Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003898
(1091 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_002697278.1| PREDICTED: triggering receptor expressed on ... 72 7e-13
Alignment gi|XP_593583.2| PREDICTED: triggering receptor expressed on mye... 72 7e-13
>ref|XP_002697278.1| PREDICTED: triggering receptor expressed on myeloid cells-like 2-like
[Bos taurus].
Length = 328
Score = 72.4 bits (176), Expect = 7e-13
Identities = 37/58 (63%), Positives = 42/58 (72%)
Frame = -1
Query: 1013 SSASTTKRNTPLTKLATVLKSGTVIPTGPIPTSGPESPFTTSVPVLTAGFLTLARLLP 840
S AS TK NTPLTKL ++ +S TV+ TGP PTSGP SPF + V TAG LTLAR LP
Sbjct: 126 SPASITKGNTPLTKLPSIFQSETVVATGPAPTSGPGSPFISRGTVFTAGLLTLARPLP 183
>ref|XP_593583.2| PREDICTED: triggering receptor expressed on myeloid cells-like 2-like
isoform 1 [Bos taurus].
Length = 328
Score = 72.4 bits (176), Expect = 7e-13
Identities = 37/58 (63%), Positives = 42/58 (72%)
Frame = -1
Query: 1013 SSASTTKRNTPLTKLATVLKSGTVIPTGPIPTSGPESPFTTSVPVLTAGFLTLARLLP 840
S AS TK NTPLTKL ++ +S TV+ TGP PTSGP SPF + V TAG LTLAR LP
Sbjct: 126 SPASITKGNTPLTKLPSIFQSETVVATGPAPTSGPGSPFISRGTVFTAGLLTLARPLP 183
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 39,726,198
Number of extensions: 1139918
Number of successful extensions: 4640
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 4635
Number of HSP's successfully gapped: 2
Length of query: 363
Length of database: 17,681,374
Length adjustment: 104
Effective length of query: 259
Effective length of database: 14,240,222
Effective search space: 3688217498
Effective search space used: 3688217498
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003898
(1091 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_538912.2| PREDICTED: similar to triggering receptor expre... 74 2e-13
>ref|XP_538912.2| PREDICTED: similar to triggering receptor expressed on myeloid
cells-like 2 [Canis familiaris].
Length = 437
Score = 74.3 bits (181), Expect = 2e-13
Identities = 35/57 (61%), Positives = 44/57 (77%)
Frame = -1
Query: 1013 SSASTTKRNTPLTKLATVLKSGTVIPTGPIPTSGPESPFTTSVPVLTAGFLTLARLL 843
S ASTTKR+TPL LA +LKSG V+ +GP PTSGP++PFTTS+ + T LTL RL+
Sbjct: 235 SPASTTKRSTPLAHLANILKSGIVVTSGPTPTSGPDAPFTTSMTMFTPDLLTLTRLV 291
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 41,431,428
Number of extensions: 1173656
Number of successful extensions: 4878
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 4872
Number of HSP's successfully gapped: 1
Length of query: 363
Length of database: 18,874,504
Length adjustment: 104
Effective length of query: 259
Effective length of database: 15,407,560
Effective search space: 3990558040
Effective search space used: 3990558040
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003898
(1091 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_079083.2| trem-like transcript 2 protein precursor [Homo ... 67 3e-11
>ref|NP_079083.2| trem-like transcript 2 protein precursor [Homo sapiens].
Length = 321
Score = 67.0 bits (162), Expect = 3e-11
Identities = 43/89 (48%), Positives = 49/89 (55%), Gaps = 1/89 (1%)
Frame = -1
Query: 1013 SSASTTKRNTPLTKLATVLKSGTVIPTGPIPTSGPESPFTTSVPVLTAGFLTLARLLPXX 834
S A T+RN P T L +LKSGTV TG PTSGP++PFTT V V T G +TL RLL
Sbjct: 124 SPAPQTERNIPFTHLDNILKSGTVT-TGQAPTSGPDAPFTTGVMVFTPGLITLPRLLAST 182
Query: 833 XXXXXXXXXXXXXXXTLE-PRGTTGSQTV 750
T + PR T GSQTV
Sbjct: 183 RPASKTGYSFTATSTTSQGPRRTMGSQTV 211
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 40,652,597
Number of extensions: 1152001
Number of successful extensions: 4844
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 4828
Number of HSP's successfully gapped: 1
Length of query: 363
Length of database: 18,297,164
Length adjustment: 104
Effective length of query: 259
Effective length of database: 14,868,908
Effective search space: 3851047172
Effective search space used: 3851047172
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003898
(1091 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
***** No hits found ******
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 34,253,226
Number of extensions: 955634
Number of successful extensions: 3981
Number of sequences better than 1.0e-05: 0
Number of HSP's gapped: 3972
Number of HSP's successfully gapped: 0
Length of query: 363
Length of database: 15,617,559
Length adjustment: 103
Effective length of query: 260
Effective length of database: 12,523,851
Effective search space: 3256201260
Effective search space used: 3256201260
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003898
(1091 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_003128436.2| PREDICTED: hypothetical protein LOC100519493... 227 8e-60
Alignment gi|XP_001924423.3| PREDICTED: trem-like transcript 2 protein-li... 130 2e-30
>ref|XP_003128436.2| PREDICTED: hypothetical protein LOC100519493 [Sus scrofa].
Length = 142
Score = 227 bits (579), Expect = 8e-60
Identities = 112/132 (84%), Positives = 117/132 (88%), Gaps = 2/132 (1%)
Frame = +2
Query: 116 VSRFIGLACVSSLDLLAWHGLSS--RSLDSITNEEPLSPFFPTTASQASTFYPATEEQGA 289
+ + C++SL L L + RSLDSITNEEPLSPFFPTTASQASTFYPATEEQGA
Sbjct: 11 IKQLRAFGCITSLSLTGSSSLPTPRRSLDSITNEEPLSPFFPTTASQASTFYPATEEQGA 70
Query: 290 EEPVDHDQHHRNWEQGQHSQEHNGIRILVPGETEQSGEQALRLTRPLPSFPTAILSITCP 469
EEPVDHDQHHRNWEQGQHSQEHNGIRILVPGETEQSGEQALRLTRPLPSFPTAILSITCP
Sbjct: 71 EEPVDHDQHHRNWEQGQHSQEHNGIRILVPGETEQSGEQALRLTRPLPSFPTAILSITCP 130
Query: 470 AQLPVSHLAFSK 505
AQLPVSHLAFSK
Sbjct: 131 AQLPVSHLAFSK 142
>ref|XP_001924423.3| PREDICTED: trem-like transcript 2 protein-like, partial [Sus scrofa].
Length = 230
Score = 130 bits (326), Expect = 2e-30
Identities = 70/88 (79%), Positives = 70/88 (79%)
Frame = -1
Query: 1013 SSASTTKRNTPLTKLATVLKSGTVIPTGPIPTSGPESPFTTSVPVLTAGFLTLARLLPXX 834
S ASTTKRNTPLTKLATVLKSGTVIPTGPIPTSGPESPFTTSVPVLTAGFLTLARLLP
Sbjct: 105 SPASTTKRNTPLTKLATVLKSGTVIPTGPIPTSGPESPFTTSVPVLTAGFLTLARLLPSP 164
Query: 833 XXXXXXXXXXXXXXXTLEPRGTTGSQTV 750
TLEPRGTTGSQTV
Sbjct: 165 TGTVRRTSVTGTSPSTLEPRGTTGSQTV 192
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 25,687,529
Number of extensions: 737943
Number of successful extensions: 3149
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 3145
Number of HSP's successfully gapped: 2
Length of query: 363
Length of database: 11,343,932
Length adjustment: 100
Effective length of query: 263
Effective length of database: 8,854,232
Effective search space: 2328663016
Effective search space used: 2328663016
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003898
(1091 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|JH118526.1| Sus scrofa unplaced genomic scaffold ChrUScaf837 1318 0.0
Sscrofa_Chr07 1318 0.0
gb|GL892906.2| Sus scrofa unplaced genomic scaffold ChrUScaf791 64 2e-07
Sscrofa_Chr13 64 2e-07
Sscrofa_Chr14 62 7e-07
>gb|JH118526.1| Sus scrofa unplaced genomic scaffold ChrUScaf837
Length = 192345
Score = 1318 bits (665), Expect = 0.0
Identities = 684/689 (99%), Gaps = 1/689 (0%)
Strand = Plus / Minus
Query: 404 caggctctgaggctgacccggcccctgccctcgtttcccactgccatcctctctatcaca 463
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7519 caggctctgaggctgacccggcccctgccctcgtttcccactgccatcctctctatcaca 7460
Query: 464 tgtccagcccagcttcccgtctcccacctcgcattcagcaagtgaccagagtgagttccc 523
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7459 tgtccagcccagcttcccgtctcccacctcgcattcagcaagtgaccagagtgagttccc 7400
Query: 524 ggggcgggtcttctgtgtcctttgcccctgaggtctgttcaggcacaggaacagacaggt 583
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7399 ggggcgggtcttctgtgtcctttgcccctgaggtctgttcaggcacaggaacagacaggt 7340
Query: 584 aaaagggcattgaacccaggcgcccccggtacctgctgcggggggataatcggttgaggc 643
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7339 aaaagggcattgaacccaggcgcccccggtacctgctgcggggggataatcggttgaggc 7280
Query: 644 gaggtctgctggtggtggcgggcaatccggtgggcaggcacccagcctcagtggacgtgg 703
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7279 gaggtctgctggtggtggcgggcaatccggtgggcaggcacccagcctcagtggacgtgg 7220
Query: 704 aggccgggccggcagagggggctcgggcactgctgggagacgcagtcactgtctgggacc 763
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7219 aggccgggccggcagagggggctcgggcactgctgggagacgcagtcactgtctgggacc 7160
Query: 764 ccgtggtccccctgggctccaaggtggaggggctggtgccagtcacggaggtccgtctga 823
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7159 ccgtggtccccctgggctccaaggtggaggggctggtgccagtcacggaggtccgtctga 7100
Query: 824 cggtcccggtgggggagggcaagagtctggccaaggtgaggaatccagctgtgagcaccg 883
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7099 cggtcccggtgggggagggcaagagtctggccaaggtgaggaatccagctgtgagcaccg 7040
Query: 884 gcacgctggtggtgaaaggggattcagggcctgaggtagggatggggccggtggggatga 943
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7039 gcacgctggtggtgaaaggggattcagggcctgaggtagggatggggccggtggggatga 6980
Query: 944 cagttccgctcttgaggacggtggccagcttcgtaagaggagtgtttctcttggtcgtgg 1003
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6979 cagttccgctcttgaggacggtggccagcttcgtaagaggagtgtttctcttggtcgtgg 6920
Query: 1004 aggctgaggaaccagg-acatgaaatgaatagggggccgtggtgctggaaacaaattctg 1062
|||||||||||||||| |||||| |||| ||||||||||||||||||||| || ||||||
Sbjct: 6919 aggctgaggaaccaggaacatgagatgagtagggggccgtggtgctggaagcagattctg 6860
Query: 1063 gcagcccacacccttgtctgggtgcgggg 1091
|||||||||||||||||||||||||||||
Sbjct: 6859 gcagcccacacccttgtctgggtgcgggg 6831
Score = 579 bits (292), Expect = e-162
Identities = 292/292 (100%)
Strand = Plus / Minus
Query: 2 caccctctcccctttcagtatcgaagaagcctgaagtctaactcagatgagatggttctg 61
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12406 caccctctcccctttcagtatcgaagaagcctgaagtctaactcagatgagatggttctg 12347
Query: 62 tggaaagtcggtcattcttcggaatgaagtcaccattccttccctcgatacgtcgtctct 121
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12346 tggaaagtcggtcattcttcggaatgaagtcaccattccttccctcgatacgtcgtctct 12287
Query: 122 cgatttattggcctggcatgtgtgtcctctctcgatttattggcctggcacgggctgagc 181
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12286 cgatttattggcctggcatgtgtgtcctctctcgatttattggcctggcacgggctgagc 12227
Query: 182 agtaggagcttagactcgataacaaatgaagaacctctttctccgttctttcctaccact 241
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12226 agtaggagcttagactcgataacaaatgaagaacctctttctccgttctttcctaccact 12167
Query: 242 gcctcccaagcctcaactttctaccccgccaccgaagaacagggggctgaag 293
||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12166 gcctcccaagcctcaactttctaccccgccaccgaagaacagggggctgaag 12115
Score = 230 bits (116), Expect = 1e-57
Identities = 116/116 (100%)
Strand = Plus / Minus
Query: 292 agaacccgtagaccatgatcagcatcacaggaactgggagcaaggccagcactcccagga 351
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8367 agaacccgtagaccatgatcagcatcacaggaactgggagcaaggccagcactcccagga 8308
Query: 352 gcacaatgggataagaatcctggtgcctggggagacggagcagagcggggagcagg 407
||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8307 gcacaatgggataagaatcctggtgcctggggagacggagcagagcggggagcagg 8252
>Sscrofa_Chr07
|| Length = 134764511
Score = 1318 bits (665), Expect = 0.0
Identities = 684/689 (99%), Gaps = 1/689 (0%)
Strand = Plus / Plus
Query: 404 caggctctgaggctgacccggcccctgccctcgtttcccactgccatcctctctatcaca 463
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 41780808 caggctctgaggctgacccggcccctgccctcgtttcccactgccatcctctctatcaca 41780867
Query: 464 tgtccagcccagcttcccgtctcccacctcgcattcagcaagtgaccagagtgagttccc 523
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 41780868 tgtccagcccagcttcccgtctcccacctcgcattcagcaagtgaccagagtgagttccc 41780927
Query: 524 ggggcgggtcttctgtgtcctttgcccctgaggtctgttcaggcacaggaacagacaggt 583
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 41780928 ggggcgggtcttctgtgtcctttgcccctgaggtctgttcaggcacaggaacagacaggt 41780987
Query: 584 aaaagggcattgaacccaggcgcccccggtacctgctgcggggggataatcggttgaggc 643
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 41780988 aaaagggcattgaacccaggcgcccccggtacctgctgcggggggataatcggttgaggc 41781047
Query: 644 gaggtctgctggtggtggcgggcaatccggtgggcaggcacccagcctcagtggacgtgg 703
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 41781048 gaggtctgctggtggtggcgggcaatccggtgggcaggcacccagcctcagtggacgtgg 41781107
Query: 704 aggccgggccggcagagggggctcgggcactgctgggagacgcagtcactgtctgggacc 763
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 41781108 aggccgggccggcagagggggctcgggcactgctgggagacgcagtcactgtctgggacc 41781167
Query: 764 ccgtggtccccctgggctccaaggtggaggggctggtgccagtcacggaggtccgtctga 823
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 41781168 ccgtggtccccctgggctccaaggtggaggggctggtgccagtcacggaggtccgtctga 41781227
Query: 824 cggtcccggtgggggagggcaagagtctggccaaggtgaggaatccagctgtgagcaccg 883
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 41781228 cggtcccggtgggggagggcaagagtctggccaaggtgaggaatccagctgtgagcaccg 41781287
Query: 884 gcacgctggtggtgaaaggggattcagggcctgaggtagggatggggccggtggggatga 943
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 41781288 gcacgctggtggtgaaaggggattcagggcctgaggtagggatggggccggtggggatga 41781347
Query: 944 cagttccgctcttgaggacggtggccagcttcgtaagaggagtgtttctcttggtcgtgg 1003
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 41781348 cagttccgctcttgaggacggtggccagcttcgtaagaggagtgtttctcttggtcgtgg 41781407
Query: 1004 aggctgaggaaccagg-acatgaaatgaatagggggccgtggtgctggaaacaaattctg 1062
|||||||||||||||| |||||| |||| ||||||||||||||||||||| || ||||||
Sbjct: 41781408 aggctgaggaaccaggaacatgagatgagtagggggccgtggtgctggaagcagattctg 41781467
Query: 1063 gcagcccacacccttgtctgggtgcgggg 1091
|||||||||||||||||||||||||||||
Sbjct: 41781468 gcagcccacacccttgtctgggtgcgggg 41781496
Score = 579 bits (292), Expect = e-162
Identities = 292/292 (100%)
Strand = Plus / Plus
Query: 2 caccctctcccctttcagtatcgaagaagcctgaagtctaactcagatgagatggttctg 61
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 41776069 caccctctcccctttcagtatcgaagaagcctgaagtctaactcagatgagatggttctg 41776128
Query: 62 tggaaagtcggtcattcttcggaatgaagtcaccattccttccctcgatacgtcgtctct 121
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 41776129 tggaaagtcggtcattcttcggaatgaagtcaccattccttccctcgatacgtcgtctct 41776188
Query: 122 cgatttattggcctggcatgtgtgtcctctctcgatttattggcctggcacgggctgagc 181
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 41776189 cgatttattggcctggcatgtgtgtcctctctcgatttattggcctggcacgggctgagc 41776248
Query: 182 agtaggagcttagactcgataacaaatgaagaacctctttctccgttctttcctaccact 241
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 41776249 agtaggagcttagactcgataacaaatgaagaacctctttctccgttctttcctaccact 41776308
Query: 242 gcctcccaagcctcaactttctaccccgccaccgaagaacagggggctgaag 293
||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 41776309 gcctcccaagcctcaactttctaccccgccaccgaagaacagggggctgaag 41776360
Score = 230 bits (116), Expect = 1e-57
Identities = 116/116 (100%)
Strand = Plus / Plus
Query: 292 agaacccgtagaccatgatcagcatcacaggaactgggagcaaggccagcactcccagga 351
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 41779979 agaacccgtagaccatgatcagcatcacaggaactgggagcaaggccagcactcccagga 41780038
Query: 352 gcacaatgggataagaatcctggtgcctggggagacggagcagagcggggagcagg 407
||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 41780039 gcacaatgggataagaatcctggtgcctggggagacggagcagagcggggagcagg 41780094
Score = 69.9 bits (35), Expect = 3e-09
Identities = 53/59 (89%)
Strand = Plus / Plus
Query: 2 caccctctcccctttcagtatcgaagaagcctgaagtctaactcagatgagatggttct 60
||||||||||||||| ||||| |||||||||||| |||||||||| | ||||||||||
Sbjct: 105940102 caccctctccccttttagtatgaaagaagcctgaattctaactcaggtaagatggttct 105940160
>gb|GL892906.2| Sus scrofa unplaced genomic scaffold ChrUScaf791
Length = 164420
Score = 63.9 bits (32), Expect = 2e-07
Identities = 47/52 (90%)
Strand = Plus / Minus
Query: 9 tcccctttcagtatcgaagaagcctgaagtctaactcagatgagatggttct 60
|||||||| ||||| |||||||||||| |||||||||||| ||||||||||
Sbjct: 47613 tccccttttagtataaaagaagcctgaattctaactcagataagatggttct 47562
>Sscrofa_Chr13
|| Length = 218635234
Score = 63.9 bits (32), Expect = 2e-07
Identities = 47/52 (90%)
Strand = Plus / Minus
Query: 9 tcccctttcagtatcgaagaagcctgaagtctaactcagatgagatggttct 60
|||||||| ||||| |||||||||||| |||||||||||| ||||||||||
Sbjct: 89959645 tccccttttagtataaaagaagcctgaattctaactcagataagatggttct 89959594
>Sscrofa_Chr14
|| Length = 153851969
Score = 61.9 bits (31), Expect = 7e-07
Identities = 46/51 (90%)
Strand = Plus / Minus
Query: 10 cccctttcagtatcgaagaagcctgaagtctaactcagatgagatggttct 60
||||||| ||||| ||||||||||||| |||||||||| | ||||||||||
Sbjct: 44709770 ccccttttagtatagaagaagcctgaattctaactcaggtaagatggttct 44709720
Score = 61.9 bits (31), Expect = 7e-07
Identities = 46/51 (90%)
Strand = Plus / Minus
Query: 10 cccctttcagtatcgaagaagcctgaagtctaactcagatgagatggttct 60
||||||| ||||| ||||||||||||| |||||||||| | ||||||||||
Sbjct: 44711202 ccccttttagtatagaagaagcctgaattctaactcaggtaagatggttct 44711152
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 28,818,031
Number of extensions: 436
Number of successful extensions: 436
Number of sequences better than 1.0e-05: 5
Number of HSP's gapped: 430
Number of HSP's successfully gapped: 11
Length of query: 1091
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1070
Effective length of database: 2,808,413,156
Effective search space: 3005002076920
Effective search space used: 3005002076920
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)