccggggggcccaccgcag 483
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2422 gccagctcctcggaaagcagaggcgaagccggaaaccctcccggggggcccaccgcag 2479
Score = 226 bits (114), Expect = 2e-56
Identities = 114/114 (100%)
Strand = Plus / Plus
Query: 626 ccagctggagaggagccgcgacagagccggagcagggcacccgagaccccttgaggaagg 685
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3868 ccagctggagaggagccgcgacagagccggagcagggcacccgagaccccttgaggaagg 3927
Query: 686 cagagggcacccccaagccttccccgcaggctgcgaggatcccacaggatccag 739
||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3928 cagagggcacccccaagccttccccgcaggctgcgaggatcccacaggatccag 3981
Score = 218 bits (110), Expect = 4e-54
Identities = 110/110 (100%)
Strand = Plus / Plus
Query: 258 gcaatggaagcagctgtcgaggttacagcggaacgtgattctcctcctgctggcgtttct 317
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1577 gcaatggaagcagctgtcgaggttacagcggaacgtgattctcctcctgctggcgtttct 1636
Query: 318 cgcgctctgcggcctcctgtccttcgtcagcctggctgaggagtggaaag 367
||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1637 cgcgctctgcggcctcctgtccttcgtcagcctggctgaggagtggaaag 1686
Score = 168 bits (85), Expect = 3e-39
Identities = 88/89 (98%)
Strand = Plus / Plus
Query: 479 cgcagaggcctcagaggcatttccgccggggaccccccaagctgcagatgagagcccccg 538
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3504 cgcagaggcctcagaggcatttccgccggggaccccccaagctgcagatgagagcccccg 3563
Query: 539 agagcgacgccaaggacagggggcaggat 567
||||||| |||||||||||||||||||||
Sbjct: 3564 agagcgatgccaaggacagggggcaggat 3592
Score = 60.0 bits (30), Expect = 2e-06
Identities = 30/30 (100%)
Strand = Plus / Plus
Query: 600 tggctgggaaggcgccgcgcagagaaccag 629
||||||||||||||||||||||||||||||
Sbjct: 3625 tggctgggaaggcgccgcgcagagaaccag 3654
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 17,185,445
Number of extensions: 112
Number of successful extensions: 112
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 112
Number of HSP's successfully gapped: 6
Length of query: 901
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 880
Effective length of database: 2,808,413,156
Effective search space: 2471403577280
Effective search space used: 2471403577280
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 29 (58.0 bits)