Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003878
(991 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001069289.1| alanine--glyoxylate aminotransferase 2, mito... 532 e-151
Alignment gi|NP_001015605.1| alanine--glyoxylate aminotransferase 2-like ... 109 3e-24
Alignment gi|NP_001179828.1| alanine--glyoxylate aminotransferase 2-like ... 106 3e-23
Alignment gi|XP_002689073.1| PREDICTED: alanine-glyoxylate aminotransfera... 106 3e-23
Alignment gi|NP_001029412.1| ornithine aminotransferase, mitochondrial pr... 68 1e-11
>ref|NP_001069289.1| alanine--glyoxylate aminotransferase 2, mitochondrial [Bos taurus].
Length = 514
Score = 532 bits (1370), Expect = e-151
Identities = 254/305 (83%), Positives = 272/305 (89%), Gaps = 1/305 (0%)
Frame = +1
Query: 76 MTVAWRHLLRALHLQTLSPRTPKAGPSLNG-AFWTSVTKLGLHTKPIMPPCDFTPERYQS 252
MT AW HLLR+LHL+TLS PK SL AFWTSVT+ GLHTKP MPPCDFTPERYQS
Sbjct: 1 MTGAWGHLLRSLHLKTLSLWIPKTCFSLKARAFWTSVTRCGLHTKPSMPPCDFTPERYQS 60
Query: 253 IAYSRVLDIHKQHLSPVQTAYFPEPLLLHQGHMEWLFDYEGNRYLDFFSGIVTVSVGHCH 432
+AYSRVL+IHKQHLSPV TAYFPEPLLLHQGH+EWLFD+EGNRYLDFFSGIVTVSVGHCH
Sbjct: 61 LAYSRVLEIHKQHLSPVHTAYFPEPLLLHQGHVEWLFDHEGNRYLDFFSGIVTVSVGHCH 120
Query: 433 PKLNAAAQTQLGRLWHTSPVFFHPPIHEYAEKLSALLPEPLKVIFLVNSGSEANDLAMLM 612
PK+NAAAQ QLGRLWHTS VFFHP IHEYAEKLSALLPEPLKV+FLVNSGSEANDLAMLM
Sbjct: 121 PKVNAAAQRQLGRLWHTSSVFFHPLIHEYAEKLSALLPEPLKVVFLVNSGSEANDLAMLM 180
Query: 613 ARAHTNNTDIISFRGAYHGCSPYTIGLTNVGFYKMRIPTGMGCRSTMCPDVFRGPWGGSH 792
ARAH+N+TDIISFRGAYHGCSPYT+GLTNVG YKM +P GMGC+ TMCPD+F GPWGGSH
Sbjct: 181 ARAHSNSTDIISFRGAYHGCSPYTLGLTNVGIYKMDLPHGMGCQPTMCPDIFHGPWGGSH 240
Query: 793 CRDSPVQTTRECSCAPDCCQAKDQYIEQFKDTLSTSVAKSIAGFFAEPFKG*VEWFSTRK 972
CRDSPVQT R+CSCAPDCCQAKDQYIEQFKDTLSTSVAKSIAGFFAEP +G K
Sbjct: 241 CRDSPVQTIRKCSCAPDCCQAKDQYIEQFKDTLSTSVAKSIAGFFAEPIQGVNGVVQYPK 300
Query: 973 GF*KK 987
GF K+
Sbjct: 301 GFLKE 305
>ref|NP_001015605.1| alanine--glyoxylate aminotransferase 2-like 1 [Bos taurus].
Length = 497
Score = 109 bits (273), Expect = 3e-24
Identities = 62/175 (35%), Positives = 98/175 (56%), Gaps = 1/175 (0%)
Frame = +1
Query: 271 LDIHKQHLSPVQTAYFP-EPLLLHQGHMEWLFDYEGNRYLDFFSGIVTVSVGHCHPKLNA 447
L + ++H+ P +F +P+ + + +++FD +G++YLD + + VGHCHP++
Sbjct: 11 LALRRKHIGPSCKVFFAADPIKIVRAQRQYMFDEKGDQYLDCINNVA--HVGHCHPEVVK 68
Query: 448 AAQTQLGRLWHTSPVFFHPPIHEYAEKLSALLPEPLKVIFLVNSGSEANDLAMLMARAHT 627
AAQ Q+ L +T+ F H I EYA++LSA LP+ L V + NSGSEANDLA+ +AR
Sbjct: 69 AAQKQM-ELLNTNSRFLHDNIVEYAKRLSATLPDRLSVCYFTNSGSEANDLALRLARQFR 127
Query: 628 NNTDIISFRGAYHGCSPYTIGLTNVGFYKMRIPTGMGCRSTMCPDVFRGPWGGSH 792
+ D+I+ AYHG I ++ F K + PD +RG + H
Sbjct: 128 GHQDVITLDHAYHGHLSSLIEISPYKFQKGKDVKKEFVHVAPAPDTYRGKYREDH 182
>ref|NP_001179828.1| alanine--glyoxylate aminotransferase 2-like 2 [Bos taurus].
Length = 450
Score = 106 bits (265), Expect = 3e-23
Identities = 75/227 (33%), Positives = 115/227 (50%), Gaps = 6/227 (2%)
Frame = +1
Query: 271 LDIHKQHLSPVQTAYFPE-PLLLHQGHMEWLFDYEGNRYLDFFSGIVTVSVGHCHPKLNA 447
L + ++ LS +FPE P+ + +G ++++D +G Y+D + + VGHCHP +
Sbjct: 12 LALRRRLLSNSCRLFFPEDPIKIVRGQGQYMYDEQGAEYIDCINNVA--HVGHCHPLVVQ 69
Query: 448 AAQTQLGRLWHTSPVFFHPPIHEYAEKLSALLPEPLKVIFLVNSGSEANDLAMLMARAHT 627
AA Q ++ +T+ + H I +YA++LS LPE L V + +NSGSEANDLA+ +AR +T
Sbjct: 70 AAHEQ-NQVLNTNSRYLHDNIVDYAQRLSETLPEKLCVFYFLNSGSEANDLALRLARQYT 128
Query: 628 NNTDIISFRGAYHGCSPYTIGLTNVGFYKMRIPTGM--GCRSTMCPDVFRGPWGGSHCRD 801
+ D++ AYHG + L ++ YK R G PD +RGP+ H +
Sbjct: 129 GHWDVVVLDHAYHG---HLSSLIDISPYKFRDLDGQKEWVHVAPLPDTYRGPYREDH-PN 184
Query: 802 SPVQTTRECSCAPDCCQAKDQYIEQFKDTLSTSVAKSI---AGFFAE 933
V E Q K + I F SV I AG+F E
Sbjct: 185 PAVAYASEVKRVVSSAQEKGRKIAAFFAESLPSVGGQIIPPAGYFPE 231
>ref|XP_002689073.1| PREDICTED: alanine-glyoxylate aminotransferase 2-like 2 [Bos
taurus].
Length = 450
Score = 106 bits (265), Expect = 3e-23
Identities = 75/227 (33%), Positives = 115/227 (50%), Gaps = 6/227 (2%)
Frame = +1
Query: 271 LDIHKQHLSPVQTAYFPE-PLLLHQGHMEWLFDYEGNRYLDFFSGIVTVSVGHCHPKLNA 447
L + ++ LS +FPE P+ + +G ++++D +G Y+D + + VGHCHP +
Sbjct: 12 LALRRRLLSNSCRLFFPEDPIKIVRGQGQYMYDEQGAEYIDCINNVA--HVGHCHPLVVQ 69
Query: 448 AAQTQLGRLWHTSPVFFHPPIHEYAEKLSALLPEPLKVIFLVNSGSEANDLAMLMARAHT 627
AA Q ++ +T+ + H I +YA++LS LPE L V + +NSGSEANDLA+ +AR +T
Sbjct: 70 AAHEQ-NQVLNTNSRYLHDNIVDYAQRLSETLPEKLCVFYFLNSGSEANDLALRLARQYT 128
Query: 628 NNTDIISFRGAYHGCSPYTIGLTNVGFYKMRIPTGM--GCRSTMCPDVFRGPWGGSHCRD 801
+ D++ AYHG + L ++ YK R G PD +RGP+ H +
Sbjct: 129 GHWDVVVLDHAYHG---HLSSLIDISPYKFRDLDGQKEWVHVAPLPDTYRGPYREDH-PN 184
Query: 802 SPVQTTRECSCAPDCCQAKDQYIEQFKDTLSTSVAKSI---AGFFAE 933
V E Q K + I F SV I AG+F E
Sbjct: 185 PAVAYASEVKRVVSSAQEKGRKIAAFFAESLPSVGGQIIPPAGYFPE 231
>ref|NP_001029412.1| ornithine aminotransferase, mitochondrial precursor [Bos taurus].
Length = 439
Score = 67.8 bits (164), Expect = 1e-11
Identities = 36/102 (35%), Positives = 58/102 (56%)
Frame = +1
Query: 313 YFPEPLLLHQGHMEWLFDYEGNRYLDFFSGIVTVSVGHCHPKLNAAAQTQLGRLWHTSPV 492
Y P P+ L +G +++D EG +Y DF S V+ GHCHPK+ A ++Q+ +L TS
Sbjct: 55 YHPLPVALERGKGIYVWDVEGRKYFDFLSAYSAVNQGHCHPKIVDALKSQVDKLTLTSRA 114
Query: 493 FFHPPIHEYAEKLSALLPEPLKVIFLVNSGSEANDLAMLMAR 618
F++ + EY E ++ L + +N+G EA + A +AR
Sbjct: 115 FYNNVLGEYEEYVTKLF--NYHKVLPMNTGVEAGETACKLAR 154
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 43,554,317
Number of extensions: 1305024
Number of successful extensions: 4463
Number of sequences better than 1.0e-05: 5
Number of HSP's gapped: 4454
Number of HSP's successfully gapped: 5
Length of query: 330
Length of database: 17,681,374
Length adjustment: 103
Effective length of query: 227
Effective length of database: 14,273,310
Effective search space: 3240041370
Effective search space used: 3240041370
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003878
(991 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_855415.1| PREDICTED: similar to alanine-glyoxylate aminot... 482 e-136
Alignment gi|XP_538569.2| PREDICTED: similar to CG8745-PA [Canis familiar... 105 5e-23
Alignment gi|XP_866064.1| PREDICTED: similar to Ornithine aminotransferas... 67 3e-11
Alignment gi|XP_535050.2| PREDICTED: similar to Ornithine aminotransferas... 67 3e-11
>ref|XP_855415.1| PREDICTED: similar to alanine-glyoxylate aminotransferase 2
precursor [Canis familiaris].
Length = 520
Score = 482 bits (1241), Expect = e-136
Identities = 225/274 (82%), Positives = 246/274 (89%)
Frame = +1
Query: 166 AFWTSVTKLGLHTKPIMPPCDFTPERYQSIAYSRVLDIHKQHLSPVQTAYFPEPLLLHQG 345
AFWTSVTKLGLHTKP MPPCDFTPE+YQS+ Y RVL+IHKQHLSP+ TAYFP+PLLLHQG
Sbjct: 38 AFWTSVTKLGLHTKPRMPPCDFTPEKYQSLTYERVLEIHKQHLSPILTAYFPKPLLLHQG 97
Query: 346 HMEWLFDYEGNRYLDFFSGIVTVSVGHCHPKLNAAAQTQLGRLWHTSPVFFHPPIHEYAE 525
H EWLFDYEGNRYLDFFSGIVTVSVGHCHPK+NA AQ QLGRLWHTS +FFHPPIHE+AE
Sbjct: 98 HKEWLFDYEGNRYLDFFSGIVTVSVGHCHPKVNAVAQKQLGRLWHTSTLFFHPPIHEFAE 157
Query: 526 KLSALLPEPLKVIFLVNSGSEANDLAMLMARAHTNNTDIISFRGAYHGCSPYTIGLTNVG 705
KLSALLPEPLKVIFLVNSGSEANDLAMLMARAH+ +TDIISFRG YHG S T+GLTNVG
Sbjct: 158 KLSALLPEPLKVIFLVNSGSEANDLAMLMARAHSKSTDIISFRGGYHGGSSSTLGLTNVG 217
Query: 706 FYKMRIPTGMGCRSTMCPDVFRGPWGGSHCRDSPVQTTRECSCAPDCCQAKDQYIEQFKD 885
+K + +G+GC+STMCPDVFRGPWGGSHCRDSPVQT R+CSCAPDCCQAKDQYIEQFKD
Sbjct: 218 PFKTELSSGLGCQSTMCPDVFRGPWGGSHCRDSPVQTIRKCSCAPDCCQAKDQYIEQFKD 277
Query: 886 TLSTSVAKSIAGFFAEPFKG*VEWFSTRKGF*KK 987
TL++SVAKSIAGFFAEP +G KGF K+
Sbjct: 278 TLNSSVAKSIAGFFAEPIQGVNGVVQYPKGFLKE 311
>ref|XP_538569.2| PREDICTED: similar to CG8745-PA [Canis familiaris].
Length = 450
Score = 105 bits (263), Expect = 5e-23
Identities = 77/227 (33%), Positives = 114/227 (50%), Gaps = 6/227 (2%)
Frame = +1
Query: 271 LDIHKQHLSPVQTAYFPE-PLLLHQGHMEWLFDYEGNRYLDFFSGIVTVSVGHCHPKLNA 447
L + ++ LS ++PE P+ + +G ++L+D +G YLD + + VGHCHP +
Sbjct: 12 LALRRRLLSNSCRLFYPEDPIKIVRGQGQYLYDEQGAEYLDCINNVA--HVGHCHPLVVQ 69
Query: 448 AAQTQLGRLWHTSPVFFHPPIHEYAEKLSALLPEPLKVIFLVNSGSEANDLAMLMARAHT 627
AA Q ++ +T+ + H I +YA++LS LPE L V + +NSGSEANDLA+ +AR +T
Sbjct: 70 AAHEQ-NQVLNTNSRYLHDNIVDYAQRLSETLPEKLSVFYFLNSGSEANDLALRLARQYT 128
Query: 628 NNTDIISFRGAYHGCSPYTIGLTNVGFYKMRIPTGM--GCRSTMCPDVFRGPWGGSHCRD 801
+ D++ AYHG + L ++ YK R G PD +RG + H D
Sbjct: 129 GHWDVVVLDHAYHG---HLSSLIDISPYKFRDLDGQKEWVHVAPLPDTYRGLYQEDH-PD 184
Query: 802 SPVQTTRECSCAPDCCQAKDQYIEQFKDTLSTSVAKSI---AGFFAE 933
E Q K + I F SVA I AGFF E
Sbjct: 185 PAGAYANEVKRVVSSVQEKGRKIAAFFVESLPSVAGQIIPPAGFFQE 231
>ref|XP_866064.1| PREDICTED: similar to Ornithine aminotransferase, mitochondrial
precursor (Ornithine--oxo-acid aminotransferase) isoform
2 [Canis familiaris].
Length = 440
Score = 66.6 bits (161), Expect = 3e-11
Identities = 36/102 (35%), Positives = 56/102 (54%)
Frame = +1
Query: 313 YFPEPLLLHQGHMEWLFDYEGNRYLDFFSGIVTVSVGHCHPKLNAAAQTQLGRLWHTSPV 492
Y P P+ L +G +++D EG +Y DF S V+ GHCHPK+ A + Q +L TS
Sbjct: 56 YHPLPVALERGKGIYVWDVEGRKYFDFLSAYSAVNQGHCHPKIVNALKNQADKLTLTSRA 115
Query: 493 FFHPPIHEYAEKLSALLPEPLKVIFLVNSGSEANDLAMLMAR 618
F++ + EY E ++ L + +N+G EA + A +AR
Sbjct: 116 FYNNVLGEYEEYVTKLF--NYHKVLPMNTGVEAGETACKLAR 155
>ref|XP_535050.2| PREDICTED: similar to Ornithine aminotransferase, mitochondrial
precursor (Ornithine--oxo-acid aminotransferase) isoform
1 [Canis familiaris].
Length = 440
Score = 66.6 bits (161), Expect = 3e-11
Identities = 36/102 (35%), Positives = 56/102 (54%)
Frame = +1
Query: 313 YFPEPLLLHQGHMEWLFDYEGNRYLDFFSGIVTVSVGHCHPKLNAAAQTQLGRLWHTSPV 492
Y P P+ L +G +++D EG +Y DF S V+ GHCHPK+ A + Q +L TS
Sbjct: 56 YHPLPVALERGKGIYVWDVEGRKYFDFLSAYSAVNQGHCHPKIVNALKNQADKLTLTSRA 115
Query: 493 FFHPPIHEYAEKLSALLPEPLKVIFLVNSGSEANDLAMLMAR 618
F++ + EY E ++ L + +N+G EA + A +AR
Sbjct: 116 FYNNVLGEYEEYVTKLF--NYHKVLPMNTGVEAGETACKLAR 155
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 45,269,359
Number of extensions: 1333415
Number of successful extensions: 4332
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 4327
Number of HSP's successfully gapped: 4
Length of query: 330
Length of database: 18,874,504
Length adjustment: 103
Effective length of query: 227
Effective length of database: 15,440,896
Effective search space: 3505083392
Effective search space used: 3505083392
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003878
(991 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_114106.1| alanine--glyoxylate aminotransferase 2, mitocho... 506 e-143
Alignment gi|NP_112569.2| alanine--glyoxylate aminotransferase 2-like 1 i... 107 1e-23
Alignment gi|NP_699204.1| alanine--glyoxylate aminotransferase 2-like 2 [... 103 2e-22
Alignment gi|NP_001140062.1| alanine--glyoxylate aminotransferase 2-like ... 92 1e-18
Alignment gi|NP_001140099.1| alanine--glyoxylate aminotransferase 2-like ... 86 5e-17
Alignment gi|NP_000265.1| ornithine aminotransferase, mitochondrial isofo... 69 5e-12
>ref|NP_114106.1| alanine--glyoxylate aminotransferase 2, mitochondrial precursor
[Homo sapiens].
Length = 514
Score = 506 bits (1303), Expect = e-143
Identities = 243/305 (79%), Positives = 264/305 (86%), Gaps = 1/305 (0%)
Frame = +1
Query: 76 MTVAWRHLLRALHLQTLSPRTPKAGPSLN-GAFWTSVTKLGLHTKPIMPPCDFTPERYQS 252
MT+ WRHLLR L L T +PR + P L+ G TSVTKL LHTKP MPPCDF PERYQS
Sbjct: 1 MTLIWRHLLRPLCLVTSAPRILEMHPFLSLGTSRTSVTKLSLHTKPRMPPCDFMPERYQS 60
Query: 253 IAYSRVLDIHKQHLSPVQTAYFPEPLLLHQGHMEWLFDYEGNRYLDFFSGIVTVSVGHCH 432
+ Y+RVL+IHK+HLSPV TAYF +PLLLHQGHMEWLFD EG+RYLDFFSGIVTVSVGHCH
Sbjct: 61 LGYNRVLEIHKEHLSPVVTAYFQKPLLLHQGHMEWLFDAEGSRYLDFFSGIVTVSVGHCH 120
Query: 433 PKLNAAAQTQLGRLWHTSPVFFHPPIHEYAEKLSALLPEPLKVIFLVNSGSEANDLAMLM 612
PK+NA AQ QLGRLWHTS VFFHPP+HEYAEKL+ALLPEPLKVIFLVNSGSEAN+LAMLM
Sbjct: 121 PKVNAVAQKQLGRLWHTSTVFFHPPMHEYAEKLAALLPEPLKVIFLVNSGSEANELAMLM 180
Query: 613 ARAHTNNTDIISFRGAYHGCSPYTIGLTNVGFYKMRIPTGMGCRSTMCPDVFRGPWGGSH 792
ARAH+NN DIISFRGAYHGCSPYT+GLTNVG YKM +P G GC+ TMCPDVFRGPWGGSH
Sbjct: 181 ARAHSNNIDIISFRGAYHGCSPYTLGLTNVGTYKMELPGGTGCQPTMCPDVFRGPWGGSH 240
Query: 793 CRDSPVQTTRECSCAPDCCQAKDQYIEQFKDTLSTSVAKSIAGFFAEPFKG*VEWFSTRK 972
CRDSPVQT R+CSCAPDCCQAKDQYIEQFKDTLSTSVAKSIAGFFAEP +G K
Sbjct: 241 CRDSPVQTIRKCSCAPDCCQAKDQYIEQFKDTLSTSVAKSIAGFFAEPIQGVNGVVQYPK 300
Query: 973 GF*KK 987
GF K+
Sbjct: 301 GFLKE 305
>ref|NP_112569.2| alanine--glyoxylate aminotransferase 2-like 1 isoform 1 [Homo
sapiens].
Length = 499
Score = 107 bits (268), Expect = 1e-23
Identities = 63/175 (36%), Positives = 94/175 (53%), Gaps = 1/175 (0%)
Frame = +1
Query: 271 LDIHKQHLSPVQTAYFP-EPLLLHQGHMEWLFDYEGNRYLDFFSGIVTVSVGHCHPKLNA 447
L + K+H+ P +F +P+ + + +++FD G +YLD + + VGHCHP +
Sbjct: 11 LGLRKKHIGPSCKVFFASDPIKIVRAQRQYMFDENGEQYLDCINNVA--HVGHCHPGVVK 68
Query: 448 AAQTQLGRLWHTSPVFFHPPIHEYAEKLSALLPEPLKVIFLVNSGSEANDLAMLMARAHT 627
AA Q+ L +T+ F H I EYA++LSA LPE L V + NSGSEANDLA+ +AR
Sbjct: 69 AALKQM-ELLNTNSRFLHDNIVEYAKRLSATLPEKLSVCYFTNSGSEANDLALRLARQFR 127
Query: 628 NNTDIISFRGAYHGCSPYTIGLTNVGFYKMRIPTGMGCRSTMCPDVFRGPWGGSH 792
+ D+I+ AYHG I ++ F K + PD +RG + H
Sbjct: 128 GHQDVITLDHAYHGHLSSLIEISPYKFQKGKDVKKEFVHVAPTPDTYRGKYREDH 182
>ref|NP_699204.1| alanine--glyoxylate aminotransferase 2-like 2 [Homo sapiens].
Length = 450
Score = 103 bits (257), Expect = 2e-22
Identities = 73/226 (32%), Positives = 115/226 (50%), Gaps = 5/226 (2%)
Frame = +1
Query: 271 LDIHKQHLSPVQTAYFPE-PLLLHQGHMEWLFDYEGNRYLDFFSGIVTVSVGHCHPKLNA 447
L + ++ +S +FPE P+ + + ++++D +G Y+D S + VGHCHP +
Sbjct: 12 LALRQRLISSSCRLFFPEDPVKIVRAQGQYMYDEQGAEYIDCISNVA--HVGHCHPLVVQ 69
Query: 448 AAQTQLGRLWHTSPVFFHPPIHEYAEKLSALLPEPLKVIFLVNSGSEANDLAMLMARAHT 627
AA Q ++ +T+ + H I +YA++LS LPE L V + +NSGSEANDLA+ +AR +T
Sbjct: 70 AAHEQ-NQVLNTNSRYLHDNIVDYAQRLSETLPEQLCVFYFLNSGSEANDLALRLARHYT 128
Query: 628 NNTDIISFRGAYHGCSPYTIGLTNVGFYKMRIPTGM--GCRSTMCPDVFRGPWGGSHCRD 801
+ D++ AYHG + L ++ YK R G PD +RGP+ H
Sbjct: 129 GHQDVVVLDHAYHG---HLSSLIDISPYKFRNLDGQKEWVHVAPLPDTYRGPYREDH--- 182
Query: 802 SPVQTTRECSCAPDCCQAKDQYIEQFKDTLSTSVAK--SIAGFFAE 933
P+ A Y + K +S++ K IA FFAE
Sbjct: 183 ------------PNPAMA---YANEVKRVVSSAQEKGRKIAAFFAE 213
>ref|NP_001140062.1| alanine--glyoxylate aminotransferase 2-like 1 isoform 2 [Homo
sapiens].
Length = 493
Score = 91.7 bits (226), Expect = 1e-18
Identities = 57/175 (32%), Positives = 88/175 (50%), Gaps = 1/175 (0%)
Frame = +1
Query: 271 LDIHKQHLSPVQTAYFP-EPLLLHQGHMEWLFDYEGNRYLDFFSGIVTVSVGHCHPKLNA 447
L + K+H+ P +F +P+ + + +++FD G +YLD + + H + A
Sbjct: 11 LGLRKKHIGPSCKVFFASDPIKIVRAQRQYMFDENGEQYLDCINNVA-------HGVVKA 63
Query: 448 AAQTQLGRLWHTSPVFFHPPIHEYAEKLSALLPEPLKVIFLVNSGSEANDLAMLMARAHT 627
A + L +T+ F H I EYA++LSA LPE L V + NSGSEANDLA+ +AR
Sbjct: 64 ALKQM--ELLNTNSRFLHDNIVEYAKRLSATLPEKLSVCYFTNSGSEANDLALRLARQFR 121
Query: 628 NNTDIISFRGAYHGCSPYTIGLTNVGFYKMRIPTGMGCRSTMCPDVFRGPWGGSH 792
+ D+I+ AYHG I ++ F K + PD +RG + H
Sbjct: 122 GHQDVITLDHAYHGHLSSLIEISPYKFQKGKDVKKEFVHVAPTPDTYRGKYREDH 176
>ref|NP_001140099.1| alanine--glyoxylate aminotransferase 2-like 1 isoform 3 [Homo
sapiens].
Length = 441
Score = 85.9 bits (211), Expect = 5e-17
Identities = 50/125 (40%), Positives = 68/125 (54%)
Frame = +1
Query: 418 VGHCHPKLNAAAQTQLGRLWHTSPVFFHPPIHEYAEKLSALLPEPLKVIFLVNSGSEAND 597
+GHCHP + AA Q+ L +T+ F H I EYA++LSA LPE L V + NSGSEAND
Sbjct: 1 MGHCHPGVVKAALKQM-ELLNTNSRFLHDNIVEYAKRLSATLPEKLSVCYFTNSGSEAND 59
Query: 598 LAMLMARAHTNNTDIISFRGAYHGCSPYTIGLTNVGFYKMRIPTGMGCRSTMCPDVFRGP 777
LA+ +AR + D+I+ AYHG I ++ F K + PD +RG
Sbjct: 60 LALRLARQFRGHQDVITLDHAYHGHLSSLIEISPYKFQKGKDVKKEFVHVAPTPDTYRGK 119
Query: 778 WGGSH 792
+ H
Sbjct: 120 YREDH 124
>ref|NP_000265.1| ornithine aminotransferase, mitochondrial isoform 1 precursor [Homo
sapiens].
Length = 439
Score = 69.3 bits (168), Expect = 5e-12
Identities = 37/102 (36%), Positives = 58/102 (56%)
Frame = +1
Query: 313 YFPEPLLLHQGHMEWLFDYEGNRYLDFFSGIVTVSVGHCHPKLNAAAQTQLGRLWHTSPV 492
Y P P+ L +G +L+D EG +Y DF S V+ GHCHPK+ A ++Q+ +L TS
Sbjct: 55 YHPLPVALERGKGIYLWDVEGRKYFDFLSSYSAVNQGHCHPKIVNALKSQVDKLTLTSRA 114
Query: 493 FFHPPIHEYAEKLSALLPEPLKVIFLVNSGSEANDLAMLMAR 618
F++ + EY E ++ L + +N+G EA + A +AR
Sbjct: 115 FYNNVLGEYEEYITKLF--NYHKVLPMNTGVEAGETACKLAR 154
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 44,664,099
Number of extensions: 1324173
Number of successful extensions: 4436
Number of sequences better than 1.0e-05: 6
Number of HSP's gapped: 4425
Number of HSP's successfully gapped: 6
Length of query: 330
Length of database: 18,297,164
Length adjustment: 103
Effective length of query: 227
Effective length of database: 14,901,872
Effective search space: 3382724944
Effective search space used: 3382724944
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003878
(991 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001027021.1| alanine--glyoxylate aminotransferase 2, mito... 466 e-136
Alignment gi|NP_082674.1| alanine--glyoxylate aminotransferase 2-like 2 [... 113 3e-25
Alignment gi|NP_001157059.1| alanine--glyoxylate aminotransferase 2-like ... 105 5e-23
Alignment gi|NP_082183.2| alanine--glyoxylate aminotransferase 2-like 1 [... 105 5e-23
Alignment gi|NP_058674.1| ornithine aminotransferase, mitochondrial precu... 69 4e-12
>ref|NP_001027021.1| alanine--glyoxylate aminotransferase 2, mitochondrial [Mus
musculus].
Length = 541
Score = 466 bits (1199), Expect(2) = e-136
Identities = 228/319 (71%), Positives = 258/319 (80%), Gaps = 29/319 (9%)
Frame = +1
Query: 76 MTVAWRHLLRALHLQTLSPRTPKAGPSLN-GAFWTSVTKLGLHTKPIMPPCDFTPERYQS 252
M++AWR+L + +L+T S R + PSL+ GA +V KL LHTK MPPCDF+PE+YQS
Sbjct: 1 MSLAWRNLQKPFYLET-SLRILQMRPSLSLGASRIAVPKLTLHTKHSMPPCDFSPEKYQS 59
Query: 253 IAYSRVLDIHKQHLSPVQTAYFPEPLLLHQGHMEWLFDYEGNRYLDFFSGIVTVSVGHCH 432
+AYSRVL IHKQHLSPV TAYF +PLLLHQGHMEWLFD EGNRYLDFFSGIVTVSVGHCH
Sbjct: 60 LAYSRVLAIHKQHLSPVDTAYFRKPLLLHQGHMEWLFDSEGNRYLDFFSGIVTVSVGHCH 119
Query: 433 PKLNAAAQTQLGRLWHTSPVFFHPPIHEYAEKLSALLPEPLKVIFLVNSGSEANDLAMLM 612
PK++A A+ Q+ RLWHTS VFFH P+HEYAEKLSALLPEPLKVIFLVNSGSEANDLAM+M
Sbjct: 120 PKVSAVAKKQIDRLWHTSSVFFHSPMHEYAEKLSALLPEPLKVIFLVNSGSEANDLAMVM 179
Query: 613 ARAHTNNTDIISFRGAYHGCSPYTIGLTNVGFYKMRIPTGMGCRSTMCPDVFRGPWGGSH 792
ARAH+N+TDIISFRGAYHGCSPYT+GLTNVG YKM +P G+GC+STMCPDVFRGPWGG H
Sbjct: 180 ARAHSNHTDIISFRGAYHGCSPYTLGLTNVGIYKMEVPGGIGCQSTMCPDVFRGPWGGIH 239
Query: 793 CRDSPVQTTRECSCAP----------------------------DCCQAKDQYIEQFKDT 888
CRDSPVQT R+CSCAP DCCQAK++YIEQFKDT
Sbjct: 240 CRDSPVQTVRDCSCAPGPNGQGGRRECHSNIKCCDLCMCVCFATDCCQAKERYIEQFKDT 299
Query: 889 LSTSVAKSIAGFFAEPFKG 945
L+TSVA SIAGFFAEP +G
Sbjct: 300 LNTSVATSIAGFFAEPIQG 318
Score = 37.4 bits (85), Expect(2) = e-136
Identities = 17/22 (77%), Positives = 18/22 (81%)
Frame = +3
Query: 924 FCRAIQGVSGVVQYPKGFLKEA 989
F IQGV+GVVQYPK FLKEA
Sbjct: 312 FAEPIQGVNGVVQYPKEFLKEA 333
>ref|NP_082674.1| alanine--glyoxylate aminotransferase 2-like 2 [Mus musculus].
Length = 467
Score = 113 bits (282), Expect = 3e-25
Identities = 77/226 (34%), Positives = 117/226 (51%), Gaps = 5/226 (2%)
Frame = +1
Query: 271 LDIHKQHLSPVQTAYFPE-PLLLHQGHMEWLFDYEGNRYLDFFSGIVTVSVGHCHPKLNA 447
LD+ ++ LS +FPE P+ + +G ++L+D +G YLD + + VGHCHP +
Sbjct: 12 LDLRRRLLSSSCRLFFPEDPVKIIRGQGQYLYDEQGREYLDCINNVA--HVGHCHPTVVQ 69
Query: 448 AAQTQLGRLWHTSPVFFHPPIHEYAEKLSALLPEPLKVIFLVNSGSEANDLAMLMARAHT 627
AA Q + +T+ + H I +YA++LS LPE L V + +NSGSEANDLA+ +AR +T
Sbjct: 70 AAHEQ-NLVLNTNSRYLHDNIVDYAQRLSETLPEQLSVFYFLNSGSEANDLALRLARQYT 128
Query: 628 NNTDIISFRGAYHGCSPYTIGLTNVGFYKMRIPTGM--GCRSTMCPDVFRGPWGGSHCRD 801
+ D++ AYHG + L ++ YK R G PD +RGP+ H
Sbjct: 129 GHQDVVVLDHAYHG---HLSSLIDISPYKFRNLGGQKEWVHVAPLPDTYRGPYREDH--- 182
Query: 802 SPVQTTRECSCAPDCCQAKDQYIEQFKDTLSTSVAK--SIAGFFAE 933
P+ +A Y + K +S++ K IA FFAE
Sbjct: 183 ------------PNPAEA---YANEVKHVISSAQQKGRKIAAFFAE 213
>ref|NP_001157059.1| alanine--glyoxylate aminotransferase 2-like 1 [Mus musculus].
Length = 499
Score = 105 bits (262), Expect = 5e-23
Identities = 60/175 (34%), Positives = 96/175 (54%), Gaps = 1/175 (0%)
Frame = +1
Query: 271 LDIHKQHLSPVQTAYFP-EPLLLHQGHMEWLFDYEGNRYLDFFSGIVTVSVGHCHPKLNA 447
L + ++H+ P +F +P+ + + +++FD +G RYLD + + VGHCHP++
Sbjct: 11 LALRERHIGPSCKIFFAADPIKIMRAQGQYMFDEKGERYLDCINNVA--HVGHCHPEVVK 68
Query: 448 AAQTQLGRLWHTSPVFFHPPIHEYAEKLSALLPEPLKVIFLVNSGSEANDLAMLMARAHT 627
AA Q+ L +T+ F H I E+A++L+A LP+ L V + NSGSEANDLA+ +AR
Sbjct: 69 AAAKQM-ELLNTNSRFLHDNIIEFAKRLTATLPQELSVCYFTNSGSEANDLALRLARQFR 127
Query: 628 NNTDIISFRGAYHGCSPYTIGLTNVGFYKMRIPTGMGCRSTMCPDVFRGPWGGSH 792
+ D+I+ AYHG I ++ F K + PD +RG + H
Sbjct: 128 GHQDVITLDHAYHGHLSSLIEISPYKFQKGKDVKRETVHVAPAPDTYRGKYREDH 182
>ref|NP_082183.2| alanine--glyoxylate aminotransferase 2-like 1 [Mus musculus].
Length = 499
Score = 105 bits (262), Expect = 5e-23
Identities = 60/175 (34%), Positives = 96/175 (54%), Gaps = 1/175 (0%)
Frame = +1
Query: 271 LDIHKQHLSPVQTAYFP-EPLLLHQGHMEWLFDYEGNRYLDFFSGIVTVSVGHCHPKLNA 447
L + ++H+ P +F +P+ + + +++FD +G RYLD + + VGHCHP++
Sbjct: 11 LALRERHIGPSCKIFFAADPIKIMRAQGQYMFDEKGERYLDCINNVA--HVGHCHPEVVK 68
Query: 448 AAQTQLGRLWHTSPVFFHPPIHEYAEKLSALLPEPLKVIFLVNSGSEANDLAMLMARAHT 627
AA Q+ L +T+ F H I E+A++L+A LP+ L V + NSGSEANDLA+ +AR
Sbjct: 69 AAAKQM-ELLNTNSRFLHDNIIEFAKRLTATLPQELSVCYFTNSGSEANDLALRLARQFR 127
Query: 628 NNTDIISFRGAYHGCSPYTIGLTNVGFYKMRIPTGMGCRSTMCPDVFRGPWGGSH 792
+ D+I+ AYHG I ++ F K + PD +RG + H
Sbjct: 128 GHQDVITLDHAYHGHLSSLIEISPYKFQKGKDVKRETVHVAPAPDTYRGKYREDH 182
>ref|NP_058674.1| ornithine aminotransferase, mitochondrial precursor [Mus musculus].
Length = 439
Score = 69.3 bits (168), Expect = 4e-12
Identities = 37/102 (36%), Positives = 58/102 (56%)
Frame = +1
Query: 313 YFPEPLLLHQGHMEWLFDYEGNRYLDFFSGIVTVSVGHCHPKLNAAAQTQLGRLWHTSPV 492
Y P P+ L +G +++D EG +Y DF S VS GHCHPK+ A ++Q+ +L TS
Sbjct: 55 YHPLPVALERGKGIYMWDVEGRQYFDFLSAYGAVSQGHCHPKIIDAMKSQVDKLTLTSRA 114
Query: 493 FFHPPIHEYAEKLSALLPEPLKVIFLVNSGSEANDLAMLMAR 618
F++ + EY E ++ L + +N+G EA + A +AR
Sbjct: 115 FYNNVLGEYEEYITKLF--NYNKVLPMNTGVEAGETACKLAR 154
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 37,950,092
Number of extensions: 1119098
Number of successful extensions: 3608
Number of sequences better than 1.0e-05: 5
Number of HSP's gapped: 3594
Number of HSP's successfully gapped: 6
Length of query: 330
Length of database: 15,617,559
Length adjustment: 102
Effective length of query: 228
Effective length of database: 12,553,887
Effective search space: 2862286236
Effective search space used: 2862286236
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003878
(991 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_003133929.2| PREDICTED: alanine--glyoxylate aminotransfer... 346 1e-95
Alignment gi|XP_003129316.2| PREDICTED: alanine--glyoxylate aminotransfer... 109 2e-24
Alignment gi|XP_003123702.2| PREDICTED: alanine--glyoxylate aminotransfer... 105 5e-23
Alignment gi|NP_001172070.1| ornithine aminotransferase, mitochondrial [S... 69 4e-12
>ref|XP_003133929.2| PREDICTED: alanine--glyoxylate aminotransferase 2,
mitochondrial-like [Sus scrofa].
Length = 354
Score = 346 bits (888), Expect = 1e-95
Identities = 162/162 (100%), Positives = 162/162 (100%)
Frame = +1
Query: 76 MTVAWRHLLRALHLQTLSPRTPKAGPSLNGAFWTSVTKLGLHTKPIMPPCDFTPERYQSI 255
MTVAWRHLLRALHLQTLSPRTPKAGPSLNGAFWTSVTKLGLHTKPIMPPCDFTPERYQSI
Sbjct: 1 MTVAWRHLLRALHLQTLSPRTPKAGPSLNGAFWTSVTKLGLHTKPIMPPCDFTPERYQSI 60
Query: 256 AYSRVLDIHKQHLSPVQTAYFPEPLLLHQGHMEWLFDYEGNRYLDFFSGIVTVSVGHCHP 435
AYSRVLDIHKQHLSPVQTAYFPEPLLLHQGHMEWLFDYEGNRYLDFFSGIVTVSVGHCHP
Sbjct: 61 AYSRVLDIHKQHLSPVQTAYFPEPLLLHQGHMEWLFDYEGNRYLDFFSGIVTVSVGHCHP 120
Query: 436 KLNAAAQTQLGRLWHTSPVFFHPPIHEYAEKLSALLPEPLKV 561
KLNAAAQTQLGRLWHTSPVFFHPPIHEYAEKLSALLPEPLKV
Sbjct: 121 KLNAAAQTQLGRLWHTSPVFFHPPIHEYAEKLSALLPEPLKV 162
>ref|XP_003129316.2| PREDICTED: alanine--glyoxylate aminotransferase 2-like 1-like,
partial [Sus scrofa].
Length = 309
Score = 109 bits (273), Expect = 2e-24
Identities = 62/175 (35%), Positives = 98/175 (56%), Gaps = 1/175 (0%)
Frame = +1
Query: 271 LDIHKQHLSPVQTAYFP-EPLLLHQGHMEWLFDYEGNRYLDFFSGIVTVSVGHCHPKLNA 447
L + ++H+ P +F +P+ + + +++FD +G+RYLD + + VGHCHP++
Sbjct: 11 LALRRKHIGPSCKVFFAADPIKIVRAQRQYMFDEKGDRYLDCINNVA--HVGHCHPEVVQ 68
Query: 448 AAQTQLGRLWHTSPVFFHPPIHEYAEKLSALLPEPLKVIFLVNSGSEANDLAMLMARAHT 627
AAQ Q+ L +T+ F H I EYA++LSA LP+ L V + NSGSEANDLA+ +AR
Sbjct: 69 AAQKQM-ELLNTNSRFLHDNIVEYAKRLSATLPDKLSVCYFTNSGSEANDLALRLARQFR 127
Query: 628 NNTDIISFRGAYHGCSPYTIGLTNVGFYKMRIPTGMGCRSTMCPDVFRGPWGGSH 792
+ D+I+ AYHG I ++ F + + PD +RG + H
Sbjct: 128 GHQDVITLDHAYHGHLTSLIEISPYKFQQGKDVKKEFVHVAPSPDTYRGKYREDH 182
>ref|XP_003123702.2| PREDICTED: alanine--glyoxylate aminotransferase 2-like 2 [Sus
scrofa].
Length = 450
Score = 105 bits (261), Expect = 5e-23
Identities = 76/227 (33%), Positives = 114/227 (50%), Gaps = 6/227 (2%)
Frame = +1
Query: 271 LDIHKQHLSPVQTAYFPE-PLLLHQGHMEWLFDYEGNRYLDFFSGIVTVSVGHCHPKLNA 447
L + ++ LS +FPE P+ + +G ++++D EG Y+D + + VGHCHP +
Sbjct: 12 LALRRRLLSNSCKLFFPEDPIKIVRGQGQYMYDEEGAEYIDCINNVA--HVGHCHPLVVQ 69
Query: 448 AAQTQLGRLWHTSPVFFHPPIHEYAEKLSALLPEPLKVIFLVNSGSEANDLAMLMARAHT 627
AA Q ++ +T+ + H I +YA++LS LPE L V + +NSGSEANDLA+ +AR +T
Sbjct: 70 AAHEQ-NQVLNTNSRYLHDNIVDYAQRLSETLPEKLCVFYFLNSGSEANDLALRLARQYT 128
Query: 628 NNTDIISFRGAYHGCSPYTIGLTNVGFYKMRIPTGM--GCRSTMCPDVFRGPWGGSHCRD 801
+ D++ AYHG + L ++ YK R G PD +RG + H +
Sbjct: 129 GHWDVVVLDHAYHG---HLSSLIDISPYKFRDLDGQKEWVHVAPLPDTYRGLYREDH-PN 184
Query: 802 SPVQTTRECSCAPDCCQAKDQYIEQFKDTLSTSVAKSI---AGFFAE 933
V E Q K + I F SV I AGFF E
Sbjct: 185 PAVAYASEVKRVVSSAQEKGRKIAAFFAESLPSVGGQIVPPAGFFPE 231
>ref|NP_001172070.1| ornithine aminotransferase, mitochondrial [Sus scrofa].
Length = 439
Score = 68.9 bits (167), Expect = 4e-12
Identities = 37/102 (36%), Positives = 57/102 (55%)
Frame = +1
Query: 313 YFPEPLLLHQGHMEWLFDYEGNRYLDFFSGIVTVSVGHCHPKLNAAAQTQLGRLWHTSPV 492
Y P P+ L +G +++D EG RY DF S V+ GHCHPK+ A + Q+ +L TS
Sbjct: 55 YHPLPVALERGKGVYVWDVEGRRYFDFLSAYSAVNQGHCHPKIVNALKRQVDKLTLTSRA 114
Query: 493 FFHPPIHEYAEKLSALLPEPLKVIFLVNSGSEANDLAMLMAR 618
F++ + EY E ++ L + +N+G EA + A +AR
Sbjct: 115 FYNDVLGEYEEYITKLF--NYHKVLPMNTGVEAGETACKIAR 154
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 28,032,893
Number of extensions: 835799
Number of successful extensions: 2764
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 2761
Number of HSP's successfully gapped: 4
Length of query: 330
Length of database: 11,343,932
Length adjustment: 99
Effective length of query: 231
Effective length of database: 8,879,129
Effective search space: 2051078799
Effective search space used: 2051078799
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003878
(991 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr16 375 e-101
>Sscrofa_Chr16
|| Length = 86898991
Score = 375 bits (189), Expect = e-101
Identities = 189/189 (100%)
Strand = Plus / Minus
Query: 247 cagtcgatcgcctacagccgagtcctggacattcacaagcaacacctttctcctgtgcag 306
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 21509084 cagtcgatcgcctacagccgagtcctggacattcacaagcaacacctttctcctgtgcag 21509025
Query: 307 acggcctatttcccagagcctctgctgctccatcagggccacatggagtggctctttgat 366
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 21509024 acggcctatttcccagagcctctgctgctccatcagggccacatggagtggctctttgat 21508965
Query: 367 tatgagggaaacagatacctggatttcttttctgggattgtcactgtcagcgttggtcac 426
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 21508964 tatgagggaaacagatacctggatttcttttctgggattgtcactgtcagcgttggtcac 21508905
Query: 427 tgccacccg 435
|||||||||
Sbjct: 21508904 tgccacccg 21508896
Score = 329 bits (166), Expect = 2e-87
Identities = 166/166 (100%)
Strand = Plus / Minus
Query: 1 gtccagctggtcagtgagccgtggagccctctctccaacctgcttccacggggatctgct 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 21518991 gtccagctggtcagtgagccgtggagccctctctccaacctgcttccacggggatctgct 21518932
Query: 61 tcctgacagtgagagatgactgtagcctggagacatctgctgagagctttgcacctgcag 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 21518931 tcctgacagtgagagatgactgtagcctggagacatctgctgagagctttgcacctgcag 21518872
Query: 121 accttatctcccaggacccccaaggcgggcccttccctgaatggtg 166
||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 21518871 accttatctcccaggacccccaaggcgggcccttccctgaatggtg 21518826
Score = 252 bits (127), Expect = 3e-64
Identities = 127/127 (100%)
Strand = Plus / Minus
Query: 435 gaaactaaacgccgcggcacaaacgcagcttggccgcctgtggcacacaagccccgtctt 494
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 21507187 gaaactaaacgccgcggcacaaacgcagcttggccgcctgtggcacacaagccccgtctt 21507128
Query: 495 cttccaccctcccatccacgaatacgcagagaagctttcagcgcttcttcctgagcctct 554
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 21507127 cttccaccctcccatccacgaatacgcagagaagctttcagcgcttcttcctgagcctct 21507068
Query: 555 gaaggtc 561
|||||||
Sbjct: 21507067 gaaggtc 21507061
Score = 194 bits (98), Expect = 6e-47
Identities = 98/98 (100%)
Strand = Plus / Minus
Query: 839 cagactgctgccaagccaaagaccagtatattgaacagttcaaagacaccctgagcactt 898
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 21497720 cagactgctgccaagccaaagaccagtatattgaacagttcaaagacaccctgagcactt 21497661
Query: 899 ctgtggccaaatccattgctggattttttgcagagcca 936
||||||||||||||||||||||||||||||||||||||
Sbjct: 21497660 ctgtggccaaatccattgctggattttttgcagagcca 21497623
Score = 192 bits (97), Expect = 3e-46
Identities = 97/97 (100%)
Strand = Plus / Minus
Query: 557 aggtcattttcttggtgaacagtggctcagaagccaatgacctagccatgctgatggcca 616
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 21505539 aggtcattttcttggtgaacagtggctcagaagccaatgacctagccatgctgatggcca 21505480
Query: 617 gagcacacacaaataacacagacatcatttctttcag 653
|||||||||||||||||||||||||||||||||||||
Sbjct: 21505479 gagcacacacaaataacacagacatcatttctttcag 21505443
Score = 184 bits (93), Expect = 6e-44
Identities = 96/97 (98%)
Strand = Plus / Minus
Query: 651 cagaggagcctaccatgggtgcagtccttacacaattggcctgaccaatgtagggttcta 710
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 21503061 cagaggagcctaccatgggtgcagtccttacacaattggcctgaccaatgtagggttcta 21503002
Query: 711 caaaatgagaatccccactgggatgggctgccgatcc 747
|||||||||||||||||||||||||| ||||||||||
Sbjct: 21503001 caaaatgagaatccccactgggatggactgccgatcc 21502965
Score = 180 bits (91), Expect = 1e-42
Identities = 91/91 (100%)
Strand = Plus / Minus
Query: 751 atgtgcccagatgttttccgtgggccttggggaggaagccactgccgagattctccagtg 810
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 21502189 atgtgcccagatgttttccgtgggccttggggaggaagccactgccgagattctccagtg 21502130
Query: 811 caaacaacgagggaatgcagctgtgcaccag 841
|||||||||||||||||||||||||||||||
Sbjct: 21502129 caaacaacgagggaatgcagctgtgcaccag 21502099
Score = 172 bits (87), Expect = 2e-40
Identities = 87/87 (100%)
Strand = Plus / Minus
Query: 163 ggtgctttctggacatctgtgaccaaactcggtcttcatacaaagcccatcatgcctccg 222
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 21510179 ggtgctttctggacatctgtgaccaaactcggtcttcatacaaagcccatcatgcctccg 21510120
Query: 223 tgtgacttcacacctgaaagataccag 249
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Sbjct: 21510119 tgtgacttcacacctgaaagataccag 21510093
Score = 91.7 bits (46), Expect = 7e-16
Identities = 49/50 (98%)
Strand = Plus / Minus
Query: 942 ggggtgagtggagtggttcagtacccgaaagggtttctaaaagaagcctt 991
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Sbjct: 21496528 ggggtgagtggagtggttcagtacccgaaagggtttctaaaggaagcctt 21496479
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 30,470,289
Number of extensions: 205
Number of successful extensions: 205
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 205
Number of HSP's successfully gapped: 9
Length of query: 991
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 970
Effective length of database: 2,808,413,156
Effective search space: 2724160761320
Effective search space used: 2724160761320
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 29 (58.0 bits)