Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003900
(1494 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001098933.1| SRY (sex determining region Y)-box 2 [Bos ta... 509 e-144
Alignment gi|XP_002692040.1| PREDICTED: SRY (sex determining region Y)-bo... 281 1e-75
Alignment gi|XP_875555.1| PREDICTED: SRY (sex determining region Y)-box 1... 281 1e-75
Alignment gi|NP_001157253.1| SRY (sex determining region Y)-box 14 [Bos t... 171 1e-42
Alignment gi|NP_001179004.1| protein SOX-15 [Bos taurus]. 140 2e-33
Alignment gi|XP_002695920.1| PREDICTED: SRY-box 15-like [Bos taurus]. 140 2e-33
Alignment gi|NP_001014407.1| sex-determining region Y protein [Bos taurus]. 121 1e-27
Alignment gi|NP_001180176.1| transcription factor SOX-10 [Bos taurus]. 119 7e-27
Alignment gi|XP_002687968.1| PREDICTED: SRY (sex determining region Y)-bo... 119 7e-27
Alignment gi|NP_001069257.1| transcription factor SOX-18 [Bos taurus]. 117 3e-26
>ref|NP_001098933.1| SRY (sex determining region Y)-box 2 [Bos taurus].
Length = 320
Score = 509 bits (1310), Expect = e-144
Identities = 258/320 (80%), Positives = 258/320 (80%), Gaps = 1/320 (0%)
Frame = +3
Query: 414 MYNMMETELKPXXXXXXXXXXXXXXXXXXXXXXXX-QKNSPDRVKRPMNAFMVWSRGQRR 590
MYNMMETELKP QKNSPDRVKRPMNAFMVWSRGQRR
Sbjct: 1 MYNMMETELKPPGPQQTSGGGGGGGGNSTAAAAGGNQKNSPDRVKRPMNAFMVWSRGQRR 60
Query: 591 KMAQENPKMHNSEISKRLGAEWKLLSETEKRPFIDEAKRLRALHMKEHPDYKYRPRRKTK 770
KMAQENPKMHNSEISKRLGAEWKLLSETEKRPFIDEAKRLRALHMKEHPDYKYRPRRKTK
Sbjct: 61 KMAQENPKMHNSEISKRLGAEWKLLSETEKRPFIDEAKRLRALHMKEHPDYKYRPRRKTK 120
Query: 771 TLMKKDKYTLPGGLLAPXXXXXXXXXXXXXXXXXXXXQRMDSYAHMNGWSNGSYSMMQDQ 950
TLMKKDKYTLPGGLLAP QRMDSYAHMNGWSNGSYSMMQDQ
Sbjct: 121 TLMKKDKYTLPGGLLAPGGNSMASGVGVGAGLGAGVNQRMDSYAHMNGWSNGSYSMMQDQ 180
Query: 951 LGYPQHPGLNAHSAAQMQPMHRYDVSALQYNSMTSSQTYMNGSPTYSMSYSQQGTPGMAL 1130
LGYPQHPGLNAH AAQMQPMHRYDVSALQYNSMTSSQTYMNGSPTYSMSYSQQGTPGMAL
Sbjct: 181 LGYPQHPGLNAHGAAQMQPMHRYDVSALQYNSMTSSQTYMNGSPTYSMSYSQQGTPGMAL 240
Query: 1131 GSMGSVVKXXXXXXXXXXXXXXXXRAPCQAGDLRDMISMYLPGAEVPEPAAPSRLHMSQH 1310
GSMGSVVK RAPCQAGDLRDMISMYLPGAEVPEPAAPSRLHMSQH
Sbjct: 241 GSMGSVVKSEASSSPPVVTSSSHSRAPCQAGDLRDMISMYLPGAEVPEPAAPSRLHMSQH 300
Query: 1311 YQSGPVPGTAINGTLPLSHM 1370
YQSGPVPGTAINGTLPLSHM
Sbjct: 301 YQSGPVPGTAINGTLPLSHM 320
>ref|XP_002692040.1| PREDICTED: SRY (sex determining region Y)-box 1-like [Bos taurus].
Length = 369
Score = 281 bits (718), Expect = 1e-75
Identities = 174/339 (51%), Positives = 204/339 (60%), Gaps = 56/339 (16%)
Frame = +3
Query: 522 KNSPDRVKRPMNAFMVWSRGQRRKMAQENPKMHNSEISKRLGAEWKLLSETEKRPFIDEA 701
K + DRVKRPMNAFMVWSRGQRRKMAQENPKMHNSEISKRLGAEWK++SE EKRPFIDEA
Sbjct: 40 KANQDRVKRPMNAFMVWSRGQRRKMAQENPKMHNSEISKRLGAEWKVMSEAEKRPFIDEA 99
Query: 702 KRLRALHMKEHPDYKYRPRRKTKTLMKKDKYTLPGGLLAPXXXXXXXXXXXXXXXXXXXX 881
KRLRALHMKEHPDYKYRPRRKTKTL+KKDKY+L GGLLA
Sbjct: 100 KRLRALHMKEHPDYKYRPRRKTKTLLKKDKYSLAGGLLA--AGAGGGAAVAVGVGAAAVG 157
Query: 882 QRMDS--------YAHMNGWSNGSY-----------SMMQD-QLGYPQHPGL-----NAH 986
QR++S YAH+NGW+NG+Y +MMQ+ QL Y QHPG +AH
Sbjct: 158 QRLESPGGAAGGGYAHVNGWANGAYPGSVAAAAAAAAMMQEAQLAYGQHPGAGGAHPHAH 217
Query: 987 SA-----------AQMQPMHRYDVSALQYNSMTSSQTYMNGSPT--YSMSYSQQG----- 1112
A QPMHRYD+ ALQY+ +++SQ YM+ SP+ + Y G
Sbjct: 218 PAHPHAHHPHAHPHNPQPMHRYDMGALQYSPISNSQGYMSASPSGYGGLPYGAAGGAHQN 277
Query: 1113 -----------TPGMALGSMGSVVKXXXXXXXXXXXXXXXXRAPCQAGDLRDMISMYLPG 1259
ALG++GS+VK RAPC GDLR+MISMYLP
Sbjct: 278 SAVAAAAAAAAASSGALGALGSLVK---SEPSGSPPAAAHSRAPC-PGDLREMISMYLPA 333
Query: 1260 AEVPEP-AAPSRLH-MSQHYQSGPVPGTAINGTLPLSHM 1370
E +P AA SRLH + HYQ G NGT+PL+H+
Sbjct: 334 GEGGDPAAAQSRLHSLPPHYQGA---GAGANGTVPLTHI 369
>ref|XP_875555.1| PREDICTED: SRY (sex determining region Y)-box 1-like [Bos taurus].
Length = 369
Score = 281 bits (718), Expect = 1e-75
Identities = 174/339 (51%), Positives = 204/339 (60%), Gaps = 56/339 (16%)
Frame = +3
Query: 522 KNSPDRVKRPMNAFMVWSRGQRRKMAQENPKMHNSEISKRLGAEWKLLSETEKRPFIDEA 701
K + DRVKRPMNAFMVWSRGQRRKMAQENPKMHNSEISKRLGAEWK++SE EKRPFIDEA
Sbjct: 40 KANQDRVKRPMNAFMVWSRGQRRKMAQENPKMHNSEISKRLGAEWKVMSEAEKRPFIDEA 99
Query: 702 KRLRALHMKEHPDYKYRPRRKTKTLMKKDKYTLPGGLLAPXXXXXXXXXXXXXXXXXXXX 881
KRLRALHMKEHPDYKYRPRRKTKTL+KKDKY+L GGLLA
Sbjct: 100 KRLRALHMKEHPDYKYRPRRKTKTLLKKDKYSLAGGLLA--AGAGGGAAVAVGVGAAAVG 157
Query: 882 QRMDS--------YAHMNGWSNGSY-----------SMMQD-QLGYPQHPGL-----NAH 986
QR++S YAH+NGW+NG+Y +MMQ+ QL Y QHPG +AH
Sbjct: 158 QRLESPGGAAGGGYAHVNGWANGAYPGSVAAAAAAAAMMQEAQLAYGQHPGAGGAHPHAH 217
Query: 987 SA-----------AQMQPMHRYDVSALQYNSMTSSQTYMNGSPT--YSMSYSQQG----- 1112
A QPMHRYD+ ALQY+ +++SQ YM+ SP+ + Y G
Sbjct: 218 PAHPHAHHPHAHPHNPQPMHRYDMGALQYSPISNSQGYMSASPSGYGGLPYGAAGGAHQN 277
Query: 1113 -----------TPGMALGSMGSVVKXXXXXXXXXXXXXXXXRAPCQAGDLRDMISMYLPG 1259
ALG++GS+VK RAPC GDLR+MISMYLP
Sbjct: 278 SAVAAAAAAAAASSGALGALGSLVK---SEPSGSPPAAAHSRAPC-PGDLREMISMYLPA 333
Query: 1260 AEVPEP-AAPSRLH-MSQHYQSGPVPGTAINGTLPLSHM 1370
E +P AA SRLH + HYQ G NGT+PL+H+
Sbjct: 334 GEGGDPAAAQSRLHSLPPHYQGA---GAGANGTVPLTHI 369
>ref|NP_001157253.1| SRY (sex determining region Y)-box 14 [Bos taurus].
Length = 240
Score = 171 bits (434), Expect = 1e-42
Identities = 79/90 (87%), Positives = 83/90 (92%)
Frame = +3
Query: 534 DRVKRPMNAFMVWSRGQRRKMAQENPKMHNSEISKRLGAEWKLLSETEKRPFIDEAKRLR 713
D +KRPMNAFMVWSRGQRRKMAQENPKMHNSEISKRLGAEWKLLSE EKRP+IDEAKRLR
Sbjct: 6 DHIKRPMNAFMVWSRGQRRKMAQENPKMHNSEISKRLGAEWKLLSEAEKRPYIDEAKRLR 65
Query: 714 ALHMKEHPDYKYRPRRKTKTLMKKDKYTLP 803
A HMKEHPDYKYRPRRK K L+KKD+Y P
Sbjct: 66 AQHMKEHPDYKYRPRRKPKNLLKKDRYVFP 95
>ref|NP_001179004.1| protein SOX-15 [Bos taurus].
Length = 233
Score = 140 bits (354), Expect = 2e-33
Identities = 62/80 (77%), Positives = 75/80 (93%)
Frame = +3
Query: 534 DRVKRPMNAFMVWSRGQRRKMAQENPKMHNSEISKRLGAEWKLLSETEKRPFIDEAKRLR 713
++VKRPMNAFMVWS QRR+MAQ+NPKMHNSEISKRLGA+WKLL E EKRPF++EAKRLR
Sbjct: 47 EKVKRPMNAFMVWSSAQRRQMAQQNPKMHNSEISKRLGAQWKLLGEDEKRPFVEEAKRLR 106
Query: 714 ALHMKEHPDYKYRPRRKTKT 773
A H++++PDYKYRPRRK+K+
Sbjct: 107 ARHLRDYPDYKYRPRRKSKS 126
>ref|XP_002695920.1| PREDICTED: SRY-box 15-like [Bos taurus].
Length = 233
Score = 140 bits (354), Expect = 2e-33
Identities = 62/80 (77%), Positives = 75/80 (93%)
Frame = +3
Query: 534 DRVKRPMNAFMVWSRGQRRKMAQENPKMHNSEISKRLGAEWKLLSETEKRPFIDEAKRLR 713
++VKRPMNAFMVWS QRR+MAQ+NPKMHNSEISKRLGA+WKLL E EKRPF++EAKRLR
Sbjct: 47 EKVKRPMNAFMVWSSAQRRQMAQQNPKMHNSEISKRLGAQWKLLGEDEKRPFVEEAKRLR 106
Query: 714 ALHMKEHPDYKYRPRRKTKT 773
A H++++PDYKYRPRRK+K+
Sbjct: 107 ARHLRDYPDYKYRPRRKSKS 126
>ref|NP_001014407.1| sex-determining region Y protein [Bos taurus].
Length = 229
Score = 121 bits (304), Expect = 1e-27
Identities = 69/178 (38%), Positives = 102/178 (57%)
Frame = +3
Query: 519 QKNSPDRVKRPMNAFMVWSRGQRRKMAQENPKMHNSEISKRLGAEWKLLSETEKRPFIDE 698
+++S D VKRPMNAF+VWSR +RRK+A ENPKM NS+ISK+LG EWK L++ EKRPF +E
Sbjct: 47 RESSQDHVKRPMNAFIVWSRERRRKVALENPKMKNSDISKQLGYEWKRLTDAEKRPFFEE 106
Query: 699 AKRLRALHMKEHPDYKYRPRRKTKTLMKKDKYTLPGGLLAPXXXXXXXXXXXXXXXXXXX 878
A+RL A+H ++P YKYRPRR+ K K +LP
Sbjct: 107 AQRLLAIHRDKYPGYKYRPRRRAKRPQK----SLPA--------------DSSILCNPMH 148
Query: 879 XQRMDSYAHMNGWSNGSYSMMQDQLGYPQHPGLNAHSAAQMQPMHRYDVSALQYNSMT 1052
+ + + + +G + +YS M+ QL Q + + + +Q H ++L +N +T
Sbjct: 149 VETLHPFTYRDGCAKTTYSQMESQLSRSQSVII---TNSLLQKEHHSSWTSLGHNKVT 203
>ref|NP_001180176.1| transcription factor SOX-10 [Bos taurus].
Length = 469
Score = 119 bits (298), Expect = 7e-27
Identities = 64/153 (41%), Positives = 86/153 (56%)
Frame = +3
Query: 528 SPDRVKRPMNAFMVWSRGQRRKMAQENPKMHNSEISKRLGAEWKLLSETEKRPFIDEAKR 707
S VKRPMNAFMVW++ RRK+A + P +HN+E+SK LG W+LL+E++KRPFI+EA+R
Sbjct: 103 SKPHVKRPMNAFMVWAQAARRKLADQYPHLHNAELSKTLGKLWRLLNESDKRPFIEEAER 162
Query: 708 LRALHMKEHPDYKYRPRRKTKTLMKKDKYTLPGGLLAPXXXXXXXXXXXXXXXXXXXXQR 887
LR H K+HPDYKY+PRR+ + + PGG Q
Sbjct: 163 LRMQHKKDHPDYKYQPRRRKNGKAAQGESECPGG--------------EAEQGGAAAIQA 208
Query: 888 MDSYAHMNGWSNGSYSMMQDQLGYPQHPGLNAH 986
AH++ G S M D G P+HP +H
Sbjct: 209 HYKSAHLDHRHPGEGSPMSD--GNPEHPSGQSH 239
>ref|XP_002687968.1| PREDICTED: SRY (sex determining region Y)-box 10 [Bos taurus].
Length = 469
Score = 119 bits (298), Expect = 7e-27
Identities = 64/153 (41%), Positives = 86/153 (56%)
Frame = +3
Query: 528 SPDRVKRPMNAFMVWSRGQRRKMAQENPKMHNSEISKRLGAEWKLLSETEKRPFIDEAKR 707
S VKRPMNAFMVW++ RRK+A + P +HN+E+SK LG W+LL+E++KRPFI+EA+R
Sbjct: 103 SKPHVKRPMNAFMVWAQAARRKLADQYPHLHNAELSKTLGKLWRLLNESDKRPFIEEAER 162
Query: 708 LRALHMKEHPDYKYRPRRKTKTLMKKDKYTLPGGLLAPXXXXXXXXXXXXXXXXXXXXQR 887
LR H K+HPDYKY+PRR+ + + PGG Q
Sbjct: 163 LRMQHKKDHPDYKYQPRRRKNGKAAQGESECPGG--------------EAEQGGAAAIQA 208
Query: 888 MDSYAHMNGWSNGSYSMMQDQLGYPQHPGLNAH 986
AH++ G S M D G P+HP +H
Sbjct: 209 HYKSAHLDHRHPGEGSPMSD--GNPEHPSGQSH 239
>ref|NP_001069257.1| transcription factor SOX-18 [Bos taurus].
Length = 389
Score = 117 bits (292), Expect = 3e-26
Identities = 52/99 (52%), Positives = 74/99 (74%)
Frame = +3
Query: 519 QKNSPDRVKRPMNAFMVWSRGQRRKMAQENPKMHNSEISKRLGAEWKLLSETEKRPFIDE 698
Q R++RPMNAFMVW++ +R+++AQ+NP +HN+ +SK LG WK LS EKRPF++E
Sbjct: 78 QGTDESRIRRPMNAFMVWAKDERKRLAQQNPDLHNAVLSKMLGKAWKELSPAEKRPFVEE 137
Query: 699 AKRLRALHMKEHPDYKYRPRRKTKTLMKKDKYTLPGGLL 815
A+RLR H+++HP+YKYRPRRK + +K + PG LL
Sbjct: 138 AERLRVQHLRDHPNYKYRPRRKKQA--RKARRLEPGLLL 174
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 46,686,483
Number of extensions: 1269202
Number of successful extensions: 4738
Number of sequences better than 1.0e-05: 42
Number of HSP's gapped: 4718
Number of HSP's successfully gapped: 42
Length of query: 498
Length of database: 17,681,374
Length adjustment: 106
Effective length of query: 392
Effective length of database: 14,174,046
Effective search space: 5556226032
Effective search space used: 5556226032
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003900
(1494 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_545216.2| PREDICTED: similar to Transcription factor SOX-... 523 e-148
Alignment gi|XP_866541.1| PREDICTED: similar to SRY (sex determining regi... 290 3e-78
Alignment gi|XP_866526.1| PREDICTED: similar to SRY (sex determining regi... 288 9e-78
Alignment gi|XP_849239.1| PREDICTED: similar to SRY (sex determining regi... 281 9e-76
Alignment gi|XP_852934.1| PREDICTED: similar to SRY (sex determining regi... 279 4e-75
Alignment gi|XP_549298.2| PREDICTED: similar to Transcription factor SOX-... 279 4e-75
Alignment gi|XP_542802.2| PREDICTED: similar to SRY-box 14 [Canis familia... 171 1e-42
Alignment gi|XP_538379.2| PREDICTED: similar to SRY (sex determining regi... 119 8e-27
Alignment gi|XP_542944.2| PREDICTED: similar to SRY-box containing gene 1... 117 3e-26
Alignment gi|NP_001002978.1| transcription factor SOX-9 [Canis lupus fami... 116 5e-26
>ref|XP_545216.2| PREDICTED: similar to Transcription factor SOX-2 [Canis familiaris].
Length = 489
Score = 523 bits (1348), Expect = e-148
Identities = 269/345 (77%), Positives = 269/345 (77%), Gaps = 5/345 (1%)
Frame = +3
Query: 351 KVPAGQRVGCXXXXXXXXSARMYNMMETELKPXXXXXXXXXXXXXXXXXXXXXXXX---- 518
KVPAG RVG SARMYNMMETELKP
Sbjct: 145 KVPAGPRVGGRRRAGPAHSARMYNMMETELKPPGPQQTSGGGGGGGGGGGGNSTAAAAGG 204
Query: 519 -QKNSPDRVKRPMNAFMVWSRGQRRKMAQENPKMHNSEISKRLGAEWKLLSETEKRPFID 695
QKNSPDRVKRPMNAFMVWSRGQRRKMAQENPKMHNSEISKRLGAEWKLLSETEKRPFID
Sbjct: 205 NQKNSPDRVKRPMNAFMVWSRGQRRKMAQENPKMHNSEISKRLGAEWKLLSETEKRPFID 264
Query: 696 EAKRLRALHMKEHPDYKYRPRRKTKTLMKKDKYTLPGGLLAPXXXXXXXXXXXXXXXXXX 875
EAKRLRALHMKEHPDYKYRPRRKTKTLMKKDKYTLPGGLLAP
Sbjct: 265 EAKRLRALHMKEHPDYKYRPRRKTKTLMKKDKYTLPGGLLAPGGNSMASGVGVGAGLGAG 324
Query: 876 XXQRMDSYAHMNGWSNGSYSMMQDQLGYPQHPGLNAHSAAQMQPMHRYDVSALQYNSMTS 1055
QRMDSYAHMNGWSNGSYSMMQDQLGYPQHPGLNAH AAQMQPMHRYDVSALQYNSMTS
Sbjct: 325 VNQRMDSYAHMNGWSNGSYSMMQDQLGYPQHPGLNAHGAAQMQPMHRYDVSALQYNSMTS 384
Query: 1056 SQTYMNGSPTYSMSYSQQGTPGMALGSMGSVVKXXXXXXXXXXXXXXXXRAPCQAGDLRD 1235
SQTYMNGSPTYSMSYSQQGTPGMALGSMGSVVK RAPCQAGDLRD
Sbjct: 385 SQTYMNGSPTYSMSYSQQGTPGMALGSMGSVVKSEASSSPPVVTSSSHSRAPCQAGDLRD 444
Query: 1236 MISMYLPGAEVPEPAAPSRLHMSQHYQSGPVPGTAINGTLPLSHM 1370
MISMYLPGAEVPEPAAPSRLHMSQHYQSGPVPGTAINGTLPLSHM
Sbjct: 445 MISMYLPGAEVPEPAAPSRLHMSQHYQSGPVPGTAINGTLPLSHM 489
>ref|XP_866541.1| PREDICTED: similar to SRY (sex determining region Y)-box 3 isoform 4
[Canis familiaris].
Length = 340
Score = 290 bits (741), Expect = 3e-78
Identities = 161/289 (55%), Positives = 195/289 (67%), Gaps = 10/289 (3%)
Frame = +3
Query: 534 DRVKRPMNAFMVWSRGQRRKMAQENPKMHNSEISKRLGAEWKLLSETEKRPFIDEAKRLR 713
DRVKRPMNAFMVWSRGQRRKMA ENPKMHNSEISKRLGA+WKLL++ EKRPFIDEAKRLR
Sbjct: 62 DRVKRPMNAFMVWSRGQRRKMALENPKMHNSEISKRLGADWKLLTDAEKRPFIDEAKRLR 121
Query: 714 ALHMKEHPDYKYRPRRKTKTLMKKDKYTLPGGLLAP--XXXXXXXXXXXXXXXXXXXXQR 887
A+HMKE+PDYKYRPRRKTKTL+KKDKY+LPGGLL P QR
Sbjct: 122 AVHMKEYPDYKYRPRRKTKTLLKKDKYSLPGGLLPPGAAAAAAAAAAAAAASSPVGVGQR 181
Query: 888 MDSYAHMNGWSNGSYSMMQDQLGYPQHPGLNAHSAAQMQP-MHRYDVSALQYNSM--TSS 1058
+D+Y H+NGW+NG+YS++Q+QLGY Q +++ P MHRYD++ LQY+ M +
Sbjct: 182 LDTYTHVNGWANGAYSLVQEQLGYAQPATMSSPPPPPALPQMHRYDMAGLQYSPMMPPGA 241
Query: 1059 QTYMNGSPTYSMSYSQQGTPGMALGSMGSVVKXXXXXXXXXXXXXXXXRAPCQAGDLRDM 1238
Q+YMN + + S G GMALG MG+VVK GDLRDM
Sbjct: 242 QSYMNAAAAAAAS----GYGGMALGPMGTVVKTEPSSPPPAITSHSQRAC---LGDLRDM 294
Query: 1239 ISMYL-PGAEVPEPAAP---SRLH-MSQHYQSGPVPGTAINGTLPLSHM 1370
ISMYL PG + + A+P RLH + QHYQ GTA+NGT+PL+H+
Sbjct: 295 ISMYLPPGGDAADAASPLPGGRLHSVHQHYQGA---GTAVNGTVPLTHI 340
>ref|XP_866526.1| PREDICTED: similar to SRY (sex determining region Y)-box 3 isoform 3
[Canis familiaris].
Length = 344
Score = 288 bits (737), Expect = 9e-78
Identities = 157/289 (54%), Positives = 194/289 (67%), Gaps = 10/289 (3%)
Frame = +3
Query: 534 DRVKRPMNAFMVWSRGQRRKMAQENPKMHNSEISKRLGAEWKLLSETEKRPFIDEAKRLR 713
DRVKRPMNAFMVWSRGQRRKMA ENPKMHNSEISKRLGA+WKLL++ EKRPFIDEAKRLR
Sbjct: 62 DRVKRPMNAFMVWSRGQRRKMALENPKMHNSEISKRLGADWKLLTDAEKRPFIDEAKRLR 121
Query: 714 ALHMKEHPDYKYRPRRKTKTLMKKDKYTLPGGLLAP--XXXXXXXXXXXXXXXXXXXXQR 887
A+HMKE+PDYKYRPRRKTKTL+KKDKY+LPGGLL P QR
Sbjct: 122 AVHMKEYPDYKYRPRRKTKTLLKKDKYSLPGGLLPPGAAAAAAAAAAAAAASSPVGVGQR 181
Query: 888 MDSYAHMNGWSNGSYSMMQDQLGYPQHPGLNAHSAAQMQP-MHRYDVSALQYNSM--TSS 1058
+D+Y H+NGW+NG+YS++Q+QLGY Q +++ P MHRYD++ LQY+ M +
Sbjct: 182 LDTYTHVNGWANGAYSLVQEQLGYAQPATMSSPPPPPALPQMHRYDMAGLQYSPMMPPGA 241
Query: 1059 QTYMNGSPTYSMSYSQQGTPGMALGSMGSVVKXXXXXXXXXXXXXXXXRAPCQAGDLRDM 1238
Q+YMN + + + + M+LG MG+VVK GDLRDM
Sbjct: 242 QSYMNAAQPATAAAAAAAAAAMSLGPMGTVVKTEPSSPPPAITSHSQRAC---LGDLRDM 298
Query: 1239 ISMYL-PGAEVPEPAAP---SRLH-MSQHYQSGPVPGTAINGTLPLSHM 1370
ISMYL PG + + A+P RLH + QHYQ GTA+NGT+PL+H+
Sbjct: 299 ISMYLPPGGDAADAASPLPGGRLHSVHQHYQGA---GTAVNGTVPLTHI 344
>ref|XP_849239.1| PREDICTED: similar to SRY (sex determining region Y)-box 1 [Canis
familiaris].
Length = 403
Score = 281 bits (720), Expect = 9e-76
Identities = 177/360 (49%), Positives = 208/360 (57%), Gaps = 77/360 (21%)
Frame = +3
Query: 522 KNSPDRVKRPMNAFMVWSRGQRRKMAQENPKMHNSEISKRLGAEWKLLSETEKRPFIDEA 701
K S DRVKRPMNAFMVWSRGQRRKMAQENPKMHNSEISKRLGAEWK++SE EKRPFIDEA
Sbjct: 51 KASQDRVKRPMNAFMVWSRGQRRKMAQENPKMHNSEISKRLGAEWKVMSEAEKRPFIDEA 110
Query: 702 KRLRALHMKEHPDYKYRPRRKTKTLMKKDKYTLPGGLLAP-----XXXXXXXXXXXXXXX 866
KRLRALHMKEHPDYKYRPRRKTKTL+KKDKY+L GGLLA
Sbjct: 111 KRLRALHMKEHPDYKYRPRRKTKTLLKKDKYSLAGGLLAAGAGGGGAAVAMGVGVGVGVG 170
Query: 867 XXXXXQRMDS--------YAHMNGWSNGSY-----------SMMQD-QLGYPQHPGL--- 977
QR++S YAH+NGW+NG+Y +MMQ+ QL Y QHPG
Sbjct: 171 AAAVGQRLESPGGAAGGGYAHVNGWANGAYPGSVAAAAAAAAMMQEAQLAYGQHPGAGGA 230
Query: 978 ------NAHSA-----------AQMQPMHRYDVSALQYNSMTSSQTYMNGSPT------Y 1088
+AH A QPMHRYD+ ALQY+ +++SQ YM+ SP+ Y
Sbjct: 231 HPHPHPHAHPAHPHPHHPHAHPHNPQPMHRYDMGALQYSPISNSQGYMSASPSGYGGLPY 290
Query: 1089 SMSYSQQGTPG-------------------MALGSMGSVVKXXXXXXXXXXXXXXXXRAP 1211
+ + G ALG++GS+VK RAP
Sbjct: 291 GAAAAAAAAAGGAHQNSAVAAAAAAAAASSGALGALGSLVK---SEPSGSPPAPAHSRAP 347
Query: 1212 CQAGDLRDMISMYLPGAEVPEP------AAPSRLH-MSQHYQSGPVPGTAINGTLPLSHM 1370
C GDLR+MISMYLPG E +P AA SRLH + QHYQ G +NGT+PL+H+
Sbjct: 348 C-PGDLREMISMYLPGGETGDPAAAAAAAAQSRLHSLPQHYQGA---GAGVNGTVPLTHI 403
>ref|XP_852934.1| PREDICTED: similar to SRY (sex determining region Y)-box 3 isoform 2
[Canis familiaris].
Length = 444
Score = 279 bits (714), Expect = 4e-75
Identities = 161/314 (51%), Positives = 196/314 (62%), Gaps = 35/314 (11%)
Frame = +3
Query: 534 DRVKRPMNAFMVWSRGQRRKMAQENPKMHNSEISKRLGAEWKLLSETEKRPFIDEAKRLR 713
DRVKRPMNAFMVWSRGQRRKMA ENPKMHNSEISKRLGA+WKLL++ EKRPFIDEAKRLR
Sbjct: 137 DRVKRPMNAFMVWSRGQRRKMALENPKMHNSEISKRLGADWKLLTDAEKRPFIDEAKRLR 196
Query: 714 ALHMKEHPDYKYRPRRKTKTLMKKDKYTLPGGLLAP--XXXXXXXXXXXXXXXXXXXXQR 887
A+HMKE+PDYKYRPRRKTKTL+KKDKY+LPGGLL P QR
Sbjct: 197 AVHMKEYPDYKYRPRRKTKTLLKKDKYSLPGGLLPPGAAAAAAAAAAAAAASSPVGVGQR 256
Query: 888 MDSYAHMNGWSNGSYSMMQDQLGYPQHPGLNAHSAAQMQP-MHRYDVSALQYNSM--TSS 1058
+D+Y H+NGW+NG+YS++Q+QLGY Q +++ P MHRYD++ LQY+ M +
Sbjct: 257 LDTYTHVNGWANGAYSLVQEQLGYAQPATMSSPPPPPALPQMHRYDMAGLQYSPMMPPGA 316
Query: 1059 QTYMNGSPTYSMS----------------YSQQ---------GTPGMALGSMGSVVKXXX 1163
Q+YMN + + S Y QQ M+LG MG+VVK
Sbjct: 317 QSYMNAAAAAAASGYGGMAPSAAAAAAAAYGQQPATAAAAAAAAAAMSLGPMGTVVKTEP 376
Query: 1164 XXXXXXXXXXXXXRAPCQAGDLRDMISMYL-PGAEVPEPAAP---SRLH-MSQHYQSGPV 1328
GDLRDMISMYL PG + + A+P RLH + QHYQ
Sbjct: 377 SSPPPAITSHSQRAC---LGDLRDMISMYLPPGGDAADAASPLPGGRLHSVHQHYQGA-- 431
Query: 1329 PGTAINGTLPLSHM 1370
GTA+NGT+PL+H+
Sbjct: 432 -GTAVNGTVPLTHI 444
>ref|XP_549298.2| PREDICTED: similar to Transcription factor SOX-3 isoform 1 [Canis
familiaris].
Length = 354
Score = 279 bits (714), Expect = 4e-75
Identities = 161/314 (51%), Positives = 196/314 (62%), Gaps = 35/314 (11%)
Frame = +3
Query: 534 DRVKRPMNAFMVWSRGQRRKMAQENPKMHNSEISKRLGAEWKLLSETEKRPFIDEAKRLR 713
DRVKRPMNAFMVWSRGQRRKMA ENPKMHNSEISKRLGA+WKLL++ EKRPFIDEAKRLR
Sbjct: 47 DRVKRPMNAFMVWSRGQRRKMALENPKMHNSEISKRLGADWKLLTDAEKRPFIDEAKRLR 106
Query: 714 ALHMKEHPDYKYRPRRKTKTLMKKDKYTLPGGLLAP--XXXXXXXXXXXXXXXXXXXXQR 887
A+HMKE+PDYKYRPRRKTKTL+KKDKY+LPGGLL P QR
Sbjct: 107 AVHMKEYPDYKYRPRRKTKTLLKKDKYSLPGGLLPPGAAAAAAAAAAAAAASSPVGVGQR 166
Query: 888 MDSYAHMNGWSNGSYSMMQDQLGYPQHPGLNAHSAAQMQP-MHRYDVSALQYNSM--TSS 1058
+D+Y H+NGW+NG+YS++Q+QLGY Q +++ P MHRYD++ LQY+ M +
Sbjct: 167 LDTYTHVNGWANGAYSLVQEQLGYAQPATMSSPPPPPALPQMHRYDMAGLQYSPMMPPGA 226
Query: 1059 QTYMNGSPTYSMS----------------YSQQ---------GTPGMALGSMGSVVKXXX 1163
Q+YMN + + S Y QQ M+LG MG+VVK
Sbjct: 227 QSYMNAAAAAAASGYGGMAPSAAAAAAAAYGQQPATAAAAAAAAAAMSLGPMGTVVKTEP 286
Query: 1164 XXXXXXXXXXXXXRAPCQAGDLRDMISMYL-PGAEVPEPAAP---SRLH-MSQHYQSGPV 1328
GDLRDMISMYL PG + + A+P RLH + QHYQ
Sbjct: 287 SSPPPAITSHSQRAC---LGDLRDMISMYLPPGGDAADAASPLPGGRLHSVHQHYQGA-- 341
Query: 1329 PGTAINGTLPLSHM 1370
GTA+NGT+PL+H+
Sbjct: 342 -GTAVNGTVPLTHI 354
>ref|XP_542802.2| PREDICTED: similar to SRY-box 14 [Canis familiaris].
Length = 578
Score = 171 bits (434), Expect = 1e-42
Identities = 79/90 (87%), Positives = 83/90 (92%)
Frame = +3
Query: 534 DRVKRPMNAFMVWSRGQRRKMAQENPKMHNSEISKRLGAEWKLLSETEKRPFIDEAKRLR 713
D +KRPMNAFMVWSRGQRRKMAQENPKMHNSEISKRLGAEWKLLSE EKRP+IDEAKRLR
Sbjct: 344 DHIKRPMNAFMVWSRGQRRKMAQENPKMHNSEISKRLGAEWKLLSEAEKRPYIDEAKRLR 403
Query: 714 ALHMKEHPDYKYRPRRKTKTLMKKDKYTLP 803
A HMKEHPDYKYRPRRK K L+KKD+Y P
Sbjct: 404 AQHMKEHPDYKYRPRRKPKNLLKKDRYVFP 433
>ref|XP_538379.2| PREDICTED: similar to SRY (sex determining region Y)-box 10 [Canis
familiaris].
Length = 621
Score = 119 bits (298), Expect = 8e-27
Identities = 64/153 (41%), Positives = 86/153 (56%)
Frame = +3
Query: 528 SPDRVKRPMNAFMVWSRGQRRKMAQENPKMHNSEISKRLGAEWKLLSETEKRPFIDEAKR 707
S VKRPMNAFMVW++ RRK+A + P +HN+E+SK LG W+LL+E++KRPFI+EA+R
Sbjct: 255 SKPHVKRPMNAFMVWAQAARRKLADQYPHLHNAELSKTLGKLWRLLNESDKRPFIEEAER 314
Query: 708 LRALHMKEHPDYKYRPRRKTKTLMKKDKYTLPGGLLAPXXXXXXXXXXXXXXXXXXXXQR 887
LR H K+HPDYKY+PRR+ + + PGG Q
Sbjct: 315 LRMQHKKDHPDYKYQPRRRKNGKAAQGESECPGG--------------EAEQGGAAAIQA 360
Query: 888 MDSYAHMNGWSNGSYSMMQDQLGYPQHPGLNAH 986
AH++ G S M D G P+HP +H
Sbjct: 361 HYKSAHLDHRHPGEGSPMSD--GNPEHPSGQSH 391
>ref|XP_542944.2| PREDICTED: similar to SRY-box containing gene 12 [Canis
familiaris].
Length = 321
Score = 117 bits (293), Expect = 3e-26
Identities = 54/96 (56%), Positives = 70/96 (72%)
Frame = +3
Query: 522 KNSPDRVKRPMNAFMVWSRGQRRKMAQENPKMHNSEISKRLGAEWKLLSETEKRPFIDEA 701
K +KRPMNAFMVWS+ +RRK+ + P MHN+EISKRLG W+LL ++EK PF+ EA
Sbjct: 34 KTPSGHIKRPMNAFMVWSQHERRKIMDQWPDMHNAEISKRLGRRWQLLQDSEKIPFVREA 93
Query: 702 KRLRALHMKEHPDYKYRPRRKTKTLMKKDKYTLPGG 809
+RLR HM ++PDYKYRPR+K+K K + PGG
Sbjct: 94 ERLRLKHMADYPDYKYRPRKKSKGAPAKARPRPPGG 129
>ref|NP_001002978.1| transcription factor SOX-9 [Canis lupus familiaris].
Length = 513
Score = 116 bits (291), Expect = 5e-26
Identities = 51/81 (62%), Positives = 67/81 (82%)
Frame = +3
Query: 522 KNSPDRVKRPMNAFMVWSRGQRRKMAQENPKMHNSEISKRLGAEWKLLSETEKRPFIDEA 701
KN P VKRPMNAFMVW++ RRK+A + P +HN+E+SK LG W+LL+E+EKRPF++EA
Sbjct: 100 KNKP-HVKRPMNAFMVWAQAARRKLADQYPHLHNAELSKTLGKLWRLLNESEKRPFVEEA 158
Query: 702 KRLRALHMKEHPDYKYRPRRK 764
+RLR H K+HPDYKY+PRR+
Sbjct: 159 ERLRVQHKKDHPDYKYQPRRR 179
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 48,495,204
Number of extensions: 1267298
Number of successful extensions: 4936
Number of sequences better than 1.0e-05: 72
Number of HSP's gapped: 4888
Number of HSP's successfully gapped: 73
Length of query: 498
Length of database: 18,874,504
Length adjustment: 107
Effective length of query: 391
Effective length of database: 15,307,552
Effective search space: 5985252832
Effective search space used: 5985252832
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003900
(1494 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_003097.1| transcription factor SOX-2 [Homo sapiens]. 509 e-144
Alignment gi|NP_005625.2| transcription factor SOX-3 [Homo sapiens]. 281 9e-76
Alignment gi|NP_005977.2| transcription factor SOX-1 [Homo sapiens]. 279 4e-75
Alignment gi|NP_009015.1| transcription factor SOX-21 [Homo sapiens]. 173 4e-43
Alignment gi|NP_004180.1| transcription factor SOX-14 [Homo sapiens]. 171 1e-42
Alignment gi|NP_008873.1| protein SOX-15 [Homo sapiens]. 140 3e-33
Alignment gi|NP_003131.1| sex-determining region Y protein [Homo sapiens]. 128 1e-29
Alignment gi|NP_008872.1| transcription factor SOX-10 [Homo sapiens]. 119 7e-27
Alignment gi|NP_008874.2| transcription factor SOX-12 [Homo sapiens]. 117 3e-26
Alignment gi|NP_000337.1| transcription factor SOX-9 [Homo sapiens]. 116 5e-26
>ref|NP_003097.1| transcription factor SOX-2 [Homo sapiens].
Length = 317
Score = 509 bits (1311), Expect = e-144
Identities = 258/319 (80%), Positives = 258/319 (80%)
Frame = +3
Query: 414 MYNMMETELKPXXXXXXXXXXXXXXXXXXXXXXXXQKNSPDRVKRPMNAFMVWSRGQRRK 593
MYNMMETELKP QKNSPDRVKRPMNAFMVWSRGQRRK
Sbjct: 1 MYNMMETELKPPGPQQTSGGGGGNSTAAAAGGN--QKNSPDRVKRPMNAFMVWSRGQRRK 58
Query: 594 MAQENPKMHNSEISKRLGAEWKLLSETEKRPFIDEAKRLRALHMKEHPDYKYRPRRKTKT 773
MAQENPKMHNSEISKRLGAEWKLLSETEKRPFIDEAKRLRALHMKEHPDYKYRPRRKTKT
Sbjct: 59 MAQENPKMHNSEISKRLGAEWKLLSETEKRPFIDEAKRLRALHMKEHPDYKYRPRRKTKT 118
Query: 774 LMKKDKYTLPGGLLAPXXXXXXXXXXXXXXXXXXXXQRMDSYAHMNGWSNGSYSMMQDQL 953
LMKKDKYTLPGGLLAP QRMDSYAHMNGWSNGSYSMMQDQL
Sbjct: 119 LMKKDKYTLPGGLLAPGGNSMASGVGVGAGLGAGVNQRMDSYAHMNGWSNGSYSMMQDQL 178
Query: 954 GYPQHPGLNAHSAAQMQPMHRYDVSALQYNSMTSSQTYMNGSPTYSMSYSQQGTPGMALG 1133
GYPQHPGLNAH AAQMQPMHRYDVSALQYNSMTSSQTYMNGSPTYSMSYSQQGTPGMALG
Sbjct: 179 GYPQHPGLNAHGAAQMQPMHRYDVSALQYNSMTSSQTYMNGSPTYSMSYSQQGTPGMALG 238
Query: 1134 SMGSVVKXXXXXXXXXXXXXXXXRAPCQAGDLRDMISMYLPGAEVPEPAAPSRLHMSQHY 1313
SMGSVVK RAPCQAGDLRDMISMYLPGAEVPEPAAPSRLHMSQHY
Sbjct: 239 SMGSVVKSEASSSPPVVTSSSHSRAPCQAGDLRDMISMYLPGAEVPEPAAPSRLHMSQHY 298
Query: 1314 QSGPVPGTAINGTLPLSHM 1370
QSGPVPGTAINGTLPLSHM
Sbjct: 299 QSGPVPGTAINGTLPLSHM 317
>ref|NP_005625.2| transcription factor SOX-3 [Homo sapiens].
Length = 446
Score = 281 bits (720), Expect = 9e-76
Identities = 161/316 (50%), Positives = 197/316 (62%), Gaps = 37/316 (11%)
Frame = +3
Query: 534 DRVKRPMNAFMVWSRGQRRKMAQENPKMHNSEISKRLGAEWKLLSETEKRPFIDEAKRLR 713
DRVKRPMNAFMVWSRGQRRKMA ENPKMHNSEISKRLGA+WKLL++ EKRPFIDEAKRLR
Sbjct: 137 DRVKRPMNAFMVWSRGQRRKMALENPKMHNSEISKRLGADWKLLTDAEKRPFIDEAKRLR 196
Query: 714 ALHMKEHPDYKYRPRRKTKTLMKKDKYTLPGGLLAP---XXXXXXXXXXXXXXXXXXXXQ 884
A+HMKE+PDYKYRPRRKTKTL+KKDKY+LP GLL P Q
Sbjct: 197 AVHMKEYPDYKYRPRRKTKTLLKKDKYSLPSGLLPPGAAAAAAAAAAAAAAASSPVGVGQ 256
Query: 885 RMDSYAHMNGWSNGSYSMMQDQLGYPQHPGLNA-HSAAQMQPMHRYDVSALQYNSM--TS 1055
R+D+Y H+NGW+NG+YS++Q+QLGY Q P +++ + PMHRYD++ LQY+ M
Sbjct: 257 RLDTYTHVNGWANGAYSLVQEQLGYAQPPSMSSPPPPPALPPMHRYDMAGLQYSPMMPPG 316
Query: 1056 SQTYMN-----------------GSPTYSMSYSQQ---------GTPGMALGSMGSVVKX 1157
+Q+YMN + + +Y QQ M+LG MGSVVK
Sbjct: 317 AQSYMNVAAAAAAASGYGGMAPSATAAAAAAYGQQPATAAAAAAAAAAMSLGPMGSVVKS 376
Query: 1158 XXXXXXXXXXXXXXXRAPCQAGDLRDMISMYL-PGAEVPEPAAP---SRLH-MSQHYQSG 1322
GDLRDMISMYL PG + + A+P RLH + QHYQ
Sbjct: 377 EPSSPPPAIASHSQRAC---LGDLRDMISMYLPPGGDAADAASPLPGGRLHGVHQHYQGA 433
Query: 1323 PVPGTAINGTLPLSHM 1370
GTA+NGT+PL+H+
Sbjct: 434 ---GTAVNGTVPLTHI 446
>ref|NP_005977.2| transcription factor SOX-1 [Homo sapiens].
Length = 391
Score = 279 bits (714), Expect = 4e-75
Identities = 175/354 (49%), Positives = 207/354 (58%), Gaps = 71/354 (20%)
Frame = +3
Query: 522 KNSPDRVKRPMNAFMVWSRGQRRKMAQENPKMHNSEISKRLGAEWKLLSETEKRPFIDEA 701
K + DRVKRPMNAFMVWSRGQRRKMAQENPKMHNSEISKRLGAEWK++SE EKRPFIDEA
Sbjct: 45 KANQDRVKRPMNAFMVWSRGQRRKMAQENPKMHNSEISKRLGAEWKVMSEAEKRPFIDEA 104
Query: 702 KRLRALHMKEHPDYKYRPRRKTKTLMKKDKYTLPGGLLAP---XXXXXXXXXXXXXXXXX 872
KRLRALHMKEHPDYKYRPRRKTKTL+KKDKY+L GGLLA
Sbjct: 105 KRLRALHMKEHPDYKYRPRRKTKTLLKKDKYSLAGGLLAAGAGGGGAAVAMGVGVGVGAA 164
Query: 873 XXXQRMDS--------YAHMNGWSNGSY-----------SMMQD-QLGYPQHPGL----- 977
QR++S YAH+NGW+NG+Y +MMQ+ QL Y QHPG
Sbjct: 165 AVGQRLESPGGAAGGGYAHVNGWANGAYPGSVAAAAAAAAMMQEAQLAYGQHPGAGGAHP 224
Query: 978 NAHSA-----------AQMQPMHRYDVSALQYNSMTSSQTYMNGSPT------YSMSYSQ 1106
+AH A QPMHRYD+ ALQY+ +++SQ YM+ SP+ Y + +
Sbjct: 225 HAHPAHPHPHHPHAHPHNPQPMHRYDMGALQYSPISNSQGYMSASPSGYGGLPYGAAAAA 284
Query: 1107 QGTPG-------------------MALGSMGSVVKXXXXXXXXXXXXXXXXRAPCQAGDL 1229
G ALG++GS+VK RAPC GDL
Sbjct: 285 AAAAGGAHQNSAVAAAAAAAAASSGALGALGSLVK---SEPSGSPPAPAHSRAPC-PGDL 340
Query: 1230 RDMISMYLPGAEVPEP------AAPSRLH-MSQHYQSGPVPGTAINGTLPLSHM 1370
R+MISMYLP E +P AA SRLH + QHYQ G +NGT+PL+H+
Sbjct: 341 REMISMYLPAGEGGDPAAAAAAAAQSRLHSLPQHYQGA---GAGVNGTVPLTHI 391
>ref|NP_009015.1| transcription factor SOX-21 [Homo sapiens].
Length = 276
Score = 173 bits (438), Expect = 4e-43
Identities = 80/90 (88%), Positives = 85/90 (94%)
Frame = +3
Query: 534 DRVKRPMNAFMVWSRGQRRKMAQENPKMHNSEISKRLGAEWKLLSETEKRPFIDEAKRLR 713
D VKRPMNAFMVWSR QRRKMAQENPKMHNSEISKRLGAEWKLL+E+EKRPFIDEAKRLR
Sbjct: 6 DHVKRPMNAFMVWSRAQRRKMAQENPKMHNSEISKRLGAEWKLLTESEKRPFIDEAKRLR 65
Query: 714 ALHMKEHPDYKYRPRRKTKTLMKKDKYTLP 803
A+HMKEHPDYKYRPRRK KTL+KKDK+ P
Sbjct: 66 AMHMKEHPDYKYRPRRKPKTLLKKDKFAFP 95
>ref|NP_004180.1| transcription factor SOX-14 [Homo sapiens].
Length = 240
Score = 171 bits (434), Expect = 1e-42
Identities = 79/90 (87%), Positives = 83/90 (92%)
Frame = +3
Query: 534 DRVKRPMNAFMVWSRGQRRKMAQENPKMHNSEISKRLGAEWKLLSETEKRPFIDEAKRLR 713
D +KRPMNAFMVWSRGQRRKMAQENPKMHNSEISKRLGAEWKLLSE EKRP+IDEAKRLR
Sbjct: 6 DHIKRPMNAFMVWSRGQRRKMAQENPKMHNSEISKRLGAEWKLLSEAEKRPYIDEAKRLR 65
Query: 714 ALHMKEHPDYKYRPRRKTKTLMKKDKYTLP 803
A HMKEHPDYKYRPRRK K L+KKD+Y P
Sbjct: 66 AQHMKEHPDYKYRPRRKPKNLLKKDRYVFP 95
>ref|NP_008873.1| protein SOX-15 [Homo sapiens].
Length = 233
Score = 140 bits (353), Expect = 3e-33
Identities = 62/80 (77%), Positives = 74/80 (92%)
Frame = +3
Query: 534 DRVKRPMNAFMVWSRGQRRKMAQENPKMHNSEISKRLGAEWKLLSETEKRPFIDEAKRLR 713
++VKRPMNAFMVWS QRR+MAQ+NPKMHNSEISKRLGA+WKLL E EKRPF++EAKRLR
Sbjct: 47 EKVKRPMNAFMVWSSAQRRQMAQQNPKMHNSEISKRLGAQWKLLDEDEKRPFVEEAKRLR 106
Query: 714 ALHMKEHPDYKYRPRRKTKT 773
A H++++PDYKYRPRRK K+
Sbjct: 107 ARHLRDYPDYKYRPRRKAKS 126
>ref|NP_003131.1| sex-determining region Y protein [Homo sapiens].
Length = 204
Score = 128 bits (322), Expect = 1e-29
Identities = 70/165 (42%), Positives = 102/165 (61%)
Frame = +3
Query: 525 NSPDRVKRPMNAFMVWSRGQRRKMAQENPKMHNSEISKRLGAEWKLLSETEKRPFIDEAK 704
N DRVKRPMNAF+VWSR QRRKMA ENP+M NSEISK+LG +WK+L+E EK PF EA+
Sbjct: 55 NVQDRVKRPMNAFIVWSRDQRRKMALENPRMRNSEISKQLGYQWKMLTEAEKWPFFQEAQ 114
Query: 705 RLRALHMKEHPDYKYRPRRKTKTLMKKDKYTLPGGLLAPXXXXXXXXXXXXXXXXXXXXQ 884
+L+A+H +++P+YKYRPRRK K ++ K+ LP
Sbjct: 115 KLQAMHREKYPNYKYRPRRKAK-MLPKNCSLLPA----------------DPASVLCSEV 157
Query: 885 RMDSYAHMNGWSNGSYSMMQDQLGYPQHPGLNAHSAAQMQPMHRY 1019
++D+ + + + ++S M+ QLG+ P +NA S+ Q + + +
Sbjct: 158 QLDNRLYRDDCTKATHSRMEHQLGH--LPPINAASSPQQRDRYSH 200
>ref|NP_008872.1| transcription factor SOX-10 [Homo sapiens].
Length = 466
Score = 119 bits (298), Expect = 7e-27
Identities = 64/153 (41%), Positives = 86/153 (56%)
Frame = +3
Query: 528 SPDRVKRPMNAFMVWSRGQRRKMAQENPKMHNSEISKRLGAEWKLLSETEKRPFIDEAKR 707
S VKRPMNAFMVW++ RRK+A + P +HN+E+SK LG W+LL+E++KRPFI+EA+R
Sbjct: 100 SKPHVKRPMNAFMVWAQAARRKLADQYPHLHNAELSKTLGKLWRLLNESDKRPFIEEAER 159
Query: 708 LRALHMKEHPDYKYRPRRKTKTLMKKDKYTLPGGLLAPXXXXXXXXXXXXXXXXXXXXQR 887
LR H K+HPDYKY+PRR+ + + PGG Q
Sbjct: 160 LRMQHKKDHPDYKYQPRRRKNGKAAQGEAECPGG--------------EAEQGGTAAIQA 205
Query: 888 MDSYAHMNGWSNGSYSMMQDQLGYPQHPGLNAH 986
AH++ G S M D G P+HP +H
Sbjct: 206 HYKSAHLDHRHPGEGSPMSD--GNPEHPSGQSH 236
>ref|NP_008874.2| transcription factor SOX-12 [Homo sapiens].
Length = 315
Score = 117 bits (293), Expect = 3e-26
Identities = 54/96 (56%), Positives = 70/96 (72%)
Frame = +3
Query: 522 KNSPDRVKRPMNAFMVWSRGQRRKMAQENPKMHNSEISKRLGAEWKLLSETEKRPFIDEA 701
K +KRPMNAFMVWS+ +RRK+ + P MHN+EISKRLG W+LL ++EK PF+ EA
Sbjct: 34 KTPSGHIKRPMNAFMVWSQHERRKIMDQWPDMHNAEISKRLGRRWQLLQDSEKIPFVREA 93
Query: 702 KRLRALHMKEHPDYKYRPRRKTKTLMKKDKYTLPGG 809
+RLR HM ++PDYKYRPR+K+K K + PGG
Sbjct: 94 ERLRLKHMADYPDYKYRPRKKSKGAPAKARPRPPGG 129
>ref|NP_000337.1| transcription factor SOX-9 [Homo sapiens].
Length = 509
Score = 116 bits (291), Expect = 5e-26
Identities = 51/81 (62%), Positives = 67/81 (82%)
Frame = +3
Query: 522 KNSPDRVKRPMNAFMVWSRGQRRKMAQENPKMHNSEISKRLGAEWKLLSETEKRPFIDEA 701
KN P VKRPMNAFMVW++ RRK+A + P +HN+E+SK LG W+LL+E+EKRPF++EA
Sbjct: 100 KNKP-HVKRPMNAFMVWAQAARRKLADQYPHLHNAELSKTLGKLWRLLNESEKRPFVEEA 158
Query: 702 KRLRALHMKEHPDYKYRPRRK 764
+RLR H K+HPDYKY+PRR+
Sbjct: 159 ERLRVQHKKDHPDYKYQPRRR 179
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 47,199,233
Number of extensions: 1214634
Number of successful extensions: 4689
Number of sequences better than 1.0e-05: 56
Number of HSP's gapped: 4667
Number of HSP's successfully gapped: 56
Length of query: 498
Length of database: 18,297,164
Length adjustment: 107
Effective length of query: 391
Effective length of database: 14,770,016
Effective search space: 5775076256
Effective search space used: 5775076256
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003900
(1494 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_035573.3| transcription factor SOX-2 [Mus musculus]. 511 e-145
Alignment gi|NP_033263.2| transcription factor SOX-3 [Mus musculus]. 283 3e-76
Alignment gi|NP_033259.2| transcription factor SOX-1 [Mus musculus]. 279 4e-75
Alignment gi|NP_808421.1| transcription factor SOX-21 [Mus musculus]. 173 4e-43
Alignment gi|NP_035570.1| transcription factor SOX-14 [Mus musculus]. 171 1e-42
Alignment gi|NP_033261.1| protein SOX-15 [Mus musculus]. 138 1e-32
Alignment gi|NP_033260.4| transcription factor SOX-11 [Mus musculus]. 118 1e-26
Alignment gi|NP_035567.1| transcription factor SOX-10 [Mus musculus]. 117 2e-26
Alignment gi|NP_035568.1| transcription factor SOX-12 [Mus musculus]. 117 2e-26
Alignment gi|NP_035571.1| transcription factor SOX-17 [Mus musculus]. 116 4e-26
>ref|NP_035573.3| transcription factor SOX-2 [Mus musculus].
Length = 319
Score = 511 bits (1315), Expect = e-145
Identities = 256/319 (80%), Positives = 258/319 (80%)
Frame = +3
Query: 414 MYNMMETELKPXXXXXXXXXXXXXXXXXXXXXXXXQKNSPDRVKRPMNAFMVWSRGQRRK 593
MYNMMETELKP QKNSPDRVKRPMNAFMVWSRGQRRK
Sbjct: 1 MYNMMETELKPPGPQQASGGGGGGGNATAAATGGNQKNSPDRVKRPMNAFMVWSRGQRRK 60
Query: 594 MAQENPKMHNSEISKRLGAEWKLLSETEKRPFIDEAKRLRALHMKEHPDYKYRPRRKTKT 773
MAQENPKMHNSEISKRLGAEWKLLSETEKRPFIDEAKRLRALHMKEHPDYKYRPRRKTKT
Sbjct: 61 MAQENPKMHNSEISKRLGAEWKLLSETEKRPFIDEAKRLRALHMKEHPDYKYRPRRKTKT 120
Query: 774 LMKKDKYTLPGGLLAPXXXXXXXXXXXXXXXXXXXXQRMDSYAHMNGWSNGSYSMMQDQL 953
LMKKDKYTLPGGLLAP QRMDSYAHMNGWSNGSYSMMQ+QL
Sbjct: 121 LMKKDKYTLPGGLLAPGGNSMASGVGVGAGLGAGVNQRMDSYAHMNGWSNGSYSMMQEQL 180
Query: 954 GYPQHPGLNAHSAAQMQPMHRYDVSALQYNSMTSSQTYMNGSPTYSMSYSQQGTPGMALG 1133
GYPQHPGLNAH AAQMQPMHRYDVSALQYNSMTSSQTYMNGSPTYSMSYSQQGTPGMALG
Sbjct: 181 GYPQHPGLNAHGAAQMQPMHRYDVSALQYNSMTSSQTYMNGSPTYSMSYSQQGTPGMALG 240
Query: 1134 SMGSVVKXXXXXXXXXXXXXXXXRAPCQAGDLRDMISMYLPGAEVPEPAAPSRLHMSQHY 1313
SMGSVVK RAPCQAGDLRDMISMYLPGAEVPEPAAPSRLHM+QHY
Sbjct: 241 SMGSVVKSEASSSPPVVTSSSHSRAPCQAGDLRDMISMYLPGAEVPEPAAPSRLHMAQHY 300
Query: 1314 QSGPVPGTAINGTLPLSHM 1370
QSGPVPGTAINGTLPLSHM
Sbjct: 301 QSGPVPGTAINGTLPLSHM 319
>ref|NP_033263.2| transcription factor SOX-3 [Mus musculus].
Length = 450
Score = 283 bits (723), Expect = 3e-76
Identities = 162/315 (51%), Positives = 197/315 (62%), Gaps = 36/315 (11%)
Frame = +3
Query: 534 DRVKRPMNAFMVWSRGQRRKMAQENPKMHNSEISKRLGAEWKLLSETEKRPFIDEAKRLR 713
DRVKRPMNAFMVWSRGQRRKMA ENPKMHNSEISKRLGA+WKLL++ EKRPFIDEAKRLR
Sbjct: 142 DRVKRPMNAFMVWSRGQRRKMALENPKMHNSEISKRLGADWKLLTDAEKRPFIDEAKRLR 201
Query: 714 ALHMKEHPDYKYRPRRKTKTLMKKDKYTLPGGLLAP--XXXXXXXXXXXXXXXXXXXXQR 887
A+HMKE+PDYKYRPRRKTKTL+KKDKY+LPGGLL P QR
Sbjct: 202 AVHMKEYPDYKYRPRRKTKTLLKKDKYSLPGGLLPPGAAAAAAAAAAAAAASSPVGVGQR 261
Query: 888 MDSYAHMNGWSNGSYSMMQDQLGYPQHPGLNAHSAAQMQP-MHRYDVSALQYNSM--TSS 1058
+D+Y H+NGW+NG+YS++Q+QLGY Q P +++ P MHRYD++ LQY+ M +
Sbjct: 262 LDTYTHVNGWANGAYSLVQEQLGYAQPPSMSSPPPPPALPQMHRYDMAGLQYSPMMPPGA 321
Query: 1059 QTYMN-----------------GSPTYSMSYSQQ---------GTPGMALGSMGSVVKXX 1160
Q+YMN + + +Y QQ M+LG MGSVVK
Sbjct: 322 QSYMNAAAAAAAASGYGGMAPSAAAAAAAAYGQQPATAAAAAAAAAAMSLGPMGSVVKSE 381
Query: 1161 XXXXXXXXXXXXXXRAPCQAGDLRDMISMYL-PGAEVPEPAAP---SRLH-MSQHYQSGP 1325
GDLRDMISMYL PG + + A+P RLH + QHYQ
Sbjct: 382 PSSPPPAIASHSQRAC---LGDLRDMISMYLPPGGDAADAASPLPGGRLHGVHQHYQGA- 437
Query: 1326 VPGTAINGTLPLSHM 1370
GTA+NGT+PL+H+
Sbjct: 438 --GTAVNGTVPLTHI 450
>ref|NP_033259.2| transcription factor SOX-1 [Mus musculus].
Length = 391
Score = 279 bits (714), Expect = 4e-75
Identities = 175/354 (49%), Positives = 207/354 (58%), Gaps = 71/354 (20%)
Frame = +3
Query: 522 KNSPDRVKRPMNAFMVWSRGQRRKMAQENPKMHNSEISKRLGAEWKLLSETEKRPFIDEA 701
K + DRVKRPMNAFMVWSRGQRRKMAQENPKMHNSEISKRLGAEWK++SE EKRPFIDEA
Sbjct: 45 KANQDRVKRPMNAFMVWSRGQRRKMAQENPKMHNSEISKRLGAEWKVMSEAEKRPFIDEA 104
Query: 702 KRLRALHMKEHPDYKYRPRRKTKTLMKKDKYTLPGGLLAP---XXXXXXXXXXXXXXXXX 872
KRLRALHMKEHPDYKYRPRRKTKTL+KKDKY+L GGLLA
Sbjct: 105 KRLRALHMKEHPDYKYRPRRKTKTLLKKDKYSLAGGLLAAGAGGGGAAVAMGVGVGVGAA 164
Query: 873 XXXQRMDS--------YAHMNGWSNGSY-----------SMMQD-QLGYPQHPGL----- 977
QR++S YAH+NGW+NG+Y +MMQ+ QL Y QHPG
Sbjct: 165 AVGQRLESPGGAAGGGYAHVNGWANGAYPGSVAAAAAAAAMMQEAQLAYGQHPGAGGAHP 224
Query: 978 NAHSA-----------AQMQPMHRYDVSALQYNSMTSSQTYMNGSPT------YSMSYSQ 1106
+AH A QPMHRYD+ ALQY+ +++SQ YM+ SP+ Y + +
Sbjct: 225 HAHPAHPHPHHPHAHPHNPQPMHRYDMGALQYSPISNSQGYMSASPSGYGGIPYGAAAAA 284
Query: 1107 QGTPG-------------------MALGSMGSVVKXXXXXXXXXXXXXXXXRAPCQAGDL 1229
G ALG++GS+VK RAPC GDL
Sbjct: 285 AAAAGGAHQNSAVAAAAAAAAASSGALGALGSLVK---SEPSGSPPAPAHSRAPC-PGDL 340
Query: 1230 RDMISMYLPGAEVPEP------AAPSRLH-MSQHYQSGPVPGTAINGTLPLSHM 1370
R+MISMYLP E +P AA SRLH + QHYQ G +NGT+PL+H+
Sbjct: 341 REMISMYLPAGEGGDPAAAAAAAAQSRLHSLPQHYQGA---GAGVNGTVPLTHI 391
>ref|NP_808421.1| transcription factor SOX-21 [Mus musculus].
Length = 276
Score = 173 bits (438), Expect = 4e-43
Identities = 80/90 (88%), Positives = 85/90 (94%)
Frame = +3
Query: 534 DRVKRPMNAFMVWSRGQRRKMAQENPKMHNSEISKRLGAEWKLLSETEKRPFIDEAKRLR 713
D VKRPMNAFMVWSR QRRKMAQENPKMHNSEISKRLGAEWKLL+E+EKRPFIDEAKRLR
Sbjct: 6 DHVKRPMNAFMVWSRAQRRKMAQENPKMHNSEISKRLGAEWKLLTESEKRPFIDEAKRLR 65
Query: 714 ALHMKEHPDYKYRPRRKTKTLMKKDKYTLP 803
A+HMKEHPDYKYRPRRK KTL+KKDK+ P
Sbjct: 66 AMHMKEHPDYKYRPRRKPKTLLKKDKFAFP 95
>ref|NP_035570.1| transcription factor SOX-14 [Mus musculus].
Length = 240
Score = 171 bits (434), Expect = 1e-42
Identities = 79/90 (87%), Positives = 83/90 (92%)
Frame = +3
Query: 534 DRVKRPMNAFMVWSRGQRRKMAQENPKMHNSEISKRLGAEWKLLSETEKRPFIDEAKRLR 713
D +KRPMNAFMVWSRGQRRKMAQENPKMHNSEISKRLGAEWKLLSE EKRP+IDEAKRLR
Sbjct: 6 DHIKRPMNAFMVWSRGQRRKMAQENPKMHNSEISKRLGAEWKLLSEAEKRPYIDEAKRLR 65
Query: 714 ALHMKEHPDYKYRPRRKTKTLMKKDKYTLP 803
A HMKEHPDYKYRPRRK K L+KKD+Y P
Sbjct: 66 AQHMKEHPDYKYRPRRKPKNLLKKDRYVFP 95
>ref|NP_033261.1| protein SOX-15 [Mus musculus].
Length = 231
Score = 138 bits (347), Expect = 1e-32
Identities = 61/79 (77%), Positives = 74/79 (93%)
Frame = +3
Query: 534 DRVKRPMNAFMVWSRGQRRKMAQENPKMHNSEISKRLGAEWKLLSETEKRPFIDEAKRLR 713
++VKRPMNAFMVWS QRR+MAQ+NPKMHNSEISKRLGA+WKLL + EKRPF++EAKRLR
Sbjct: 45 EKVKRPMNAFMVWSSVQRRQMAQQNPKMHNSEISKRLGAQWKLLGDEEKRPFVEEAKRLR 104
Query: 714 ALHMKEHPDYKYRPRRKTK 770
A H++++PDYKYRPRRK+K
Sbjct: 105 ARHLRDYPDYKYRPRRKSK 123
>ref|NP_033260.4| transcription factor SOX-11 [Mus musculus].
Length = 395
Score = 118 bits (296), Expect = 1e-26
Identities = 52/84 (61%), Positives = 68/84 (80%)
Frame = +3
Query: 522 KNSPDRVKRPMNAFMVWSRGQRRKMAQENPKMHNSEISKRLGAEWKLLSETEKRPFIDEA 701
K + +KRPMNAFMVWS+ +RRK+ +++P MHN+EISKRLG WK+L ++EK PFI EA
Sbjct: 43 KTASGHIKRPMNAFMVWSKIERRKIMEQSPDMHNAEISKRLGKRWKMLKDSEKIPFIREA 102
Query: 702 KRLRALHMKEHPDYKYRPRRKTKT 773
+RLR HM ++PDYKYRPR+K KT
Sbjct: 103 ERLRLKHMADYPDYKYRPRKKPKT 126
>ref|NP_035567.1| transcription factor SOX-10 [Mus musculus].
Length = 466
Score = 117 bits (293), Expect = 2e-26
Identities = 52/94 (55%), Positives = 70/94 (74%)
Frame = +3
Query: 528 SPDRVKRPMNAFMVWSRGQRRKMAQENPKMHNSEISKRLGAEWKLLSETEKRPFIDEAKR 707
S VKRPMNAFMVW++ RRK+A + P +HN+E+SK LG W+LL+E++KRPFI+EA+R
Sbjct: 100 SKPHVKRPMNAFMVWAQAARRKLADQYPHLHNAELSKTLGKLWRLLNESDKRPFIEEAER 159
Query: 708 LRALHMKEHPDYKYRPRRKTKTLMKKDKYTLPGG 809
LR H K+HPDYKY+PRR+ + + PGG
Sbjct: 160 LRMQHKKDHPDYKYQPRRRKNGKAAQGEAECPGG 193
>ref|NP_035568.1| transcription factor SOX-12 [Mus musculus].
Length = 314
Score = 117 bits (293), Expect = 2e-26
Identities = 54/96 (56%), Positives = 70/96 (72%)
Frame = +3
Query: 522 KNSPDRVKRPMNAFMVWSRGQRRKMAQENPKMHNSEISKRLGAEWKLLSETEKRPFIDEA 701
K +KRPMNAFMVWS+ +RRK+ + P MHN+EISKRLG W+LL ++EK PF+ EA
Sbjct: 34 KTPSGHIKRPMNAFMVWSQHERRKIMDQWPDMHNAEISKRLGRRWQLLQDSEKIPFVREA 93
Query: 702 KRLRALHMKEHPDYKYRPRRKTKTLMKKDKYTLPGG 809
+RLR HM ++PDYKYRPR+K+K K + PGG
Sbjct: 94 ERLRLKHMADYPDYKYRPRKKSKGAPAKARPRPPGG 129
>ref|NP_035571.1| transcription factor SOX-17 [Mus musculus].
Length = 419
Score = 116 bits (291), Expect = 4e-26
Identities = 50/93 (53%), Positives = 72/93 (77%)
Frame = +3
Query: 537 RVKRPMNAFMVWSRGQRRKMAQENPKMHNSEISKRLGAEWKLLSETEKRPFIDEAKRLRA 716
R++RPMNAFMVW++ +R+++AQ+NP +HN+E+SK LG WK L+ EKRPF++EA+RLR
Sbjct: 67 RIRRPMNAFMVWAKDERKRLAQQNPDLHNAELSKMLGKSWKALTLAEKRPFVEEAERLRV 126
Query: 717 LHMKEHPDYKYRPRRKTKTLMKKDKYTLPGGLL 815
HM++HP+YKYRPRR+ + K + GG L
Sbjct: 127 QHMQDHPNYKYRPRRRKQVKRMK---RVEGGFL 156
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 39,696,575
Number of extensions: 1002841
Number of successful extensions: 3737
Number of sequences better than 1.0e-05: 45
Number of HSP's gapped: 3709
Number of HSP's successfully gapped: 45
Length of query: 498
Length of database: 15,617,559
Length adjustment: 106
Effective length of query: 392
Effective length of database: 12,433,743
Effective search space: 4874027256
Effective search space used: 4874027256
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003900
(1494 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001116669.1| transcription factor SOX-2 [Sus scrofa]. 509 e-144
Alignment gi|XP_003360512.1| PREDICTED: transcription factor SOX-3-like [... 278 7e-75
Alignment gi|XP_003131095.1| PREDICTED: transcription factor SOX-21-like ... 173 3e-43
Alignment gi|XP_003131994.1| PREDICTED: protein SOX-15-like [Sus scrofa]. 144 2e-34
Alignment gi|XP_003360585.1| PREDICTED: sex-determining region Y protein-... 122 5e-28
Alignment gi|NP_999617.1| sex-determining region Y protein [Sus scrofa]. 122 5e-28
Alignment gi|NP_001093403.1| transcription factor SOX-10 [Sus scrofa]. 119 4e-27
Alignment gi|XP_003354985.1| PREDICTED: transcription factor SOX-11-like ... 116 3e-26
Alignment gi|NP_999008.1| transcription factor SOX-9 [Sus scrofa]. 116 3e-26
Alignment gi|XP_003359100.1| PREDICTED: transcription factor SOX-7 [Sus s... 116 4e-26
>ref|NP_001116669.1| transcription factor SOX-2 [Sus scrofa].
Length = 319
Score = 509 bits (1310), Expect = e-144
Identities = 256/319 (80%), Positives = 257/319 (80%)
Frame = +3
Query: 414 MYNMMETELKPXXXXXXXXXXXXXXXXXXXXXXXXQKNSPDRVKRPMNAFMVWSRGQRRK 593
MYNMMETELKP QKNSPDRVKRPMNAFMVWSRGQRRK
Sbjct: 1 MYNMMETELKPPGPQQTSGGGGGGGNSTAAAAGGNQKNSPDRVKRPMNAFMVWSRGQRRK 60
Query: 594 MAQENPKMHNSEISKRLGAEWKLLSETEKRPFIDEAKRLRALHMKEHPDYKYRPRRKTKT 773
MAQENPKMHNSEIS+RLGAEWKLLSETEKRPFIDEAKRLRALHMKEHPDYKYRPRRKTKT
Sbjct: 61 MAQENPKMHNSEISRRLGAEWKLLSETEKRPFIDEAKRLRALHMKEHPDYKYRPRRKTKT 120
Query: 774 LMKKDKYTLPGGLLAPXXXXXXXXXXXXXXXXXXXXQRMDSYAHMNGWSNGSYSMMQDQL 953
LMKKDKYTLPGGLLAP QRMDSYAHMNGWSN SYSMMQDQL
Sbjct: 121 LMKKDKYTLPGGLLAPGGNSMASGVGVGAGLGAGVNQRMDSYAHMNGWSNCSYSMMQDQL 180
Query: 954 GYPQHPGLNAHSAAQMQPMHRYDVSALQYNSMTSSQTYMNGSPTYSMSYSQQGTPGMALG 1133
GYPQHPGLNAHSAAQMQPMHRYDVSALQYNSMTSSQTYMNGSPTYSMSYSQQGTPGM LG
Sbjct: 181 GYPQHPGLNAHSAAQMQPMHRYDVSALQYNSMTSSQTYMNGSPTYSMSYSQQGTPGMTLG 240
Query: 1134 SMGSVVKXXXXXXXXXXXXXXXXRAPCQAGDLRDMISMYLPGAEVPEPAAPSRLHMSQHY 1313
SMGSVVK RAPCQAGDLRDMISMYLPGAEVPEPAAPSRLHMSQHY
Sbjct: 241 SMGSVVKSEASSSPPVVTSSSHSRAPCQAGDLRDMISMYLPGAEVPEPAAPSRLHMSQHY 300
Query: 1314 QSGPVPGTAINGTLPLSHM 1370
QSGPVPGTAINGTLPLSHM
Sbjct: 301 QSGPVPGTAINGTLPLSHM 319
>ref|XP_003360512.1| PREDICTED: transcription factor SOX-3-like [Sus scrofa].
Length = 448
Score = 278 bits (710), Expect = 7e-75
Identities = 160/315 (50%), Positives = 196/315 (62%), Gaps = 36/315 (11%)
Frame = +3
Query: 534 DRVKRPMNAFMVWSRGQRRKMAQENPKMHNSEISKRLGAEWKLLSETEKRPFIDEAKRLR 713
DRVKRPMNAFMVWSRGQRRKMA ENPKMHNSEISKRLGA+WKLL++ EKRPFIDEAKRLR
Sbjct: 140 DRVKRPMNAFMVWSRGQRRKMALENPKMHNSEISKRLGADWKLLTDAEKRPFIDEAKRLR 199
Query: 714 ALHMKEHPDYKYRPRRKTKTLMKKDKYTLPGGLLAP--XXXXXXXXXXXXXXXXXXXXQR 887
A+HMKE+PDYKYRPRRKTKTL+KKDKY+LPGGLL P QR
Sbjct: 200 AVHMKEYPDYKYRPRRKTKTLLKKDKYSLPGGLLPPGAAAAAAAAAAAAAASSPVGVGQR 259
Query: 888 MDSYAHMNGWSNGSYSMMQDQLGYPQHPGLNAHSAAQMQP-MHRYDVSALQYNSM--TSS 1058
+D+Y H+NGW+NG+YS++Q+QLGY Q +++ P MHRYD++ LQY+ M +
Sbjct: 260 LDTYTHVNGWANGAYSLVQEQLGYAQPATMSSPPPPPALPQMHRYDMAGLQYSPMMPPGA 319
Query: 1059 QTYMN-----------------GSPTYSMSYSQQ---------GTPGMALGSMGSVVKXX 1160
Q+YMN + + +Y QQ M+LG MG+VVK
Sbjct: 320 QSYMNAAAAAAAASGYGGMAPSAAAAAAAAYGQQPATAAAAAAAAAAMSLGPMGTVVKTE 379
Query: 1161 XXXXXXXXXXXXXXRAPCQAGDLRDMISMYL-PGAEVPEPAAP---SRLH-MSQHYQSGP 1325
GDLRDMISMYL PG + + A+P RLH + QHYQ
Sbjct: 380 PSSPPPAIASHSQRAC---LGDLRDMISMYLPPGGDAADAASPLPGGRLHSVHQHYQGA- 435
Query: 1326 VPGTAINGTLPLSHM 1370
GTA+NGT+PL+H+
Sbjct: 436 --GTAVNGTVPLTHI 448
>ref|XP_003131095.1| PREDICTED: transcription factor SOX-21-like [Sus scrofa].
Length = 276
Score = 173 bits (438), Expect = 3e-43
Identities = 80/90 (88%), Positives = 85/90 (94%)
Frame = +3
Query: 534 DRVKRPMNAFMVWSRGQRRKMAQENPKMHNSEISKRLGAEWKLLSETEKRPFIDEAKRLR 713
D VKRPMNAFMVWSR QRRKMAQENPKMHNSEISKRLGAEWKLL+E+EKRPFIDEAKRLR
Sbjct: 6 DHVKRPMNAFMVWSRAQRRKMAQENPKMHNSEISKRLGAEWKLLTESEKRPFIDEAKRLR 65
Query: 714 ALHMKEHPDYKYRPRRKTKTLMKKDKYTLP 803
A+HMKEHPDYKYRPRRK KTL+KKDK+ P
Sbjct: 66 AMHMKEHPDYKYRPRRKPKTLLKKDKFAFP 95
>ref|XP_003131994.1| PREDICTED: protein SOX-15-like [Sus scrofa].
Length = 233
Score = 144 bits (362), Expect = 2e-34
Identities = 64/80 (80%), Positives = 75/80 (93%)
Frame = +3
Query: 534 DRVKRPMNAFMVWSRGQRRKMAQENPKMHNSEISKRLGAEWKLLSETEKRPFIDEAKRLR 713
++VKRPMNAFMVWS QRR+MAQ+NPKMHNSEISKRLGA+WKLL E EKRPF++EAKRLR
Sbjct: 47 EKVKRPMNAFMVWSSAQRRQMAQQNPKMHNSEISKRLGAQWKLLGEDEKRPFVEEAKRLR 106
Query: 714 ALHMKEHPDYKYRPRRKTKT 773
A H++++PDYKYRPRRKTKT
Sbjct: 107 ARHLRDYPDYKYRPRRKTKT 126
>ref|XP_003360585.1| PREDICTED: sex-determining region Y protein-like [Sus scrofa].
Length = 236
Score = 122 bits (306), Expect = 5e-28
Identities = 55/82 (67%), Positives = 70/82 (85%)
Frame = +3
Query: 519 QKNSPDRVKRPMNAFMVWSRGQRRKMAQENPKMHNSEISKRLGAEWKLLSETEKRPFIDE 698
+++ DRVKRPMNAF+VWSR QRRK+A ENP+M NSEISK LG +WK+L+E EKRPF +E
Sbjct: 55 RESGQDRVKRPMNAFIVWSRDQRRKVALENPQMQNSEISKWLGCKWKMLTEAEKRPFFEE 114
Query: 699 AKRLRALHMKEHPDYKYRPRRK 764
A+RL+A+H ++P YKYRPRRK
Sbjct: 115 AQRLQAVHRDKYPGYKYRPRRK 136
>ref|NP_999617.1| sex-determining region Y protein [Sus scrofa].
Length = 208
Score = 122 bits (306), Expect = 5e-28
Identities = 55/82 (67%), Positives = 70/82 (85%)
Frame = +3
Query: 519 QKNSPDRVKRPMNAFMVWSRGQRRKMAQENPKMHNSEISKRLGAEWKLLSETEKRPFIDE 698
+++ DRVKRPMNAF+VWSR QRRK+A ENP+M NSEISK LG +WK+L+E EKRPF +E
Sbjct: 55 RESGQDRVKRPMNAFIVWSRDQRRKVALENPQMQNSEISKWLGCKWKMLTEAEKRPFFEE 114
Query: 699 AKRLRALHMKEHPDYKYRPRRK 764
A+RL+A+H ++P YKYRPRRK
Sbjct: 115 AQRLQAVHRDKYPGYKYRPRRK 136
>ref|NP_001093403.1| transcription factor SOX-10 [Sus scrofa].
Length = 469
Score = 119 bits (298), Expect = 4e-27
Identities = 64/153 (41%), Positives = 86/153 (56%)
Frame = +3
Query: 528 SPDRVKRPMNAFMVWSRGQRRKMAQENPKMHNSEISKRLGAEWKLLSETEKRPFIDEAKR 707
S VKRPMNAFMVW++ RRK+A + P +HN+E+SK LG W+LL+E++KRPFI+EA+R
Sbjct: 103 SKPHVKRPMNAFMVWAQAARRKLADQYPHLHNAELSKTLGKLWRLLNESDKRPFIEEAER 162
Query: 708 LRALHMKEHPDYKYRPRRKTKTLMKKDKYTLPGGLLAPXXXXXXXXXXXXXXXXXXXXQR 887
LR H K+HPDYKY+PRR+ + + PGG Q
Sbjct: 163 LRMQHKKDHPDYKYQPRRRKNGKAAQGESECPGG--------------EAEQGGAAAIQA 208
Query: 888 MDSYAHMNGWSNGSYSMMQDQLGYPQHPGLNAH 986
AH++ G S M D G P+HP +H
Sbjct: 209 HYKSAHLDHRHPGEGSPMSD--GNPEHPSGQSH 239
>ref|XP_003354985.1| PREDICTED: transcription factor SOX-11-like [Sus scrofa].
Length = 447
Score = 116 bits (291), Expect = 3e-26
Identities = 51/83 (61%), Positives = 67/83 (80%)
Frame = +3
Query: 522 KNSPDRVKRPMNAFMVWSRGQRRKMAQENPKMHNSEISKRLGAEWKLLSETEKRPFIDEA 701
K + +KRPMNAFMVWS+ +RRK+ +++P MHN+EISKRLG WK+L ++EK PFI EA
Sbjct: 43 KTASGHIKRPMNAFMVWSKIERRKIMEQSPDMHNAEISKRLGKRWKMLKDSEKIPFIREA 102
Query: 702 KRLRALHMKEHPDYKYRPRRKTK 770
+RLR HM ++PDYKYRPR+K K
Sbjct: 103 ERLRLKHMADYPDYKYRPRKKPK 125
>ref|NP_999008.1| transcription factor SOX-9 [Sus scrofa].
Length = 509
Score = 116 bits (291), Expect = 3e-26
Identities = 51/81 (62%), Positives = 67/81 (82%)
Frame = +3
Query: 522 KNSPDRVKRPMNAFMVWSRGQRRKMAQENPKMHNSEISKRLGAEWKLLSETEKRPFIDEA 701
KN P VKRPMNAFMVW++ RRK+A + P +HN+E+SK LG W+LL+E+EKRPF++EA
Sbjct: 100 KNKP-HVKRPMNAFMVWAQAARRKLADQYPHLHNAELSKTLGKLWRLLNESEKRPFVEEA 158
Query: 702 KRLRALHMKEHPDYKYRPRRK 764
+RLR H K+HPDYKY+PRR+
Sbjct: 159 ERLRVQHKKDHPDYKYQPRRR 179
>ref|XP_003359100.1| PREDICTED: transcription factor SOX-7 [Sus scrofa].
Length = 389
Score = 116 bits (290), Expect = 4e-26
Identities = 52/99 (52%), Positives = 76/99 (76%)
Frame = +3
Query: 522 KNSPDRVKRPMNAFMVWSRGQRRKMAQENPKMHNSEISKRLGAEWKLLSETEKRPFIDEA 701
K S R++RPMNAFMVW++ +R+++A +NP +HN+E+SK LG WK L+ ++KRP++DEA
Sbjct: 39 KGSESRIRRPMNAFMVWAKDERKRLAVQNPDLHNAELSKMLGKSWKALTLSQKRPYVDEA 98
Query: 702 KRLRALHMKEHPDYKYRPRRKTKTLMKKDKYTLPGGLLA 818
+RLR HM+++P+YKYRPRRK K + K PG LL+
Sbjct: 99 ERLRLQHMQDYPNYKYRPRRK-KQAKRLCKRVDPGFLLS 136
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 30,691,555
Number of extensions: 885781
Number of successful extensions: 2932
Number of sequences better than 1.0e-05: 39
Number of HSP's gapped: 2915
Number of HSP's successfully gapped: 40
Length of query: 498
Length of database: 11,343,932
Length adjustment: 103
Effective length of query: 395
Effective length of database: 8,779,541
Effective search space: 3467918695
Effective search space used: 3467918695
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003900
(1494 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr13 1705 0.0
Sscrofa_ChrX 268 8e-69
Sscrofa_Chr11 216 3e-53
>Sscrofa_Chr13
|| Length = 218635234
Score = 1705 bits (860), Expect = 0.0
Identities = 939/965 (97%), Gaps = 5/965 (0%)
Strand = Plus / Plus
Query: 516 aaccagaagaacagcccagaccgagttaagcggcccatgaacgctttcatggtgtggtcc 575
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 128979759 aaccagaagaacagcccagaccgagttaagcggcccatgaacgctttcatggtgtggtcc 128979818
Query: 576 cgagggcagcggcgcaagatggcccaagagaaccccaagatgcacaactcggagatcagc 635
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 128979819 cgagggcagcggcgcaagatggcccaagagaaccccaagatgcacaactcggagatcagc 128979878
Query: 636 aaacggctgggcgccgagtggaaacttttgtcggagacggagaagcggccgttcatcgac 695
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 128979879 aaacggctgggcgccgagtggaaacttttgtcggagacggagaagcggccgttcatcgac 128979938
Query: 696 gaggccaagcggctgcgagcgctgcacatgaaggagcacccggattataaataccggccc 755
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 128979939 gaggccaagcggctgcgagcgctgcacatgaaggagcacccggattataaataccggccc 128979998
Query: 756 cggcggaaaaccaagacgctcatgaagaaggataagtacacactgcccggagggctgctg 815
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 128979999 cggcggaaaaccaagacgctcatgaagaaggataagtacacactgcccggagggctgctg 128980058
Query: 816 gccccgggaggcaacagcatggcgagcggggtcggggtgggcgccggcctcggcgcgggc 875
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 128980059 gccccgggaggcaacagcatggcgagcggggtcggggtgggcgccggcctcggcgcgggc 128980118
Query: 876 gtgaaccagcgcatggacagctacgcgcacatgaatggctggagcaacggcagctacagc 935
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 128980119 gtgaaccagcgcatggacagctacgcgcacatgaatggctggagcaacggcagctacagc 128980178
Query: 936 atgatgcaggaccagctgggctatccgcagcacccgggcctcaatgcgcacagcgcggct 995
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 128980179 atgatgcaggaccagctgggctatccgcagcacccgggcctcaatgcgcacagcgcggct 128980238
Query: 996 cagatgcagcccatgcaccgctacgacgtgagcgccctgcagtacaactccatgaccagc 1055
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 128980239 cagatgcagcccatgcaccgctacgacgtgagcgccctgcagtacaactccatgaccagc 128980298
Query: 1056 tcgcagacctacatgaacggctcgcccacctacagcatgtcctactcgcagcagggcacc 1115
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 128980299 tcgcagacctacatgaacggctcgcccacctacagcatgtcctactcgcagcagggcacc 128980358
Query: 1116 cctggcatggcgctcggttccatgggctcagtggtcaagtccgaggcgagctccagnnnn 1175
||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 128980359 cctggcatggcgctcggttccatgggctcagtggtcaagtccgaggcgagctccagcccc 128980418
Query: 1176 nnngtggttacctcttcttcccactccagggcgccctgccaggccggggacctacgggac 1235
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 128980419 cccgtggttacctcttcttcccactccagggcgccctgccaggccggggacctacgggac 128980478
Query: 1236 atgatcagcatgtacctccccggcgctgaggtgccagagcccgccgcccccagcagactt 1295
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 128980479 atgatcagcatgtacctccccggcgctgaggtgccagagcccgccgcccccagcagactt 128980538
Query: 1296 cacatgtcccagcactaccagagcggcccggtgcccggcacggccatcaacggtacactg 1355
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 128980539 cacatgtcccagcactaccagagcggcccggtgcccggcacggccatcaacggtacactg 128980598
Query: 1356 cctctctctcacatgtgagggccggacagtgaactggannnnnnnnnnnnnagaaaattt 1415
|||||||||||||||||||||||||||||||||||||| |||||| ||
Sbjct: 128980599 cctctctctcacatgtgagggccggacagtgaactgga-gggggcggggggagaaaa-tt 128980656
Query: 1416 ttcaaag-aaaagagggaaatggggaggagagtaggaaacagttttggagaaaaacccgg 1474
||||||| ||||||||||||| |||||||||||| ||||||| | |||||||||||||||
Sbjct: 128980657 ttcaaagaaaaagagggaaat-gggaggagagtaagaaacag-tatggagaaaaacccgg 128980714
Query: 1475 tacgc 1479
|||||
Sbjct: 128980715 tacgc 128980719
Score = 398 bits (201), Expect = e-108
Identities = 201/201 (100%)
Strand = Plus / Plus
Query: 129 agtttgagccccaggcttaagcctttccaaaaaataataataacaatcatcggcggcggc 188
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 128979372 agtttgagccccaggcttaagcctttccaaaaaataataataacaatcatcggcggcggc 128979431
Query: 189 aggatcggccagaagaggagggaagcgcttttttgatcccgattccagtttgcctttctt 248
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 128979432 aggatcggccagaagaggagggaagcgcttttttgatcccgattccagtttgcctttctt 128979491
Query: 249 ttcttcccccaaattattcttcgtctgattttcctcgcggagctctgcgctcccgacacc 308
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 128979492 ttcttcccccaaattattcttcgtctgattttcctcgcggagctctgcgctcccgacacc 128979551
Query: 309 cccgcccgcctctcctcctct 329
|||||||||||||||||||||
Sbjct: 128979552 cccgcccgcctctcctcctct 128979572
Score = 218 bits (110), Expect = 7e-54
Identities = 191/218 (87%)
Strand = Plus / Plus
Query: 543 aagcggcccatgaacgctttcatggtgtggtcccgagggcagcggcgcaagatggcccaa 602
||||| ||||||||||| |||||||| ||||||||||| ||| ||||||||||||||||
Sbjct: 86233438 aagcgacccatgaacgccttcatggtatggtcccgaggccagaggcgcaagatggcccag 86233497
Query: 603 gagaaccccaagatgcacaactcggagatcagcaaacggctgggcgccgagtggaaactt 662
|| |||||||||||||||||||| |||||||||||||| || |||||||| ||||| |||
Sbjct: 86233498 gaaaaccccaagatgcacaactcagagatcagcaaacgcctaggcgccgaatggaagctt 86233557
Query: 663 ttgtcggagacggagaagcggccgttcatcgacgaggccaagcggctgcgagcgctgcac 722
|||| ||| | ||||||||||||| |||||||||||||||| |||| || || | ||||
Sbjct: 86233558 ctgtctgaggcagagaagcggccgtacatcgacgaggccaagaggctacgcgcccagcac 86233617
Query: 723 atgaaggagcacccggattataaataccggccccggcg 760
|||||||||||||| || || || |||||||| |||||
Sbjct: 86233618 atgaaggagcaccctgactacaagtaccggccgcggcg 86233655
Score = 176 bits (89), Expect = 2e-41
Identities = 92/93 (98%)
Strand = Plus / Plus
Query: 1 cttgttcaaaaaagtatcaggagttgtcaaggcacagaagagagtgtttgcaaaaggggg 60
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 128979244 cttgttcaaaaaagtatcaggagttgtcaaggcagagaagagagtgtttgcaaaaggggg 128979303
Query: 61 aaagtagtttgctgcctctttaagactaggact 93
|||||||||||||||||||||||||||||||||
Sbjct: 128979304 aaagtagtttgctgcctctttaagactaggact 128979336
Score = 135 bits (68), Expect = 8e-29
Identities = 68/68 (100%)
Strand = Plus / Plus
Query: 403 acagcgcccgcatgtacaacatgatggagacggagctgaagccgcccggcccgcagcaaa 462
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 128979646 acagcgcccgcatgtacaacatgatggagacggagctgaagccgcccggcccgcagcaaa 128979705
Query: 463 cttcaggg 470
||||||||
Sbjct: 128979706 cttcaggg 128979713
>Sscrofa_ChrX
|| Length = 144288218
Score = 268 bits (135), Expect = 8e-69
Identities = 249/287 (86%)
Strand = Plus / Minus
Query: 534 gaccgagttaagcggcccatgaacgctttcatggtgtggtcccgagggcagcggcgcaag 593
||||| || ||||||||||||||||| ||||||||||||||||| |||||||||||||||
Sbjct: 131291957 gaccgcgtgaagcggcccatgaacgccttcatggtgtggtcccgcgggcagcggcgcaag 131291898
Query: 594 atggcccaagagaaccccaagatgcacaactcggagatcagcaaacggctgggcgccgag 653
||||||| ||||||||||||||||||||||| ||||||||||| || ||||||||||
Sbjct: 131291897 atggccctggagaaccccaagatgcacaactctgagatcagcaagcgcttgggcgccgac 131291838
Query: 654 tggaaacttttgtcggagacggagaagcggccgttcatcgacgaggccaagcggctgcga 713
|||||||| || | || ||||||||||||||||||||||||||||||||||||||||
Sbjct: 131291837 tggaaactgctgaccgacgcggagaagcggccgttcatcgacgaggccaagcggctgcgc 131291778
Query: 714 gcgctgcacatgaaggagcacccggattataaataccggccccggcggaaaaccaagacg 773
|| |||||||||| ||| ||||||| || || |||||||| || || || |||||||||
Sbjct: 131291777 gccgtgcacatgaaagagtacccggactacaagtaccggccgcgccgcaagaccaagacg 131291718
Query: 774 ctcatgaagaaggataagtacacactgcccggagggctgctggcccc 820
|| | |||||||| |||||| | |||||||| || |||||| ||||
Sbjct: 131291717 ctgctcaagaaggacaagtactcgctgcccggcggcctgctgccccc 131291671
>Sscrofa_Chr11
|| Length = 87690581
Score = 216 bits (109), Expect = 3e-53
Identities = 202/233 (86%)
Strand = Plus / Minus
Query: 543 aagcggcccatgaacgctttcatggtgtggtcccgagggcagcggcgcaagatggcccaa 602
|||||||||||||| || |||||||||||||| || | ||||||||||||||||||||
Sbjct: 69968569 aagcggcccatgaatgccttcatggtgtggtcgcgggctcagcggcgcaagatggcccag 69968510
Query: 603 gagaaccccaagatgcacaactcggagatcagcaaacggctgggcgccgagtggaaactt 662
||||||||||||||||||||||||||||||||||| || ||||||||||||||||| ||
Sbjct: 69968509 gagaaccccaagatgcacaactcggagatcagcaagcgcctgggcgccgagtggaagctg 69968450
Query: 663 ttgtcggagacggagaagcggccgttcatcgacgaggccaagcggctgcgagcgctgcac 722
| | ||| | |||||||||||||||||||||||||| ||||| ||||| || |||||
Sbjct: 69968449 ctcaccgagtcagagaagcggccgttcatcgacgaggcaaagcgcctgcgcgccatgcac 69968390
Query: 723 atgaaggagcacccggattataaataccggccccggcggaaaaccaagacgct 775
|||||||||||||| || || || |||||||| |||| || ||||||||||
Sbjct: 69968389 atgaaggagcaccccgactacaagtaccggccgaggcgcaagcccaagacgct 69968337
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 34,156,894
Number of extensions: 672
Number of successful extensions: 672
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 670
Number of HSP's successfully gapped: 9
Length of query: 1494
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1473
Effective length of database: 2,808,413,156
Effective search space: 4136792578788
Effective search space used: 4136792578788
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)