Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003876
(1560 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_776709.1| cleavage and polyadenylation specificity factor... 946 0.0
Alignment gi|NP_001094578.1| integrator complex subunit 11 [Bos taurus]. 335 7e-92
Alignment gi|XP_002694180.1| PREDICTED: cleavage and polyadenylation spec... 335 9e-92
Alignment gi|XP_883112.3| PREDICTED: cleavage and polyadenylation specifi... 314 1e-85
Alignment gi|NP_787002.1| cleavage and polyadenylation specificity factor... 140 2e-33
Alignment gi|NP_001039828.1| integrator complex subunit 9 [Bos taurus]. 74 5e-13
>ref|NP_776709.1| cleavage and polyadenylation specificity factor subunit 3 [Bos
taurus].
Length = 684
Score = 946 bits (2444), Expect = 0.0
Identities = 465/472 (98%), Positives = 466/472 (98%)
Frame = +3
Query: 120 MSAIPAEESDQLLIRPLGAGQEVGRSCIILEFKGRKIMLDCGIHPGLEGMDALPYIDLID 299
MSAIPAEESDQLLIRPLGAGQEVGRSCIILEFKGRKIMLDCGIHPGLEGMDALPYIDLID
Sbjct: 1 MSAIPAEESDQLLIRPLGAGQEVGRSCIILEFKGRKIMLDCGIHPGLEGMDALPYIDLID 60
Query: 300 PAEIDLLLISHFHLDHCGALPWFLQKTSFKGRTFMTHATKAIYRWLLSDYVKVSNISADD 479
PAEIDLLLISHFHLDHCGALPWFLQKTSFKGRTFMTHATKAIYRWLLSDYVKVSNISADD
Sbjct: 61 PAEIDLLLISHFHLDHCGALPWFLQKTSFKGRTFMTHATKAIYRWLLSDYVKVSNISADD 120
Query: 480 MLYTETDLEESMDKIETINFHEVKEVAGIKFWCYHAGHVLGAAMFMIEIAGVKLLYTGDF 659
MLYTETDLEESMDKIETINFHEVKEVAGIKFWCYHAGHVLGAAMFMIEIAGVKLLYTGDF
Sbjct: 121 MLYTETDLEESMDKIETINFHEVKEVAGIKFWCYHAGHVLGAAMFMIEIAGVKLLYTGDF 180
Query: 660 SRQEDRHLMAAEIPNIKPDILIIESTYGTHIHEKREEREARFCNTVHDIVNRGGRGLIPV 839
SRQEDRHLMAAEIPNIKPDILIIESTYGTHIHEKREEREARFCNTVHDIVNRGGRGLIPV
Sbjct: 181 SRQEDRHLMAAEIPNIKPDILIIESTYGTHIHEKREEREARFCNTVHDIVNRGGRGLIPV 240
Query: 840 FALGRAQELLLILDEYWQNHPELHDIPIYYASSLAKKCMAVYQTYVNAMNDKIRKQININ 1019
FALGRAQELLLILDEYWQNHPELHDIPIYYASSLAKKCMAVYQTYVNAMNDKIRKQININ
Sbjct: 241 FALGRAQELLLILDEYWQNHPELHDIPIYYASSLAKKCMAVYQTYVNAMNDKIRKQININ 300
Query: 1020 NPFVFKHISNLKSMDHFDDIGPSVVMASPGMMQSGLSRELFESWCTDKRNGVIIAGYCVE 1199
NPFVFKHISNLKSMDHFDDIGPSVVMASPGMMQSGLSRELFESWCTDKRNGVIIAGYCVE
Sbjct: 301 NPFVFKHISNLKSMDHFDDIGPSVVMASPGMMQSGLSRELFESWCTDKRNGVIIAGYCVE 360
Query: 1200 GTLAKHIMSEPEEITTMSGQKLPLKMSVDYISFSAHTDYQQTSEFIRALKPPHVILVHGE 1379
GTLAKHIMSEPEEITTMSGQKLPLKMSVDYISFSAHTDYQQTSEFIRALKPPHVILVHGE
Sbjct: 361 GTLAKHIMSEPEEITTMSGQKLPLKMSVDYISFSAHTDYQQTSEFIRALKPPHVILVHGE 420
Query: 1380 QNEMARLKAALIREYEDXDEVHIEVHNPRNTEAVTLNFRGEKLAKLQKLTGD 1535
QNEMARLKAALIREYED DEVHIEVHNPRNTEAVTLNFRGEKLAK+ D
Sbjct: 421 QNEMARLKAALIREYEDNDEVHIEVHNPRNTEAVTLNFRGEKLAKVMGFLAD 472
>ref|NP_001094578.1| integrator complex subunit 11 [Bos taurus].
Length = 599
Score = 335 bits (859), Expect = 7e-92
Identities = 181/455 (39%), Positives = 269/455 (59%), Gaps = 9/455 (1%)
Frame = +3
Query: 150 QLLIRPLGAGQEVGRSCIILEFKGRKIMLDCGIHPGLEGMDALPYIDLIDPAE-----ID 314
++ + PLGAGQ+VGRSCI++ G+ +MLDCG+H G P I + +D
Sbjct: 3 EIRVTPLGAGQDVGRSCILVSIAGKNVMLDCGMHMGFSDDRRFPDFSYITRSGRLTDFLD 62
Query: 315 LLLISHFHLDHCGALPWFLQKTSFKGRTFMTHATKAIYRWLLSDYVKVS-NISADDMLYT 491
++ISHFHLDHCGALP+F + + G +MT T+AI LL DY K++ + + +T
Sbjct: 63 CVIISHFHLDHCGALPYFSEMVGYDGPIYMTQPTQAICPILLEDYRKIAVDKKGEANFFT 122
Query: 492 ETDLEESMDKIETINFHEVKEVAG-IKFWCYHAGHVLGAAMFMIEIAGVKLLYTGDFSRQ 668
+++ M K+ ++ H+ +V ++ Y+AGHVLGAAMF I++ ++YTGD++
Sbjct: 123 SQMIKDCMKKVVAVHLHQTVQVDDELEIKAYYAGHVLGAAMFQIKVGSESVVYTGDYNMT 182
Query: 669 EDRHLMAAEIPNIKPDILIIESTYGTHIHEKREEREARFCNTVHDIVNRGGRGLIPVFAL 848
DRHL AA I +P +LI ESTY T I + + RE F VH+ V RGG+ LIPVFAL
Sbjct: 183 PDRHLGAAWIDKCRPSLLITESTYATTIRDSKRCRERDFLKKVHETVERGGKVLIPVFAL 242
Query: 849 GRAQELLLILDEYWQNHPELHDIPIYYASSLAKKCMAVYQTYVNAMNDKIRKQININNPF 1028
GRAQEL ++L+ +W+ PIY+++ L +K Y+ ++ N KIRK N F
Sbjct: 243 GRAQELCILLETFWERMD--LKAPIYFSTGLTEKANHYYKLFIPWTNQKIRKTFVQRNMF 300
Query: 1029 VFKHISNLKSMDH--FDDIGPSVVMASPGMMQSGLSRELFESWCTDKRNGVIIAGYCVEG 1202
FKHI K+ D D GP VV A+PGM+ +G S ++F W +++N VI+ GYCV+G
Sbjct: 301 EFKHI---KAFDRAFADSPGPMVVFATPGMLHAGQSLQIFRKWAGNEKNMVIMPGYCVQG 357
Query: 1203 TLAKHIMSEPEEITTMSGQKLPLKMSVDYISFSAHTDYQQTSEFIRALKPPHVILVHGEQ 1382
T+ I+S ++ Q L +KM V+Y+SFSAH D + + + +P +V+LVHGE
Sbjct: 358 TVGHKILSGQRKLEMEGRQVLEVKMQVEYMSFSAHADAKGIMQLVGQAEPENVLLVHGEA 417
Query: 1383 NEMARLKAALIREYEDXDEVHIEVHNPRNTEAVTL 1487
+M LK + +E+ + + P N E VTL
Sbjct: 418 KKMEFLKQKIEQEF------RVNCYMPANGETVTL 446
>ref|XP_002694180.1| PREDICTED: cleavage and polyadenylation specific factor 3-like [Bos
taurus].
Length = 599
Score = 335 bits (858), Expect = 9e-92
Identities = 181/455 (39%), Positives = 269/455 (59%), Gaps = 9/455 (1%)
Frame = +3
Query: 150 QLLIRPLGAGQEVGRSCIILEFKGRKIMLDCGIHPGLEGMDALPYIDLIDPAE-----ID 314
++ + PLGAGQ+VGRSCI++ G+ +MLDCG+H G P I + +D
Sbjct: 3 EIRVTPLGAGQDVGRSCILVSIAGKNVMLDCGMHMGFSDDRRFPDFSYITRSGRLTDFLD 62
Query: 315 LLLISHFHLDHCGALPWFLQKTSFKGRTFMTHATKAIYRWLLSDYVKVS-NISADDMLYT 491
++ISHFHLDHCGALP+F + + G +MT T+AI LL DY K++ + + +T
Sbjct: 63 CVIISHFHLDHCGALPYFSEMVGYDGPIYMTQPTQAICPILLEDYRKIAVDKXGEANFFT 122
Query: 492 ETDLEESMDKIETINFHEVKEVAG-IKFWCYHAGHVLGAAMFMIEIAGVKLLYTGDFSRQ 668
+++ M K+ ++ H+ +V ++ Y+AGHVLGAAMF I++ ++YTGD++
Sbjct: 123 SQMIKDCMKKVVAVHLHQTVQVDDELEIKAYYAGHVLGAAMFQIKVGSESVVYTGDYNMT 182
Query: 669 EDRHLMAAEIPNIKPDILIIESTYGTHIHEKREEREARFCNTVHDIVNRGGRGLIPVFAL 848
DRHL AA I +P +LI ESTY T I + + RE F VH+ V RGG+ LIPVFAL
Sbjct: 183 PDRHLGAAWIDKCRPSLLITESTYATTIRDSKRCRERDFLKKVHETVERGGKVLIPVFAL 242
Query: 849 GRAQELLLILDEYWQNHPELHDIPIYYASSLAKKCMAVYQTYVNAMNDKIRKQININNPF 1028
GRAQEL ++L+ +W+ PIY+++ L +K Y+ ++ N KIRK N F
Sbjct: 243 GRAQELCILLETFWERMD--LKAPIYFSTGLTEKANHYYKLFIPWTNQKIRKTFVQRNMF 300
Query: 1029 VFKHISNLKSMDH--FDDIGPSVVMASPGMMQSGLSRELFESWCTDKRNGVIIAGYCVEG 1202
FKHI K+ D D GP VV A+PGM+ +G S ++F W +++N VI+ GYCV+G
Sbjct: 301 EFKHI---KAFDRAFADSPGPMVVFATPGMLHAGQSLQIFRKWAGNEKNMVIMPGYCVQG 357
Query: 1203 TLAKHIMSEPEEITTMSGQKLPLKMSVDYISFSAHTDYQQTSEFIRALKPPHVILVHGEQ 1382
T+ I+S ++ Q L +KM V+Y+SFSAH D + + + +P +V+LVHGE
Sbjct: 358 TVGHKILSGQRKLEMEGRQVLEVKMQVEYMSFSAHADAKGIMQLVGQAEPENVLLVHGEA 417
Query: 1383 NEMARLKAALIREYEDXDEVHIEVHNPRNTEAVTL 1487
+M LK + +E+ + + P N E VTL
Sbjct: 418 KKMEFLKQKIEQEF------RVNCYMPANGETVTL 446
>ref|XP_883112.3| PREDICTED: cleavage and polyadenylation specific factor 3-like
isoform 6 [Bos taurus].
Length = 572
Score = 314 bits (805), Expect = 1e-85
Identities = 174/454 (38%), Positives = 255/454 (56%), Gaps = 8/454 (1%)
Frame = +3
Query: 150 QLLIRPLGAGQEVGRSCIILEFKGRKIMLDCGIHPGLEGMDALPYIDLIDPAE-----ID 314
++ + PLGAGQ+VGRSCI++ G+ +MLDCG+H G P I + +D
Sbjct: 3 EIRVTPLGAGQDVGRSCILVSIAGKNVMLDCGMHMGFSDDRRFPDFSYITRSGRLTDFLD 62
Query: 315 LLLISHFHLDHCGALPWFLQKTSFKGRTFMTHATKAIYRWLLSDYVKVSNISADDMLYTE 494
++ISHFHLDHCGALP+F + + G +MT T I
Sbjct: 63 CVIISHFHLDHCGALPYFSEMVGYDGPIYMTQPTXMI----------------------- 99
Query: 495 TDLEESMDKIETINFHEVKEVAG-IKFWCYHAGHVLGAAMFMIEIAGVKLLYTGDFSRQE 671
++ M K+ ++ H+ +V ++ Y+AGHVLGAAMF I++ ++YTGD++
Sbjct: 100 ---KDCMKKVVAVHLHQTVQVDDELEIKAYYAGHVLGAAMFQIKVGSESVVYTGDYNMTP 156
Query: 672 DRHLMAAEIPNIKPDILIIESTYGTHIHEKREEREARFCNTVHDIVNRGGRGLIPVFALG 851
DRHL AA I +P +LI ESTY T I + + RE F VH+ V RGG+ LIPVFALG
Sbjct: 157 DRHLGAAWIDKCRPSLLITESTYATTIRDSKRCRERDFLKKVHETVERGGKVLIPVFALG 216
Query: 852 RAQELLLILDEYWQNHPELHDIPIYYASSLAKKCMAVYQTYVNAMNDKIRKQININNPFV 1031
RAQEL ++L+ +W+ PIY+++ L +K Y+ ++ N KIRK N F
Sbjct: 217 RAQELCILLETFWERMD--LKAPIYFSTGLTEKANHYYKLFIPWTNQKIRKTFVQRNMFE 274
Query: 1032 FKHISNLKSMDH--FDDIGPSVVMASPGMMQSGLSRELFESWCTDKRNGVIIAGYCVEGT 1205
FKHI K+ D D GP VV A+PGM+ +G S ++F W +++N VI+ GYCV+GT
Sbjct: 275 FKHI---KAFDRAFADSPGPMVVFATPGMLHAGQSLQIFRKWAGNEKNMVIMPGYCVQGT 331
Query: 1206 LAKHIMSEPEEITTMSGQKLPLKMSVDYISFSAHTDYQQTSEFIRALKPPHVILVHGEQN 1385
+ I+S ++ Q L +KM V+Y+SFSAH D + + + +P +V+LVHGE
Sbjct: 332 VGHKILSGQRKLEMEGRQVLEVKMQVEYMSFSAHADAKGIMQLVGQAEPENVLLVHGEAK 391
Query: 1386 EMARLKAALIREYEDXDEVHIEVHNPRNTEAVTL 1487
+M LK + +E+ + + P N E VTL
Sbjct: 392 KMEFLKQKIEQEF------RVNCYMPANGETVTL 419
>ref|NP_787002.1| cleavage and polyadenylation specificity factor subunit 2 [Bos
taurus].
Length = 782
Score = 140 bits (354), Expect = 2e-33
Identities = 99/375 (26%), Positives = 180/375 (48%), Gaps = 15/375 (4%)
Frame = +3
Query: 168 LGAGQEVGRSCIILEFKGRKIMLDCGIHPGLEGMDALPYIDLIDPA-----EIDLLLISH 332
L QE C +L+ + +LDCG D +D+ID +ID +L+SH
Sbjct: 10 LSGVQEESALCYLLQVDEFRFLLDCG-------WDEHFSMDIIDSLRKHVHQIDAVLLSH 62
Query: 333 FHLDHCGALPWFLQKTSFKGRTFMTHATKAIYRWLLSDYVKVSNISADDMLYTETDLEES 512
H GALP+ + K + T + + + D + + + D L+T D++ +
Sbjct: 63 PDPLHLGALPYAVGKLGLNCAIYATIPVYKMGQMFMYDLYQSRHNTEDFTLFTLDDVDAA 122
Query: 513 MDKIETINFHEVKEVAG----IKFWCYHAGHVLGAAMFMIEIAGVK-LLYTGDFSRQEDR 677
DKI+ + F ++ + G + AGH++G ++ I G + ++Y DF+ + +
Sbjct: 123 FDKIQQLKFSQIVNLKGKGHGLSITPLPAGHMIGGTIWKIVKDGEEEIVYAVDFNHKREI 182
Query: 678 HLMAAEIPNI-KPDILIIESTYGTHIHEKREEREARFCNTVHDIVNRGGRGLIPVFALGR 854
HL + + +P +LI +S T++ +R++R+ + V + + G LI V GR
Sbjct: 183 HLNGCSLEMLSRPSLLITDSFNATYVQPRRKQRDEQLLTNVLETLRGDGNVLIAVDTAGR 242
Query: 855 AQELLLILDEYWQNHPE-LHDIPIYYASSLAKKCMAVYQTYVNAMNDKIRK--QININNP 1025
EL +LD+ W+ L + ++++ + ++ V M+DK+ + + NNP
Sbjct: 243 VLELAQLLDQIWRTKDAGLGVYSLALLNNVSYNVVEFSKSQVEWMSDKLMRCFEDKRNNP 302
Query: 1026 FVFKHISNLKSMDHFDDI-GPSVVMASPGMMQSGLSRELFESWCTDKRNGVIIAGYCVEG 1202
F F+H+S + + P VV+AS ++ G SR+LF WC D +N +I+ G
Sbjct: 303 FQFRHLSLCHGLSDLARVPSPKVVLASQPDLECGFSRDLFIQWCQDPKNSIILTYRTTPG 362
Query: 1203 TLAKHIMSEPEEITT 1247
TLA+ ++ P E T
Sbjct: 363 TLARFLIDNPSEKVT 377
>ref|NP_001039828.1| integrator complex subunit 9 [Bos taurus].
Length = 658
Score = 73.6 bits (179), Expect = 5e-13
Identities = 99/476 (20%), Positives = 167/476 (35%), Gaps = 87/476 (18%)
Frame = +3
Query: 198 CIILEFKGRKIMLDCGIH---------------------PGLEGMDA------------- 275
C +L+FK IMLDCG+ PG D
Sbjct: 14 CNVLKFKSTTIMLDCGLDMTSTLNFLPLPLVQSPRLSNLPGWSLKDGNAFLDKELKECSG 73
Query: 276 -----------LPYIDLIDPAEIDLLLISHFHLDHCGALPWFLQKTSFKGRTFMTHATKA 422
LP +LID + +D++LIS++H ALP+ + T F G + T T
Sbjct: 74 HVFVDSVPEFCLPETELIDLSTVDVILISNYHC--MMALPYITEHTGFTGTVYATEPTVQ 131
Query: 423 IYRWLLSDYVK-----------------------------VSNISADDMLYTETDLEESM 515
I R L+ + V +S YT ++ ++
Sbjct: 132 IGRLLMEELVNFIERVPKAQSASLWKNKDIQRLLPSPLKDAVEVSTWRRCYTMQEVNSAL 191
Query: 516 DKIETINFHEVKEVAG-IKFWCYHAGHVLGAAMFMIEIAGVKLLYTGDFSRQEDRHLMAA 692
KI+ + + + E+ G ++ +G+ LG++ ++I+ K+ Y S
Sbjct: 192 SKIQLVGYSQKIELFGAVQVTPLSSGYALGSSNWIIQSHYEKVSYVSGSSLLTTHPQPMD 251
Query: 693 EIPNIKPDILIIESTYGTHIHEKR-EEREARFCNTVHDIVNRGGRGLIPVFALGRAQELL 869
+ D+LI+ T I + FC+ + V GG L+P + G +LL
Sbjct: 252 QASLKNSDVLILTGL--TQIPTANPDSMVGEFCSNLALTVRNGGNVLVPCYPSGVIYDLL 309
Query: 870 LILDEYWQNHPELHDIPIYYASSLAKKCMAVYQTYVNAM-NDKIRKQININNPFVFKHIS 1046
L +Y + L IP Y+ S +A + Q + + ++K K PF +
Sbjct: 310 ECLYQYIDS-AGLSSIPFYFISPVANSSLEFSQIFAEWLCHNKQTKVYLPEPPFPHAELI 368
Query: 1047 NLKSMDHFDDI---------GPSVVMASPGMMQSGLSRELFESWCTDKRNGVIIAGYCVE 1199
+ H+ I P VV ++ G E W N V
Sbjct: 369 QTNKLKHYPSIHGDFSNDFRQPCVVFTGHPSLRFGDVVHFMELWGKSSLNTV-------- 420
Query: 1200 GTLAKHIMSEPE-EITTMSGQKLPLKMSVDYISFSAHTDYQQTSEFIRALKPPHVI 1364
I +EP+ PL M Y ++ Q S+ ++ ++P HV+
Sbjct: 421 ------IFTEPDFSYLEALAPYQPLAMKCIYCPIDTRLNFIQVSKLLKEVQPLHVV 470
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 59,073,073
Number of extensions: 1557665
Number of successful extensions: 4461
Number of sequences better than 1.0e-05: 6
Number of HSP's gapped: 4440
Number of HSP's successfully gapped: 8
Length of query: 520
Length of database: 17,681,374
Length adjustment: 107
Effective length of query: 413
Effective length of database: 14,140,958
Effective search space: 5840215654
Effective search space used: 5840215654
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003876
(1560 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_856094.1| PREDICTED: similar to Cleavage and polyadenylat... 946 0.0
Alignment gi|XP_540075.2| PREDICTED: similar to Cleavage and polyadenylat... 946 0.0
Alignment gi|XP_856134.1| PREDICTED: similar to Cleavage and polyadenylat... 825 0.0
Alignment gi|XP_536711.2| PREDICTED: similar to related to CPSF subunits ... 337 1e-92
Alignment gi|XP_856205.1| PREDICTED: similar to related to CPSF subunits ... 306 4e-83
Alignment gi|XP_856157.1| PREDICTED: similar to related to CPSF subunits ... 278 8e-75
Alignment gi|XP_856079.1| PREDICTED: similar to related to CPSF subunits ... 236 3e-62
Alignment gi|XP_856041.1| PREDICTED: similar to related to CPSF subunits ... 193 2e-49
Alignment gi|XP_856414.1| PREDICTED: similar to cleavage and polyadenylat... 140 3e-33
Alignment gi|XP_848582.1| PREDICTED: similar to cleavage and polyadenylat... 140 3e-33
>ref|XP_856094.1| PREDICTED: similar to Cleavage and polyadenylation specificity
factor, 73 kDa subunit (CPSF 73 kDa subunit) isoform 2
[Canis familiaris].
Length = 580
Score = 946 bits (2444), Expect = 0.0
Identities = 465/472 (98%), Positives = 466/472 (98%)
Frame = +3
Query: 120 MSAIPAEESDQLLIRPLGAGQEVGRSCIILEFKGRKIMLDCGIHPGLEGMDALPYIDLID 299
MSAIPAEESDQLLIRPLGAGQEVGRSCIILEFKGRKIMLDCGIHPGLEGMDALPYIDLID
Sbjct: 1 MSAIPAEESDQLLIRPLGAGQEVGRSCIILEFKGRKIMLDCGIHPGLEGMDALPYIDLID 60
Query: 300 PAEIDLLLISHFHLDHCGALPWFLQKTSFKGRTFMTHATKAIYRWLLSDYVKVSNISADD 479
PAEIDLLLISHFHLDHCGALPWFLQKTSFKGRTFMTHATKAIYRWLLSDYVKVSNISADD
Sbjct: 61 PAEIDLLLISHFHLDHCGALPWFLQKTSFKGRTFMTHATKAIYRWLLSDYVKVSNISADD 120
Query: 480 MLYTETDLEESMDKIETINFHEVKEVAGIKFWCYHAGHVLGAAMFMIEIAGVKLLYTGDF 659
MLYTETDLEESMDKIETINFHEVKEVAGIKFWCYHAGHVLGAAMFMIEIAGVKLLYTGDF
Sbjct: 121 MLYTETDLEESMDKIETINFHEVKEVAGIKFWCYHAGHVLGAAMFMIEIAGVKLLYTGDF 180
Query: 660 SRQEDRHLMAAEIPNIKPDILIIESTYGTHIHEKREEREARFCNTVHDIVNRGGRGLIPV 839
SRQEDRHLMAAEIPNIKPDILIIESTYGTHIHEKREEREARFCNTVHDIVNRGGRGLIPV
Sbjct: 181 SRQEDRHLMAAEIPNIKPDILIIESTYGTHIHEKREEREARFCNTVHDIVNRGGRGLIPV 240
Query: 840 FALGRAQELLLILDEYWQNHPELHDIPIYYASSLAKKCMAVYQTYVNAMNDKIRKQININ 1019
FALGRAQELLLILDEYWQNHPELHDIPIYYASSLAKKCMAVYQTYVNAMNDKIRKQININ
Sbjct: 241 FALGRAQELLLILDEYWQNHPELHDIPIYYASSLAKKCMAVYQTYVNAMNDKIRKQININ 300
Query: 1020 NPFVFKHISNLKSMDHFDDIGPSVVMASPGMMQSGLSRELFESWCTDKRNGVIIAGYCVE 1199
NPFVFKHISNLKSMDHFDDIGPSVVMASPGMMQSGLSRELFESWCTDKRNGVIIAGYCVE
Sbjct: 301 NPFVFKHISNLKSMDHFDDIGPSVVMASPGMMQSGLSRELFESWCTDKRNGVIIAGYCVE 360
Query: 1200 GTLAKHIMSEPEEITTMSGQKLPLKMSVDYISFSAHTDYQQTSEFIRALKPPHVILVHGE 1379
GTLAKHIMSEPEEITTMSGQKLPLKMSVDYISFSAHTDYQQTSEFIRALKPPHVILVHGE
Sbjct: 361 GTLAKHIMSEPEEITTMSGQKLPLKMSVDYISFSAHTDYQQTSEFIRALKPPHVILVHGE 420
Query: 1380 QNEMARLKAALIREYEDXDEVHIEVHNPRNTEAVTLNFRGEKLAKLQKLTGD 1535
QNEMARLKAALIREYED DEVHIEVHNPRNTEAVTLNFRGEKLAK+ D
Sbjct: 421 QNEMARLKAALIREYEDNDEVHIEVHNPRNTEAVTLNFRGEKLAKVMGFLAD 472
>ref|XP_540075.2| PREDICTED: similar to Cleavage and polyadenylation specificity
factor, 73 kDa subunit (CPSF 73 kDa subunit) isoform 1
[Canis familiaris].
Length = 684
Score = 946 bits (2444), Expect = 0.0
Identities = 465/472 (98%), Positives = 466/472 (98%)
Frame = +3
Query: 120 MSAIPAEESDQLLIRPLGAGQEVGRSCIILEFKGRKIMLDCGIHPGLEGMDALPYIDLID 299
MSAIPAEESDQLLIRPLGAGQEVGRSCIILEFKGRKIMLDCGIHPGLEGMDALPYIDLID
Sbjct: 1 MSAIPAEESDQLLIRPLGAGQEVGRSCIILEFKGRKIMLDCGIHPGLEGMDALPYIDLID 60
Query: 300 PAEIDLLLISHFHLDHCGALPWFLQKTSFKGRTFMTHATKAIYRWLLSDYVKVSNISADD 479
PAEIDLLLISHFHLDHCGALPWFLQKTSFKGRTFMTHATKAIYRWLLSDYVKVSNISADD
Sbjct: 61 PAEIDLLLISHFHLDHCGALPWFLQKTSFKGRTFMTHATKAIYRWLLSDYVKVSNISADD 120
Query: 480 MLYTETDLEESMDKIETINFHEVKEVAGIKFWCYHAGHVLGAAMFMIEIAGVKLLYTGDF 659
MLYTETDLEESMDKIETINFHEVKEVAGIKFWCYHAGHVLGAAMFMIEIAGVKLLYTGDF
Sbjct: 121 MLYTETDLEESMDKIETINFHEVKEVAGIKFWCYHAGHVLGAAMFMIEIAGVKLLYTGDF 180
Query: 660 SRQEDRHLMAAEIPNIKPDILIIESTYGTHIHEKREEREARFCNTVHDIVNRGGRGLIPV 839
SRQEDRHLMAAEIPNIKPDILIIESTYGTHIHEKREEREARFCNTVHDIVNRGGRGLIPV
Sbjct: 181 SRQEDRHLMAAEIPNIKPDILIIESTYGTHIHEKREEREARFCNTVHDIVNRGGRGLIPV 240
Query: 840 FALGRAQELLLILDEYWQNHPELHDIPIYYASSLAKKCMAVYQTYVNAMNDKIRKQININ 1019
FALGRAQELLLILDEYWQNHPELHDIPIYYASSLAKKCMAVYQTYVNAMNDKIRKQININ
Sbjct: 241 FALGRAQELLLILDEYWQNHPELHDIPIYYASSLAKKCMAVYQTYVNAMNDKIRKQININ 300
Query: 1020 NPFVFKHISNLKSMDHFDDIGPSVVMASPGMMQSGLSRELFESWCTDKRNGVIIAGYCVE 1199
NPFVFKHISNLKSMDHFDDIGPSVVMASPGMMQSGLSRELFESWCTDKRNGVIIAGYCVE
Sbjct: 301 NPFVFKHISNLKSMDHFDDIGPSVVMASPGMMQSGLSRELFESWCTDKRNGVIIAGYCVE 360
Query: 1200 GTLAKHIMSEPEEITTMSGQKLPLKMSVDYISFSAHTDYQQTSEFIRALKPPHVILVHGE 1379
GTLAKHIMSEPEEITTMSGQKLPLKMSVDYISFSAHTDYQQTSEFIRALKPPHVILVHGE
Sbjct: 361 GTLAKHIMSEPEEITTMSGQKLPLKMSVDYISFSAHTDYQQTSEFIRALKPPHVILVHGE 420
Query: 1380 QNEMARLKAALIREYEDXDEVHIEVHNPRNTEAVTLNFRGEKLAKLQKLTGD 1535
QNEMARLKAALIREYED DEVHIEVHNPRNTEAVTLNFRGEKLAK+ D
Sbjct: 421 QNEMARLKAALIREYEDNDEVHIEVHNPRNTEAVTLNFRGEKLAKVMGFLAD 472
>ref|XP_856134.1| PREDICTED: similar to Cleavage and polyadenylation specificity
factor, 73 kDa subunit (CPSF 73 kDa subunit) isoform 3
[Canis familiaris].
Length = 635
Score = 825 bits (2130), Expect = 0.0
Identities = 416/472 (88%), Positives = 417/472 (88%)
Frame = +3
Query: 120 MSAIPAEESDQLLIRPLGAGQEVGRSCIILEFKGRKIMLDCGIHPGLEGMDALPYIDLID 299
MSAIPAEESDQLLIRPLGAGQEVGRSCIILEFKGRKIMLDCGIHPGLEGMDALPYIDLID
Sbjct: 1 MSAIPAEESDQLLIRPLGAGQEVGRSCIILEFKGRKIMLDCGIHPGLEGMDALPYIDLID 60
Query: 300 PAEIDLLLISHFHLDHCGALPWFLQKTSFKGRTFMTHATKAIYRWLLSDYVKVSNISADD 479
PAEIDLLLISHFHLDHCGALPWFLQKTSFKGRTFMTHATKAIYRWLLSDYVKVSNISADD
Sbjct: 61 PAEIDLLLISHFHLDHCGALPWFLQKTSFKGRTFMTHATKAIYRWLLSDYVKVSNISADD 120
Query: 480 MLYTETDLEESMDKIETINFHEVKEVAGIKFWCYHAGHVLGAAMFMIEIAGVKLLYTGDF 659
MLYTETDLEESMDKIETINFHEVKEVAGIKFWCYHAGHVLGAAMFMIEIAGVKLLYTGDF
Sbjct: 121 MLYTETDLEESMDKIETINFHEVKEVAGIKFWCYHAGHVLGAAMFMIEIAGVKLLYTGDF 180
Query: 660 SRQEDRHLMAAEIPNIKPDILIIESTYGTHIHEKREEREARFCNTVHDIVNRGGRGLIPV 839
SRQEDRHLMAAEIPNIKPDILIIESTYGTHIHEKREEREARFCNTVHDIVNRGGRGLIPV
Sbjct: 181 SRQEDRHLMAAEIPNIKPDILIIESTYGTHIHEKREEREARFCNTVHDIVNRGGRGLIPV 240
Query: 840 FALGRAQELLLILDEYWQNHPELHDIPIYYASSLAKKCMAVYQTYVNAMNDKIRKQININ 1019
FALGRAQELLLILDEYWQNHPELHDIPIYYASSLAKKCMAVYQTYVNAMNDKIRKQININ
Sbjct: 241 FALGRAQELLLILDEYWQNHPELHDIPIYYASSLAKKCMAVYQTYVNAMNDKIRKQININ 300
Query: 1020 NPFVFKHISNLKSMDHFDDIGPSVVMASPGMMQSGLSRELFESWCTDKRNGVIIAGYCVE 1199
NPFVFKHISNLKSMDHFDDIGPSVVMASPGMMQSGLSRELFESWCTDKRNGVIIAGYCVE
Sbjct: 301 NPFVFKHISNLKSMDHFDDIGPSVVMASPGMMQSGLSRELFESWCTDKRNGVIIAGYCVE 360
Query: 1200 GTLAKHIMSEPEEITTMSGQKLPLKMSVDYISFSAHTDYQQTSEFIRALKPPHVILVHGE 1379
GTLAK ILVHGE
Sbjct: 361 GTLAK-------------------------------------------------ILVHGE 371
Query: 1380 QNEMARLKAALIREYEDXDEVHIEVHNPRNTEAVTLNFRGEKLAKLQKLTGD 1535
QNEMARLKAALIREYED DEVHIEVHNPRNTEAVTLNFRGEKLAK+ D
Sbjct: 372 QNEMARLKAALIREYEDNDEVHIEVHNPRNTEAVTLNFRGEKLAKVMGFLAD 423
>ref|XP_536711.2| PREDICTED: similar to related to CPSF subunits 68 kDa isoform 1
isoform 1 [Canis familiaris].
Length = 600
Score = 337 bits (865), Expect = 1e-92
Identities = 182/455 (40%), Positives = 270/455 (59%), Gaps = 9/455 (1%)
Frame = +3
Query: 150 QLLIRPLGAGQEVGRSCIILEFKGRKIMLDCGIHPGLEGMDALPYIDLIDPAE-----ID 314
++ + PLGAGQ+VGRSCI++ G+ +MLDCG+H G P I +D
Sbjct: 3 EIRVTPLGAGQDVGRSCILVSIAGKNVMLDCGMHMGFNDDRRFPDFSYITRNGRLTDFLD 62
Query: 315 LLLISHFHLDHCGALPWFLQKTSFKGRTFMTHATKAIYRWLLSDYVKVS-NISADDMLYT 491
++ISHFHLDHCGALP+F + + G +MTH T+AI LL DY K++ + + +T
Sbjct: 63 CVIISHFHLDHCGALPYFSEMVGYDGPIYMTHPTQAICPILLEDYRKIAVDKKGEANFFT 122
Query: 492 ETDLEESMDKIETINFHEVKEVAG-IKFWCYHAGHVLGAAMFMIEIAGVKLLYTGDFSRQ 668
+++ M K+ ++ H+ +V ++ Y+AGHVLGAAMF I++ ++YTGD++
Sbjct: 123 SQMIKDCMKKVVAVHLHQTVQVDDELEIKAYYAGHVLGAAMFQIKVGSESVVYTGDYNMT 182
Query: 669 EDRHLMAAEIPNIKPDILIIESTYGTHIHEKREEREARFCNTVHDIVNRGGRGLIPVFAL 848
DRHL AA I +P++LI ESTY T I + + RE F VH+ V RGG+ LIPVFAL
Sbjct: 183 PDRHLGAAWIDKCRPNLLITESTYATTIRDSKRCRERDFLKKVHEAVERGGKVLIPVFAL 242
Query: 849 GRAQELLLILDEYWQNHPELHDIPIYYASSLAKKCMAVYQTYVNAMNDKIRKQININNPF 1028
GRAQEL ++L+ +W+ PIY+++ L +K Y+ ++ N KIRK N F
Sbjct: 243 GRAQELCILLETFWERMN--LKAPIYFSTGLTEKANHYYKLFITWTNQKIRKTFVQRNMF 300
Query: 1029 VFKHISNLKSMDH--FDDIGPSVVMASPGMMQSGLSRELFESWCTDKRNGVIIAGYCVEG 1202
FKHI K+ D D+ GP VV A+PGM+ +G S ++F W +++N VI+ GYCV+G
Sbjct: 301 EFKHI---KAFDRAFADNPGPMVVFATPGMLHAGQSLQIFRKWAGNEKNMVIMPGYCVQG 357
Query: 1203 TLAKHIMSEPEEITTMSGQKLPLKMSVDYISFSAHTDYQQTSEFIRALKPPHVILVHGEQ 1382
T+ I+S ++ Q L +KM V+Y+SFSAH D + + + +P V+LVHGE
Sbjct: 358 TVGHKILSGQRKLEMEGRQVLEVKMQVEYMSFSAHADAKGIMQLVGQAEPESVLLVHGEA 417
Query: 1383 NEMARLKAALIREYEDXDEVHIEVHNPRNTEAVTL 1487
+M LK + +E+ + + P N E VTL
Sbjct: 418 KKMEFLKQKIEQEF------RVNCYMPANGETVTL 446
>ref|XP_856205.1| PREDICTED: similar to related to CPSF subunits 68 kDa isoform 1
isoform 6 [Canis familiaris].
Length = 578
Score = 306 bits (784), Expect = 4e-83
Identities = 170/454 (37%), Positives = 255/454 (56%), Gaps = 8/454 (1%)
Frame = +3
Query: 150 QLLIRPLGAGQEVGRSCIILEFKGRKIMLDCGIHPGLEGMDALPYIDLIDPAE-----ID 314
++ + PLGAGQ+VGRSCI++ G+ +MLDCG+H G P I +D
Sbjct: 3 EIRVTPLGAGQDVGRSCILVSIAGKNVMLDCGMHMGFNDDRRFPDFSYITRNGRLTDFLD 62
Query: 315 LLLISHFHLDHCGALPWFLQKTSFKGRTFMTHATKAIYRWLLSDYVKVS-NISADDMLYT 491
++ISHFHLDHCGALP+F + + G +MTH T+AI LL DY K++ + + +T
Sbjct: 63 CVIISHFHLDHCGALPYFSEMVGYDGPIYMTHPTQAICPILLEDYRKIAVDKKGEANFFT 122
Query: 492 ETDLEESMDKIETINFHEVKEVAGIKFWCYHAGHVLGAAMFMIEIAGVKLLYTGDFSRQE 671
+++ M K+ ++ H+ + I++ ++YTGD++
Sbjct: 123 SQMIKDCMKKVVAVHLHQTVQ---------------------IKVGSESVVYTGDYNMTP 161
Query: 672 DRHLMAAEIPNIKPDILIIESTYGTHIHEKREEREARFCNTVHDIVNRGGRGLIPVFALG 851
DRHL AA I +P++LI ESTY T I + + RE F VH+ V RGG+ LIPVFALG
Sbjct: 162 DRHLGAAWIDKCRPNLLITESTYATTIRDSKRCRERDFLKKVHEAVERGGKVLIPVFALG 221
Query: 852 RAQELLLILDEYWQNHPELHDIPIYYASSLAKKCMAVYQTYVNAMNDKIRKQININNPFV 1031
RAQEL ++L+ +W+ PIY+++ L +K Y+ ++ N KIRK N F
Sbjct: 222 RAQELCILLETFWERMNL--KAPIYFSTGLTEKANHYYKLFITWTNQKIRKTFVQRNMFE 279
Query: 1032 FKHISNLKSMDHF--DDIGPSVVMASPGMMQSGLSRELFESWCTDKRNGVIIAGYCVEGT 1205
FKHI K+ D D+ GP VV A+PGM+ +G S ++F W +++N VI+ GYCV+GT
Sbjct: 280 FKHI---KAFDRAFADNPGPMVVFATPGMLHAGQSLQIFRKWAGNEKNMVIMPGYCVQGT 336
Query: 1206 LAKHIMSEPEEITTMSGQKLPLKMSVDYISFSAHTDYQQTSEFIRALKPPHVILVHGEQN 1385
+ I+S ++ Q L +KM V+Y+SFSAH D + + + +P V+LVHGE
Sbjct: 337 VGHKILSGQRKLEMEGRQVLEVKMQVEYMSFSAHADAKGIMQLVGQAEPESVLLVHGEAK 396
Query: 1386 EMARLKAALIREYEDXDEVHIEVHNPRNTEAVTL 1487
+M LK + +E+ + + P N E VTL
Sbjct: 397 KMEFLKQKIEQEF------RVNCYMPANGETVTL 424
>ref|XP_856157.1| PREDICTED: similar to related to CPSF subunits 68 kDa isoform 1
isoform 5 [Canis familiaris].
Length = 621
Score = 278 bits (712), Expect = 8e-75
Identities = 167/476 (35%), Positives = 255/476 (53%), Gaps = 30/476 (6%)
Frame = +3
Query: 150 QLLIRPLGAGQEVGRSCIILEFKGRKIMLDCGIHPGLEGMDALPYIDLIDPAE-----ID 314
++ + PLGAGQ+VGRSCI++ G+ +MLDCG+H G P I +D
Sbjct: 3 EIRVTPLGAGQDVGRSCILVSIAGKNVMLDCGMHMGFNDDRRFPDFSYITRNGRLTDFLD 62
Query: 315 LLLISHFHLDHCGALPWFLQKTSFKGRTFMTHATKAIYRWLLSDYVKVS-NISADDMLYT 491
++ISHFHLDHCGALP+F + + G +MTH T+AI LL DY K++ + + +T
Sbjct: 63 CVIISHFHLDHCGALPYFSEMVGYDGPIYMTHPTQAICPILLEDYRKIAVDKKGEANFFT 122
Query: 492 ETDLEESMDKIETINFHEVKEV---AGIKFWCY----------HAGHVLGAAMFMIEIAG 632
+++ M K+ ++ H+ +V CY H A + A
Sbjct: 123 SQMIKDCMKKVVAVHLHQTVQVRVPTDPISLCYCETTRSVPSAHQACGTSAVPQLCLSAS 182
Query: 633 VKLL---------YTGDFSRQEDRHLMAAEIPNIKPDILIIESTYGTHIHEKREEREARF 785
++ +T + + + ++A I +P++LI ESTY T I + + RE F
Sbjct: 183 ERVCPPGAAGGRDWTVRWPTRGEASWISAWIDKCRPNLLITESTYATTIRDSKRCRERDF 242
Query: 786 CNTVHDIVNRGGRGLIPVFALGRAQELLLILDEYWQNHPELHDIPIYYASSLAKKCMAVY 965
VH+ V RGG+ LIPVFALGRAQEL ++L+ +W+ PIY+++ L +K Y
Sbjct: 243 LKKVHEAVERGGKVLIPVFALGRAQELCILLETFWERMNL--KAPIYFSTGLTEKANHYY 300
Query: 966 QTYVNAMNDKIRKQININNPFVFKHISNLKSMDHF--DDIGPSVVMASPGMMQSGLSREL 1139
+ ++ N KIRK N F FKHI K+ D D+ GP VV A+PGM+ +G S ++
Sbjct: 301 KLFITWTNQKIRKTFVQRNMFEFKHI---KAFDRAFADNPGPMVVFATPGMLHAGQSLQI 357
Query: 1140 FESWCTDKRNGVIIAGYCVEGTLAKHIMSEPEEITTMSGQKLPLKMSVDYISFSAHTDYQ 1319
F W +++N VI+ GYCV+GT+ I+S ++ Q L +KM V+Y+SFSAH D +
Sbjct: 358 FRKWAGNEKNMVIMPGYCVQGTVGHKILSGQRKLEMEGRQVLEVKMQVEYMSFSAHADAK 417
Query: 1320 QTSEFIRALKPPHVILVHGEQNEMARLKAALIREYEDXDEVHIEVHNPRNTEAVTL 1487
+ + +P V+LVHGE +M LK + +E+ + + P N E VTL
Sbjct: 418 GIMQLVGQAEPESVLLVHGEAKKMEFLKQKIEQEF------RVNCYMPANGETVTL 467
>ref|XP_856079.1| PREDICTED: similar to related to CPSF subunits 68 kDa isoform 1
isoform 3 [Canis familiaris].
Length = 499
Score = 236 bits (603), Expect = 3e-62
Identities = 128/305 (41%), Positives = 184/305 (60%), Gaps = 2/305 (0%)
Frame = +3
Query: 579 YHAGHVLGAAMFMIEIAGVKLLYTGDFSRQEDRHLMAAEIPNIKPDILIIESTYGTHIHE 758
Y+AGHVLGAAMF I++ ++YTGD++ DRHL AA I +P++LI ESTY T I +
Sbjct: 52 YYAGHVLGAAMFQIKVGSESVVYTGDYNMTPDRHLGAAWIDKCRPNLLITESTYATTIRD 111
Query: 759 KREEREARFCNTVHDIVNRGGRGLIPVFALGRAQELLLILDEYWQNHPELHDIPIYYASS 938
+ RE F VH+ V RGG+ LIPVFALGRAQEL ++L+ +W+ PIY+++
Sbjct: 112 SKRCRERDFLKKVHEAVERGGKVLIPVFALGRAQELCILLETFWERMN--LKAPIYFSTG 169
Query: 939 LAKKCMAVYQTYVNAMNDKIRKQININNPFVFKHISNLKSMDH--FDDIGPSVVMASPGM 1112
L +K Y+ ++ N KIRK N F FKHI K+ D D+ GP VV A+PGM
Sbjct: 170 LTEKANHYYKLFITWTNQKIRKTFVQRNMFEFKHI---KAFDRAFADNPGPMVVFATPGM 226
Query: 1113 MQSGLSRELFESWCTDKRNGVIIAGYCVEGTLAKHIMSEPEEITTMSGQKLPLKMSVDYI 1292
+ +G S ++F W +++N VI+ GYCV+GT+ I+S ++ Q L +KM V+Y+
Sbjct: 227 LHAGQSLQIFRKWAGNEKNMVIMPGYCVQGTVGHKILSGQRKLEMEGRQVLEVKMQVEYM 286
Query: 1293 SFSAHTDYQQTSEFIRALKPPHVILVHGEQNEMARLKAALIREYEDXDEVHIEVHNPRNT 1472
SFSAH D + + + +P V+LVHGE +M LK + +E+ + + P N
Sbjct: 287 SFSAHADAKGIMQLVGQAEPESVLLVHGEAKKMEFLKQKIEQEF------RVNCYMPANG 340
Query: 1473 EAVTL 1487
E VTL
Sbjct: 341 ETVTL 345
Score = 53.5 bits (127), Expect = 5e-07
Identities = 25/61 (40%), Positives = 35/61 (57%)
Frame = +3
Query: 150 QLLIRPLGAGQEVGRSCIILEFKGRKIMLDCGIHPGLEGMDALPYIDLIDPAEIDLLLIS 329
++ + PLGAGQ+VGRSCI++ G+ +MLDCG+H G D+ D EI
Sbjct: 3 EIRVTPLGAGQDVGRSCILVSIAGKNVMLDCGMHMGFND-------DVDDELEIKAYYAG 55
Query: 330 H 332
H
Sbjct: 56 H 56
>ref|XP_856041.1| PREDICTED: similar to related to CPSF subunits 68 kDa isoform 1
isoform 2 [Canis familiaris].
Length = 435
Score = 193 bits (490), Expect(2) = 2e-49
Identities = 108/269 (40%), Positives = 157/269 (58%), Gaps = 2/269 (0%)
Frame = +3
Query: 687 AAEIPNIKPDILIIESTYGTHIHEKREEREARFCNTVHDIVNRGGRGLIPVFALGRAQEL 866
AA I +P++LI ESTY T I + + RE F VH+ V RGG+ LIPVFALGRAQEL
Sbjct: 24 AAWIDKCRPNLLITESTYATTIRDSKRCRERDFLKKVHEAVERGGKVLIPVFALGRAQEL 83
Query: 867 LLILDEYWQNHPELHDIPIYYASSLAKKCMAVYQTYVNAMNDKIRKQININNPFVFKHIS 1046
++L+ +W+ PIY+++ L +K Y+ ++ N KIRK N F FKHI
Sbjct: 84 CILLETFWERMNL--KAPIYFSTGLTEKANHYYKLFITWTNQKIRKTFVQRNMFEFKHI- 140
Query: 1047 NLKSMDHF--DDIGPSVVMASPGMMQSGLSRELFESWCTDKRNGVIIAGYCVEGTLAKHI 1220
K+ D D+ GP VV A+PGM+ +G S ++F W +++N VI+ GYCV+GT+ I
Sbjct: 141 --KAFDRAFADNPGPMVVFATPGMLHAGQSLQIFRKWAGNEKNMVIMPGYCVQGTVGHKI 198
Query: 1221 MSEPEEITTMSGQKLPLKMSVDYISFSAHTDYQQTSEFIRALKPPHVILVHGEQNEMARL 1400
+S ++ Q L +KM V+Y+SFSAH D + + + +P V+LVHGE +M L
Sbjct: 199 LSGQRKLEMEGRQVLEVKMQVEYMSFSAHADAKGIMQLVGQAEPESVLLVHGEAKKMEFL 258
Query: 1401 KAALIREYEDXDEVHIEVHNPRNTEAVTL 1487
K + +E+ + + P N E VTL
Sbjct: 259 KQKIEQEF------RVNCYMPANGETVTL 281
Score = 23.1 bits (48), Expect(2) = 2e-49
Identities = 11/27 (40%), Positives = 14/27 (51%)
Frame = +1
Query: 589 ATCWELPCS*LRSQASSFCIQVISQDK 669
ATCW PCS L+ S + + DK
Sbjct: 3 ATCWGQPCSRLKWAQSLWSTRAAWIDK 29
>ref|XP_856414.1| PREDICTED: similar to cleavage and polyadenylation specific factor 2
isoform 3 [Canis familiaris].
Length = 741
Score = 140 bits (354), Expect = 3e-33
Identities = 108/435 (24%), Positives = 202/435 (46%), Gaps = 31/435 (7%)
Frame = +3
Query: 168 LGAGQEVGRSCIILEFKGRKIMLDCGIHPGLEGMDALPYIDLIDPA-----EIDLLLISH 332
L QE C +L+ + +LDCG D +D+ID +ID +L+SH
Sbjct: 10 LSGVQEESALCYLLQVDEFRFLLDCG-------WDEHFSMDIIDSLRKHVHQIDAVLLSH 62
Query: 333 FHLDHCGALPWFLQKTSFKGRTFMTHATKAIYRWLLSDYVKVSNISADDMLYTETDLEES 512
H GALP+ + K + T + + + D + + + D L+T D++ +
Sbjct: 63 PDPLHLGALPYAVGKLGLNCAIYATIPVYKMGQMFMYDLYQSRHNTEDFTLFTLDDVDAA 122
Query: 513 MDKIETINFHEVKEVAG----IKFWCYHAGHVLGAAMFMIEIAGVK-LLYTGDFSRQEDR 677
DKI+ + F ++ + G + AGH++G ++ I G + ++Y DF+ + +
Sbjct: 123 FDKIQQLKFSQIVNLKGKGHGLSITPLPAGHMIGGTIWKIVKDGEEEIVYAVDFNHKREI 182
Query: 678 HLMAAEIPNI-KPDILIIESTYGTHIHEKREEREARFCNTVHDIVNRGGRGLIPVFALGR 854
HL + + +P +LI +S T++ +R++R+ + V + + G LI V GR
Sbjct: 183 HLNGCSLEMLSRPSLLITDSFNATYVQPRRKQRDEQLLTNVLETLRGDGNVLIAVDTAGR 242
Query: 855 AQELLLILDEYWQNHPE-LHDIPIYYASSLAKKCMAVYQTYVNAMNDKIRK--QININNP 1025
EL +LD+ W+ L + ++++ + ++ V M+DK+ + + NNP
Sbjct: 243 VLELAQLLDQIWRTKDAGLGVYSLALLNNVSYNVVEFSKSQVEWMSDKLMRCFEDKRNNP 302
Query: 1026 FVFKHISNLKSMDHFDDI-GPSVVMASPGMMQSGLSRELFESWCTDKRNGVIIAGYCVEG 1202
F F+H+S + + P VV+AS ++ G SR+LF WC D +N +I+ G
Sbjct: 303 FQFRHLSLCHGLSDLARVPSPKVVLASQPDLECGFSRDLFIQWCQDPKNSIILTYRTTPG 362
Query: 1203 TLAKHIMSEPEEITT---------MSGQKLPLKMSVDYISFSAHTDYQQTSEFIR----- 1340
TLA+ ++ P E T + G++L + + + A +Q+ + +
Sbjct: 363 TLARFLIDNPSEKITEIELRKRVKLEGKELEEYLEKEKLKKEAAKKLEQSKDDVEEDIDQ 422
Query: 1341 --ALKPPHVILVHGE 1379
A K H +++ GE
Sbjct: 423 PSAHKMKHDLMMKGE 437
>ref|XP_848582.1| PREDICTED: similar to cleavage and polyadenylation specific factor 2
isoform 2 [Canis familiaris].
Length = 776
Score = 140 bits (353), Expect = 3e-33
Identities = 99/375 (26%), Positives = 180/375 (48%), Gaps = 15/375 (4%)
Frame = +3
Query: 168 LGAGQEVGRSCIILEFKGRKIMLDCGIHPGLEGMDALPYIDLIDPA-----EIDLLLISH 332
L QE C +L+ + +LDCG D +D+ID +ID +L+SH
Sbjct: 10 LSGVQEESALCYLLQVDEFRFLLDCG-------WDEHFSMDIIDSLRKHVHQIDAVLLSH 62
Query: 333 FHLDHCGALPWFLQKTSFKGRTFMTHATKAIYRWLLSDYVKVSNISADDMLYTETDLEES 512
H GALP+ + K + T + + + D + + + D L+T D++ +
Sbjct: 63 PDPLHLGALPYAVGKLGLNCAIYATIPVYKMGQMFMYDLYQSRHNTEDFTLFTLDDVDAA 122
Query: 513 MDKIETINFHEVKEVAG----IKFWCYHAGHVLGAAMFMIEIAGVK-LLYTGDFSRQEDR 677
DKI+ + F ++ + G + AGH++G ++ I G + ++Y DF+ + +
Sbjct: 123 FDKIQQLKFSQIVNLKGKGHGLSITPLPAGHMIGGTIWKIVKDGEEEIVYAVDFNHKREI 182
Query: 678 HLMAAEIPNI-KPDILIIESTYGTHIHEKREEREARFCNTVHDIVNRGGRGLIPVFALGR 854
HL + + +P +LI +S T++ +R++R+ + V + + G LI V GR
Sbjct: 183 HLNGCSLEMLSRPSLLITDSFNATYVQPRRKQRDEQLLTNVLETLRGDGNVLIAVDTAGR 242
Query: 855 AQELLLILDEYWQNHPE-LHDIPIYYASSLAKKCMAVYQTYVNAMNDKIRK--QININNP 1025
EL +LD+ W+ L + ++++ + ++ V M+DK+ + + NNP
Sbjct: 243 VLELAQLLDQIWRTKDAGLGVYSLALLNNVSYNVVEFSKSQVEWMSDKLMRCFEDKRNNP 302
Query: 1026 FVFKHISNLKSMDHFDDI-GPSVVMASPGMMQSGLSRELFESWCTDKRNGVIIAGYCVEG 1202
F F+H+S + + P VV+AS ++ G SR+LF WC D +N +I+ G
Sbjct: 303 FQFRHLSLCHGLSDLARVPSPKVVLASQPDLECGFSRDLFIQWCQDPKNSIILTYRTTPG 362
Query: 1203 TLAKHIMSEPEEITT 1247
TLA+ ++ P E T
Sbjct: 363 TLARFLIDNPSEKIT 377
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 61,724,239
Number of extensions: 1609444
Number of successful extensions: 4826
Number of sequences better than 1.0e-05: 14
Number of HSP's gapped: 4784
Number of HSP's successfully gapped: 21
Length of query: 520
Length of database: 18,874,504
Length adjustment: 107
Effective length of query: 413
Effective length of database: 15,307,552
Effective search space: 6322018976
Effective search space used: 6322018976
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003876
(1560 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_057291.1| cleavage and polyadenylation specificity factor... 946 0.0
Alignment gi|NP_060341.2| integrator complex subunit 11 [Homo sapiens]. 338 8e-93
Alignment gi|NP_059133.1| cleavage and polyadenylation specificity factor... 140 3e-33
Alignment gi|NP_001138631.1| integrator complex subunit 9 isoform 2 [Homo... 80 5e-15
Alignment gi|NP_060720.2| integrator complex subunit 9 isoform 1 [Homo sa... 73 6e-13
Alignment gi|NP_001166033.1| integrator complex subunit 9 isoform 3 [Homo... 73 8e-13
>ref|NP_057291.1| cleavage and polyadenylation specificity factor subunit 3 [Homo
sapiens].
Length = 684
Score = 946 bits (2444), Expect = 0.0
Identities = 465/472 (98%), Positives = 466/472 (98%)
Frame = +3
Query: 120 MSAIPAEESDQLLIRPLGAGQEVGRSCIILEFKGRKIMLDCGIHPGLEGMDALPYIDLID 299
MSAIPAEESDQLLIRPLGAGQEVGRSCIILEFKGRKIMLDCGIHPGLEGMDALPYIDLID
Sbjct: 1 MSAIPAEESDQLLIRPLGAGQEVGRSCIILEFKGRKIMLDCGIHPGLEGMDALPYIDLID 60
Query: 300 PAEIDLLLISHFHLDHCGALPWFLQKTSFKGRTFMTHATKAIYRWLLSDYVKVSNISADD 479
PAEIDLLLISHFHLDHCGALPWFLQKTSFKGRTFMTHATKAIYRWLLSDYVKVSNISADD
Sbjct: 61 PAEIDLLLISHFHLDHCGALPWFLQKTSFKGRTFMTHATKAIYRWLLSDYVKVSNISADD 120
Query: 480 MLYTETDLEESMDKIETINFHEVKEVAGIKFWCYHAGHVLGAAMFMIEIAGVKLLYTGDF 659
MLYTETDLEESMDKIETINFHEVKEVAGIKFWCYHAGHVLGAAMFMIEIAGVKLLYTGDF
Sbjct: 121 MLYTETDLEESMDKIETINFHEVKEVAGIKFWCYHAGHVLGAAMFMIEIAGVKLLYTGDF 180
Query: 660 SRQEDRHLMAAEIPNIKPDILIIESTYGTHIHEKREEREARFCNTVHDIVNRGGRGLIPV 839
SRQEDRHLMAAEIPNIKPDILIIESTYGTHIHEKREEREARFCNTVHDIVNRGGRGLIPV
Sbjct: 181 SRQEDRHLMAAEIPNIKPDILIIESTYGTHIHEKREEREARFCNTVHDIVNRGGRGLIPV 240
Query: 840 FALGRAQELLLILDEYWQNHPELHDIPIYYASSLAKKCMAVYQTYVNAMNDKIRKQININ 1019
FALGRAQELLLILDEYWQNHPELHDIPIYYASSLAKKCMAVYQTYVNAMNDKIRKQININ
Sbjct: 241 FALGRAQELLLILDEYWQNHPELHDIPIYYASSLAKKCMAVYQTYVNAMNDKIRKQININ 300
Query: 1020 NPFVFKHISNLKSMDHFDDIGPSVVMASPGMMQSGLSRELFESWCTDKRNGVIIAGYCVE 1199
NPFVFKHISNLKSMDHFDDIGPSVVMASPGMMQSGLSRELFESWCTDKRNGVIIAGYCVE
Sbjct: 301 NPFVFKHISNLKSMDHFDDIGPSVVMASPGMMQSGLSRELFESWCTDKRNGVIIAGYCVE 360
Query: 1200 GTLAKHIMSEPEEITTMSGQKLPLKMSVDYISFSAHTDYQQTSEFIRALKPPHVILVHGE 1379
GTLAKHIMSEPEEITTMSGQKLPLKMSVDYISFSAHTDYQQTSEFIRALKPPHVILVHGE
Sbjct: 361 GTLAKHIMSEPEEITTMSGQKLPLKMSVDYISFSAHTDYQQTSEFIRALKPPHVILVHGE 420
Query: 1380 QNEMARLKAALIREYEDXDEVHIEVHNPRNTEAVTLNFRGEKLAKLQKLTGD 1535
QNEMARLKAALIREYED DEVHIEVHNPRNTEAVTLNFRGEKLAK+ D
Sbjct: 421 QNEMARLKAALIREYEDNDEVHIEVHNPRNTEAVTLNFRGEKLAKVMGFLAD 472
>ref|NP_060341.2| integrator complex subunit 11 [Homo sapiens].
Length = 600
Score = 338 bits (867), Expect = 8e-93
Identities = 182/455 (40%), Positives = 270/455 (59%), Gaps = 9/455 (1%)
Frame = +3
Query: 150 QLLIRPLGAGQEVGRSCIILEFKGRKIMLDCGIHPGLEGMDALPYIDLIDPAE-----ID 314
++ + PLGAGQ+VGRSCI++ G+ +MLDCG+H G P I +D
Sbjct: 3 EIRVTPLGAGQDVGRSCILVSIAGKNVMLDCGMHMGFNDDRRFPDFSYITQNGRLTDFLD 62
Query: 315 LLLISHFHLDHCGALPWFLQKTSFKGRTFMTHATKAIYRWLLSDYVKVS-NISADDMLYT 491
++ISHFHLDHCGALP+F + + G +MTH T+AI LL DY K++ + + +T
Sbjct: 63 CVIISHFHLDHCGALPYFSEMVGYDGPIYMTHPTQAICPILLEDYRKIAVDKKGEANFFT 122
Query: 492 ETDLEESMDKIETINFHEVKEVAG-IKFWCYHAGHVLGAAMFMIEIAGVKLLYTGDFSRQ 668
+++ M K+ ++ H+ +V ++ Y+AGHVLGAAMF I++ ++YTGD++
Sbjct: 123 SQMIKDCMKKVVAVHLHQTVQVDDELEIKAYYAGHVLGAAMFQIKVGSESVVYTGDYNMT 182
Query: 669 EDRHLMAAEIPNIKPDILIIESTYGTHIHEKREEREARFCNTVHDIVNRGGRGLIPVFAL 848
DRHL AA I +P++LI ESTY T I + + RE F VH+ V RGG+ LIPVFAL
Sbjct: 183 PDRHLGAAWIDKCRPNLLITESTYATTIRDSKRCRERDFLKKVHETVERGGKVLIPVFAL 242
Query: 849 GRAQELLLILDEYWQNHPELHDIPIYYASSLAKKCMAVYQTYVNAMNDKIRKQININNPF 1028
GRAQEL ++L+ +W+ +PIY+++ L +K Y+ ++ N KIRK N F
Sbjct: 243 GRAQELCILLETFWERMN--LKVPIYFSTGLTEKANHYYKLFIPWTNQKIRKTFVQRNMF 300
Query: 1029 VFKHISNLKSMDH--FDDIGPSVVMASPGMMQSGLSRELFESWCTDKRNGVIIAGYCVEG 1202
FKHI K+ D D+ GP VV A+PGM+ +G S ++F W +++N VI+ GYCV+G
Sbjct: 301 EFKHI---KAFDRAFADNPGPMVVFATPGMLHAGQSLQIFRKWAGNEKNMVIMPGYCVQG 357
Query: 1203 TLAKHIMSEPEEITTMSGQKLPLKMSVDYISFSAHTDYQQTSEFIRALKPPHVILVHGEQ 1382
T+ I+S ++ Q L +KM V+Y+SFSAH D + + + +P V+LVHGE
Sbjct: 358 TVGHKILSGQRKLEMEGRQVLEVKMQVEYMSFSAHADAKGIMQLVGQAEPESVLLVHGEA 417
Query: 1383 NEMARLKAALIREYEDXDEVHIEVHNPRNTEAVTL 1487
+M LK + E+ + + P N E VTL
Sbjct: 418 KKMEFLKQKI------EQELRVNCYMPANGETVTL 446
>ref|NP_059133.1| cleavage and polyadenylation specificity factor subunit 2 [Homo
sapiens].
Length = 782
Score = 140 bits (353), Expect = 3e-33
Identities = 99/375 (26%), Positives = 180/375 (48%), Gaps = 15/375 (4%)
Frame = +3
Query: 168 LGAGQEVGRSCIILEFKGRKIMLDCGIHPGLEGMDALPYIDLIDPA-----EIDLLLISH 332
L QE C +L+ + +LDCG D +D+ID +ID +L+SH
Sbjct: 10 LSGVQEESALCYLLQVDEFRFLLDCG-------WDEHFSMDIIDSLRKHVHQIDAVLLSH 62
Query: 333 FHLDHCGALPWFLQKTSFKGRTFMTHATKAIYRWLLSDYVKVSNISADDMLYTETDLEES 512
H GALP+ + K + T + + + D + + + D L+T D++ +
Sbjct: 63 PDPLHLGALPYAVGKLGLNCAIYATIPVYKMGQMFMYDLYQSRHNTEDFTLFTLDDVDAA 122
Query: 513 MDKIETINFHEVKEVAG----IKFWCYHAGHVLGAAMFMIEIAGVK-LLYTGDFSRQEDR 677
DKI+ + F ++ + G + AGH++G ++ I G + ++Y DF+ + +
Sbjct: 123 FDKIQQLKFSQIVNLKGKGHGLSITPLPAGHMIGGTIWKIVKDGEEEIVYAVDFNHKREI 182
Query: 678 HLMAAEIPNI-KPDILIIESTYGTHIHEKREEREARFCNTVHDIVNRGGRGLIPVFALGR 854
HL + + +P +LI +S T++ +R++R+ + V + + G LI V GR
Sbjct: 183 HLNGCSLEMLSRPSLLITDSFNATYVQPRRKQRDEQLLTNVLETLRGDGNVLIAVDTAGR 242
Query: 855 AQELLLILDEYWQNHPE-LHDIPIYYASSLAKKCMAVYQTYVNAMNDKIRK--QININNP 1025
EL +LD+ W+ L + ++++ + ++ V M+DK+ + + NNP
Sbjct: 243 VLELAQLLDQIWRTKDAGLGVYSLALLNNVSYNVVEFSKSQVEWMSDKLMRCFEDKRNNP 302
Query: 1026 FVFKHISNLKSMDHFDDI-GPSVVMASPGMMQSGLSRELFESWCTDKRNGVIIAGYCVEG 1202
F F+H+S + + P VV+AS ++ G SR+LF WC D +N +I+ G
Sbjct: 303 FQFRHLSLCHGLSDLARVPSPKVVLASQPDLECGFSRDLFIQWCQDPKNSIILTYRTTPG 362
Query: 1203 TLAKHIMSEPEEITT 1247
TLA+ ++ P E T
Sbjct: 363 TLARFLIDNPSEKIT 377
>ref|NP_001138631.1| integrator complex subunit 9 isoform 2 [Homo sapiens].
Length = 637
Score = 80.1 bits (196), Expect = 5e-15
Identities = 96/455 (21%), Positives = 168/455 (36%), Gaps = 66/455 (14%)
Frame = +3
Query: 198 CIILEFKGRKIMLDCGIH---------------------PGLEGMDALPYID---LIDPA 305
C +L+FK IMLDCG+ PG D ++D LID +
Sbjct: 14 CNVLKFKSTTIMLDCGLDMTSTLNFLPLPLVQSPRLSNLPGWSLKDGNAFLDKTELIDLS 73
Query: 306 EIDLLLISHFHLDHCGALPWFLQKTSFKGRTFMTHATKAIYRWLLSDYVK---------- 455
+D++LIS++H ALP+ + T F G + T T I R L+ + V
Sbjct: 74 TVDVILISNYHC--MMALPYITEHTGFTGTVYATEPTVQIGRLLMEELVNFIERVPKAQS 131
Query: 456 -------------------VSNISADDMLYTETDLEESMDKIETINFHEVKEVAG-IKFW 575
+S YT ++ ++ KI+ + + + E+ G ++
Sbjct: 132 ASLWKNKDIQRLLPSPLKDAVEVSTWRRCYTMQEVNSALSKIQLVGYSQKIELFGAVQVT 191
Query: 576 CYHAGHVLGAAMFMIEIAGVKLLYTGDFSRQEDRHLMAAEIPNIKPDILIIESTYGTHIH 755
+G+ LG++ ++I+ K+ Y S + D+L++ T I
Sbjct: 192 PLSSGYALGSSNWIIQSHYEKVSYVSGSSLLTTHPQPMDQASLKNSDVLVLTGL--TQIP 249
Query: 756 EKREE-REARFCNTVHDIVNRGGRGLIPVFALGRAQELLLILDEYWQNHPELHDIPIYYA 932
+ FC+ + V GG L+P + G +LL L +Y + L +P+Y+
Sbjct: 250 TANPDGMVGEFCSNLALTVRNGGNVLVPCYPSGVIYDLLECLYQYIDS-AGLSSVPLYFI 308
Query: 933 SSLAKKCMAVYQTYVNAM-NDKIRKQININNPFVFKHISNLKSMDHFDDI---------G 1082
S +A + Q + + ++K K PF + + H+ I
Sbjct: 309 SPVANSSLEFSQIFAEWLCHNKQSKVYLPEPPFPHAELIQTNKLKHYPSIHGDFSNDFRQ 368
Query: 1083 PSVVMASPGMMQSGLSRELFESWCTDKRNGVIIAGYCVEGTLAKHIMSEPE-EITTMSGQ 1259
P VV ++ G E W N V I +EP+
Sbjct: 369 PCVVFTGHPSLRFGDVVHFMELWGKSSLNTV--------------IFTEPDFSYLEALAP 414
Query: 1260 KLPLKMSVDYISFSAHTDYQQTSEFIRALKPPHVI 1364
PL M Y ++ Q S+ ++ ++P HV+
Sbjct: 415 YQPLAMKCIYCPIDTRLNFIQVSKLLKEVQPLHVV 449
>ref|NP_060720.2| integrator complex subunit 9 isoform 1 [Homo sapiens].
Length = 658
Score = 73.2 bits (178), Expect = 6e-13
Identities = 97/476 (20%), Positives = 168/476 (35%), Gaps = 87/476 (18%)
Frame = +3
Query: 198 CIILEFKGRKIMLDCGIH---------------------PGLEGMDA------------- 275
C +L+FK IMLDCG+ PG D
Sbjct: 14 CNVLKFKSTTIMLDCGLDMTSTLNFLPLPLVQSPRLSNLPGWSLKDGNAFLDKELKECSG 73
Query: 276 -----------LPYIDLIDPAEIDLLLISHFHLDHCGALPWFLQKTSFKGRTFMTHATKA 422
LP +LID + +D++LIS++H ALP+ + T F G + T T
Sbjct: 74 HVFVDSVPEFCLPETELIDLSTVDVILISNYHC--MMALPYITEHTGFTGTVYATEPTVQ 131
Query: 423 IYRWLLSDYVK-----------------------------VSNISADDMLYTETDLEESM 515
I R L+ + V +S YT ++ ++
Sbjct: 132 IGRLLMEELVNFIERVPKAQSASLWKNKDIQRLLPSPLKDAVEVSTWRRCYTMQEVNSAL 191
Query: 516 DKIETINFHEVKEVAG-IKFWCYHAGHVLGAAMFMIEIAGVKLLYTGDFSRQEDRHLMAA 692
KI+ + + + E+ G ++ +G+ LG++ ++I+ K+ Y S
Sbjct: 192 SKIQLVGYSQKIELFGAVQVTPLSSGYALGSSNWIIQSHYEKVSYVSGSSLLTTHPQPMD 251
Query: 693 EIPNIKPDILIIESTYGTHIHEKREE-REARFCNTVHDIVNRGGRGLIPVFALGRAQELL 869
+ D+L++ T I + FC+ + V GG L+P + G +LL
Sbjct: 252 QASLKNSDVLVLTGL--TQIPTANPDGMVGEFCSNLALTVRNGGNVLVPCYPSGVIYDLL 309
Query: 870 LILDEYWQNHPELHDIPIYYASSLAKKCMAVYQTYVNAM-NDKIRKQININNPFVFKHIS 1046
L +Y + L +P+Y+ S +A + Q + + ++K K PF +
Sbjct: 310 ECLYQYIDS-AGLSSVPLYFISPVANSSLEFSQIFAEWLCHNKQSKVYLPEPPFPHAELI 368
Query: 1047 NLKSMDHFDDI---------GPSVVMASPGMMQSGLSRELFESWCTDKRNGVIIAGYCVE 1199
+ H+ I P VV ++ G E W N V
Sbjct: 369 QTNKLKHYPSIHGDFSNDFRQPCVVFTGHPSLRFGDVVHFMELWGKSSLNTV-------- 420
Query: 1200 GTLAKHIMSEPE-EITTMSGQKLPLKMSVDYISFSAHTDYQQTSEFIRALKPPHVI 1364
I +EP+ PL M Y ++ Q S+ ++ ++P HV+
Sbjct: 421 ------IFTEPDFSYLEALAPYQPLAMKCIYCPIDTRLNFIQVSKLLKEVQPLHVV 470
>ref|NP_001166033.1| integrator complex subunit 9 isoform 3 [Homo sapiens].
Length = 634
Score = 72.8 bits (177), Expect = 8e-13
Identities = 87/424 (20%), Positives = 160/424 (37%), Gaps = 44/424 (10%)
Frame = +3
Query: 225 KIMLDCGIHPGLEGMD--ALPYIDLIDPAEIDLLLISHFHLDHCGALPWFLQKTSFKGRT 398
K + +C H ++ + LP +LID + +D++LIS++H ALP+ + T F G
Sbjct: 42 KELKECSGHVFVDSVPEFCLPETELIDLSTVDVILISNYHC--MMALPYITEHTGFTGTV 99
Query: 399 FMTHATKAIYRWLLSDYVK-----------------------------VSNISADDMLYT 491
+ T T I R L+ + V +S YT
Sbjct: 100 YATEPTVQIGRLLMEELVNFIERVPKAQSASLWKNKDIQRLLPSPLKDAVEVSTWRRCYT 159
Query: 492 ETDLEESMDKIETINFHEVKEVAG-IKFWCYHAGHVLGAAMFMIEIAGVKLLYTGDFSRQ 668
++ ++ KI+ + + + E+ G ++ +G+ LG++ ++I+ K+ Y S
Sbjct: 160 MQEVNSALSKIQLVGYSQKIELFGAVQVTPLSSGYALGSSNWIIQSHYEKVSYVSGSSLL 219
Query: 669 EDRHLMAAEIPNIKPDILIIESTYGTHIHEKREE-REARFCNTVHDIVNRGGRGLIPVFA 845
+ D+L++ T I + FC+ + V GG L+P +
Sbjct: 220 TTHPQPMDQASLKNSDVLVLTGL--TQIPTANPDGMVGEFCSNLALTVRNGGNVLVPCYP 277
Query: 846 LGRAQELLLILDEYWQNHPELHDIPIYYASSLAKKCMAVYQTYVNAM-NDKIRKQININN 1022
G +LL L +Y + L +P+Y+ S +A + Q + + ++K K
Sbjct: 278 SGVIYDLLECLYQYIDS-AGLSSVPLYFISPVANSSLEFSQIFAEWLCHNKQSKVYLPEP 336
Query: 1023 PFVFKHISNLKSMDHFDDI---------GPSVVMASPGMMQSGLSRELFESWCTDKRNGV 1175
PF + + H+ I P VV ++ G E W N V
Sbjct: 337 PFPHAELIQTNKLKHYPSIHGDFSNDFRQPCVVFTGHPSLRFGDVVHFMELWGKSSLNTV 396
Query: 1176 IIAGYCVEGTLAKHIMSEPE-EITTMSGQKLPLKMSVDYISFSAHTDYQQTSEFIRALKP 1352
I +EP+ PL M Y ++ Q S+ ++ ++P
Sbjct: 397 --------------IFTEPDFSYLEALAPYQPLAMKCIYCPIDTRLNFIQVSKLLKEVQP 442
Query: 1353 PHVI 1364
HV+
Sbjct: 443 LHVV 446
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 60,644,647
Number of extensions: 1585332
Number of successful extensions: 4567
Number of sequences better than 1.0e-05: 6
Number of HSP's gapped: 4556
Number of HSP's successfully gapped: 8
Length of query: 520
Length of database: 18,297,164
Length adjustment: 107
Effective length of query: 413
Effective length of database: 14,770,016
Effective search space: 6100016608
Effective search space used: 6100016608
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003876
(1560 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_061283.2| cleavage and polyadenylation specificity factor... 943 0.0
Alignment gi|NP_082296.1| integrator complex subunit 11 [Mus musculus]. 340 2e-93
Alignment gi|NP_058552.1| cleavage and polyadenylation specificity factor... 140 2e-33
Alignment gi|NP_700463.2| integrator complex subunit 9 [Mus musculus]. 72 1e-12
>ref|NP_061283.2| cleavage and polyadenylation specificity factor subunit 3 [Mus
musculus].
Length = 684
Score = 943 bits (2437), Expect = 0.0
Identities = 463/472 (98%), Positives = 466/472 (98%)
Frame = +3
Query: 120 MSAIPAEESDQLLIRPLGAGQEVGRSCIILEFKGRKIMLDCGIHPGLEGMDALPYIDLID 299
MSAIPAEESDQLLIRPLGAGQEVGRSCIILEFKGRKIMLDCGIHPGLEGMDALPYIDLID
Sbjct: 1 MSAIPAEESDQLLIRPLGAGQEVGRSCIILEFKGRKIMLDCGIHPGLEGMDALPYIDLID 60
Query: 300 PAEIDLLLISHFHLDHCGALPWFLQKTSFKGRTFMTHATKAIYRWLLSDYVKVSNISADD 479
PAEIDLLLISHFHLDHCGALPWFLQKTSFKGRTFMTHATKAIYRWLLSDYVKVSNISADD
Sbjct: 61 PAEIDLLLISHFHLDHCGALPWFLQKTSFKGRTFMTHATKAIYRWLLSDYVKVSNISADD 120
Query: 480 MLYTETDLEESMDKIETINFHEVKEVAGIKFWCYHAGHVLGAAMFMIEIAGVKLLYTGDF 659
MLYTETDLEESMDKIETINFHEVKEVAGIKFWCYHAGHVLGAAMFMIEIAGVKLLYTGDF
Sbjct: 121 MLYTETDLEESMDKIETINFHEVKEVAGIKFWCYHAGHVLGAAMFMIEIAGVKLLYTGDF 180
Query: 660 SRQEDRHLMAAEIPNIKPDILIIESTYGTHIHEKREEREARFCNTVHDIVNRGGRGLIPV 839
SRQEDRHLMAAEIPNIKPDILIIESTYGTHIHEKREEREARFCNTVHDIVNRGGRGLIPV
Sbjct: 181 SRQEDRHLMAAEIPNIKPDILIIESTYGTHIHEKREEREARFCNTVHDIVNRGGRGLIPV 240
Query: 840 FALGRAQELLLILDEYWQNHPELHDIPIYYASSLAKKCMAVYQTYVNAMNDKIRKQININ 1019
FALGRAQELLLILDEYWQNHPELHDIPIYYASSLAKKCMAVYQTYVNAMNDKIRKQININ
Sbjct: 241 FALGRAQELLLILDEYWQNHPELHDIPIYYASSLAKKCMAVYQTYVNAMNDKIRKQININ 300
Query: 1020 NPFVFKHISNLKSMDHFDDIGPSVVMASPGMMQSGLSRELFESWCTDKRNGVIIAGYCVE 1199
NPFVFKHISNLKSMDHFDDIGPSVVMASPGM+Q+GLSRELFESWCTDKRNGVIIAGYCVE
Sbjct: 301 NPFVFKHISNLKSMDHFDDIGPSVVMASPGMIQNGLSRELFESWCTDKRNGVIIAGYCVE 360
Query: 1200 GTLAKHIMSEPEEITTMSGQKLPLKMSVDYISFSAHTDYQQTSEFIRALKPPHVILVHGE 1379
GTLAKHIMSEPEEITTMSGQKLPLKMSVDYISFSAHTDYQQTSEFIRALKPPHVILVHGE
Sbjct: 361 GTLAKHIMSEPEEITTMSGQKLPLKMSVDYISFSAHTDYQQTSEFIRALKPPHVILVHGE 420
Query: 1380 QNEMARLKAALIREYEDXDEVHIEVHNPRNTEAVTLNFRGEKLAKLQKLTGD 1535
QNEMARLKAALIREYED DEVHIEVHNPRNTEAVTLNFRGEKLAK+ D
Sbjct: 421 QNEMARLKAALIREYEDNDEVHIEVHNPRNTEAVTLNFRGEKLAKVMGFLAD 472
>ref|NP_082296.1| integrator complex subunit 11 [Mus musculus].
Length = 600
Score = 340 bits (871), Expect = 2e-93
Identities = 181/455 (39%), Positives = 272/455 (59%), Gaps = 9/455 (1%)
Frame = +3
Query: 150 QLLIRPLGAGQEVGRSCIILEFKGRKIMLDCGIHPGLEGMDALPYIDLIDPAE-----ID 314
++ + PLGAGQ+VGRSCI++ G+ +MLDCG+H G P I + +D
Sbjct: 3 EIRVTPLGAGQDVGRSCILVSISGKNVMLDCGMHMGYNDDRRFPDFSYITQSGRLTDFLD 62
Query: 315 LLLISHFHLDHCGALPWFLQKTSFKGRTFMTHATKAIYRWLLSDYVKVS-NISADDMLYT 491
++ISHFHLDHCGALP+F + + G +MTH T+AI LL DY K++ + + +T
Sbjct: 63 CVIISHFHLDHCGALPYFSEMVGYDGPIYMTHPTQAICPILLEDYRKIAVDKKGEANFFT 122
Query: 492 ETDLEESMDKIETINFHEVKEVAG-IKFWCYHAGHVLGAAMFMIEIAGVKLLYTGDFSRQ 668
+++ M K+ ++ H+ +V ++ Y+AGHVLGAAMF I++ ++YTGD++
Sbjct: 123 SQMIKDCMKKVVAVHLHQTVQVDDELEIKAYYAGHVLGAAMFQIKVGSESVVYTGDYNMT 182
Query: 669 EDRHLMAAEIPNIKPDILIIESTYGTHIHEKREEREARFCNTVHDIVNRGGRGLIPVFAL 848
DRHL AA I +P++LI ESTY T I + + RE F VH+ V RGG+ LIPVFAL
Sbjct: 183 PDRHLGAAWIDKCRPNLLITESTYATTIRDSKRCRERDFLKKVHETVERGGKVLIPVFAL 242
Query: 849 GRAQELLLILDEYWQNHPELHDIPIYYASSLAKKCMAVYQTYVNAMNDKIRKQININNPF 1028
GRAQEL ++L+ +W+ +PIY+++ L +K Y+ ++ N KIRK N F
Sbjct: 243 GRAQELCILLETFWERMN--LKVPIYFSTGLTEKANHYYKLFITWTNQKIRKTFVQRNMF 300
Query: 1029 VFKHISNLKSMDH--FDDIGPSVVMASPGMMQSGLSRELFESWCTDKRNGVIIAGYCVEG 1202
FKHI K+ D D+ GP VV A+PGM+ +G S ++F W +++N VI+ GYCV+G
Sbjct: 301 EFKHI---KAFDRTFADNPGPMVVFATPGMLHAGQSLQIFRKWAGNEKNMVIMPGYCVQG 357
Query: 1203 TLAKHIMSEPEEITTMSGQKLPLKMSVDYISFSAHTDYQQTSEFIRALKPPHVILVHGEQ 1382
T+ I+S ++ Q L +KM V+Y+SFSAH D + + + +P V+LVHGE
Sbjct: 358 TVGHKILSGQRKLEMEGRQMLEVKMQVEYMSFSAHADAKGIMQLVGQAEPESVLLVHGEA 417
Query: 1383 NEMARLKAALIREYEDXDEVHIEVHNPRNTEAVTL 1487
+M L+ + +E+ + + P N E VTL
Sbjct: 418 KKMEFLRQKIEQEF------RVSCYMPANGETVTL 446
>ref|NP_058552.1| cleavage and polyadenylation specificity factor subunit 2 [Mus
musculus].
Length = 782
Score = 140 bits (354), Expect = 2e-33
Identities = 99/375 (26%), Positives = 180/375 (48%), Gaps = 15/375 (4%)
Frame = +3
Query: 168 LGAGQEVGRSCIILEFKGRKIMLDCGIHPGLEGMDALPYIDLIDPA-----EIDLLLISH 332
L QE C +L+ + +LDCG D +D+ID +ID +L+SH
Sbjct: 10 LSGVQEESALCYLLQVDEFRFLLDCG-------WDEHFSVDIIDSLRKHVHQIDAVLLSH 62
Query: 333 FHLDHCGALPWFLQKTSFKGRTFMTHATKAIYRWLLSDYVKVSNISADDMLYTETDLEES 512
H GALP+ + K + T + + + D + + + D L+T D++ +
Sbjct: 63 PDPLHLGALPFAVGKLGLNCAIYATIPVYKMGQMFMYDLYQSRHNTEDFTLFTLDDVDAA 122
Query: 513 MDKIETINFHEVKEVAG----IKFWCYHAGHVLGAAMFMIEIAGVK-LLYTGDFSRQEDR 677
DKI+ + F ++ + G + AGH++G ++ I G + ++Y DF+ + +
Sbjct: 123 FDKIQQLKFSQIVNLKGKGHGLSITPLPAGHMIGGTIWKIVKDGEEEIVYAVDFNHKREI 182
Query: 678 HLMAAEIPNI-KPDILIIESTYGTHIHEKREEREARFCNTVHDIVNRGGRGLIPVFALGR 854
HL + + +P +LI +S T++ +R++R+ + V + + G LI V GR
Sbjct: 183 HLNGCSLEMLSRPSLLITDSFNATYVQPRRKQRDEQLLTNVLETLRGDGNVLIAVDTAGR 242
Query: 855 AQELLLILDEYWQNHPE-LHDIPIYYASSLAKKCMAVYQTYVNAMNDKIRK--QININNP 1025
EL +LD+ W+ L + ++++ + ++ V M+DK+ + + NNP
Sbjct: 243 VLELAQLLDQIWRTKDAGLGVYSLALLNNVSYNVVEFSKSQVEWMSDKLMRCFEDKRNNP 302
Query: 1026 FVFKHISNLKSMDHFDDI-GPSVVMASPGMMQSGLSRELFESWCTDKRNGVIIAGYCVEG 1202
F F+H+S + + P VV+AS ++ G SR+LF WC D +N +I+ G
Sbjct: 303 FQFRHLSLCHGLSDLARVPSPKVVLASQPDLECGFSRDLFIQWCQDPKNSIILTYRTTPG 362
Query: 1203 TLAKHIMSEPEEITT 1247
TLA+ ++ P E T
Sbjct: 363 TLARFLIDNPTEKVT 377
>ref|NP_700463.2| integrator complex subunit 9 [Mus musculus].
Length = 687
Score = 72.0 bits (175), Expect = 1e-12
Identities = 97/476 (20%), Positives = 168/476 (35%), Gaps = 87/476 (18%)
Frame = +3
Query: 198 CIILEFKGRKIMLDCGIH---------------------PGLEGMDA------------- 275
C +L+FK IMLDCG+ PG D
Sbjct: 43 CNVLKFKSTTIMLDCGLDMTSTLNFLPLPLVQSPRLSNLPGWSLKDGNAFLDKELKECSG 102
Query: 276 -----------LPYIDLIDPAEIDLLLISHFHLDHCGALPWFLQKTSFKGRTFMTHATKA 422
LP +LID + +D++LIS++H ALP+ + T F G + T T
Sbjct: 103 HVFVDSVPEFCLPETELIDLSTVDVILISNYHC--MMALPYITEHTGFTGTVYATEPTMQ 160
Query: 423 IYRWLLSDYVK-----------------------------VSNISADDMLYTETDLEESM 515
I R L+ + V +S YT ++ ++
Sbjct: 161 IGRLLMEELVNFIERVPKAQSASLWKNKDIQRLLPSPLKDAVEVSTWRRCYTMQEVNSAL 220
Query: 516 DKIETINFHEVKEVAG-IKFWCYHAGHVLGAAMFMIEIAGVKLLYTGDFSRQEDRHLMAA 692
KI+ + + + E+ G ++ +G+ LG++ ++I+ K+ Y S
Sbjct: 221 SKIQLVGYSQKIELFGAVQVTPLSSGYALGSSNWIIQSHYEKVSYVSGSSLLTTHPQPMD 280
Query: 693 EIPNIKPDILIIESTYGTHIHEKREE-REARFCNTVHDIVNRGGRGLIPVFALGRAQELL 869
+ D+LI+ T I + FC+ + V GG L+P + G +LL
Sbjct: 281 QASLKNSDVLILTGL--TQIPTANPDGMVGEFCSNLALTVRNGGNVLVPCYPSGVIYDLL 338
Query: 870 LILDEYWQNHPELHDIPIYYASSLAKKCMAVYQTYVNAM-NDKIRKQININNPFVFKHIS 1046
L +Y + L +IP Y+ S +A + Q + + ++K K PF +
Sbjct: 339 ECLYQYIDS-AGLSNIPFYFISPVANSSLEFSQIFAEWLCHNKQSKVYLPEPPFPHAELI 397
Query: 1047 NLKSMDHFDDI---------GPSVVMASPGMMQSGLSRELFESWCTDKRNGVIIAGYCVE 1199
+ H+ I P V+ ++ G E W N +
Sbjct: 398 QTNKLKHYRSIHGDFSNDFRQPCVLFTGHPSLRFGDVVHFMELWGKSSLNTI-------- 449
Query: 1200 GTLAKHIMSEPE-EITTMSGQKLPLKMSVDYISFSAHTDYQQTSEFIRALKPPHVI 1364
I +EP+ PL M Y ++ Q S+ ++ ++P HV+
Sbjct: 450 ------IFTEPDFSYLEALAPYQPLAMKCIYCPIDTRLNFIQVSKLLKEVQPLHVV 499
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 51,562,130
Number of extensions: 1335723
Number of successful extensions: 3684
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 3670
Number of HSP's successfully gapped: 5
Length of query: 520
Length of database: 15,617,559
Length adjustment: 106
Effective length of query: 414
Effective length of database: 12,433,743
Effective search space: 5147569602
Effective search space used: 5147569602
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003876
(1560 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_003354974.1| PREDICTED: cleavage and polyadenylation spec... 946 0.0
Alignment gi|XP_003127541.2| PREDICTED: integrator complex subunit 11-lik... 236 3e-62
Alignment gi|XP_001926907.2| PREDICTED: cleavage and polyadenylation spec... 140 3e-33
Alignment gi|XP_003356165.1| PREDICTED: integrator complex subunit 11-lik... 107 2e-23
Alignment gi|XP_001929033.3| PREDICTED: integrator complex subunit 9 [Sus... 57 3e-08
>ref|XP_003354974.1| PREDICTED: cleavage and polyadenylation specificity factor subunit
3-like [Sus scrofa].
Length = 684
Score = 946 bits (2444), Expect = 0.0
Identities = 465/472 (98%), Positives = 466/472 (98%)
Frame = +3
Query: 120 MSAIPAEESDQLLIRPLGAGQEVGRSCIILEFKGRKIMLDCGIHPGLEGMDALPYIDLID 299
MSAIPAEESDQLLIRPLGAGQEVGRSCIILEFKGRKIMLDCGIHPGLEGMDALPYIDLID
Sbjct: 1 MSAIPAEESDQLLIRPLGAGQEVGRSCIILEFKGRKIMLDCGIHPGLEGMDALPYIDLID 60
Query: 300 PAEIDLLLISHFHLDHCGALPWFLQKTSFKGRTFMTHATKAIYRWLLSDYVKVSNISADD 479
PAEIDLLLISHFHLDHCGALPWFLQKTSFKGRTFMTHATKAIYRWLLSDYVKVSNISADD
Sbjct: 61 PAEIDLLLISHFHLDHCGALPWFLQKTSFKGRTFMTHATKAIYRWLLSDYVKVSNISADD 120
Query: 480 MLYTETDLEESMDKIETINFHEVKEVAGIKFWCYHAGHVLGAAMFMIEIAGVKLLYTGDF 659
MLYTETDLEESMDKIETINFHEVKEVAGIKFWCYHAGHVLGAAMFMIEIAGVKLLYTGDF
Sbjct: 121 MLYTETDLEESMDKIETINFHEVKEVAGIKFWCYHAGHVLGAAMFMIEIAGVKLLYTGDF 180
Query: 660 SRQEDRHLMAAEIPNIKPDILIIESTYGTHIHEKREEREARFCNTVHDIVNRGGRGLIPV 839
SRQEDRHLMAAEIPNIKPDILIIESTYGTHIHEKREEREARFCNTVHDIVNRGGRGLIPV
Sbjct: 181 SRQEDRHLMAAEIPNIKPDILIIESTYGTHIHEKREEREARFCNTVHDIVNRGGRGLIPV 240
Query: 840 FALGRAQELLLILDEYWQNHPELHDIPIYYASSLAKKCMAVYQTYVNAMNDKIRKQININ 1019
FALGRAQELLLILDEYWQNHPELHDIPIYYASSLAKKCMAVYQTYVNAMNDKIRKQININ
Sbjct: 241 FALGRAQELLLILDEYWQNHPELHDIPIYYASSLAKKCMAVYQTYVNAMNDKIRKQININ 300
Query: 1020 NPFVFKHISNLKSMDHFDDIGPSVVMASPGMMQSGLSRELFESWCTDKRNGVIIAGYCVE 1199
NPFVFKHISNLKSMDHFDDIGPSVVMASPGMMQSGLSRELFESWCTDKRNGVIIAGYCVE
Sbjct: 301 NPFVFKHISNLKSMDHFDDIGPSVVMASPGMMQSGLSRELFESWCTDKRNGVIIAGYCVE 360
Query: 1200 GTLAKHIMSEPEEITTMSGQKLPLKMSVDYISFSAHTDYQQTSEFIRALKPPHVILVHGE 1379
GTLAKHIMSEPEEITTMSGQKLPLKMSVDYISFSAHTDYQQTSEFIRALKPPHVILVHGE
Sbjct: 361 GTLAKHIMSEPEEITTMSGQKLPLKMSVDYISFSAHTDYQQTSEFIRALKPPHVILVHGE 420
Query: 1380 QNEMARLKAALIREYEDXDEVHIEVHNPRNTEAVTLNFRGEKLAKLQKLTGD 1535
QNEMARLKAALIREYED DEVHIEVHNPRNTEAVTLNFRGEKLAK+ D
Sbjct: 421 QNEMARLKAALIREYEDNDEVHIEVHNPRNTEAVTLNFRGEKLAKVMGFLAD 472
>ref|XP_003127541.2| PREDICTED: integrator complex subunit 11-like [Sus scrofa].
Length = 465
Score = 236 bits (602), Expect = 3e-62
Identities = 128/305 (41%), Positives = 184/305 (60%), Gaps = 2/305 (0%)
Frame = +3
Query: 579 YHAGHVLGAAMFMIEIAGVKLLYTGDFSRQEDRHLMAAEIPNIKPDILIIESTYGTHIHE 758
Y+AGHVLGAAMF I++ ++YTGD++ DRHL AA I +P++LI ESTY T I +
Sbjct: 19 YYAGHVLGAAMFQIKVGSESVVYTGDYNMTPDRHLGAAWIDKCRPNLLITESTYATTIRD 78
Query: 759 KREEREARFCNTVHDIVNRGGRGLIPVFALGRAQELLLILDEYWQNHPELHDIPIYYASS 938
+ RE F VH+ V RGG+ LIPVFALGRAQEL ++L+ +W+ PIY+++
Sbjct: 79 SKRCRERDFLKKVHETVERGGKVLIPVFALGRAQELCILLETFWERMD--LKAPIYFSTG 136
Query: 939 LAKKCMAVYQTYVNAMNDKIRKQININNPFVFKHISNLKSMDH--FDDIGPSVVMASPGM 1112
L +K Y+ ++ N KIRK N F FKHI K+ D D GP VV A+PGM
Sbjct: 137 LTEKANHYYKLFIPWTNQKIRKTFVQRNMFEFKHI---KAFDRAFADSPGPMVVFATPGM 193
Query: 1113 MQSGLSRELFESWCTDKRNGVIIAGYCVEGTLAKHIMSEPEEITTMSGQKLPLKMSVDYI 1292
+ +G S ++F W +++N VI+ GYCV+GT+ I+S ++ Q L +KM V+Y+
Sbjct: 194 LHAGQSLQIFRKWAGNEKNMVIMPGYCVQGTVGHKILSGQRKLELEGRQVLEVKMQVEYM 253
Query: 1293 SFSAHTDYQQTSEFIRALKPPHVILVHGEQNEMARLKAALIREYEDXDEVHIEVHNPRNT 1472
SFSAH D + + + +P +V+LVHGE +M LK + +E+ + + P N
Sbjct: 254 SFSAHADAKGIMQLVGQAEPENVLLVHGEAKKMEFLKQKIEQEF------RLSCYMPANG 307
Query: 1473 EAVTL 1487
E VTL
Sbjct: 308 ETVTL 312
>ref|XP_001926907.2| PREDICTED: cleavage and polyadenylation specificity factor subunit 2
[Sus scrofa].
Length = 834
Score = 140 bits (352), Expect = 3e-33
Identities = 99/375 (26%), Positives = 180/375 (48%), Gaps = 15/375 (4%)
Frame = +3
Query: 168 LGAGQEVGRSCIILEFKGRKIMLDCGIHPGLEGMDALPYIDLIDPA-----EIDLLLISH 332
L QE C +L+ + +LDCG D +D+ID +ID +L+SH
Sbjct: 10 LSGVQEESALCYLLQVDEFRFLLDCG-------WDEHFSMDIIDSLRKHVHQIDAVLLSH 62
Query: 333 FHLDHCGALPWFLQKTSFKGRTFMTHATKAIYRWLLSDYVKVSNISADDMLYTETDLEES 512
H GALP+ + K + T + + + D + + + D L+T D++ +
Sbjct: 63 PDPLHLGALPYAVGKLGLNCAIYATIPVYKMGQMFMYDLYQSRHNTEDFTLFTLDDVDAA 122
Query: 513 MDKIETINFHEVKEVAG----IKFWCYHAGHVLGAAMFMIEIAGVK-LLYTGDFSRQEDR 677
DKI+ + F ++ + G + AGH++G ++ I G + ++Y DF+ + +
Sbjct: 123 FDKIQQLKFSQIVNLKGKGHGLSITPLPAGHMIGGTIWKIVKDGEEEIVYAVDFNHKREI 182
Query: 678 HLMAAEIPNI-KPDILIIESTYGTHIHEKREEREARFCNTVHDIVNRGGRGLIPVFALGR 854
HL + + +P +LI +S T++ +R++R+ + V + + G LI V GR
Sbjct: 183 HLNGCSLEMLSRPSLLITDSFNATYVQPRRKQRDEQLLTNVLETLRGDGSVLIAVDTAGR 242
Query: 855 AQELLLILDEYWQNHPE-LHDIPIYYASSLAKKCMAVYQTYVNAMNDKIRK--QININNP 1025
EL +LD+ W+ L + ++++ + ++ V M+DK+ + + NNP
Sbjct: 243 VLELAQLLDQIWRTKDAGLGVYSLALLNNVSYNVVEFSKSQVEWMSDKLMRCFEDKRNNP 302
Query: 1026 FVFKHISNLKSMDHFDDI-GPSVVMASPGMMQSGLSRELFESWCTDKRNGVIIAGYCVEG 1202
F F+H+S + + P VV+AS ++ G SR+LF WC D +N +I+ G
Sbjct: 303 FQFRHLSLCHGLSDLARVPSPKVVLASQPDLECGFSRDLFIQWCQDPKNSIILTYRTTPG 362
Query: 1203 TLAKHIMSEPEEITT 1247
TLA+ ++ P E T
Sbjct: 363 TLARFLIDNPSEKIT 377
>ref|XP_003356165.1| PREDICTED: integrator complex subunit 11-like [Sus scrofa].
Length = 294
Score = 107 bits (267), Expect = 2e-23
Identities = 54/148 (36%), Positives = 84/148 (56%), Gaps = 6/148 (4%)
Frame = +3
Query: 132 PAEESDQLLIRPLGAGQEVGRSCIILEFKGRKIMLDCGIHPGLEGMDALPYIDLIDPAE- 308
P+ ++ + PLGAGQ+VGRSCI++ G+ +MLDCG+H G P I
Sbjct: 114 PSLRMPEIRVTPLGAGQDVGRSCILVSIGGKNVMLDCGMHMGFSDDRRFPDFSYITRHGR 173
Query: 309 ----IDLLLISHFHLDHCGALPWFLQKTSFKGRTFMTHATKAIYRWLLSDYVKVS-NISA 473
+D ++ISHFHLDHCGALP+F + + G +MT T+AI LL DY K++ +
Sbjct: 174 LTDFLDCVIISHFHLDHCGALPYFSEMVGYDGPIYMTQPTQAICPILLEDYRKIAVDKKG 233
Query: 474 DDMLYTETDLEESMDKIETINFHEVKEV 557
+ +T +++ M K ++ H+ +V
Sbjct: 234 EANFFTSQMIKDCMKKAVAVHLHQTVQV 261
>ref|XP_001929033.3| PREDICTED: integrator complex subunit 9 [Sus scrofa].
Length = 667
Score = 57.0 bits (136), Expect = 3e-08
Identities = 76/379 (20%), Positives = 134/379 (35%), Gaps = 42/379 (11%)
Frame = +3
Query: 354 ALPWFLQKTSFKGRTFMTHATKAIYRWLLSDYVK-------------------------- 455
ALP+ + T F G + T T I R L+ + V
Sbjct: 3 ALPYITEHTGFTGTVYATEPTVQIGRLLMEELVNFIERVPKAQSASLWKNKDIQRLLPSP 62
Query: 456 ---VSNISADDMLYTETDLEESMDKIETINFHEVKEVAG-IKFWCYHAGHVLGAAMFMIE 623
+S YT ++ ++ KI+ + + + E+ G ++ +G+ LG++ ++I+
Sbjct: 63 LKDAVEVSTWRRCYTMQEVNSALSKIQMVGYSQKIELFGAVQVTPLSSGYALGSSNWIIQ 122
Query: 624 IAGVKLLYTGDFSRQEDRHLMAAEIPNIKPDILIIESTYGTHIHEKREE-REARFCNTVH 800
K+ Y S + D+LI+ T I + FC+ +
Sbjct: 123 SHYEKVSYVSGSSLLTTHPQPMDQASLKNSDVLILTGL--TQIPTANPDGMVGEFCSNLA 180
Query: 801 DIVNRGGRGLIPVFALGRAQELLLILDEYWQNHPELHDIPIYYASSLAKKCMAVYQTYVN 980
V GG L+P + G +LL L +Y + L IP Y+ S +A + Q +
Sbjct: 181 LTVRNGGNVLVPCYPSGVIYDLLECLYQYIDS-AGLSSIPFYFISPVANSSLEFSQIFAE 239
Query: 981 AM-NDKIRKQININNPFVFKHISNLKSMDHFDDI---------GPSVVMASPGMMQSGLS 1130
+ ++K K PF + + H+ I P VV ++ G
Sbjct: 240 WLCHNKQTKVYLPEPPFPHAELIQTNKLKHYPSIHGDFSNDFRQPCVVFTGHPSLRFGDV 299
Query: 1131 RELFESWCTDKRNGVIIAGYCVEGTLAKHIMSEPE-EITTMSGQKLPLKMSVDYISFSAH 1307
E W N V I +EP+ PL M Y
Sbjct: 300 VHFMELWGKSSLNTV--------------IFTEPDFSYLEALAPYQPLAMKCIYCPIDTR 345
Query: 1308 TDYQQTSEFIRALKPPHVI 1364
++ Q S+ ++ ++P HV+
Sbjct: 346 LNFIQVSKLLKEVQPLHVV 364
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 38,003,454
Number of extensions: 999134
Number of successful extensions: 2818
Number of sequences better than 1.0e-05: 6
Number of HSP's gapped: 2809
Number of HSP's successfully gapped: 7
Length of query: 520
Length of database: 11,343,932
Length adjustment: 103
Effective length of query: 417
Effective length of database: 8,779,541
Effective search space: 3661068597
Effective search space used: 3661068597
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003876
(1560 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr03 357 1e-95
>Sscrofa_Chr03
|| Length = 144787322
Score = 357 bits (180), Expect = 1e-95
Identities = 180/180 (100%)
Strand = Plus / Minus
Query: 459 agtaatatatccgctgacgacatgctgtataccgagacagacttggaagagagcatggac 518
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 135166180 agtaatatatccgctgacgacatgctgtataccgagacagacttggaagagagcatggac 135166121
Query: 519 aaaattgaaaccatcaacttccacgaagtgaaggaggtggccggaatcaagttttggtgc 578
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 135166120 aaaattgaaaccatcaacttccacgaagtgaaggaggtggccggaatcaagttttggtgc 135166061
Query: 579 taccacgccggccacgtgctgggagctgccatgttcatgattgagatcgcaggcgtcaag 638
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 135166060 taccacgccggccacgtgctgggagctgccatgttcatgattgagatcgcaggcgtcaag 135166001
Score = 353 bits (178), Expect = 2e-94
Identities = 178/178 (100%)
Strand = Plus / Minus
Query: 878 agatgagtactggcagaatcacccagaactccacgacattccaatatactacgcctcctc 937
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 135157836 agatgagtactggcagaatcacccagaactccacgacattccaatatactacgcctcctc 135157777
Query: 938 tctggccaagaagtgtatggcggtgtaccagacgtatgtcaacgccatgaacgacaaaat 997
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 135157776 tctggccaagaagtgtatggcggtgtaccagacgtatgtcaacgccatgaacgacaaaat 135157717
Query: 998 ccgcaagcagatcaacatcaacaacccctttgttttcaagcacattagtaaccttaag 1055
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 135157716 ccgcaagcagatcaacatcaacaacccctttgttttcaagcacattagtaaccttaag 135157659
Score = 327 bits (165), Expect = 1e-86
Identities = 168/169 (99%)
Strand = Plus / Minus
Query: 1 tcccggacgttgtggcctcggtgaatgaggttcttccttctttggttccttctggcttcc 60
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 135174118 tcccggaagttgtggcctcggtgaatgaggttcttccttctttggttccttctggcttcc 135174059
Query: 61 aatttagatagactcccgcgacctgttcctcttcctggcgtcgcctccacacttctgaga 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 135174058 aatttagatagactcccgcgacctgttcctcttcctggcgtcgcctccacacttctgaga 135173999
Query: 121 tgtctgcgattcctgcagaggagagtgaccagctgctgatccgacccct 169
|||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 135173998 tgtctgcgattcctgcagaggagagtgaccagctgctgatccgacccct 135173950
Score = 319 bits (161), Expect = 3e-84
Identities = 161/161 (100%)
Strand = Plus / Minus
Query: 1054 agagcatggatcatttcgatgacattggccccagcgtcgtaatggcctccccaggcatga 1113
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 135156425 agagcatggatcatttcgatgacattggccccagcgtcgtaatggcctccccaggcatga 135156366
Query: 1114 tgcagagcggcttatccagagagctcttcgaaagctggtgcaccgataagaggaatggcg 1173
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 135156365 tgcagagcggcttatccagagagctcttcgaaagctggtgcaccgataagaggaatggcg 135156306
Query: 1174 tcattatagccggatactgtgtggaggggacgctcgccaag 1214
|||||||||||||||||||||||||||||||||||||||||
Sbjct: 135156305 tcattatagccggatactgtgtggaggggacgctcgccaag 135156265
Score = 299 bits (151), Expect = 2e-78
Identities = 153/154 (99%)
Strand = Plus / Minus
Query: 1361 gattttagtccacggagaacagaacgaaatggccaggttgaaagcagccctgattcgaga 1420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 135151622 gattttagtccacggagaacagaacgaaatggccaggttgaaagcagccctgattcgaga 135151563
Query: 1421 atatgaagacnatgacgaggtgcacatagaggttcacaatccccggaatacggaagcagt 1480
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 135151562 atatgaagacaatgacgaggtgcacatagaggttcacaatccccggaatacggaagcagt 135151503
Query: 1481 gaccttgaacttccggggcgaaaaactagctaag 1514
||||||||||||||||||||||||||||||||||
Sbjct: 135151502 gaccttgaacttccggggcgaaaaactagctaag 135151469
Score = 299 bits (151), Expect = 2e-78
Identities = 151/151 (100%)
Strand = Plus / Minus
Query: 729 gaatctacttacgggacccacatccatgagaagcgagaagagcgagaagcgagattctgc 788
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 135162231 gaatctacttacgggacccacatccatgagaagcgagaagagcgagaagcgagattctgc 135162172
Query: 789 aacaccgttcatgatattgtgaacagagggggcagaggcctcatccctgtctttgctctt 848
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 135162171 aacaccgttcatgatattgtgaacagagggggcagaggcctcatccctgtctttgctctt 135162112
Query: 849 ggaagggcccaggagcttctcctgattttag 879
|||||||||||||||||||||||||||||||
Sbjct: 135162111 ggaagggcccaggagcttctcctgattttag 135162081
Score = 295 bits (149), Expect = 4e-77
Identities = 149/149 (100%)
Strand = Plus / Minus
Query: 1213 agcatatcatgtctgaaccggaagaaatcactaccatgtctggacagaagctgccgctga 1272
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 135154977 agcatatcatgtctgaaccggaagaaatcactaccatgtctggacagaagctgccgctga 135154918
Query: 1273 agatgtctgtcgattacatctctttctctgctcacacggactaccagcaaaccagtgaat 1332
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 135154917 agatgtctgtcgattacatctctttctctgctcacacggactaccagcaaaccagtgaat 135154858
Query: 1333 tcattcgtgctttgaaaccgcctcacgtg 1361
|||||||||||||||||||||||||||||
Sbjct: 135154857 tcattcgtgctttgaaaccgcctcacgtg 135154829
Score = 256 bits (129), Expect = 3e-65
Identities = 129/129 (100%)
Strand = Plus / Minus
Query: 332 tttccacttggatcactgtggagctttgccctggtttctgcagaagacgagtttcaaagg 391
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 135167280 tttccacttggatcactgtggagctttgccctggtttctgcagaagacgagtttcaaagg 135167221
Query: 392 aagaacttttatgacacatgccaccaaggctatttacagatggctgctttcagattatgt 451
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 135167220 aagaacttttatgacacatgccaccaaggctatttacagatggctgctttcagattatgt 135167161
Query: 452 caaagtgag 460
|||||||||
Sbjct: 135167160 caaagtgag 135167152
Score = 196 bits (99), Expect = 3e-47
Identities = 99/99 (100%)
Strand = Plus / Minus
Query: 233 gctggactgtgggatccaccctggcctggaaggaatggatgctcttccttatatcgattt 292
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 135167967 gctggactgtgggatccaccctggcctggaaggaatggatgctcttccttatatcgattt 135167908
Query: 293 aattgacccagctgagatcgatctcctgctcattagtca 331
|||||||||||||||||||||||||||||||||||||||
Sbjct: 135167907 aattgacccagctgagatcgatctcctgctcattagtca 135167869
Score = 184 bits (93), Expect = 1e-43
Identities = 93/93 (100%)
Strand = Plus / Minus
Query: 637 agcttttgtatacaggtgatttctcaagacaagaagatagacacttaatggcagctgaaa 696
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 135164145 agcttttgtatacaggtgatttctcaagacaagaagatagacacttaatggcagctgaaa 135164086
Query: 697 ttcctaacattaaacccgatattcttatcatcg 729
|||||||||||||||||||||||||||||||||
Sbjct: 135164085 ttcctaacattaaacccgatattcttatcatcg 135164053
Score = 127 bits (64), Expect = 2e-26
Identities = 64/64 (100%)
Strand = Plus / Minus
Query: 170 tggcgctgggcaagaagtgggaagatcatgtattattctggagttcaaaggaagaaagat 229
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 135169366 tggcgctgggcaagaagtgggaagatcatgtattattctggagttcaaaggaagaaagat 135169307
Query: 230 aatg 233
||||
Sbjct: 135169306 aatg 135169303
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 42,984,913
Number of extensions: 215
Number of successful extensions: 215
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 215
Number of HSP's successfully gapped: 11
Length of query: 1560
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1539
Effective length of database: 2,808,413,156
Effective search space: 4322147847084
Effective search space used: 4322147847084
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)