Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003917
(1118 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_002688412.1| PREDICTED: NT5C3 protein-like [Bos taurus]. 535 e-157
Alignment gi|XP_613852.3| PREDICTED: cytosolic 5'-nucleotidase III [Bos t... 535 e-157
Alignment gi|NP_001032686.1| 5'-nucleotidase, cytosolic III [Bos taurus]. 506 e-148
Alignment gi|XP_001789872.1| PREDICTED: NT5C3 protein-like, partial [Bos ... 410 e-114
Alignment gi|NP_001068983.1| 5'-nucleotidase, cytosolic III-like [Bos tau... 143 2e-34
>ref|XP_002688412.1| PREDICTED: NT5C3 protein-like [Bos taurus].
Length = 360
Score = 535 bits (1377), Expect(2) = e-157
Identities = 266/312 (85%), Positives = 280/312 (89%)
Frame = +2
Query: 98 REAQEDPSMDXXXXXXXXXXXXXXXXXXXXXXXXXQYIFTLRRKTGRKTKIIEMMPEFQK 277
REA+E S+D QYIFTL+RKTGRKTKIIEMMPE QK
Sbjct: 22 REAKEARSVDRAAVARVGEVASASVCALVAGVVLAQYIFTLKRKTGRKTKIIEMMPEIQK 81
Query: 278 SSVRIKNPTKVEEIICGLIKGGAAKLQVITDFDMTLSRFSYRGKRCPSCHNVIDNCKLIT 457
+SV IKNPT++EEIICGLIKGGAAKLQ+ITDFDMTLS+FSY+GKRCPSCHNVIDN KLIT
Sbjct: 82 NSVHIKNPTRIEEIICGLIKGGAAKLQIITDFDMTLSQFSYKGKRCPSCHNVIDNYKLIT 141
Query: 458 DECREKLLQLKEKYYAIEIDPVLTVEEKYPYIVEWYTKSHGLLIEQALPKAKLKEIVEES 637
DECREKLLQLKEKYYAIE+DPVLT+EEKYPYIVEWYTKSH LL+EQALPKAKLKEIVEES
Sbjct: 142 DECREKLLQLKEKYYAIEVDPVLTIEEKYPYIVEWYTKSHSLLVEQALPKAKLKEIVEES 201
Query: 638 DIMLKEGYENFFDKLQQYNIPVFIFSAGIGDVLEEVIRQAGVYYPNVKVVSNFMDFDDNG 817
DIMLKEGYENFFDKLQQY+IPVFIFSAGIGDVLEEVIRQAGVYYPNVKVVSNFMDFDDNG
Sbjct: 202 DIMLKEGYENFFDKLQQYSIPVFIFSAGIGDVLEEVIRQAGVYYPNVKVVSNFMDFDDNG 261
Query: 818 LLRGFKGELIHVFNKHDGSLKNTEYFNQLKNNSNIILLGDSQGGLKMADGVANVEHILKI 997
LL+GFKGELIHVFNKHDGSLKNTEYFNQLKNNSNIILLGDSQG LKMADGVANVEHILKI
Sbjct: 262 LLKGFKGELIHVFNKHDGSLKNTEYFNQLKNNSNIILLGDSQGDLKMADGVANVEHILKI 321
Query: 998 GYLNDRVDELLE 1033
GYLNDRVDELLE
Sbjct: 322 GYLNDRVDELLE 333
Score = 39.7 bits (91), Expect(2) = e-157
Identities = 18/19 (94%), Positives = 19/19 (100%)
Frame = +1
Query: 1033 KYMDSYDIVLVRDESLDVA 1089
KYMDSYDIVLV+DESLDVA
Sbjct: 334 KYMDSYDIVLVKDESLDVA 352
>ref|XP_613852.3| PREDICTED: cytosolic 5'-nucleotidase III [Bos taurus].
Length = 360
Score = 535 bits (1377), Expect(2) = e-157
Identities = 266/312 (85%), Positives = 280/312 (89%)
Frame = +2
Query: 98 REAQEDPSMDXXXXXXXXXXXXXXXXXXXXXXXXXQYIFTLRRKTGRKTKIIEMMPEFQK 277
REA+E S+D QYIFTL+RKTGRKTKIIEMMPE QK
Sbjct: 22 REAKEARSVDRAAVARVGEVASASVCALVAGVVLAQYIFTLKRKTGRKTKIIEMMPEIQK 81
Query: 278 SSVRIKNPTKVEEIICGLIKGGAAKLQVITDFDMTLSRFSYRGKRCPSCHNVIDNCKLIT 457
+SV IKNPT++EEIICGLIKGGAAKLQ+ITDFDMTLS+FSY+GKRCPSCHNVIDN KLIT
Sbjct: 82 NSVHIKNPTRIEEIICGLIKGGAAKLQIITDFDMTLSQFSYKGKRCPSCHNVIDNYKLIT 141
Query: 458 DECREKLLQLKEKYYAIEIDPVLTVEEKYPYIVEWYTKSHGLLIEQALPKAKLKEIVEES 637
DECREKLLQLKEKYYAIE+DPVLT+EEKYPYIVEWYTKSH LL+EQALPKAKLKEIVEES
Sbjct: 142 DECREKLLQLKEKYYAIEVDPVLTIEEKYPYIVEWYTKSHSLLVEQALPKAKLKEIVEES 201
Query: 638 DIMLKEGYENFFDKLQQYNIPVFIFSAGIGDVLEEVIRQAGVYYPNVKVVSNFMDFDDNG 817
DIMLKEGYENFFDKLQQY+IPVFIFSAGIGDVLEEVIRQAGVYYPNVKVVSNFMDFDDNG
Sbjct: 202 DIMLKEGYENFFDKLQQYSIPVFIFSAGIGDVLEEVIRQAGVYYPNVKVVSNFMDFDDNG 261
Query: 818 LLRGFKGELIHVFNKHDGSLKNTEYFNQLKNNSNIILLGDSQGGLKMADGVANVEHILKI 997
LL+GFKGELIHVFNKHDGSLKNTEYFNQLKNNSNIILLGDSQG LKMADGVANVEHILKI
Sbjct: 262 LLKGFKGELIHVFNKHDGSLKNTEYFNQLKNNSNIILLGDSQGDLKMADGVANVEHILKI 321
Query: 998 GYLNDRVDELLE 1033
GYLNDRVDELLE
Sbjct: 322 GYLNDRVDELLE 333
Score = 39.7 bits (91), Expect(2) = e-157
Identities = 18/19 (94%), Positives = 19/19 (100%)
Frame = +1
Query: 1033 KYMDSYDIVLVRDESLDVA 1089
KYMDSYDIVLV+DESLDVA
Sbjct: 334 KYMDSYDIVLVKDESLDVA 352
>ref|NP_001032686.1| 5'-nucleotidase, cytosolic III [Bos taurus].
Length = 297
Score = 506 bits (1304), Expect(2) = e-148
Identities = 245/261 (93%), Positives = 256/261 (98%)
Frame = +2
Query: 251 IEMMPEFQKSSVRIKNPTKVEEIICGLIKGGAAKLQVITDFDMTLSRFSYRGKRCPSCHN 430
++MMPE QK+SV IKNPT+VEEIICGLIKGGAAKLQ+ITDFDMTLSRFSY+GKRCPSCHN
Sbjct: 10 VKMMPEIQKNSVHIKNPTRVEEIICGLIKGGAAKLQIITDFDMTLSRFSYKGKRCPSCHN 69
Query: 431 VIDNCKLITDECREKLLQLKEKYYAIEIDPVLTVEEKYPYIVEWYTKSHGLLIEQALPKA 610
VIDNCKLITDECREKLLQLKEKYYAIE+DP+LT+EEKYPYIVEWYTKSH LL+EQALPKA
Sbjct: 70 VIDNCKLITDECREKLLQLKEKYYAIEVDPLLTIEEKYPYIVEWYTKSHSLLVEQALPKA 129
Query: 611 KLKEIVEESDIMLKEGYENFFDKLQQYNIPVFIFSAGIGDVLEEVIRQAGVYYPNVKVVS 790
KLKEIVEESDIMLKEGYENFFDKLQQY IPVFIFSAGIGDVLEEVIRQAGVYYPNVKVVS
Sbjct: 130 KLKEIVEESDIMLKEGYENFFDKLQQYGIPVFIFSAGIGDVLEEVIRQAGVYYPNVKVVS 189
Query: 791 NFMDFDDNGLLRGFKGELIHVFNKHDGSLKNTEYFNQLKNNSNIILLGDSQGGLKMADGV 970
NFMDFDDNGLL+GFKGELIHVFNKHDGSLKNTEYFNQLKNNSNIILLGDSQG LKMADGV
Sbjct: 190 NFMDFDDNGLLKGFKGELIHVFNKHDGSLKNTEYFNQLKNNSNIILLGDSQGDLKMADGV 249
Query: 971 ANVEHILKIGYLNDRVDELLE 1033
ANVEHILKIGYLNDRVDELLE
Sbjct: 250 ANVEHILKIGYLNDRVDELLE 270
Score = 39.7 bits (91), Expect(2) = e-148
Identities = 18/19 (94%), Positives = 19/19 (100%)
Frame = +1
Query: 1033 KYMDSYDIVLVRDESLDVA 1089
KYMDSYDIVLV+DESLDVA
Sbjct: 271 KYMDSYDIVLVKDESLDVA 289
>ref|XP_001789872.1| PREDICTED: NT5C3 protein-like, partial [Bos taurus].
Length = 252
Score = 410 bits (1054), Expect = e-114
Identities = 203/248 (81%), Positives = 217/248 (87%)
Frame = +2
Query: 98 REAQEDPSMDXXXXXXXXXXXXXXXXXXXXXXXXXQYIFTLRRKTGRKTKIIEMMPEFQK 277
REA+E S+D QYIFTL+RKTGRKTKIIEMMPE QK
Sbjct: 5 REAKEARSVDRAAVARVGEVASASVCALVAGVVLAQYIFTLKRKTGRKTKIIEMMPEIQK 64
Query: 278 SSVRIKNPTKVEEIICGLIKGGAAKLQVITDFDMTLSRFSYRGKRCPSCHNVIDNCKLIT 457
+SV IKNPT++EEIICGLIKGGAAKLQ+ITDFDMTLS+FSY+GKRCPSCHNVIDN KLIT
Sbjct: 65 NSVHIKNPTRIEEIICGLIKGGAAKLQIITDFDMTLSQFSYKGKRCPSCHNVIDNYKLIT 124
Query: 458 DECREKLLQLKEKYYAIEIDPVLTVEEKYPYIVEWYTKSHGLLIEQALPKAKLKEIVEES 637
DECREKLLQLKEKYYAIE+DPVLT+EEKYPYIVEWYTKSH LL+EQALPKAKLKEIVEES
Sbjct: 125 DECREKLLQLKEKYYAIEVDPVLTIEEKYPYIVEWYTKSHSLLVEQALPKAKLKEIVEES 184
Query: 638 DIMLKEGYENFFDKLQQYNIPVFIFSAGIGDVLEEVIRQAGVYYPNVKVVSNFMDFDDNG 817
DIMLKEGYENFFDKLQQY+IPVFIFSAGIGDVLEEVIRQAGVYYPNVKVVSNFMDFDDNG
Sbjct: 185 DIMLKEGYENFFDKLQQYSIPVFIFSAGIGDVLEEVIRQAGVYYPNVKVVSNFMDFDDNG 244
Query: 818 LLRGFKGE 841
LL+GFKGE
Sbjct: 245 LLKGFKGE 252
>ref|NP_001068983.1| 5'-nucleotidase, cytosolic III-like [Bos taurus].
Length = 127
Score = 143 bits (361), Expect = 2e-34
Identities = 65/126 (51%), Positives = 97/126 (76%)
Frame = +2
Query: 275 KSSVRIKNPTKVEEIICGLIKGGAAKLQVITDFDMTLSRFSYRGKRCPSCHNVIDNCKLI 454
K++V ++ P +V+EI+ L KGG +LQVI+DFDMTLSRF+Y G RCPS +N++DN K+I
Sbjct: 2 KATVLMRQPGRVQEIVGALRKGGEDRLQVISDFDMTLSRFAYNGIRCPSSYNILDNSKII 61
Query: 455 TDECREKLLQLKEKYYAIEIDPVLTVEEKYPYIVEWYTKSHGLLIEQALPKAKLKEIVEE 634
++ECR++L L YY IEIDP T++EK P++VEW+TK+H LL +Q + K ++ ++V E
Sbjct: 62 SEECRKELKALFHHYYPIEIDPHRTIKEKLPHMVEWWTKAHDLLCQQKIQKFQIAQVVRE 121
Query: 635 SDIMLK 652
S+ ML+
Sbjct: 122 SNAMLR 127
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 34,430,725
Number of extensions: 781230
Number of successful extensions: 2587
Number of sequences better than 1.0e-05: 5
Number of HSP's gapped: 2586
Number of HSP's successfully gapped: 8
Length of query: 372
Length of database: 17,681,374
Length adjustment: 104
Effective length of query: 268
Effective length of database: 14,240,222
Effective search space: 3816379496
Effective search space used: 3816379496
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003917
(1118 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_852141.1| PREDICTED: similar to 5-nucleotidase, cytosolic... 513 e-150
Alignment gi|XP_532510.2| PREDICTED: similar to 5-nucleotidase, cytosolic... 481 e-141
Alignment gi|XP_865083.1| PREDICTED: similar to 5-nucleotidase, cytosolic... 481 e-141
Alignment gi|XP_548097.1| PREDICTED: similar to 5-nucleotidase, cytosolic... 312 2e-88
Alignment gi|XP_861418.1| PREDICTED: similar to 5-nucleotidase, cytosolic... 311 3e-88
Alignment gi|XP_861404.1| PREDICTED: similar to 5-nucleotidase, cytosolic... 229 1e-63
>ref|XP_852141.1| PREDICTED: similar to 5-nucleotidase, cytosolic III isoform 1 isoform
2 [Canis familiaris].
Length = 331
Score = 513 bits (1322), Expect(2) = e-150
Identities = 246/277 (88%), Positives = 268/277 (96%)
Frame = +2
Query: 203 QYIFTLRRKTGRKTKIIEMMPEFQKSSVRIKNPTKVEEIICGLIKGGAAKLQVITDFDMT 382
QYIFTL+RKTGRKTKIIEMMPEFQ+SSVRIKNP +VEEIICGLIKGGAAKLQ+ITDFDMT
Sbjct: 28 QYIFTLKRKTGRKTKIIEMMPEFQRSSVRIKNPARVEEIICGLIKGGAAKLQIITDFDMT 87
Query: 383 LSRFSYRGKRCPSCHNVIDNCKLITDECREKLLQLKEKYYAIEIDPVLTVEEKYPYIVEW 562
LSRFSY GKRCP+CH VIDN KL+TDECR+KLLQLKEKYYAIEIDPVLT+EEKYPY+VEW
Sbjct: 88 LSRFSYEGKRCPTCHYVIDNSKLVTDECRKKLLQLKEKYYAIEIDPVLTMEEKYPYMVEW 147
Query: 563 YTKSHGLLIEQALPKAKLKEIVEESDIMLKEGYENFFDKLQQYNIPVFIFSAGIGDVLEE 742
YTKSHGLL+EQALPKAKLKEIV ESD+MLKEGYENFFDKLQ+Y IPVFIFSAGIGD+LEE
Sbjct: 148 YTKSHGLLVEQALPKAKLKEIVAESDVMLKEGYENFFDKLQEYGIPVFIFSAGIGDILEE 207
Query: 743 VIRQAGVYYPNVKVVSNFMDFDDNGLLRGFKGELIHVFNKHDGSLKNTEYFNQLKNNSNI 922
VI QAGVY+PN+ VVSNFMDFDDNG+L+GFKGELIHVFNKHDG+LKNTEYFN+LK+NSNI
Sbjct: 208 VIHQAGVYHPNITVVSNFMDFDDNGVLKGFKGELIHVFNKHDGALKNTEYFNRLKDNSNI 267
Query: 923 ILLGDSQGGLKMADGVANVEHILKIGYLNDRVDELLE 1033
ILLGDSQG ++MADGVANVEHILKIGYLNDRVDELLE
Sbjct: 268 ILLGDSQGDIRMADGVANVEHILKIGYLNDRVDELLE 304
Score = 39.7 bits (91), Expect(2) = e-150
Identities = 18/19 (94%), Positives = 19/19 (100%)
Frame = +1
Query: 1033 KYMDSYDIVLVRDESLDVA 1089
KYMDSYDIVLV+DESLDVA
Sbjct: 305 KYMDSYDIVLVKDESLDVA 323
>ref|XP_532510.2| PREDICTED: similar to 5-nucleotidase, cytosolic III isoform 2 isoform
1 [Canis familiaris].
Length = 297
Score = 481 bits (1239), Expect(2) = e-141
Identities = 229/261 (87%), Positives = 252/261 (96%)
Frame = +2
Query: 251 IEMMPEFQKSSVRIKNPTKVEEIICGLIKGGAAKLQVITDFDMTLSRFSYRGKRCPSCHN 430
++MMPEFQ+SSVRIKNP +VEEIICGLIKGGAAKLQ+ITDFDMTLSRFSY GKRCP+CH
Sbjct: 10 VKMMPEFQRSSVRIKNPARVEEIICGLIKGGAAKLQIITDFDMTLSRFSYEGKRCPTCHY 69
Query: 431 VIDNCKLITDECREKLLQLKEKYYAIEIDPVLTVEEKYPYIVEWYTKSHGLLIEQALPKA 610
VIDN KL+TDECR+KLLQLKEKYYAIEIDPVLT+EEKYPY+VEWYTKSHGLL+EQALPKA
Sbjct: 70 VIDNSKLVTDECRKKLLQLKEKYYAIEIDPVLTMEEKYPYMVEWYTKSHGLLVEQALPKA 129
Query: 611 KLKEIVEESDIMLKEGYENFFDKLQQYNIPVFIFSAGIGDVLEEVIRQAGVYYPNVKVVS 790
KLKEIV ESD+MLKEGYENFFDKLQ+Y IPVFIFSAGIGD+LEEVI QAGVY+PN+ VVS
Sbjct: 130 KLKEIVAESDVMLKEGYENFFDKLQEYGIPVFIFSAGIGDILEEVIHQAGVYHPNITVVS 189
Query: 791 NFMDFDDNGLLRGFKGELIHVFNKHDGSLKNTEYFNQLKNNSNIILLGDSQGGLKMADGV 970
NFMDFDDNG+L+GFKGELIHVFNKHDG+LKNTEYFN+LK+NSNIILLGDSQG ++MADGV
Sbjct: 190 NFMDFDDNGVLKGFKGELIHVFNKHDGALKNTEYFNRLKDNSNIILLGDSQGDIRMADGV 249
Query: 971 ANVEHILKIGYLNDRVDELLE 1033
ANVEHILKIGYLNDRVDELLE
Sbjct: 250 ANVEHILKIGYLNDRVDELLE 270
Score = 39.7 bits (91), Expect(2) = e-141
Identities = 18/19 (94%), Positives = 19/19 (100%)
Frame = +1
Query: 1033 KYMDSYDIVLVRDESLDVA 1089
KYMDSYDIVLV+DESLDVA
Sbjct: 271 KYMDSYDIVLVKDESLDVA 289
>ref|XP_865083.1| PREDICTED: similar to 5-nucleotidase, cytosolic III isoform 2 isoform
3 [Canis familiaris].
Length = 297
Score = 481 bits (1239), Expect(2) = e-141
Identities = 229/261 (87%), Positives = 252/261 (96%)
Frame = +2
Query: 251 IEMMPEFQKSSVRIKNPTKVEEIICGLIKGGAAKLQVITDFDMTLSRFSYRGKRCPSCHN 430
++MMPEFQ+SSVRIKNP +VEEIICGLIKGGAAKLQ+ITDFDMTLSRFSY GKRCP+CH
Sbjct: 10 VKMMPEFQRSSVRIKNPARVEEIICGLIKGGAAKLQIITDFDMTLSRFSYEGKRCPTCHY 69
Query: 431 VIDNCKLITDECREKLLQLKEKYYAIEIDPVLTVEEKYPYIVEWYTKSHGLLIEQALPKA 610
VIDN KL+TDECR+KLLQLKEKYYAIEIDPVLT+EEKYPY+VEWYTKSHGLL+EQALPKA
Sbjct: 70 VIDNSKLVTDECRKKLLQLKEKYYAIEIDPVLTMEEKYPYMVEWYTKSHGLLVEQALPKA 129
Query: 611 KLKEIVEESDIMLKEGYENFFDKLQQYNIPVFIFSAGIGDVLEEVIRQAGVYYPNVKVVS 790
KLKEIV ESD+MLKEGYENFFDKLQ+Y IPVFIFSAGIGD+LEEVI QAGVY+PN+ VVS
Sbjct: 130 KLKEIVAESDVMLKEGYENFFDKLQEYGIPVFIFSAGIGDILEEVIHQAGVYHPNITVVS 189
Query: 791 NFMDFDDNGLLRGFKGELIHVFNKHDGSLKNTEYFNQLKNNSNIILLGDSQGGLKMADGV 970
NFMDFDDNG+L+GFKGELIHVFNKHDG+LKNTEYFN+LK+NSNIILLGDSQG ++MADGV
Sbjct: 190 NFMDFDDNGVLKGFKGELIHVFNKHDGALKNTEYFNRLKDNSNIILLGDSQGDIRMADGV 249
Query: 971 ANVEHILKIGYLNDRVDELLE 1033
ANVEHILKIGYLNDRVDELLE
Sbjct: 250 ANVEHILKIGYLNDRVDELLE 270
Score = 39.7 bits (91), Expect(2) = e-141
Identities = 18/19 (94%), Positives = 19/19 (100%)
Frame = +1
Query: 1033 KYMDSYDIVLVRDESLDVA 1089
KYMDSYDIVLV+DESLDVA
Sbjct: 271 KYMDSYDIVLVKDESLDVA 289
>ref|XP_548097.1| PREDICTED: similar to 5-nucleotidase, cytosolic III isoform 1 [Canis
familiaris].
Length = 300
Score = 312 bits (799), Expect(2) = 2e-88
Identities = 143/260 (55%), Positives = 203/260 (78%)
Frame = +2
Query: 254 EMMPEFQKSSVRIKNPTKVEEIICGLIKGGAAKLQVITDFDMTLSRFSYRGKRCPSCHNV 433
E + K++V ++ P +V+EI+ L +GG +LQ+I+DFDMTLSRF+Y GKRCPS +N+
Sbjct: 3 EEVSTLMKATVLMRQPGRVQEIVGALRRGGGDRLQIISDFDMTLSRFAYNGKRCPSSYNI 62
Query: 434 IDNCKLITDECREKLLQLKEKYYAIEIDPVLTVEEKYPYIVEWYTKSHGLLIEQALPKAK 613
+DN K+I++ECR +L L YY IEIDP T++EK P++VEW+TK+H LL +Q + K +
Sbjct: 63 LDNSKIISEECRNELKALLHHYYPIEIDPHRTIKEKLPHMVEWWTKAHDLLCQQKIQKFQ 122
Query: 614 LKEIVEESDIMLKEGYENFFDKLQQYNIPVFIFSAGIGDVLEEVIRQAGVYYPNVKVVSN 793
+ ++V+ES+ ML+EGY+ FF+ L Q NIP+FIFSAGIGD+LEE+IRQ V++PN+ +VSN
Sbjct: 123 IAQVVKESNAMLREGYKTFFNTLYQNNIPLFIFSAGIGDILEEIIRQMKVFHPNIHIVSN 182
Query: 794 FMDFDDNGLLRGFKGELIHVFNKHDGSLKNTEYFNQLKNNSNIILLGDSQGGLKMADGVA 973
+MDFD++G L+GFKG+LIH +NK+ +N+ YF QL+ +NI+LLGDS G L MADGV
Sbjct: 183 YMDFDEDGFLQGFKGQLIHTYNKNSSVCENSGYFQQLQGKTNILLLGDSMGDLTMADGVP 242
Query: 974 NVEHILKIGYLNDRVDELLE 1033
VE+ILKIG+LND+V+E E
Sbjct: 243 GVENILKIGFLNDKVEERRE 262
Score = 33.5 bits (75), Expect(2) = 2e-88
Identities = 14/18 (77%), Positives = 17/18 (94%)
Frame = +1
Query: 1033 KYMDSYDIVLVRDESLDV 1086
+YMDSYDIVL +DE+LDV
Sbjct: 263 RYMDSYDIVLEKDETLDV 280
>ref|XP_861418.1| PREDICTED: similar to 5-nucleotidase, cytosolic III isoform 3 [Canis
familiaris].
Length = 292
Score = 311 bits (797), Expect(2) = 3e-88
Identities = 142/253 (56%), Positives = 201/253 (79%)
Frame = +2
Query: 275 KSSVRIKNPTKVEEIICGLIKGGAAKLQVITDFDMTLSRFSYRGKRCPSCHNVIDNCKLI 454
K++V ++ P +V+EI+ L +GG +LQ+I+DFDMTLSRF+Y GKRCPS +N++DN K+I
Sbjct: 2 KATVLMRQPGRVQEIVGALRRGGGDRLQIISDFDMTLSRFAYNGKRCPSSYNILDNSKII 61
Query: 455 TDECREKLLQLKEKYYAIEIDPVLTVEEKYPYIVEWYTKSHGLLIEQALPKAKLKEIVEE 634
++ECR +L L YY IEIDP T++EK P++VEW+TK+H LL +Q + K ++ ++V+E
Sbjct: 62 SEECRNELKALLHHYYPIEIDPHRTIKEKLPHMVEWWTKAHDLLCQQKIQKFQIAQVVKE 121
Query: 635 SDIMLKEGYENFFDKLQQYNIPVFIFSAGIGDVLEEVIRQAGVYYPNVKVVSNFMDFDDN 814
S+ ML+EGY+ FF+ L Q NIP+FIFSAGIGD+LEE+IRQ V++PN+ +VSN+MDFD++
Sbjct: 122 SNAMLREGYKTFFNTLYQNNIPLFIFSAGIGDILEEIIRQMKVFHPNIHIVSNYMDFDED 181
Query: 815 GLLRGFKGELIHVFNKHDGSLKNTEYFNQLKNNSNIILLGDSQGGLKMADGVANVEHILK 994
G L+GFKG+LIH +NK+ +N+ YF QL+ +NI+LLGDS G L MADGV VE+ILK
Sbjct: 182 GFLQGFKGQLIHTYNKNSSVCENSGYFQQLQGKTNILLLGDSMGDLTMADGVPGVENILK 241
Query: 995 IGYLNDRVDELLE 1033
IG+LND+V+E E
Sbjct: 242 IGFLNDKVEERRE 254
Score = 33.5 bits (75), Expect(2) = 3e-88
Identities = 14/18 (77%), Positives = 17/18 (94%)
Frame = +1
Query: 1033 KYMDSYDIVLVRDESLDV 1086
+YMDSYDIVL +DE+LDV
Sbjct: 255 RYMDSYDIVLEKDETLDV 272
>ref|XP_861404.1| PREDICTED: similar to 5-nucleotidase, cytosolic III isoform 2 [Canis
familiaris].
Length = 227
Score = 229 bits (584), Expect(2) = 1e-63
Identities = 106/187 (56%), Positives = 147/187 (78%)
Frame = +2
Query: 473 KLLQLKEKYYAIEIDPVLTVEEKYPYIVEWYTKSHGLLIEQALPKAKLKEIVEESDIMLK 652
+L L YY IEIDP T++EK P++VEW+TK+H LL +Q + K ++ ++V+ES+ ML+
Sbjct: 3 QLKALLHHYYPIEIDPHRTIKEKLPHMVEWWTKAHDLLCQQKIQKFQIAQVVKESNAMLR 62
Query: 653 EGYENFFDKLQQYNIPVFIFSAGIGDVLEEVIRQAGVYYPNVKVVSNFMDFDDNGLLRGF 832
EGY+ FF+ L Q NIP+FIFSAGIGD+LEE+IRQ V++PN+ +VSN+MDFD++G L+GF
Sbjct: 63 EGYKTFFNTLYQNNIPLFIFSAGIGDILEEIIRQMKVFHPNIHIVSNYMDFDEDGFLQGF 122
Query: 833 KGELIHVFNKHDGSLKNTEYFNQLKNNSNIILLGDSQGGLKMADGVANVEHILKIGYLND 1012
KG+LIH +NK+ +N+ YF QL+ +NI+LLGDS G L MADGV VE+ILKIG+LND
Sbjct: 123 KGQLIHTYNKNSSVCENSGYFQQLQGKTNILLLGDSMGDLTMADGVPGVENILKIGFLND 182
Query: 1013 RVDELLE 1033
+V+E E
Sbjct: 183 KVEERRE 189
Score = 33.5 bits (75), Expect(2) = 1e-63
Identities = 14/18 (77%), Positives = 17/18 (94%)
Frame = +1
Query: 1033 KYMDSYDIVLVRDESLDV 1086
+YMDSYDIVL +DE+LDV
Sbjct: 190 RYMDSYDIVLEKDETLDV 207
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 36,112,092
Number of extensions: 812428
Number of successful extensions: 3018
Number of sequences better than 1.0e-05: 6
Number of HSP's gapped: 3007
Number of HSP's successfully gapped: 12
Length of query: 372
Length of database: 18,874,504
Length adjustment: 104
Effective length of query: 268
Effective length of database: 15,407,560
Effective search space: 4129226080
Effective search space used: 4129226080
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003917
(1118 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001002010.1| cytosolic 5'-nucleotidase 3 isoform 1 [Homo ... 525 e-154
Alignment gi|NP_057573.2| cytosolic 5'-nucleotidase 3 isoform 2 [Homo sap... 493 e-144
Alignment gi|NP_001159590.1| cytosolic 5'-nucleotidase 3 isoform 3 [Homo ... 490 e-143
Alignment gi|NP_443167.4| cytosolic 5'-nucleotidase III-like protein [Hom... 310 7e-88
>ref|NP_001002010.1| cytosolic 5'-nucleotidase 3 isoform 1 [Homo sapiens].
Length = 336
Score = 525 bits (1353), Expect(2) = e-154
Identities = 251/277 (90%), Positives = 274/277 (98%)
Frame = +2
Query: 203 QYIFTLRRKTGRKTKIIEMMPEFQKSSVRIKNPTKVEEIICGLIKGGAAKLQVITDFDMT 382
QYIFTL+RKTGRKTKIIEMMPEFQKSSVRIKNPT+VEEIICGLIKGGAAKLQ+ITDFDMT
Sbjct: 33 QYIFTLKRKTGRKTKIIEMMPEFQKSSVRIKNPTRVEEIICGLIKGGAAKLQIITDFDMT 92
Query: 383 LSRFSYRGKRCPSCHNVIDNCKLITDECREKLLQLKEKYYAIEIDPVLTVEEKYPYIVEW 562
LSRFSY+GKRCP+CHN+IDNCKL+TDECR+KLLQLKEKYYAIE+DPVLTVEEKYPY+VEW
Sbjct: 93 LSRFSYKGKRCPTCHNIIDNCKLVTDECRKKLLQLKEKYYAIEVDPVLTVEEKYPYMVEW 152
Query: 563 YTKSHGLLIEQALPKAKLKEIVEESDIMLKEGYENFFDKLQQYNIPVFIFSAGIGDVLEE 742
YTKSHGLL++QALPKAKLKEIV ESD+MLKEGYENFFDKLQQ++IPVFIFSAGIGDVLEE
Sbjct: 153 YTKSHGLLVQQALPKAKLKEIVAESDVMLKEGYENFFDKLQQHSIPVFIFSAGIGDVLEE 212
Query: 743 VIRQAGVYYPNVKVVSNFMDFDDNGLLRGFKGELIHVFNKHDGSLKNTEYFNQLKNNSNI 922
VIRQAGVY+PNVKVVSNFMDFD+ G+L+GFKGELIHVFNKHDG+L+NTEYFNQLK+NSNI
Sbjct: 213 VIRQAGVYHPNVKVVSNFMDFDETGVLKGFKGELIHVFNKHDGALRNTEYFNQLKDNSNI 272
Query: 923 ILLGDSQGGLKMADGVANVEHILKIGYLNDRVDELLE 1033
ILLGDSQG L+MADGVANVEHILKIGYLNDRVDELLE
Sbjct: 273 ILLGDSQGDLRMADGVANVEHILKIGYLNDRVDELLE 309
Score = 37.7 bits (86), Expect(2) = e-154
Identities = 17/19 (89%), Positives = 19/19 (100%)
Frame = +1
Query: 1033 KYMDSYDIVLVRDESLDVA 1089
KYMDSYDIVLV+DESL+VA
Sbjct: 310 KYMDSYDIVLVQDESLEVA 328
>ref|NP_057573.2| cytosolic 5'-nucleotidase 3 isoform 2 [Homo sapiens].
Length = 297
Score = 493 bits (1270), Expect(2) = e-144
Identities = 234/261 (89%), Positives = 258/261 (98%)
Frame = +2
Query: 251 IEMMPEFQKSSVRIKNPTKVEEIICGLIKGGAAKLQVITDFDMTLSRFSYRGKRCPSCHN 430
++MMPEFQKSSVRIKNPT+VEEIICGLIKGGAAKLQ+ITDFDMTLSRFSY+GKRCP+CHN
Sbjct: 10 VKMMPEFQKSSVRIKNPTRVEEIICGLIKGGAAKLQIITDFDMTLSRFSYKGKRCPTCHN 69
Query: 431 VIDNCKLITDECREKLLQLKEKYYAIEIDPVLTVEEKYPYIVEWYTKSHGLLIEQALPKA 610
+IDNCKL+TDECR+KLLQLKEKYYAIE+DPVLTVEEKYPY+VEWYTKSHGLL++QALPKA
Sbjct: 70 IIDNCKLVTDECRKKLLQLKEKYYAIEVDPVLTVEEKYPYMVEWYTKSHGLLVQQALPKA 129
Query: 611 KLKEIVEESDIMLKEGYENFFDKLQQYNIPVFIFSAGIGDVLEEVIRQAGVYYPNVKVVS 790
KLKEIV ESD+MLKEGYENFFDKLQQ++IPVFIFSAGIGDVLEEVIRQAGVY+PNVKVVS
Sbjct: 130 KLKEIVAESDVMLKEGYENFFDKLQQHSIPVFIFSAGIGDVLEEVIRQAGVYHPNVKVVS 189
Query: 791 NFMDFDDNGLLRGFKGELIHVFNKHDGSLKNTEYFNQLKNNSNIILLGDSQGGLKMADGV 970
NFMDFD+ G+L+GFKGELIHVFNKHDG+L+NTEYFNQLK+NSNIILLGDSQG L+MADGV
Sbjct: 190 NFMDFDETGVLKGFKGELIHVFNKHDGALRNTEYFNQLKDNSNIILLGDSQGDLRMADGV 249
Query: 971 ANVEHILKIGYLNDRVDELLE 1033
ANVEHILKIGYLNDRVDELLE
Sbjct: 250 ANVEHILKIGYLNDRVDELLE 270
Score = 37.7 bits (86), Expect(2) = e-144
Identities = 17/19 (89%), Positives = 19/19 (100%)
Frame = +1
Query: 1033 KYMDSYDIVLVRDESLDVA 1089
KYMDSYDIVLV+DESL+VA
Sbjct: 271 KYMDSYDIVLVQDESLEVA 289
>ref|NP_001159590.1| cytosolic 5'-nucleotidase 3 isoform 3 [Homo sapiens].
Length = 285
Score = 490 bits (1261), Expect(2) = e-143
Identities = 233/258 (90%), Positives = 255/258 (98%)
Frame = +2
Query: 260 MPEFQKSSVRIKNPTKVEEIICGLIKGGAAKLQVITDFDMTLSRFSYRGKRCPSCHNVID 439
MPEFQKSSVRIKNPT+VEEIICGLIKGGAAKLQ+ITDFDMTLSRFSY+GKRCP+CHN+ID
Sbjct: 1 MPEFQKSSVRIKNPTRVEEIICGLIKGGAAKLQIITDFDMTLSRFSYKGKRCPTCHNIID 60
Query: 440 NCKLITDECREKLLQLKEKYYAIEIDPVLTVEEKYPYIVEWYTKSHGLLIEQALPKAKLK 619
NCKL+TDECR+KLLQLKEKYYAIE+DPVLTVEEKYPY+VEWYTKSHGLL++QALPKAKLK
Sbjct: 61 NCKLVTDECRKKLLQLKEKYYAIEVDPVLTVEEKYPYMVEWYTKSHGLLVQQALPKAKLK 120
Query: 620 EIVEESDIMLKEGYENFFDKLQQYNIPVFIFSAGIGDVLEEVIRQAGVYYPNVKVVSNFM 799
EIV ESD+MLKEGYENFFDKLQQ++IPVFIFSAGIGDVLEEVIRQAGVY+PNVKVVSNFM
Sbjct: 121 EIVAESDVMLKEGYENFFDKLQQHSIPVFIFSAGIGDVLEEVIRQAGVYHPNVKVVSNFM 180
Query: 800 DFDDNGLLRGFKGELIHVFNKHDGSLKNTEYFNQLKNNSNIILLGDSQGGLKMADGVANV 979
DFD+ G+L+GFKGELIHVFNKHDG+L+NTEYFNQLK+NSNIILLGDSQG L+MADGVANV
Sbjct: 181 DFDETGVLKGFKGELIHVFNKHDGALRNTEYFNQLKDNSNIILLGDSQGDLRMADGVANV 240
Query: 980 EHILKIGYLNDRVDELLE 1033
EHILKIGYLNDRVDELLE
Sbjct: 241 EHILKIGYLNDRVDELLE 258
Score = 37.7 bits (86), Expect(2) = e-143
Identities = 17/19 (89%), Positives = 19/19 (100%)
Frame = +1
Query: 1033 KYMDSYDIVLVRDESLDVA 1089
KYMDSYDIVLV+DESL+VA
Sbjct: 259 KYMDSYDIVLVQDESLEVA 277
>ref|NP_443167.4| cytosolic 5'-nucleotidase III-like protein [Homo sapiens].
Length = 300
Score = 310 bits (794), Expect(2) = 7e-88
Identities = 143/260 (55%), Positives = 203/260 (78%)
Frame = +2
Query: 254 EMMPEFQKSSVRIKNPTKVEEIICGLIKGGAAKLQVITDFDMTLSRFSYRGKRCPSCHNV 433
E + K++V ++ P +V+EI+ L KGG +LQVI+DFDMTLSRF+Y GKRCPS +N+
Sbjct: 3 EEVSTLMKATVLMRQPGRVQEIVGALRKGGGDRLQVISDFDMTLSRFAYNGKRCPSSYNI 62
Query: 434 IDNCKLITDECREKLLQLKEKYYAIEIDPVLTVEEKYPYIVEWYTKSHGLLIEQALPKAK 613
+DN K+I++ECR++L L YY IEIDP TV+EK P++VEW+TK+H LL +Q + K +
Sbjct: 63 LDNSKIISEECRKELTALLHHYYPIEIDPHRTVKEKLPHMVEWWTKAHNLLCQQKIQKFQ 122
Query: 614 LKEIVEESDIMLKEGYENFFDKLQQYNIPVFIFSAGIGDVLEEVIRQAGVYYPNVKVVSN 793
+ ++V ES+ ML+EGY+ FF+ L NIP+FIFSAGIGD+LEE+IRQ V++PN+ +VSN
Sbjct: 123 IAQVVRESNAMLREGYKTFFNTLYHNNIPLFIFSAGIGDILEEIIRQMKVFHPNIHIVSN 182
Query: 794 FMDFDDNGLLRGFKGELIHVFNKHDGSLKNTEYFNQLKNNSNIILLGDSQGGLKMADGVA 973
+MDF+++G L+GFKG+LIH +NK+ + +N+ YF QL+ +N+ILLGDS G L MADGV
Sbjct: 183 YMDFNEDGFLQGFKGQLIHTYNKNSSACENSGYFQQLEGKTNVILLGDSIGDLTMADGVP 242
Query: 974 NVEHILKIGYLNDRVDELLE 1033
V++ILKIG+LND+V+E E
Sbjct: 243 GVQNILKIGFLNDKVEERRE 262
Score = 33.5 bits (75), Expect(2) = 7e-88
Identities = 14/18 (77%), Positives = 17/18 (94%)
Frame = +1
Query: 1033 KYMDSYDIVLVRDESLDV 1086
+YMDSYDIVL +DE+LDV
Sbjct: 263 RYMDSYDIVLEKDETLDV 280
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 35,493,781
Number of extensions: 806465
Number of successful extensions: 2739
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 2734
Number of HSP's successfully gapped: 8
Length of query: 372
Length of database: 18,297,164
Length adjustment: 104
Effective length of query: 268
Effective length of database: 14,868,908
Effective search space: 3984867344
Effective search space used: 3984867344
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003917
(1118 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_080280.3| cytosolic 5'-nucleotidase 3 [Mus musculus]. 513 e-149
Alignment gi|NP_001096120.1| cytosolic 5'-nucleotidase III-like protein i... 312 2e-88
Alignment gi|NP_080837.3| cytosolic 5'-nucleotidase III-like protein isof... 309 2e-84
>ref|NP_080280.3| cytosolic 5'-nucleotidase 3 [Mus musculus].
Length = 331
Score = 513 bits (1322), Expect(2) = e-149
Identities = 246/277 (88%), Positives = 269/277 (97%)
Frame = +2
Query: 203 QYIFTLRRKTGRKTKIIEMMPEFQKSSVRIKNPTKVEEIICGLIKGGAAKLQVITDFDMT 382
QYIFTL+RKTGRKTKIIEMMPEFQKSSVRIKNPT+VEEIICGLIKGGAAKLQ+ITDFDMT
Sbjct: 28 QYIFTLKRKTGRKTKIIEMMPEFQKSSVRIKNPTRVEEIICGLIKGGAAKLQIITDFDMT 87
Query: 383 LSRFSYRGKRCPSCHNVIDNCKLITDECREKLLQLKEKYYAIEIDPVLTVEEKYPYIVEW 562
LSRFSY GKRCP+CHN+IDNCKL+TDECR KLLQLKE+YYAIE+DPVLTVEEK+PY+VEW
Sbjct: 88 LSRFSYNGKRCPTCHNIIDNCKLVTDECRRKLLQLKEQYYAIEVDPVLTVEEKFPYMVEW 147
Query: 563 YTKSHGLLIEQALPKAKLKEIVEESDIMLKEGYENFFDKLQQYNIPVFIFSAGIGDVLEE 742
YTKSHGLLIEQ +PKAKLKEIV +SD+MLKEGYENFF KLQQ+ IPVFIFSAGIGDVLEE
Sbjct: 148 YTKSHGLLIEQGIPKAKLKEIVADSDVMLKEGYENFFGKLQQHGIPVFIFSAGIGDVLEE 207
Query: 743 VIRQAGVYYPNVKVVSNFMDFDDNGLLRGFKGELIHVFNKHDGSLKNTEYFNQLKNNSNI 922
VIRQAGVY+ NVKVVSNFMDFD+NG+L+GFKGELIHVFNKHDG+LKNT+YF+QLK+NSNI
Sbjct: 208 VIRQAGVYHSNVKVVSNFMDFDENGVLKGFKGELIHVFNKHDGALKNTDYFSQLKDNSNI 267
Query: 923 ILLGDSQGGLKMADGVANVEHILKIGYLNDRVDELLE 1033
ILLGDSQG L+MADGVANVEHILKIGYLNDRVDELLE
Sbjct: 268 ILLGDSQGDLRMADGVANVEHILKIGYLNDRVDELLE 304
Score = 35.0 bits (79), Expect(2) = e-149
Identities = 15/18 (83%), Positives = 18/18 (100%)
Frame = +1
Query: 1033 KYMDSYDIVLVRDESLDV 1086
KYMDSYDIVLV++ESL+V
Sbjct: 305 KYMDSYDIVLVKEESLEV 322
>ref|NP_001096120.1| cytosolic 5'-nucleotidase III-like protein isoform 1 [Mus musculus].
Length = 300
Score = 312 bits (799), Expect(2) = 2e-88
Identities = 142/260 (54%), Positives = 203/260 (78%)
Frame = +2
Query: 254 EMMPEFQKSSVRIKNPTKVEEIICGLIKGGAAKLQVITDFDMTLSRFSYRGKRCPSCHNV 433
E + K++V ++ P +V+EI+ L +GG +LQVI+DFDMTLSRF+Y G+RCPS HN+
Sbjct: 3 EEVSSLMKATVLMRQPGRVQEIVGALRRGGGDRLQVISDFDMTLSRFAYNGQRCPSSHNI 62
Query: 434 IDNCKLITDECREKLLQLKEKYYAIEIDPVLTVEEKYPYIVEWYTKSHGLLIEQALPKAK 613
+DN K+I+++CR++L +L YY IEIDP T++EK P++V+W++K+H LL +Q + K +
Sbjct: 63 LDNSKIISEDCRKELTELFHHYYPIEIDPHRTIKEKLPHMVQWWSKAHSLLCQQRIQKVQ 122
Query: 614 LKEIVEESDIMLKEGYENFFDKLQQYNIPVFIFSAGIGDVLEEVIRQAGVYYPNVKVVSN 793
+ ++V ES ML+EGY+ FFD L Q NIP+FIFSAGIGD+LEE+IRQ V++PN+ +VSN
Sbjct: 123 IAQVVGESTAMLREGYKTFFDTLYQNNIPLFIFSAGIGDILEEIIRQMKVFHPNIHIVSN 182
Query: 794 FMDFDDNGLLRGFKGELIHVFNKHDGSLKNTEYFNQLKNNSNIILLGDSQGGLKMADGVA 973
+MDF ++G L+GFKG+LIH +NK+ +N+ YF QL+N +NIILLGDS G L MADGV
Sbjct: 183 YMDFSEDGFLKGFKGQLIHTYNKNSSVCENSSYFQQLQNKTNIILLGDSIGDLTMADGVP 242
Query: 974 NVEHILKIGYLNDRVDELLE 1033
V++ILKIG+LND+V+E E
Sbjct: 243 GVQNILKIGFLNDKVEERRE 262
Score = 33.5 bits (75), Expect(2) = 2e-88
Identities = 14/18 (77%), Positives = 17/18 (94%)
Frame = +1
Query: 1033 KYMDSYDIVLVRDESLDV 1086
+YMDSYDIVL +DE+LDV
Sbjct: 263 RYMDSYDIVLEKDETLDV 280
>ref|NP_080837.3| cytosolic 5'-nucleotidase III-like protein isoform 2 [Mus musculus].
Length = 261
Score = 309 bits (792), Expect = 2e-84
Identities = 140/257 (54%), Positives = 201/257 (78%)
Frame = +2
Query: 254 EMMPEFQKSSVRIKNPTKVEEIICGLIKGGAAKLQVITDFDMTLSRFSYRGKRCPSCHNV 433
E + K++V ++ P +V+EI+ L +GG +LQVI+DFDMTLSRF+Y G+RCPS HN+
Sbjct: 3 EEVSSLMKATVLMRQPGRVQEIVGALRRGGGDRLQVISDFDMTLSRFAYNGQRCPSSHNI 62
Query: 434 IDNCKLITDECREKLLQLKEKYYAIEIDPVLTVEEKYPYIVEWYTKSHGLLIEQALPKAK 613
+DN K+I+++CR++L +L YY IEIDP T++EK P++V+W++K+H LL +Q + K +
Sbjct: 63 LDNSKIISEDCRKELTELFHHYYPIEIDPHRTIKEKLPHMVQWWSKAHSLLCQQRIQKVQ 122
Query: 614 LKEIVEESDIMLKEGYENFFDKLQQYNIPVFIFSAGIGDVLEEVIRQAGVYYPNVKVVSN 793
+ ++V ES ML+EGY+ FFD L Q NIP+FIFSAGIGD+LEE+IRQ V++PN+ +VSN
Sbjct: 123 IAQVVGESTAMLREGYKTFFDTLYQNNIPLFIFSAGIGDILEEIIRQMKVFHPNIHIVSN 182
Query: 794 FMDFDDNGLLRGFKGELIHVFNKHDGSLKNTEYFNQLKNNSNIILLGDSQGGLKMADGVA 973
+MDF ++G L+GFKG+LIH +NK+ +N+ YF QL+N +NIILLGDS G L MADGV
Sbjct: 183 YMDFSEDGFLKGFKGQLIHTYNKNSSVCENSSYFQQLQNKTNIILLGDSIGDLTMADGVP 242
Query: 974 NVEHILKIGYLNDRVDE 1024
V++ILKIG+LND++ E
Sbjct: 243 GVQNILKIGFLNDKLPE 259
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 30,291,076
Number of extensions: 683872
Number of successful extensions: 2220
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 2219
Number of HSP's successfully gapped: 5
Length of query: 372
Length of database: 15,617,559
Length adjustment: 103
Effective length of query: 269
Effective length of database: 12,523,851
Effective search space: 3368915919
Effective search space used: 3368915919
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003917
(1118 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_003360215.1| PREDICTED: cytosolic 5'-nucleotidase 3-like ... 556 e-164
Alignment gi|XP_003360214.1| PREDICTED: cytosolic 5'-nucleotidase 3-like ... 523 e-154
Alignment gi|XP_003131461.1| PREDICTED: cytosolic 5'-nucleotidase III-lik... 304 2e-86
>ref|XP_003360215.1| PREDICTED: cytosolic 5'-nucleotidase 3-like isoform 2 [Sus scrofa].
Length = 331
Score = 556 bits (1432), Expect(2) = e-164
Identities = 276/277 (99%), Positives = 276/277 (99%)
Frame = +2
Query: 203 QYIFTLRRKTGRKTKIIEMMPEFQKSSVRIKNPTKVEEIICGLIKGGAAKLQVITDFDMT 382
QYIFTLRRKTGRKTKIIEMMPEFQKSSVRIKNPTKVEEIICGLIKGGAAKLQVITDFDMT
Sbjct: 28 QYIFTLRRKTGRKTKIIEMMPEFQKSSVRIKNPTKVEEIICGLIKGGAAKLQVITDFDMT 87
Query: 383 LSRFSYRGKRCPSCHNVIDNCKLITDECREKLLQLKEKYYAIEIDPVLTVEEKYPYIVEW 562
LSRFSYRGKRCPSCHNVIDNCKLITDECREKLLQLKEKYYAIEIDPVLTVEEKYPYIVEW
Sbjct: 88 LSRFSYRGKRCPSCHNVIDNCKLITDECREKLLQLKEKYYAIEIDPVLTVEEKYPYIVEW 147
Query: 563 YTKSHGLLIEQALPKAKLKEIVEESDIMLKEGYENFFDKLQQYNIPVFIFSAGIGDVLEE 742
YTKSHGLLIEQALPKAKLKEIVEESDIMLKEGYENFFDKLQQYNIPVFIFSAGIGDVLEE
Sbjct: 148 YTKSHGLLIEQALPKAKLKEIVEESDIMLKEGYENFFDKLQQYNIPVFIFSAGIGDVLEE 207
Query: 743 VIRQAGVYYPNVKVVSNFMDFDDNGLLRGFKGELIHVFNKHDGSLKNTEYFNQLKNNSNI 922
VIRQAGVYYPNVKVVSNFMDFDDNGLLRGFKGELIHVFNKHDGSLKNTEYFNQLKNNSNI
Sbjct: 208 VIRQAGVYYPNVKVVSNFMDFDDNGLLRGFKGELIHVFNKHDGSLKNTEYFNQLKNNSNI 267
Query: 923 ILLGDSQGGLKMADGVANVEHILKIGYLNDRVDELLE 1033
ILLGDSQG LKMADGVANVEHILKIGYLNDRVDELLE
Sbjct: 268 ILLGDSQGDLKMADGVANVEHILKIGYLNDRVDELLE 304
Score = 40.8 bits (94), Expect(2) = e-164
Identities = 19/19 (100%), Positives = 19/19 (100%)
Frame = +1
Query: 1033 KYMDSYDIVLVRDESLDVA 1089
KYMDSYDIVLVRDESLDVA
Sbjct: 305 KYMDSYDIVLVRDESLDVA 323
>ref|XP_003360214.1| PREDICTED: cytosolic 5'-nucleotidase 3-like isoform 1 [Sus scrofa].
Length = 295
Score = 523 bits (1346), Expect(2) = e-154
Identities = 258/261 (98%), Positives = 260/261 (99%)
Frame = +2
Query: 251 IEMMPEFQKSSVRIKNPTKVEEIICGLIKGGAAKLQVITDFDMTLSRFSYRGKRCPSCHN 430
++MMPEFQKSSVRIKNPTKVEEIICGLIKGGAAKLQVITDFDMTLSRFSYRGKRCPSCHN
Sbjct: 8 VKMMPEFQKSSVRIKNPTKVEEIICGLIKGGAAKLQVITDFDMTLSRFSYRGKRCPSCHN 67
Query: 431 VIDNCKLITDECREKLLQLKEKYYAIEIDPVLTVEEKYPYIVEWYTKSHGLLIEQALPKA 610
VIDNCKLITDECREKLLQLKEKYYAIEIDPVLTVEEKYPYIVEWYTKSHGLLIEQALPKA
Sbjct: 68 VIDNCKLITDECREKLLQLKEKYYAIEIDPVLTVEEKYPYIVEWYTKSHGLLIEQALPKA 127
Query: 611 KLKEIVEESDIMLKEGYENFFDKLQQYNIPVFIFSAGIGDVLEEVIRQAGVYYPNVKVVS 790
KLKEIVEESDIMLKEGYENFFDKLQQYNIPVFIFSAGIGDVLEEVIRQAGVYYPNVKVVS
Sbjct: 128 KLKEIVEESDIMLKEGYENFFDKLQQYNIPVFIFSAGIGDVLEEVIRQAGVYYPNVKVVS 187
Query: 791 NFMDFDDNGLLRGFKGELIHVFNKHDGSLKNTEYFNQLKNNSNIILLGDSQGGLKMADGV 970
NFMDFDDNGLLRGFKGELIHVFNKHDGSLKNTEYFNQLKNNSNIILLGDSQG LKMADGV
Sbjct: 188 NFMDFDDNGLLRGFKGELIHVFNKHDGSLKNTEYFNQLKNNSNIILLGDSQGDLKMADGV 247
Query: 971 ANVEHILKIGYLNDRVDELLE 1033
ANVEHILKIGYLNDRVDELLE
Sbjct: 248 ANVEHILKIGYLNDRVDELLE 268
Score = 40.8 bits (94), Expect(2) = e-154
Identities = 19/19 (100%), Positives = 19/19 (100%)
Frame = +1
Query: 1033 KYMDSYDIVLVRDESLDVA 1089
KYMDSYDIVLVRDESLDVA
Sbjct: 269 KYMDSYDIVLVRDESLDVA 287
>ref|XP_003131461.1| PREDICTED: cytosolic 5'-nucleotidase III-like protein-like [Sus
scrofa].
Length = 300
Score = 304 bits (779), Expect(2) = 2e-86
Identities = 141/260 (54%), Positives = 199/260 (76%)
Frame = +2
Query: 254 EMMPEFQKSSVRIKNPTKVEEIICGLIKGGAAKLQVITDFDMTLSRFSYRGKRCPSCHNV 433
E + K++V ++ P +V+EI+ L KGG +LQVI+DFDMTLSRF+Y GKRCPS +N+
Sbjct: 3 EEVSPLMKATVLMRQPGRVQEIVGALRKGGGDRLQVISDFDMTLSRFAYNGKRCPSSYNI 62
Query: 434 IDNCKLITDECREKLLQLKEKYYAIEIDPVLTVEEKYPYIVEWYTKSHGLLIEQALPKAK 613
+DN K+I++ECR++L L YY IEIDP T++EK P++VEW+TK+H LL +Q + K +
Sbjct: 63 LDNSKIISEECRKELKALLHHYYPIEIDPDRTIKEKLPHMVEWWTKAHDLLCQQKIQKFQ 122
Query: 614 LKEIVEESDIMLKEGYENFFDKLQQYNIPVFIFSAGIGDVLEEVIRQAGVYYPNVKVVSN 793
+ ++V ES ML++GY+ FF L Q ++P+ IFSAGIGDVLEE+IRQ V++PN+ VVSN
Sbjct: 123 IAQVVRESSAMLRDGYKTFFHTLSQNHVPLLIFSAGIGDVLEEIIRQRRVFHPNIHVVSN 182
Query: 794 FMDFDDNGLLRGFKGELIHVFNKHDGSLKNTEYFNQLKNNSNIILLGDSQGGLKMADGVA 973
+M+FD+ G L+GFKG+LIH +NK+ +N+ +F QL+ +NI+LLGDS G L MADGV
Sbjct: 183 YMEFDEEGFLKGFKGQLIHTYNKNSSVCENSTFFQQLQGKTNILLLGDSLGDLTMADGVP 242
Query: 974 NVEHILKIGYLNDRVDELLE 1033
VE+ILKIG+LND+V+E E
Sbjct: 243 GVENILKIGFLNDKVEEWRE 262
Score = 33.5 bits (75), Expect(2) = 2e-86
Identities = 14/18 (77%), Positives = 17/18 (94%)
Frame = +1
Query: 1033 KYMDSYDIVLVRDESLDV 1086
+YMDSYDIVL +DE+LDV
Sbjct: 263 RYMDSYDIVLEKDETLDV 280
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 22,089,140
Number of extensions: 497088
Number of successful extensions: 1709
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 1707
Number of HSP's successfully gapped: 6
Length of query: 372
Length of database: 11,343,932
Length adjustment: 100
Effective length of query: 272
Effective length of database: 8,854,232
Effective search space: 2408351104
Effective search space used: 2408351104
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003917
(1118 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr16 868 0.0
Sscrofa_Chr18 452 e-124
Sscrofa_Chr13 101 8e-19
Sscrofa_Chr15 80 3e-12
>Sscrofa_Chr16
|| Length = 86898991
Score = 868 bits (438), Expect = 0.0
Identities = 725/811 (89%), Gaps = 11/811 (1%)
Strand = Plus / Minus
Query: 309 tagaagaaattatctgtggtcttatcaaaggaggagctgccaaacttcaggtaataacag 368
|||||||||||||||||||||||| ||||||||||||||||||||||| | |||||||||
Sbjct: 23319364 tagaagaaattatctgtggtcttaacaaaggaggagctgccaaacttcggataataacag 23319305
Query: 369 actttgatatgacactgagtcgattttcctatagagggaaaagatgcccatcatgtcata 428
|||| |||||||||||||||| ||||||||| ||||||||||||||||||| ||||||||
Sbjct: 23319304 acttcgatatgacactgagtcaattttcctacagagggaaaagatgcccattatgtcata 23319245
Query: 429 atgtcattgacaactgtaagctaattacagatgagtgtcgagaaaagttactacaactaa 488
|||||||||||||||||||||||||||||||||| |||| |||||||||||| || ||||
Sbjct: 23319244 atgtcattgacaactgtaagctaattacagatgaatgtcaagaaaagttactgcagctaa 23319185
Query: 489 aggaaaagtattatgctattgaaattgatcctgttctt-actgtagaagagaagtaccct 547
||||| |||||||| |||||||||| |||||||||||| |||||| ||||| |||| |||
Sbjct: 23319184 aggaagagtattatactattgaaatggatcctgttctttactgtaaaagagcagtatcct 23319125
Query: 548 tatattgtggaatggtatactaaatcacacggtctgcttattgaacaggctttaccaaaa 607
|| || || |||||||||| ||||||||| ||| ||||| |||||||||||||||||||
Sbjct: 23319124 tacatagtagaatggtataataaatcacatggtttgcttgctgaacaggctttaccaaaa 23319065
Query: 608 gccaaacttaaagaaattgtggaagaatctgacattatgctcaaggaaggatatgagaat 667
|||||||||| ||||||| ||||||||||| || |||||||||||||||| |||||||||
Sbjct: 23319064 gccaaacttacagaaattatggaagaatctaacgttatgctcaaggaagggtatgagaat 23319005
Query: 668 ttctttgataagctccagcagtacaatatccctgtgttcatattttcggctggtatcggt 727
|| | |||||||||| || |||| ||| |||||||||||||||| ||||||| |||
Sbjct: 23319004 ttatatgataagctctgacaatacagcatctctgtgttcatattttcagctggtactggt 23318945
Query: 728 gatgtgctagaggaggttatccgtcaagctggtgtttattatccaaatgtcaaagtggtg 787
|| | |||||||||||||| ||||||||| ||||||||||||||| ||| |||| ||
Sbjct: 23318944 aatatactagaggaggttatttgtcaagctgctgtttattatccaaacgtcgaagtagta 23318885
Query: 788 tccaacttcatggattttgatgacaatgggctgctcagaggatttaaaggagaactaatt 847
|||||| ||||||||||| || ||||||||||||||| ||||||||||||||||| ||||
Sbjct: 23318884 tccaacgtcatggatttttattacaatgggctgctcaaaggatttaaaggagaaccaatt 23318825
Query: 848 catgtgtttaacaaacatgatggttccttgaagaatacggaatatttcaatcaact-aaa 906
|||||||||||||||||||||||||||||||||||||| ||||||||||||||| | |||
Sbjct: 23318824 catgtgtttaacaaacatgatggttccttgaagaatacagaatatttcaatcaattgaaa 23318765
Query: 907 aaacaatagcaacataattctgctgggagactcccaagggggactta-aaatggcagacg 965
|||||||||||||||||||||| | ||||||| ||||| ||||| |||||||| |
Sbjct: 23318764 aaacaatagcaacataattctg---gcagactcctgagggg-acttataaatggcatgtg 23318709
Query: 966 gagtagccaatgttgaacacattctgaaaattgggtatctaaacgatagagtggatgagc 1025
||||| |||||||||||||||||||||||| ||| |||||||| ||||||||||||||||
Sbjct: 23318708 gagtaaccaatgttgaacacattctgaaaactggatatctaaatgatagagtggatgagc 23318649
Query: 1026 tttta-gaaagtacatggactcttatgatattgttctagtaagagatgaatcattggacg 1084
||||| |||||||||||||||| |||||||| ||||||||| ||||||||||||||| |
Sbjct: 23318648 ttttaggaaagtacatggactc--atgatattattctagtaaaagatgaatcattggatg 23318591
Query: 1085 ttgcc-actctatcttacagaagattctata 1114
| || ||||||||||| |||||||||||||
Sbjct: 23318590 taaccaactctatcttatagaagattctata 23318560
>Sscrofa_Chr18
|| Length = 61220071
Score = 452 bits (228), Expect = e-124
Identities = 228/228 (100%)
Strand = Plus / Plus
Query: 32 tccaggcttctccgccagcctgcggctctgaggcctgcagccgtccagcgacctcttctc 91
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 44383420 tccaggcttctccgccagcctgcggctctgaggcctgcagccgtccagcgacctcttctc 44383479
Query: 92 ttgcagcgggaggcacaggaggacccgtccatggaccgagcggccgtggcgagggtgggc 151
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 44383480 ttgcagcgggaggcacaggaggacccgtccatggaccgagcggccgtggcgagggtgggc 44383539
Query: 152 gcggtagcgagcgccagcgtgtgcgccctggtggcaggggtggtgctggcccagtacata 211
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 44383540 gcggtagcgagcgccagcgtgtgcgccctggtggcaggggtggtgctggcccagtacata 44383599
Query: 212 ttcaccttgagaaggaagacgggccggaagaccaagatcatcgagatg 259
||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 44383600 ttcaccttgagaaggaagacgggccggaagaccaagatcatcgagatg 44383647
Score = 373 bits (188), Expect = e-100
Identities = 202/204 (99%), Gaps = 2/204 (0%)
Strand = Plus / Plus
Query: 815 gggctgctcagaggatttaaaggagaactaattcatgtgtttaacaaacatgatggttcc 874
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 44423666 gggctgctcagaggatttaaaggagaactaattcatgtgtttaacaaacatgatggttcc 44423725
Query: 875 ttgaagaatacggaatatttcaatcaactaaaaaacaatagcaacataattctgctggga 934
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 44423726 ttgaagaatacggaatatttcaatcaactaaaaaacaatagcaacataattctgctggga 44423785
Query: 935 gactcccaagggggactt-aaaatggcagacggagtagccaatgttgaacacattctgaa 993
||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 44423786 gactcccaa-ggggacttaaaaatggcagacggagtagccaatgttgaacacattctgaa 44423844
Query: 994 aattgggtatctaaacgatagagt 1017
||||||||||||||||||||||||
Sbjct: 44423845 aattgggtatctaaacgatagagt 44423868
Score = 317 bits (160), Expect = 7e-84
Identities = 163/164 (99%)
Strand = Plus / Plus
Query: 652 ggaaggatatgagaatttctttgataagctccagcagtacaatatccctgtgttcatatt 711
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 44422955 ggaaggatatgagaatttctttgataagctccagcagtacaatatccctgtgttcatatt 44423014
Query: 712 ttcggctggtatcggtgatgtgctagaggaggttatccgtcaagctggtgtttattatcc 771
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 44423015 ttcggctggtatcggtgatgtgctagaggaggttatccgtcaagctggtgtttattatcc 44423074
Query: 772 aaatgtcaaagtggtgtccaacttcatggattttgatgacaatg 815
||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 44423075 aaatgtcaaagtggtatccaacttcatggattttgatgacaatg 44423118
Score = 202 bits (102), Expect = 3e-49
Identities = 102/102 (100%)
Strand = Plus / Plus
Query: 259 gatgccagaattccagaaaagttcagttcgcatcaagaatcctacaaaagtagaagaaat 318
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 44415386 gatgccagaattccagaaaagttcagttcgcatcaagaatcctacaaaagtagaagaaat 44415445
Query: 319 tatctgtggtcttatcaaaggaggagctgccaaacttcaggt 360
||||||||||||||||||||||||||||||||||||||||||
Sbjct: 44415446 tatctgtggtcttatcaaaggaggagctgccaaacttcaggt 44415487
Score = 180 bits (91), Expect = 1e-42
Identities = 91/91 (100%)
Strand = Plus / Plus
Query: 474 agttactacaactaaaggaaaagtattatgctattgaaattgatcctgttcttactgtag 533
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 44419919 agttactacaactaaaggaaaagtattatgctattgaaattgatcctgttcttactgtag 44419978
Query: 534 aagagaagtacccttatattgtggaatggta 564
|||||||||||||||||||||||||||||||
Sbjct: 44419979 aagagaagtacccttatattgtggaatggta 44420009
Score = 174 bits (88), Expect = 7e-41
Identities = 91/92 (98%)
Strand = Plus / Plus
Query: 561 ggtatactaaatcacacggtctgcttattgaacaggctttaccaaaagccaaacttaaag 620
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 44421721 ggtatactaaatcacatggtctgcttattgaacaggctttaccaaaagccaaacttaaag 44421780
Query: 621 aaattgtggaagaatctgacattatgctcaag 652
||||||||||||||||||||||||||||||||
Sbjct: 44421781 aaattgtggaagaatctgacattatgctcaag 44421812
Score = 168 bits (85), Expect = 4e-39
Identities = 99/101 (98%), Gaps = 2/101 (1%)
Strand = Plus / Plus
Query: 1016 gtggatgagcttttagaaa-gtacatggactcttatgatattgttctagtaagagatgaa 1074
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 44424635 gtggatgagcttttagaaaagtacatggactcttatgatattgttctagtaagagatgaa 44424694
Query: 1075 tcattggacgttgcc-actctatcttacagaagattctata 1114
||||||||||||||| |||||||||||||||||||||||||
Sbjct: 44424695 tcattggacgttgccaactctatcttacagaagattctata 44424735
Score = 145 bits (73), Expect = 6e-32
Identities = 73/73 (100%)
Strand = Plus / Plus
Query: 356 caggtaataacagactttgatatgacactgagtcgattttcctatagagggaaaagatgc 415
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 44417513 caggtaataacagactttgatatgacactgagtcgattttcctatagagggaaaagatgc 44417572
Query: 416 ccatcatgtcata 428
|||||||||||||
Sbjct: 44417573 ccatcatgtcata 44417585
Score = 103 bits (52), Expect = 2e-19
Identities = 70/76 (92%)
Strand = Plus / Plus
Query: 160 gagcgccagcgtgtgcgccctggtggcaggggtggtgctggcccagtacatattcacctt 219
|||||||||||||||| || ||||||||||||||||||||||||||| ||| ||||||||
Sbjct: 44336695 gagcgccagcgtgtgcaccttggtggcaggggtggtgctggcccagtgcatgttcacctt 44336754
Query: 220 gagaaggaagacgggc 235
|| ||||||||||||
Sbjct: 44336755 gaagaggaagacgggc 44336770
Score = 93.7 bits (47), Expect = 2e-16
Identities = 47/47 (100%)
Strand = Plus / Plus
Query: 429 atgtcattgacaactgtaagctaattacagatgagtgtcgagaaaag 475
|||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 44418839 atgtcattgacaactgtaagctaattacagatgagtgtcgagaaaag 44418885
>Sscrofa_Chr13
|| Length = 218635234
Score = 101 bits (51), Expect = 8e-19
Identities = 194/239 (81%), Gaps = 2/239 (0%)
Strand = Plus / Minus
Query: 796 catggattttgatgacaatgggctgctcagaggatttaaaggagaactaattcatgtgtt 855
||||||||||||||| |||| | | |||| ||||||||||||| || ||| ||||| ||
Sbjct: 158870396 catggattttgatgaaaatgtgtt-ctcaaaggatttaaaggacaattaactcatgcatt 158870338
Query: 856 taacaaacatgatggttccttgaagaatacggaatatttcaatcaactaaaaaacaatag 915
| |||||||||||| | |||||||||| || |||||||| ||| |||| ||||| |
Sbjct: 158870337 tcacaaacatgatgataccttgaagaacacaaaatatttctctcagttaaaggacaattg 158870278
Query: 916 caacataattctgctgggagactcccaagggggacttaaaatggcagacggagtagccaa 975
||| ||| ||| || ||||||||||||| | |||| |||| | | |||| |||||
Sbjct: 158870277 caatttaactctactaagagactcccaaggagattttaagatggaaaatggagcagccag 158870218
Query: 976 tgttgaacacattctgaaaattgggtatctaaacgatagagtggatgagcttttagaaa 1034
|||| |||||||||||||||| || ||||| || |||||||||||||| ||||||||||
Sbjct: 158870217 tgtttaacacattctgaaaatcggatatct-aatgatagagtggatgaccttttagaaa 158870160
>Sscrofa_Chr15
|| Length = 157681621
Score = 79.8 bits (40), Expect = 3e-12
Identities = 133/159 (83%), Gaps = 5/159 (3%)
Strand = Plus / Plus
Query: 909 acaatagcaacataattctgctgggagactcccaagggggacttaa-aatggcagacgga 967
|||||||||||||||||||| |||||||||| ||||| | |||||| ||| |||||||||
Sbjct: 93263685 acaatagcaacataattctgttgggagactctcaaggag-acttaataatagcagacgga 93263743
Query: 968 gtagccaatgttgaacacattctgaaaattgggtatctaaacgatagagtggatgagctt 1027
||| ||| | | |||| ||| ||||| | |||||||| || ||| ||| ||| |||
Sbjct: 93263744 acagctaatatgggacaccttcagaaaacag--tatctaaatgacagaatgggtgaactt 93263801
Query: 1028 ttagaaa-gtacatggactcttatgatattgttctagta 1065
||||||| |||||||| |||||||||||||||| |||||
Sbjct: 93263802 ttagaaaagtacatgggctcttatgatattgttttagta 93263840
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 32,889,050
Number of extensions: 230
Number of successful extensions: 230
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 221
Number of HSP's successfully gapped: 13
Length of query: 1118
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1097
Effective length of database: 2,808,413,156
Effective search space: 3080829232132
Effective search space used: 3080829232132
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)