Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003918
(964 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001069593.1| probable dolichyl pyrophosphate Glc1Man9GlcN... 536 e-152
Alignment gi|NP_001068900.2| dolichyl pyrophosphate Man9GlcNAc2 alpha-1,3... 106 3e-23
>ref|NP_001069593.1| probable dolichyl pyrophosphate Glc1Man9GlcNAc2
alpha-1,3-glucosyltransferase [Bos taurus].
Length = 526
Score = 536 bits (1380), Expect = e-152
Identities = 259/273 (94%), Positives = 263/273 (96%)
Frame = +2
Query: 38 MAALRSATGGGNWFSALALGVTLLKCLLIPTYHSTDFEVHRNWLAITHSLPISQWYYEAT 217
MAA ATGG NWFSALALGVTLLKCLLIPTYHSTDFEVHRNWLAITHSLPISQWYYEAT
Sbjct: 1 MAAFGIATGGSNWFSALALGVTLLKCLLIPTYHSTDFEVHRNWLAITHSLPISQWYYEAT 60
Query: 218 SEWTLDYPPFFAWFEFALSHVAKYFDQEMLNVRNLNYSSSRTVLFQRFSVIFTDVLFVYA 397
SEWTLDYPPFFAWFE+ALSHVAKYFDQEMLNVRNLNYSSSRT+LFQRFSVIFTD LFVYA
Sbjct: 61 SEWTLDYPPFFAWFEYALSHVAKYFDQEMLNVRNLNYSSSRTLLFQRFSVIFTDALFVYA 120
Query: 398 VHECCKCIDGKKAGKELTEKPKFILSVLLLWNFGLLIVDHIHFQYNGFLFGLMLLSIARL 577
VHECCKCIDGKKAGKELTEKPKFILS LLLWNFGLLIVDHIHFQYNGFL GLMLLSIAR
Sbjct: 121 VHECCKCIDGKKAGKELTEKPKFILSALLLWNFGLLIVDHIHFQYNGFLSGLMLLSIARF 180
Query: 578 FQKRHMEGAFLFAVLLHFKHIYLYVAPAYGIYLLRSYCFTANKPDGSIRWNSFSFVRLIS 757
FQKRHMEGAFLFAVLLHFKHIYLYVAPAYG+YLLRSYCFTANK DGSIRWNSFSFVRLIS
Sbjct: 181 FQKRHMEGAFLFAVLLHFKHIYLYVAPAYGVYLLRSYCFTANKQDGSIRWNSFSFVRLIS 240
Query: 758 LGLIVFLVSALSLGPFLALNQLPPVFSRLFPFR 856
LGLIVFLVSALSLGPFLALNQLP VFSRLFPF+
Sbjct: 241 LGLIVFLVSALSLGPFLALNQLPQVFSRLFPFK 273
>ref|NP_001068900.2| dolichyl pyrophosphate Man9GlcNAc2 alpha-1,3-glucosyltransferase
[Bos taurus].
Length = 507
Score = 106 bits (264), Expect = 3e-23
Identities = 79/271 (29%), Positives = 128/271 (47%), Gaps = 14/271 (5%)
Frame = +2
Query: 80 SALALGVTLLKCLLIPTYHST-------DFEVHRNWLAITHSLPISQWYYEATSE----W 226
+A+ LG+T+ + + +Y D+E R+W IT +LPI QWY+ ++ W
Sbjct: 9 AAVLLGLTVRWTVSLNSYSGAGKPPMFGDYEAQRHWQEITFNLPIKQWYFNSSDNNLQYW 68
Query: 227 TLDYPPFFAWFEFALSHVAKYFDQEMLNVRNLN-YSSSRTVLFQRFSVIFTDVL-FVYAV 400
LDYPP A+ F ++VAK+ + + + + + Y S LF R +V+ D+L ++ AV
Sbjct: 69 GLDYPPLTAYHSFLCAYVAKFINPDWIALHSSRGYESQAHKLFMRATVLIADLLIYIPAV 128
Query: 401 HECCKCIDGKKAGKELTEKPKFILSVLLLWNFGLLIVDHIHFQYNGFLFGLMLLSIARLF 580
C C+ KE++ K K ++ +L GL+++D+ HFQYN G L I +
Sbjct: 129 VLYCCCL------KEISTKKKIATALCILLYPGLILIDYGHFQYNSVSLGFALWGILGVS 182
Query: 581 QKRHMEGAFLFAVLLHFKHIYLYVAPAYGIYLLRSYCFTANKPDGSIRWNSFSFVRLISL 760
+ G+ F + +++K + LY + + +LL CF + V LI L
Sbjct: 183 YDWDLLGSLAFCLAINYKQMELYHSLPFFCFLL-GKCFKKGLKGKGL-------VLLIKL 234
Query: 761 GLIVFLVSALSLGPFLA-LNQLPPVFSRLFP 850
V L PF Q V RLFP
Sbjct: 235 ACTVVASFILCWLPFFTEREQTLQVLRRLFP 265
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 36,743,411
Number of extensions: 931211
Number of successful extensions: 2694
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 2688
Number of HSP's successfully gapped: 2
Length of query: 321
Length of database: 17,681,374
Length adjustment: 102
Effective length of query: 219
Effective length of database: 14,306,398
Effective search space: 3133101162
Effective search space used: 3133101162
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003918
(964 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_533998.2| PREDICTED: similar to alpha-1,3-glucosyltransfe... 534 e-152
Alignment gi|XP_858820.1| PREDICTED: similar to Probable dolichyl pyropho... 534 e-152
Alignment gi|XP_858932.1| PREDICTED: similar to alpha-1,3-glucosyltransfe... 500 e-142
Alignment gi|XP_859013.1| PREDICTED: similar to alpha-1,3-glucosyltransfe... 426 e-119
Alignment gi|XP_859047.1| PREDICTED: similar to Probable dolichyl pyropho... 361 e-100
Alignment gi|XP_858975.1| PREDICTED: similar to alpha-1,3-glucosyltransfe... 301 8e-82
Alignment gi|XP_852431.1| PREDICTED: similar to Dolichyl pyrophosphate Ma... 97 2e-20
>ref|XP_533998.2| PREDICTED: similar to alpha-1,3-glucosyltransferase ALG8 isoform a
isoform 1 [Canis familiaris].
Length = 526
Score = 534 bits (1375), Expect = e-152
Identities = 258/273 (94%), Positives = 263/273 (96%)
Frame = +2
Query: 38 MAALRSATGGGNWFSALALGVTLLKCLLIPTYHSTDFEVHRNWLAITHSLPISQWYYEAT 217
MAA A GGNWFSALALGVTLLKCLLIPTYHSTDFEVHRNWLAITHSLPISQWYYEAT
Sbjct: 1 MAAPGVAACGGNWFSALALGVTLLKCLLIPTYHSTDFEVHRNWLAITHSLPISQWYYEAT 60
Query: 218 SEWTLDYPPFFAWFEFALSHVAKYFDQEMLNVRNLNYSSSRTVLFQRFSVIFTDVLFVYA 397
SEWTLDYPPFFAWFE+ALSHVAKYFDQEMLN+ NLNYSSSRT+LFQRFSVIFTD LFVYA
Sbjct: 61 SEWTLDYPPFFAWFEYALSHVAKYFDQEMLNIHNLNYSSSRTLLFQRFSVIFTDALFVYA 120
Query: 398 VHECCKCIDGKKAGKELTEKPKFILSVLLLWNFGLLIVDHIHFQYNGFLFGLMLLSIARL 577
VHECCKCIDGKKAGKELTEKPKFILSVLLLWNFGLLIVDHIHFQYNGFLFGLMLLSIARL
Sbjct: 121 VHECCKCIDGKKAGKELTEKPKFILSVLLLWNFGLLIVDHIHFQYNGFLFGLMLLSIARL 180
Query: 578 FQKRHMEGAFLFAVLLHFKHIYLYVAPAYGIYLLRSYCFTANKPDGSIRWNSFSFVRLIS 757
FQKRHMEGA LFAVLLHFKHIYLYVAPAYGIYLLRSYCFTANKPDGSIRWNSFSF+RLIS
Sbjct: 181 FQKRHMEGALLFAVLLHFKHIYLYVAPAYGIYLLRSYCFTANKPDGSIRWNSFSFIRLIS 240
Query: 758 LGLIVFLVSALSLGPFLALNQLPPVFSRLFPFR 856
LGLIVFLVSALSLGPFLALNQLP V SRLFPF+
Sbjct: 241 LGLIVFLVSALSLGPFLALNQLPQVLSRLFPFK 273
>ref|XP_858820.1| PREDICTED: similar to Probable dolichyl pyrophosphate
Glc1Man9GlcNAc2 alpha-1,3-glucosyltransferase
(Dolichyl-P-Glc:Glc1Man9GlcNAc2-PP-dolichyl
glucosyltransferase) (HUSSY-02) isoform 2 [Canis
familiaris].
Length = 352
Score = 534 bits (1375), Expect = e-152
Identities = 258/273 (94%), Positives = 263/273 (96%)
Frame = +2
Query: 38 MAALRSATGGGNWFSALALGVTLLKCLLIPTYHSTDFEVHRNWLAITHSLPISQWYYEAT 217
MAA A GGNWFSALALGVTLLKCLLIPTYHSTDFEVHRNWLAITHSLPISQWYYEAT
Sbjct: 1 MAAPGVAACGGNWFSALALGVTLLKCLLIPTYHSTDFEVHRNWLAITHSLPISQWYYEAT 60
Query: 218 SEWTLDYPPFFAWFEFALSHVAKYFDQEMLNVRNLNYSSSRTVLFQRFSVIFTDVLFVYA 397
SEWTLDYPPFFAWFE+ALSHVAKYFDQEMLN+ NLNYSSSRT+LFQRFSVIFTD LFVYA
Sbjct: 61 SEWTLDYPPFFAWFEYALSHVAKYFDQEMLNIHNLNYSSSRTLLFQRFSVIFTDALFVYA 120
Query: 398 VHECCKCIDGKKAGKELTEKPKFILSVLLLWNFGLLIVDHIHFQYNGFLFGLMLLSIARL 577
VHECCKCIDGKKAGKELTEKPKFILSVLLLWNFGLLIVDHIHFQYNGFLFGLMLLSIARL
Sbjct: 121 VHECCKCIDGKKAGKELTEKPKFILSVLLLWNFGLLIVDHIHFQYNGFLFGLMLLSIARL 180
Query: 578 FQKRHMEGAFLFAVLLHFKHIYLYVAPAYGIYLLRSYCFTANKPDGSIRWNSFSFVRLIS 757
FQKRHMEGA LFAVLLHFKHIYLYVAPAYGIYLLRSYCFTANKPDGSIRWNSFSF+RLIS
Sbjct: 181 FQKRHMEGALLFAVLLHFKHIYLYVAPAYGIYLLRSYCFTANKPDGSIRWNSFSFIRLIS 240
Query: 758 LGLIVFLVSALSLGPFLALNQLPPVFSRLFPFR 856
LGLIVFLVSALSLGPFLALNQLP V SRLFPF+
Sbjct: 241 LGLIVFLVSALSLGPFLALNQLPQVLSRLFPFK 273
>ref|XP_858932.1| PREDICTED: similar to alpha-1,3-glucosyltransferase ALG8 isoform a
isoform 4 [Canis familiaris].
Length = 520
Score = 500 bits (1288), Expect = e-142
Identities = 249/273 (91%), Positives = 254/273 (93%)
Frame = +2
Query: 38 MAALRSATGGGNWFSALALGVTLLKCLLIPTYHSTDFEVHRNWLAITHSLPISQWYYEAT 217
MAA A GGNWFSALALGVTLLKCLLIPTYHSTDFEVHRNWLAITHSLPISQWYYEAT
Sbjct: 1 MAAPGVAACGGNWFSALALGVTLLKCLLIPTYHSTDFEVHRNWLAITHSLPISQWYYEAT 60
Query: 218 SEWTLDYPPFFAWFEFALSHVAKYFDQEMLNVRNLNYSSSRTVLFQRFSVIFTDVLFVYA 397
SEWTLDYPPFFAWFE+ALSHVAKYFDQEMLN+ NLNYSSSRT+LFQRFSVIFTD LFVYA
Sbjct: 61 SEWTLDYPPFFAWFEYALSHVAKYFDQEMLNIHNLNYSSSRTLLFQRFSVIFTDALFVYA 120
Query: 398 VHECCKCIDGKKAGKELTEKPKFILSVLLLWNFGLLIVDHIHFQYNGFLFGLMLLSIARL 577
VHECCKCIDGKKAGKELTEKPKFILSVLLLWNFGLLIVDHIHFQYNGFLFGLMLLSIARL
Sbjct: 121 VHECCKCIDGKKAGKELTEKPKFILSVLLLWNFGLLIVDHIHFQYNGFLFGLMLLSIARL 180
Query: 578 FQKRHMEGAFLFAVLLHFKHIYLYVAPAYGIYLLRSYCFTANKPDGSIRWNSFSFVRLIS 757
FQKRHMEGA LFAVLLHFKHIYLYVAPAYGIYLLRSYCFTANKP G FSF+RLIS
Sbjct: 181 FQKRHMEGALLFAVLLHFKHIYLYVAPAYGIYLLRSYCFTANKP-GKFH---FSFIRLIS 236
Query: 758 LGLIVFLVSALSLGPFLALNQLPPVFSRLFPFR 856
LGLIVFLVSALSLGPF LNQLP V SRLFPF+
Sbjct: 237 LGLIVFLVSALSLGPF--LNQLPQVLSRLFPFK 267
>ref|XP_859013.1| PREDICTED: similar to alpha-1,3-glucosyltransferase ALG8 isoform a
isoform 6 [Canis familiaris].
Length = 475
Score = 426 bits (1094), Expect = e-119
Identities = 205/215 (95%), Positives = 210/215 (97%)
Frame = +2
Query: 212 ATSEWTLDYPPFFAWFEFALSHVAKYFDQEMLNVRNLNYSSSRTVLFQRFSVIFTDVLFV 391
ATSEWTLDYPPFFAWFE+ALSHVAKYFDQEMLN+ NLNYSSSRT+LFQRFSVIFTD LFV
Sbjct: 8 ATSEWTLDYPPFFAWFEYALSHVAKYFDQEMLNIHNLNYSSSRTLLFQRFSVIFTDALFV 67
Query: 392 YAVHECCKCIDGKKAGKELTEKPKFILSVLLLWNFGLLIVDHIHFQYNGFLFGLMLLSIA 571
YAVHECCKCIDGKKAGKELTEKPKFILSVLLLWNFGLLIVDHIHFQYNGFLFGLMLLSIA
Sbjct: 68 YAVHECCKCIDGKKAGKELTEKPKFILSVLLLWNFGLLIVDHIHFQYNGFLFGLMLLSIA 127
Query: 572 RLFQKRHMEGAFLFAVLLHFKHIYLYVAPAYGIYLLRSYCFTANKPDGSIRWNSFSFVRL 751
RLFQKRHMEGA LFAVLLHFKHIYLYVAPAYGIYLLRSYCFTANKPDGSIRWNSFSF+RL
Sbjct: 128 RLFQKRHMEGALLFAVLLHFKHIYLYVAPAYGIYLLRSYCFTANKPDGSIRWNSFSFIRL 187
Query: 752 ISLGLIVFLVSALSLGPFLALNQLPPVFSRLFPFR 856
ISLGLIVFLVSALSLGPFLALNQLP V SRLFPF+
Sbjct: 188 ISLGLIVFLVSALSLGPFLALNQLPQVLSRLFPFK 222
>ref|XP_859047.1| PREDICTED: similar to Probable dolichyl pyrophosphate
Glc1Man9GlcNAc2 alpha-1,3-glucosyltransferase
(Dolichyl-P-Glc:Glc1Man9GlcNAc2-PP-dolichyl
glucosyltransferase) (HUSSY-02) isoform 7 [Canis
familiaris].
Length = 438
Score = 361 bits (926), Expect = e-100
Identities = 176/185 (95%), Positives = 180/185 (97%)
Frame = +2
Query: 302 MLNVRNLNYSSSRTVLFQRFSVIFTDVLFVYAVHECCKCIDGKKAGKELTEKPKFILSVL 481
MLN+ NLNYSSSRT+LFQRFSVIFTD LFVYAVHECCKCIDGKKAGKELTEKPKFILSVL
Sbjct: 1 MLNIHNLNYSSSRTLLFQRFSVIFTDALFVYAVHECCKCIDGKKAGKELTEKPKFILSVL 60
Query: 482 LLWNFGLLIVDHIHFQYNGFLFGLMLLSIARLFQKRHMEGAFLFAVLLHFKHIYLYVAPA 661
LLWNFGLLIVDHIHFQYNGFLFGLMLLSIARLFQKRHMEGA LFAVLLHFKHIYLYVAPA
Sbjct: 61 LLWNFGLLIVDHIHFQYNGFLFGLMLLSIARLFQKRHMEGALLFAVLLHFKHIYLYVAPA 120
Query: 662 YGIYLLRSYCFTANKPDGSIRWNSFSFVRLISLGLIVFLVSALSLGPFLALNQLPPVFSR 841
YGIYLLRSYCFTANKPDGSIRWNSFSF+RLISLGLIVFLVSALSLGPFLALNQLP V SR
Sbjct: 121 YGIYLLRSYCFTANKPDGSIRWNSFSFIRLISLGLIVFLVSALSLGPFLALNQLPQVLSR 180
Query: 842 LFPFR 856
LFPF+
Sbjct: 181 LFPFK 185
>ref|XP_858975.1| PREDICTED: similar to alpha-1,3-glucosyltransferase ALG8 isoform c
isoform 5 [Canis familiaris].
Length = 422
Score = 301 bits (770), Expect = 8e-82
Identities = 145/155 (93%), Positives = 150/155 (96%)
Frame = +2
Query: 392 YAVHECCKCIDGKKAGKELTEKPKFILSVLLLWNFGLLIVDHIHFQYNGFLFGLMLLSIA 571
+ ++ CCKCIDGKKAGKELTEKPKFILSVLLLWNFGLLIVDHIHFQYNGFLFGLMLLSIA
Sbjct: 15 FLLYRCCKCIDGKKAGKELTEKPKFILSVLLLWNFGLLIVDHIHFQYNGFLFGLMLLSIA 74
Query: 572 RLFQKRHMEGAFLFAVLLHFKHIYLYVAPAYGIYLLRSYCFTANKPDGSIRWNSFSFVRL 751
RLFQKRHMEGA LFAVLLHFKHIYLYVAPAYGIYLLRSYCFTANKPDGSIRWNSFSF+RL
Sbjct: 75 RLFQKRHMEGALLFAVLLHFKHIYLYVAPAYGIYLLRSYCFTANKPDGSIRWNSFSFIRL 134
Query: 752 ISLGLIVFLVSALSLGPFLALNQLPPVFSRLFPFR 856
ISLGLIVFLVSALSLGPFLALNQLP V SRLFPF+
Sbjct: 135 ISLGLIVFLVSALSLGPFLALNQLPQVLSRLFPFK 169
>ref|XP_852431.1| PREDICTED: similar to Dolichyl pyrophosphate Man9GlcNAc2
alpha-1,3-glucosyltransferase
(Dolichyl-P-Glc:Man9GlcNAc2-PP-dolichyl
glucosyltransferase) [Canis familiaris].
Length = 509
Score = 97.1 bits (240), Expect = 2e-20
Identities = 72/245 (29%), Positives = 114/245 (46%), Gaps = 9/245 (3%)
Frame = +2
Query: 143 DFEVHRNWLAITHSLPISQWYYEATSE----WTLDYPPFFAWFEFALSHVAKYFDQEMLN 310
D+E R+W IT +LP+ QWY+ ++ W LDYPP A+ ++VAK+ + + +
Sbjct: 37 DYEAQRHWQEITFNLPVKQWYFNSSDNNLQYWGLDYPPLTAYHSLLCAYVAKFINPDWIE 96
Query: 311 VR-NLNYSSSRTVLFQRFSVIFTDVL-FVYAVHECCKCIDGKKAGKELTEKPKFILSVLL 484
+ + Y S LF R +V D+L ++ AV C C+ KE++ K K ++ +
Sbjct: 97 LHSSRGYESQAHKLFMRTTVFIADLLIYIPAVVLYCCCL------KEISTKKKIANALCI 150
Query: 485 LWNFGLLIVDHIHFQ--YNGFLFGLMLLSIARLFQKRHMEGAFLFAVLLHFKHIYLYVAP 658
L GL+++D+ HFQ YN G L + + + G+ F + +++K + LY +
Sbjct: 151 LLYPGLILIDYGHFQNIYNSVSLGFALWGVLGVSCDWDLLGSLAFCLAINYKQMELYHSL 210
Query: 659 AYGIYLLRSYCFTANKPDGSIRWNSFSFVRLISLGLIVFLVSALSLGPFLA-LNQLPPVF 835
+ +LL CF FV LI L V L PF Q V
Sbjct: 211 PFFCFLL-GKCFKKG-------LKGKGFVLLIKLACTVVASFILCWLPFFTEREQTLQVL 262
Query: 836 SRLFP 850
RLFP
Sbjct: 263 RRLFP 267
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 38,285,184
Number of extensions: 957903
Number of successful extensions: 2877
Number of sequences better than 1.0e-05: 7
Number of HSP's gapped: 2873
Number of HSP's successfully gapped: 7
Length of query: 321
Length of database: 18,874,504
Length adjustment: 103
Effective length of query: 218
Effective length of database: 15,440,896
Effective search space: 3366115328
Effective search space used: 3366115328
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003918
(964 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001007028.1| probable dolichyl pyrophosphate Glc1Man9GlcN... 533 e-152
Alignment gi|NP_076984.2| probable dolichyl pyrophosphate Glc1Man9GlcNAc2... 533 e-152
Alignment gi|NP_037471.2| dolichyl pyrophosphate Man9GlcNAc2 alpha-1,3-gl... 105 6e-23
>ref|NP_001007028.1| probable dolichyl pyrophosphate Glc1Man9GlcNAc2
alpha-1,3-glucosyltransferase isoform b [Homo sapiens].
Length = 467
Score = 533 bits (1373), Expect = e-152
Identities = 257/273 (94%), Positives = 263/273 (96%)
Frame = +2
Query: 38 MAALRSATGGGNWFSALALGVTLLKCLLIPTYHSTDFEVHRNWLAITHSLPISQWYYEAT 217
MAAL ATG GNWFSALALGVTLLKCLLIPTYHSTDFEVHRNWLAITHSLPISQWYYEAT
Sbjct: 1 MAALTIATGTGNWFSALALGVTLLKCLLIPTYHSTDFEVHRNWLAITHSLPISQWYYEAT 60
Query: 218 SEWTLDYPPFFAWFEFALSHVAKYFDQEMLNVRNLNYSSSRTVLFQRFSVIFTDVLFVYA 397
SEWTLDYPPFFAWFE+ LSHVAKYFDQEMLNV NLNYSSSRT+LFQRFSVIF DVLFVYA
Sbjct: 61 SEWTLDYPPFFAWFEYILSHVAKYFDQEMLNVHNLNYSSSRTLLFQRFSVIFMDVLFVYA 120
Query: 398 VHECCKCIDGKKAGKELTEKPKFILSVLLLWNFGLLIVDHIHFQYNGFLFGLMLLSIARL 577
V ECCKCIDGKK GKELTEKPKFILSVLLLWNFGLLIVDHIHFQYNGFLFGLMLLSIARL
Sbjct: 121 VRECCKCIDGKKVGKELTEKPKFILSVLLLWNFGLLIVDHIHFQYNGFLFGLMLLSIARL 180
Query: 578 FQKRHMEGAFLFAVLLHFKHIYLYVAPAYGIYLLRSYCFTANKPDGSIRWNSFSFVRLIS 757
FQKRHMEGAFLFAVLLHFKHIYLYVAPAYG+YLLRSYCFTANKPDGSIRW SFSFVR+IS
Sbjct: 181 FQKRHMEGAFLFAVLLHFKHIYLYVAPAYGVYLLRSYCFTANKPDGSIRWKSFSFVRVIS 240
Query: 758 LGLIVFLVSALSLGPFLALNQLPPVFSRLFPFR 856
LGL+VFLVSALSLGPFLALNQLP VFSRLFPF+
Sbjct: 241 LGLVVFLVSALSLGPFLALNQLPQVFSRLFPFK 273
>ref|NP_076984.2| probable dolichyl pyrophosphate Glc1Man9GlcNAc2
alpha-1,3-glucosyltransferase isoform a [Homo sapiens].
Length = 526
Score = 533 bits (1373), Expect = e-152
Identities = 257/273 (94%), Positives = 263/273 (96%)
Frame = +2
Query: 38 MAALRSATGGGNWFSALALGVTLLKCLLIPTYHSTDFEVHRNWLAITHSLPISQWYYEAT 217
MAAL ATG GNWFSALALGVTLLKCLLIPTYHSTDFEVHRNWLAITHSLPISQWYYEAT
Sbjct: 1 MAALTIATGTGNWFSALALGVTLLKCLLIPTYHSTDFEVHRNWLAITHSLPISQWYYEAT 60
Query: 218 SEWTLDYPPFFAWFEFALSHVAKYFDQEMLNVRNLNYSSSRTVLFQRFSVIFTDVLFVYA 397
SEWTLDYPPFFAWFE+ LSHVAKYFDQEMLNV NLNYSSSRT+LFQRFSVIF DVLFVYA
Sbjct: 61 SEWTLDYPPFFAWFEYILSHVAKYFDQEMLNVHNLNYSSSRTLLFQRFSVIFMDVLFVYA 120
Query: 398 VHECCKCIDGKKAGKELTEKPKFILSVLLLWNFGLLIVDHIHFQYNGFLFGLMLLSIARL 577
V ECCKCIDGKK GKELTEKPKFILSVLLLWNFGLLIVDHIHFQYNGFLFGLMLLSIARL
Sbjct: 121 VRECCKCIDGKKVGKELTEKPKFILSVLLLWNFGLLIVDHIHFQYNGFLFGLMLLSIARL 180
Query: 578 FQKRHMEGAFLFAVLLHFKHIYLYVAPAYGIYLLRSYCFTANKPDGSIRWNSFSFVRLIS 757
FQKRHMEGAFLFAVLLHFKHIYLYVAPAYG+YLLRSYCFTANKPDGSIRW SFSFVR+IS
Sbjct: 181 FQKRHMEGAFLFAVLLHFKHIYLYVAPAYGVYLLRSYCFTANKPDGSIRWKSFSFVRVIS 240
Query: 758 LGLIVFLVSALSLGPFLALNQLPPVFSRLFPFR 856
LGL+VFLVSALSLGPFLALNQLP VFSRLFPF+
Sbjct: 241 LGLVVFLVSALSLGPFLALNQLPQVFSRLFPFK 273
>ref|NP_037471.2| dolichyl pyrophosphate Man9GlcNAc2 alpha-1,3-glucosyltransferase
[Homo sapiens].
Length = 507
Score = 105 bits (262), Expect = 6e-23
Identities = 73/243 (30%), Positives = 116/243 (47%), Gaps = 7/243 (2%)
Frame = +2
Query: 143 DFEVHRNWLAITHSLPISQWYYEATSE----WTLDYPPFFAWFEFALSHVAKYFDQEMLN 310
D+E R+W IT +LP+ QWY+ ++ W LDYPP A+ ++VAK+ + + +
Sbjct: 37 DYEAQRHWQEITFNLPVKQWYFNSSDNNLQYWGLDYPPLTAYHSLLCAYVAKFINPDWIA 96
Query: 311 VR-NLNYSSSRTVLFQRFSVIFTDVL-FVYAVHECCKCIDGKKAGKELTEKPKFILSVLL 484
+ + Y S LF R +V+ D+L ++ AV C C+ KE++ K K ++ +
Sbjct: 97 LHTSRGYESQAHKLFMRTTVLIADLLIYIPAVVLYCCCL------KEISTKKKIANALCI 150
Query: 485 LWNFGLLIVDHIHFQYNGFLFGLMLLSIARLFQKRHMEGAFLFAVLLHFKHIYLYVAPAY 664
L GL+++D+ HFQYN G L + + + G+ F + +++K + LY A +
Sbjct: 151 LLYPGLILIDYGHFQYNSVSLGFALWGVLGISCDCDLLGSLAFCLAINYKQMELYHALPF 210
Query: 665 GIYLLRSYCFTANKPDGSIRWNSFSFVRLISLGLIVFLVSALSLGPFLA-LNQLPPVFSR 841
+LL CF FV L+ L IV L PF Q V R
Sbjct: 211 FCFLL-GKCFKKG-------LKGKGFVLLVKLACIVVASFVLCWLPFFTEREQTLQVLRR 262
Query: 842 LFP 850
LFP
Sbjct: 263 LFP 265
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 37,764,463
Number of extensions: 955640
Number of successful extensions: 2646
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 2625
Number of HSP's successfully gapped: 3
Length of query: 321
Length of database: 18,297,164
Length adjustment: 103
Effective length of query: 218
Effective length of database: 14,901,872
Effective search space: 3248608096
Effective search space used: 3248608096
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003918
(964 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_950200.2| probable dolichyl pyrophosphate Glc1Man9GlcNAc2... 513 e-146
Alignment gi|NP_001074733.1| dolichyl pyrophosphate Man9GlcNAc2 alpha-1,3... 97 2e-20
>ref|NP_950200.2| probable dolichyl pyrophosphate Glc1Man9GlcNAc2
alpha-1,3-glucosyltransferase [Mus musculus].
Length = 526
Score = 513 bits (1321), Expect = e-146
Identities = 244/273 (89%), Positives = 259/273 (94%)
Frame = +2
Query: 38 MAALRSATGGGNWFSALALGVTLLKCLLIPTYHSTDFEVHRNWLAITHSLPISQWYYEAT 217
MAA SAT GG+WFSALALGVTLLKCLLIPTYHSTDFEVHRNWLAITHSLPISQWYYEAT
Sbjct: 1 MAASGSATAGGHWFSALALGVTLLKCLLIPTYHSTDFEVHRNWLAITHSLPISQWYYEAT 60
Query: 218 SEWTLDYPPFFAWFEFALSHVAKYFDQEMLNVRNLNYSSSRTVLFQRFSVIFTDVLFVYA 397
SEWTLDYPPFFAWFE+ALSH+AKYFDQEMLN+ NLNY SSRT+LFQRFSVI TD LFVYA
Sbjct: 61 SEWTLDYPPFFAWFEYALSHIAKYFDQEMLNIHNLNYYSSRTLLFQRFSVILTDALFVYA 120
Query: 398 VHECCKCIDGKKAGKELTEKPKFILSVLLLWNFGLLIVDHIHFQYNGFLFGLMLLSIARL 577
VHECCKCIDGK+ GK+LTEKPKFILSVLLLWNFGLLIVDHIHFQYNGFL GL+LLSIARL
Sbjct: 121 VHECCKCIDGKRTGKDLTEKPKFILSVLLLWNFGLLIVDHIHFQYNGFLSGLLLLSIARL 180
Query: 578 FQKRHMEGAFLFAVLLHFKHIYLYVAPAYGIYLLRSYCFTANKPDGSIRWNSFSFVRLIS 757
FQKRH+EGA LFAVLLH KHIYLYVAPAYG+YLLRSYCFTA+KPDGS+RW+SFS VR+ S
Sbjct: 181 FQKRHIEGALLFAVLLHLKHIYLYVAPAYGVYLLRSYCFTASKPDGSVRWSSFSVVRVTS 240
Query: 758 LGLIVFLVSALSLGPFLALNQLPPVFSRLFPFR 856
LGLIVFLVSALSLGPFLALNQLP VFSRLFPF+
Sbjct: 241 LGLIVFLVSALSLGPFLALNQLPQVFSRLFPFK 273
>ref|NP_001074733.1| dolichyl pyrophosphate Man9GlcNAc2 alpha-1,3-glucosyltransferase
[Mus musculus].
Length = 507
Score = 97.1 bits (240), Expect = 2e-20
Identities = 77/274 (28%), Positives = 130/274 (47%), Gaps = 15/274 (5%)
Frame = +2
Query: 74 WFSALAL-GVTLLKCLLIPTYHST-------DFEVHRNWLAITHSLPISQWYYEATSE-- 223
W + + L G+T+ + + +Y D+E R+W IT +LP+ QWY+ ++
Sbjct: 6 WMAVVVLLGLTVRWTVSLSSYSGAGKPPMFGDYEAQRHWQEITLNLPVKQWYFNSSDNNL 65
Query: 224 --WTLDYPPFFAWFEFALSHVAKYFDQEMLNVR-NLNYSSSRTVLFQRFSVIFTDVL-FV 391
W LDYPP A+ ++VAK+ + + + + + Y S LF R +V+ D+L +V
Sbjct: 66 LYWGLDYPPLTAYHSLLCAYVAKFINPDWVALHTSRGYESQAHKLFMRATVLAADLLIYV 125
Query: 392 YAVHECCKCIDGKKAGKELTEKPKFILSVLLLWNFGLLIVDHIHFQYNGFLFGLMLLSIA 571
AV C + KE++ K K ++ +L GL+++D+ HFQYN G L +
Sbjct: 126 PAVLLYCYSL------KEISPKRKIASALCILLYPGLILIDYGHFQYNSVSLGFALWGVL 179
Query: 572 RLFQKRHMEGAFLFAVLLHFKHIYLYVAPAYGIYLLRSYCFTANKPDGSIRWNSFSFVRL 751
+ + G+ F + L++K + LY + + +LL CF + F+R+
Sbjct: 180 GVSWDWDLLGSLAFCLALNYKQMELYHSLPFFCFLL-GKCFKKGLKGKGLA----LFIRI 234
Query: 752 ISLGLIVFLVSALSLGPFLALNQ-LPPVFSRLFP 850
L FL+ L PFL + V RLFP
Sbjct: 235 ACTVLASFLLCWL---PFLTEREHALQVVRRLFP 265
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 32,337,119
Number of extensions: 817640
Number of successful extensions: 2351
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 2348
Number of HSP's successfully gapped: 2
Length of query: 321
Length of database: 15,617,559
Length adjustment: 101
Effective length of query: 220
Effective length of database: 12,583,923
Effective search space: 2768463060
Effective search space used: 2768463060
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003918
(964 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_003129736.2| PREDICTED: probable dolichyl pyrophosphate G... 558 e-159
Alignment gi|XP_003129747.2| PREDICTED: probable dolichyl pyrophosphate G... 382 e-106
Alignment gi|XP_003127995.2| PREDICTED: dolichyl pyrophosphate Man9GlcNAc... 103 1e-22
>ref|XP_003129736.2| PREDICTED: probable dolichyl pyrophosphate Glc1Man9GlcNAc2
alpha-1,3-glucosyltransferase [Sus scrofa].
Length = 393
Score = 558 bits (1438), Expect = e-159
Identities = 271/273 (99%), Positives = 272/273 (99%)
Frame = +2
Query: 38 MAALRSATGGGNWFSALALGVTLLKCLLIPTYHSTDFEVHRNWLAITHSLPISQWYYEAT 217
MAALRSATGGGNWFSALALGVTLLKCLLIPTYHSTDFEVHRNWLAITHSLPISQWYYEAT
Sbjct: 1 MAALRSATGGGNWFSALALGVTLLKCLLIPTYHSTDFEVHRNWLAITHSLPISQWYYEAT 60
Query: 218 SEWTLDYPPFFAWFEFALSHVAKYFDQEMLNVRNLNYSSSRTVLFQRFSVIFTDVLFVYA 397
SEWTLDYPPFFAWFEFALSHVAKYFDQEMLNVRNLNYSSSRTVLFQRFSVIFTDVLFVYA
Sbjct: 61 SEWTLDYPPFFAWFEFALSHVAKYFDQEMLNVRNLNYSSSRTVLFQRFSVIFTDVLFVYA 120
Query: 398 VHECCKCIDGKKAGKELTEKPKFILSVLLLWNFGLLIVDHIHFQYNGFLFGLMLLSIARL 577
VHECCKCIDGKKAGKELTEKPKFILSVLLLWNFGLLIVDHIHFQYNGFLFGLMLLSIARL
Sbjct: 121 VHECCKCIDGKKAGKELTEKPKFILSVLLLWNFGLLIVDHIHFQYNGFLFGLMLLSIARL 180
Query: 578 FQKRHMEGAFLFAVLLHFKHIYLYVAPAYGIYLLRSYCFTANKPDGSIRWNSFSFVRLIS 757
FQKRHMEGAFLFAVLLHFKHIYLYVAPAYGIYLLRSYCFTANKPDGSIRWNSFSFVRLIS
Sbjct: 181 FQKRHMEGAFLFAVLLHFKHIYLYVAPAYGIYLLRSYCFTANKPDGSIRWNSFSFVRLIS 240
Query: 758 LGLIVFLVSALSLGPFLALNQLPPVFSRLFPFR 856
LGLIVFLVSALSLGPFLALNQLP VFSRLFPF+
Sbjct: 241 LGLIVFLVSALSLGPFLALNQLPQVFSRLFPFK 273
>ref|XP_003129747.2| PREDICTED: probable dolichyl pyrophosphate Glc1Man9GlcNAc2
alpha-1,3-glucosyltransferase-like [Sus scrofa].
Length = 449
Score = 382 bits (980), Expect = e-106
Identities = 189/211 (89%), Positives = 195/211 (92%), Gaps = 2/211 (0%)
Frame = +2
Query: 38 MAALRSATGGGNWFSALALGVTLLKCLLIPTYHSTDFEVHRNWLAITHSLPISQWYYEAT 217
MAALRSATGGGNWFSALALGVTLLKCLLIPTYHSTDFEVHRNWLAITHSLPISQWYYEAT
Sbjct: 1 MAALRSATGGGNWFSALALGVTLLKCLLIPTYHSTDFEVHRNWLAITHSLPISQWYYEAT 60
Query: 218 SEWTLDYPPFFAWFEFALSHVAKYFDQEMLNVRNLNYSSSRTVLFQRFSVIFTDVLFVYA 397
SEWTLDYPPFFAWFEFALSHVAKYFDQEMLNVRNLNYSSSRTVLFQRFSVIFTDVLFVYA
Sbjct: 61 SEWTLDYPPFFAWFEFALSHVAKYFDQEMLNVRNLNYSSSRTVLFQRFSVIFTDVLFVYA 120
Query: 398 VHECCKCIDGKKAGKELTEKPKFILSVLLLWNFGLLIVDHIHFQYNGFLFGLMLLSIARL 577
VHECCKCIDGKKAGKELTEKPKFILSVLLLWNFGLLIVDHIHFQYNGFLFGLMLLSIARL
Sbjct: 121 VHECCKCIDGKKAGKELTEKPKFILSVLLLWNFGLLIVDHIHFQYNGFLFGLMLLSIARL 180
Query: 578 FQKRHMEGAFLFAVLLHFKH--IYLYVAPAY 664
FQ + + +F+ L FK + Y AP +
Sbjct: 181 FQNQLPQ---VFSRLFPFKRGLCHAYWAPNF 208
Score = 44.3 bits (103), Expect(2) = 1e-07
Identities = 22/39 (56%), Positives = 29/39 (74%), Gaps = 2/39 (5%)
Frame = +1
Query: 847 PFQRGLCHAYWAPNS-GLVHALDK-CCLSPFSIELLDPA 957
PF+RGLCHAYWAPN L +ALDK + +++LLDP+
Sbjct: 194 PFKRGLCHAYWAPNFWALYNALDKVLSVIGLALKLLDPS 232
Score = 29.6 bits (65), Expect(2) = 1e-07
Identities = 12/14 (85%), Positives = 13/14 (92%)
Frame = +2
Query: 815 NQLPPVFSRLFPFR 856
NQLP VFSRLFPF+
Sbjct: 183 NQLPQVFSRLFPFK 196
>ref|XP_003127995.2| PREDICTED: dolichyl pyrophosphate Man9GlcNAc2
alpha-1,3-glucosyltransferase [Sus scrofa].
Length = 353
Score = 103 bits (257), Expect = 1e-22
Identities = 73/243 (30%), Positives = 116/243 (47%), Gaps = 7/243 (2%)
Frame = +2
Query: 143 DFEVHRNWLAITHSLPISQWYYEATSE----WTLDYPPFFAWFEFALSHVAKYFDQEMLN 310
D+E R+W IT +LPI+QWY+ ++ W LDYPP A+ ++VAK+ + + +
Sbjct: 37 DYEAQRHWQEITFNLPINQWYFNSSDNNLQYWGLDYPPLTAYHSLLCAYVAKFINPDWIA 96
Query: 311 VR-NLNYSSSRTVLFQRFSVIFTDVL-FVYAVHECCKCIDGKKAGKELTEKPKFILSVLL 484
+ + Y S LF R +V+ D+L ++ AV C C+ KE++ K K ++ +
Sbjct: 97 LHTSRGYESQAHKLFMRATVLIADLLIYIPAVVLYCCCL------KEISTKKKIANALCI 150
Query: 485 LWNFGLLIVDHIHFQYNGFLFGLMLLSIARLFQKRHMEGAFLFAVLLHFKHIYLYVAPAY 664
L GL+++D+ HFQYN G L + + + G+ F + +++K + LY + +
Sbjct: 151 LLYPGLILIDYGHFQYNSVSLGFALWGVLGVSYDWDLLGSLAFCLAINYKQMELYHSLPF 210
Query: 665 GIYLLRSYCFTANKPDGSIRWNSFSFVRLISLGLIVFLVSALSLGPFLA-LNQLPPVFSR 841
+LL CF FV LI L V L PF Q V R
Sbjct: 211 FCFLL-GKCFKKG-------LKGKGFVLLIKLACTVVASFILCWLPFFTEREQTLQVLRR 262
Query: 842 LFP 850
LFP
Sbjct: 263 LFP 265
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 23,564,587
Number of extensions: 593475
Number of successful extensions: 1842
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 1839
Number of HSP's successfully gapped: 5
Length of query: 321
Length of database: 11,343,932
Length adjustment: 99
Effective length of query: 222
Effective length of database: 8,879,129
Effective search space: 1971166638
Effective search space used: 1971166638
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 33 (17.3 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003918
(964 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr09 394 e-107
>Sscrofa_Chr09
|| Length = 153670197
Score = 394 bits (199), Expect = e-107
Identities = 199/199 (100%)
Strand = Plus / Minus
Query: 210 aggcaacctcagagtggaccttggactaccctccctttttcgcgtggtttgagttcgccc 269
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13620344 aggcaacctcagagtggaccttggactaccctccctttttcgcgtggtttgagttcgccc 13620285
Query: 270 tgtcacatgttgccaagtattttgatcaagagatgctgaatgtccgtaatctgaattact 329
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13620284 tgtcacatgttgccaagtattttgatcaagagatgctgaatgtccgtaatctgaattact 13620225
Query: 330 ccagctcaaggaccgtgctcttccagaggttttctgtcatcttcacagacgtgctcttcg 389
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13620224 ccagctcaaggaccgtgctcttccagaggttttctgtcatcttcacagacgtgctcttcg 13620165
Query: 390 tgtatgctgtccatgagtg 408
|||||||||||||||||||
Sbjct: 13620164 tgtatgctgtccatgagtg 13620146
Score = 262 bits (132), Expect = 3e-67
Identities = 132/132 (100%)
Strand = Plus / Minus
Query: 1 cgtgtcaagttgattgaaagcgaatggcgccgtagcaatggcggcgctcagaagtgcgac 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13632666 cgtgtcaagttgattgaaagcgaatggcgccgtagcaatggcggcgctcagaagtgcgac 13632607
Query: 61 tggtggtggcaattggttttcggctttggcgctcggggtgacactgctcaagtgccttct 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13632606 tggtggtggcaattggttttcggctttggcgctcggggtgacactgctcaagtgccttct 13632547
Query: 121 catccccaccta 132
||||||||||||
Sbjct: 13632546 catccccaccta 13632535
Score = 256 bits (129), Expect = 2e-65
Identities = 129/129 (100%)
Strand = Plus / Minus
Query: 582 agaaaaggcatatggaaggagcattcctctttgctgttctcctacatttcaagcacatct 641
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13612627 agaaaaggcatatggaaggagcattcctctttgctgttctcctacatttcaagcacatct 13612568
Query: 642 acctctatgtagcaccagcttacggtatatatctgctacgatcttactgtttcactgcaa 701
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13612567 acctctatgtagcaccagcttacggtatatatctgctacgatcttactgtttcactgcaa 13612508
Query: 702 ataaaccag 710
|||||||||
Sbjct: 13612507 ataaaccag 13612499
Score = 218 bits (110), Expect = 4e-54
Identities = 110/110 (100%)
Strand = Plus / Minus
Query: 406 gtgctgtaagtgcattgatgggaaaaaagcaggcaaagaacttacagagaagccaaagtt 465
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13616289 gtgctgtaagtgcattgatgggaaaaaagcaggcaaagaacttacagagaagccaaagtt 13616230
Query: 466 tattctatcagtattactgctgtggaacttcgggttgttaattgtagacc 515
||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13616229 tattctatcagtattactgctgtggaacttcgggttgttaattgtagacc 13616180
Score = 210 bits (106), Expect = 1e-51
Identities = 106/106 (100%)
Strand = Plus / Minus
Query: 709 agatgggtccatccgatggaacagcttcagctttgttcgtcttatttcactgggactgat 768
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13612284 agatgggtccatccgatggaacagcttcagctttgttcgtcttatttcactgggactgat 13612225
Query: 769 tgttttcctagtttctgctctttcattgggtccttttctagccttg 814
||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13612224 tgttttcctagtttctgctctttcattgggtccttttctagccttg 13612179
Score = 159 bits (80), Expect = 3e-36
Identities = 80/80 (100%)
Strand = Plus / Minus
Query: 133 tcattccacagattttgaagtacaccgaaactggcttgctatcacccacagtttgccgat 192
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13627955 tcattccacagattttgaagtacaccgaaactggcttgctatcacccacagtttgccgat 13627896
Query: 193 atcacagtggtattatgagg 212
||||||||||||||||||||
Sbjct: 13627895 atcacagtggtattatgagg 13627876
Score = 149 bits (75), Expect = 3e-33
Identities = 113/119 (94%), Gaps = 5/119 (4%)
Strand = Plus / Minus
Query: 814 gaaccaactgcctccagtcttttcccgactcttccctttc-agaggggcctctgccatgc 872
|||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 13611076 gaaccaactgcctcaagtcttttcccgactcttccctttcaagaggggcctctgccatgc 13611017
Query: 873 atactgggctccaaac-tctgggc-ttgtac-acgctttggac-aagtgctgtctgtca 927
|||||||||||||||| ||||||| |||||| ||||||||||| |||||||||||||||
Sbjct: 13611016 atactgggctccaaacttctgggctttgtacaacgctttggacaaagtgctgtctgtca 13610958
Score = 149 bits (75), Expect = 3e-33
Identities = 113/119 (94%), Gaps = 5/119 (4%)
Strand = Plus / Minus
Query: 814 gaaccaactgcctccagtcttttcccgactcttccctttc-agaggggcctctgccatgc 872
|||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 13843677 gaaccaactgcctcaagtcttttcccgactcttccctttcaagaggggcctctgccatgc 13843618
Query: 873 atactgggctccaaac-tctgggc-ttgtac-acgctttggac-aagtgctgtctgtca 927
|||||||||||||||| ||||||| |||||| ||||||||||| |||||||||||||||
Sbjct: 13843617 atactgggctccaaacttctgggctttgtacaacgctttggacaaagtgctgtctgtca 13843559
Score = 135 bits (68), Expect = 5e-29
Identities = 68/68 (100%)
Strand = Plus / Minus
Query: 516 atattcacttccagtacaatggatttttatttggattaatgctactctccattgcacgat 575
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13615045 atattcacttccagtacaatggatttttatttggattaatgctactctccattgcacgat 13614986
Query: 576 tatttcag 583
||||||||
Sbjct: 13614985 tatttcag 13614978
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 28,644,038
Number of extensions: 179
Number of successful extensions: 179
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 177
Number of HSP's successfully gapped: 9
Length of query: 964
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 943
Effective length of database: 2,808,413,156
Effective search space: 2648333606108
Effective search space used: 2648333606108
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 29 (58.0 bits)