Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003923
(934 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001071544.1| acyl-CoA dehydrogenase family member 9, mito... 456 e-128
Alignment gi|NP_776919.1| very long-chain specific acyl-CoA dehydrogenase... 282 3e-76
Alignment gi|NP_001029554.1| isovaleryl-CoA dehydrogenase, mitochondrial ... 157 1e-38
Alignment gi|NP_001017933.1| short/branched chain specific acyl-CoA dehyd... 133 2e-31
Alignment gi|NP_001068703.1| medium-chain specific acyl-CoA dehydrogenase... 130 1e-30
Alignment gi|NP_001029573.1| short-chain specific acyl-CoA dehydrogenase,... 130 1e-30
Alignment gi|NP_001070404.1| long-chain specific acyl-CoA dehydrogenase, ... 111 1e-24
Alignment gi|NP_001039404.1| glutaryl-CoA dehydrogenase, mitochondrial pr... 110 2e-24
Alignment gi|NP_001069019.1| isobutyryl-CoA dehydrogenase, mitochondrial ... 109 3e-24
Alignment gi|XP_001788796.1| PREDICTED: acyl-Coenzyme A dehydrogenase fam... 76 4e-14
>ref|NP_001071544.1| acyl-CoA dehydrogenase family member 9, mitochondrial [Bos taurus].
Length = 594
Score = 456 bits (1173), Expect = e-128
Identities = 227/259 (87%), Positives = 246/259 (94%)
Frame = +3
Query: 156 RRLLRTSQPSRAFAKELFLGRIEKKEVFPFPEVSQDELNEINQFVGPVEKFFTEEVDSQK 335
RR L TS PSRAFAKELFLG+I KKE FPFPEVS+DELNEINQF+GPVEKFFTEEVDS+K
Sbjct: 26 RRPLLTSPPSRAFAKELFLGKIRKKEAFPFPEVSRDELNEINQFLGPVEKFFTEEVDSRK 85
Query: 336 IDREGKIPNETLEKLKSLGLFGMQVPEEYGGLGLSSTMYARLCEIISLDSSIAVTLAAHQ 515
ID+EGKIP+ETLEKLKSLGLFGMQVPEEYGGLGLS+TMYARL E+I LD+SIAVTLAAHQ
Sbjct: 86 IDQEGKIPDETLEKLKSLGLFGMQVPEEYGGLGLSNTMYARLAEVIGLDASIAVTLAAHQ 145
Query: 516 AIGLKGIIMTGSEEQKAKYLPKLASGEHMAAFCLTEPASGSDAASIRTRATLSEDKKHYV 695
+IGLKGII+ GS+EQKA+YLP+LASGEH+AAFCLTEPASGSDAASIRTRATLS DK HYV
Sbjct: 146 SIGLKGIILAGSKEQKARYLPRLASGEHVAAFCLTEPASGSDAASIRTRATLSADKSHYV 205
Query: 696 LNGSKVWITNGGLASVFTVFAKTEVVDSDGSVKDKITAFIVERDFGGVTSGKPEDKLGIR 875
LNGSKVW+TNGGLA+VFTVFAKTEVVDSDGSVKDKITAFIVERDFGGVT+GK EDK+GIR
Sbjct: 206 LNGSKVWVTNGGLANVFTVFAKTEVVDSDGSVKDKITAFIVERDFGGVTNGKAEDKMGIR 265
Query: 876 GSNTCEVHFEKHRVPVENV 932
GSNTCEVHFE RVPVENV
Sbjct: 266 GSNTCEVHFENTRVPVENV 284
>ref|NP_776919.1| very long-chain specific acyl-CoA dehydrogenase, mitochondrial
precursor [Bos taurus].
Length = 655
Score = 282 bits (722), Expect = 3e-76
Identities = 145/263 (55%), Positives = 190/263 (72%), Gaps = 3/263 (1%)
Frame = +3
Query: 153 SRRLLRTSQPSRAFAKELFLGRIEKKEVFPFPEV-SQDELNEINQFVGPVEKFFTEEVDS 329
S R R + S++FA F G++ +VFP+P V ++D+ + + VGPV +FF E D+
Sbjct: 60 STREKRANSVSKSFAVGTFKGQLTTDQVFPYPSVLNEDQTQFLKELVGPVTRFFEEVNDA 119
Query: 330 QKIDREGKIPNETLEKLKSLGLFGMQVPEEYGGLGLSSTMYARLCEIISL-DSSIAVTLA 506
K D ++ T++ LK LG FG+QVP E GG+GL +T YARL EI+ + D + + L
Sbjct: 120 AKNDMLERVEETTMQGLKELGAFGLQVPNELGGVGLCNTQYARLVEIVGMYDLGVGIVLG 179
Query: 507 AHQAIGLKGIIMTGSEEQKAKYLPKLASGEHMAAFCLTEPASGSDAASIRTRATLSEDKK 686
AHQ+IG KGI++ G++ QK KYLPKLASGE +AAFCLTEP+SGSDAASIR+ A S K
Sbjct: 180 AHQSIGFKGILLFGTKAQKEKYLPKLASGETIAAFCLTEPSSGSDAASIRSSAVPSPCGK 239
Query: 687 HYVLNGSKVWITNGGLASVFTVFAKTEVVD-SDGSVKDKITAFIVERDFGGVTSGKPEDK 863
+Y LNGSK+WI+NGGLA +FTVFAKT V D + G+VK+KITAF+VER FGGVT G PE K
Sbjct: 240 YYTLNGSKIWISNGGLADIFTVFAKTPVTDTATGAVKEKITAFVVERSFGGVTHGPPEKK 299
Query: 864 LGIRGSNTCEVHFEKHRVPVENV 932
+GI+ SNT EV+F+ RVP ENV
Sbjct: 300 MGIKASNTAEVYFDGVRVPAENV 322
>ref|NP_001029554.1| isovaleryl-CoA dehydrogenase, mitochondrial precursor [Bos taurus].
Length = 426
Score = 157 bits (397), Expect = 1e-38
Identities = 96/233 (41%), Positives = 136/233 (58%), Gaps = 9/233 (3%)
Frame = +3
Query: 261 DELNEIN----QFVGPVEKFFTEEV--DSQKIDREGKIPN--ETLEKLKSLGLFGMQVPE 416
D +N +N Q V KF E + +Q+ID+ + N E ++L +LG+ G+ P
Sbjct: 40 DAVNGLNEEQKQLRQTVAKFLQEHLAPQAQEIDQSNEFKNLREFWKQLGNLGVLGITAPV 99
Query: 417 EYGGLGLSSTMYARLCEIIS-LDSSIAVTLAAHQAIGLKGIIMTGSEEQKAKYLPKLASG 593
+YGG GL + E IS + ++ ++ AH + + I+ G+E QK KYLPKL SG
Sbjct: 100 QYGGSGLGFLENVLVMEEISRVSGAVGLSYGAHSNLCINQIVRNGNETQKEKYLPKLISG 159
Query: 594 EHMAAFCLTEPASGSDAASIRTRATLSEDKKHYVLNGSKVWITNGGLASVFTVFAKTEVV 773
E++ A ++EP +GSD S++ +A D HYVLNG+K WITNG A V V+AKT+V
Sbjct: 160 EYIGALAMSEPNAGSDVVSMKLKAEKKGD--HYVLNGNKFWITNGPDADVLVVYAKTDVT 217
Query: 774 DSDGSVKDKITAFIVERDFGGVTSGKPEDKLGIRGSNTCEVHFEKHRVPVENV 932
S ITAFIVE+ G ++ K DKLG+RGSNTCE+ FE VP N+
Sbjct: 218 AVPAS--RGITAFIVEKGMPGFSTSKKLDKLGMRGSNTCELVFEDCEVPAANI 268
>ref|NP_001017933.1| short/branched chain specific acyl-CoA dehydrogenase, mitochondrial
[Bos taurus].
Length = 432
Score = 133 bits (335), Expect = 2e-31
Identities = 81/215 (37%), Positives = 126/215 (58%), Gaps = 3/215 (1%)
Frame = +3
Query: 297 VEKFFTEEVDS--QKIDREGKIPNETLEKLKSLGLFGMQVPEEYGGLGLSSTMYARLCE- 467
V+KF E+V K+D + K+ ++ L GL G+++ +YGG G S + E
Sbjct: 68 VKKFAQEQVAPFVSKMDEDSKMEKSVIQGLFQQGLMGIEIDTKYGGTGASFFSSVLVIEE 127
Query: 468 IISLDSSIAVTLAAHQAIGLKGIIMTGSEEQKAKYLPKLASGEHMAAFCLTEPASGSDAA 647
+ +D+S+A+ + + I G+EEQKA YLPKLA+ E ++ C++E +GSD+
Sbjct: 128 LAKVDASVALVCDIQNTLINRMIGKYGTEEQKATYLPKLAT-EKASSICISETGAGSDSF 186
Query: 648 SIRTRATLSEDKKHYVLNGSKVWITNGGLASVFTVFAKTEVVDSDGSVKDKITAFIVERD 827
+++TRA D +Y++NGSK+WI++ +A +F V A D K IT F+V+ D
Sbjct: 187 AMKTRADKKGD--YYIINGSKMWISSAEIAGLFVVMANA---DFSAGYKG-ITCFLVDGD 240
Query: 828 FGGVTSGKPEDKLGIRGSNTCEVHFEKHRVPVENV 932
G+ GKPE+KLGIR S+TC V FE +VP N+
Sbjct: 241 TEGLHVGKPENKLGIRASSTCPVTFENVKVPKTNI 275
>ref|NP_001068703.1| medium-chain specific acyl-CoA dehydrogenase, mitochondrial
precursor [Bos taurus].
Length = 421
Score = 130 bits (328), Expect = 1e-30
Identities = 76/219 (34%), Positives = 120/219 (54%), Gaps = 2/219 (0%)
Frame = +3
Query: 282 QFVGPVEKFFTEEVD--SQKIDREGKIPNETLEKLKSLGLFGMQVPEEYGGLGLSSTMYA 455
+F KF EE+ + + D+ G+ P +++ LGL +PE GGLGL +
Sbjct: 47 EFQATARKFAREEIIPLAAEYDKTGEYPVPLIKRAWELGLMNTHIPESCGGLGLGTFDSC 106
Query: 456 RLCEIISLDSSIAVTLAAHQAIGLKGIIMTGSEEQKAKYLPKLASGEHMAAFCLTEPASG 635
+ E ++ + T ++G +I+ G+++Q+ KYL ++ M A+C+TEP +G
Sbjct: 107 LISEELAYGCTGVQTAIEANSLGQMPVIIAGNDQQQKKYLGRMTEEPLMCAYCVTEPVAG 166
Query: 636 SDAASIRTRATLSEDKKHYVLNGSKVWITNGGLASVFTVFAKTEVVDSDGSVKDKITAFI 815
SD A I+T+A D+ Y++NG K+WITNGG A+ + + A+++ D T FI
Sbjct: 167 SDVAGIKTKAEKKGDE--YIINGQKMWITNGGKANWYFLLARSD-PDPKAPASKAFTGFI 223
Query: 816 VERDFGGVTSGKPEDKLGIRGSNTCEVHFEKHRVPVENV 932
VE D GV G+ E +G R S+T + FE RVP ENV
Sbjct: 224 VEADTPGVQIGRKELNMGQRCSDTRGIVFEDVRVPKENV 262
>ref|NP_001029573.1| short-chain specific acyl-CoA dehydrogenase, mitochondrial
precursor [Bos taurus].
Length = 412
Score = 130 bits (328), Expect = 1e-30
Identities = 84/228 (36%), Positives = 128/228 (56%), Gaps = 5/228 (2%)
Frame = +3
Query: 264 ELNEINQFVGPVEKFFTEEV---DSQKIDREGKIPNETLEKLKSLGLFGMQVPEEYGGLG 434
EL E +Q + + F E+ + ++D+E + P ++K+ LGL M VPEE G G
Sbjct: 33 ELPETHQMLRQTCRDFAEKELFPIAAQVDKEHRFPAAQVKKMGELGLMAMNVPEELSGAG 92
Query: 435 LSSTMYARLCEIISLD-SSIAVTLAAHQAIGLKGIIMTGSEEQKAKYLPKLASGEHMAAF 611
L Y+ E IS +S V ++ + ++ L I+ G++EQK +++ SG+ + F
Sbjct: 93 LDYLAYSIAMEEISRGCASTGVIMSVNNSLYLGPILKFGTKEQKQQWVAPFTSGDKIGCF 152
Query: 612 CLTEPASGSDAASIRTRATLSEDKKHYVLNGSKVWITNGGLASVFTVFAKTEVVDSDGSV 791
L+EP +GSDA + T A D +VL+G+K WITN AS VFA T D S+
Sbjct: 153 ALSEPGNGSDAGAAATTARADGDS--WVLSGTKAWITNAWEASAVVVFAST-----DRSL 205
Query: 792 KDK-ITAFIVERDFGGVTSGKPEDKLGIRGSNTCEVHFEKHRVPVENV 932
+K I+AF+V G+T GK EDKLGIR S+T + FE R+P +++
Sbjct: 206 HNKGISAFLVPMPTPGLTLGKKEDKLGIRASSTANLIFEDRRIPKDSL 253
>ref|NP_001070404.1| long-chain specific acyl-CoA dehydrogenase, mitochondrial [Bos
taurus].
Length = 430
Score = 111 bits (277), Expect = 1e-24
Identities = 70/210 (33%), Positives = 107/210 (50%), Gaps = 2/210 (0%)
Frame = +3
Query: 297 VEKFFTEEVDSQKIDRE--GKIPNETLEKLKSLGLFGMQVPEEYGGLGLSSTMYARLCEI 470
V KFF EEV + E G++ E EK GL G+ + + +GG+G A + E
Sbjct: 64 VRKFFQEEVIPYHAEWEKAGEVSRELWEKAGKQGLLGISIADHHGGIGGDLYSSAIVWEE 123
Query: 471 ISLDSSIAVTLAAHQAIGLKGIIMTGSEEQKAKYLPKLASGEHMAAFCLTEPASGSDAAS 650
+ + H I + I GSEEQ +++P++ +G+ + A +TEP +GSD
Sbjct: 124 QAYSNCTGPGFGLHSDIVMPYITNYGSEEQIKRFIPEMVAGKCIGAIAMTEPGAGSDLQG 183
Query: 651 IRTRATLSEDKKHYVLNGSKVWITNGGLASVFTVFAKTEVVDSDGSVKDKITAFIVERDF 830
IRT A +D ++LNGSKV++TNG L + + A T S I+ F+VE
Sbjct: 184 IRTNA--KKDGSDWILNGSKVFVTNGWLCDIVIIVAITN--REAHSPAHGISLFLVENGM 239
Query: 831 GGVTSGKPEDKLGIRGSNTCEVHFEKHRVP 920
G G+ DK+G++ +T E FE R+P
Sbjct: 240 KGFIKGRKLDKIGLKAQDTAEFFFEDVRLP 269
>ref|NP_001039404.1| glutaryl-CoA dehydrogenase, mitochondrial precursor [Bos taurus].
Length = 438
Score = 110 bits (275), Expect = 2e-24
Identities = 66/191 (34%), Positives = 103/191 (53%), Gaps = 1/191 (0%)
Frame = +3
Query: 363 ETLEKLKSLGLFGMQVPEEYGGLGLSSTMYARLC-EIISLDSSIAVTLAAHQAIGLKGII 539
E + ++ LG+ G + + Y G+SS Y L E+ +DS ++ ++ + I
Sbjct: 95 EIISEMGELGMLGPTI-QGYSCAGVSSVAYGLLARELERVDSGYRSAMSVQSSLVMYPIY 153
Query: 540 MTGSEEQKAKYLPKLASGEHMAAFCLTEPASGSDAASIRTRATLSEDKKHYVLNGSKVWI 719
GSEEQK KYLP+LA GE + F LTEP GSD + + TRA + + Y+L+GSK WI
Sbjct: 154 AYGSEEQKQKYLPRLAKGELLGCFGLTEPNHGSDPSGMETRARHNPSSRSYILSGSKTWI 213
Query: 720 TNGGLASVFTVFAKTEVVDSDGSVKDKITAFIVERDFGGVTSGKPEDKLGIRGSNTCEVH 899
TN +A + V+A+ E I F++E+ G+++ + E K +R S+T +
Sbjct: 214 TNSPVADLLIVWARCE--------DSCIRGFLLEKGMRGLSTPRIEGKFSLRASSTGMII 265
Query: 900 FEKHRVPVENV 932
+ VP ENV
Sbjct: 266 MDDVEVPEENV 276
>ref|NP_001069019.1| isobutyryl-CoA dehydrogenase, mitochondrial precursor [Bos taurus].
Length = 416
Score = 109 bits (273), Expect = 3e-24
Identities = 70/197 (35%), Positives = 102/197 (51%)
Frame = +3
Query: 339 DREGKIPNETLEKLKSLGLFGMQVPEEYGGLGLSSTMYARLCEIISLDSSIAVTLAAHQA 518
D++ P +T+ K LG G+ V + GG GLS + + E ++ + +
Sbjct: 69 DQKELFPVDTMRKAAQLGFGGVYVQTDVGGAGLSRLDTSIIFEALATGCTSTTAYMSIHN 128
Query: 519 IGLKGIIMTGSEEQKAKYLPKLASGEHMAAFCLTEPASGSDAASIRTRATLSEDKKHYVL 698
+ + I GSEEQ+ + P L + E A++CLTEP SGSDAAS+ T A D HY+L
Sbjct: 129 MCVWIIDRFGSEEQRHRLCPPLCTMEKFASYCLTEPGSGSDAASLMTSAVRQHD--HYIL 186
Query: 699 NGSKVWITNGGLASVFTVFAKTEVVDSDGSVKDKITAFIVERDFGGVTSGKPEDKLGIRG 878
NGSK +I+ GG A ++ V +T G I+ +VE+ G++ GK E K+G
Sbjct: 187 NGSKAFISGGGEADIYVVMCRT-----GGPGPRGISCVVVEKGTPGLSFGKKEKKVGWNS 241
Query: 879 SNTCEVHFEKHRVPVEN 929
T V FE VPV N
Sbjct: 242 QPTQAVIFEDCAVPVAN 258
>ref|XP_001788796.1| PREDICTED: acyl-Coenzyme A dehydrogenase family, member 10 [Bos
taurus].
Length = 905
Score = 76.3 bits (186), Expect = 4e-14
Identities = 65/201 (32%), Positives = 101/201 (50%), Gaps = 14/201 (6%)
Frame = +3
Query: 372 EKLKSLGLFGMQVP-----EEYGGLGLSSTMYARLCEII--SLDSSIAVTLAAHQAIGLK 530
EK K+ GL+ + +P E+ G GL++ YA LCE++ SL + +A ++
Sbjct: 555 EKAKAEGLWNLFLPLETDPEKKYGAGLTNVEYAHLCEVMGTSLYAPEIFNCSAPDTGNME 614
Query: 531 GIIMTGSEEQKAKYLPKLASGEHMAAFCLTEP-ASGSDAASIRTRATLSEDKKHYVLNGS 707
++ G+EEQKA++L L G+ + F +TEP + SDA +I +++ E+ YV+NG
Sbjct: 615 LLVRYGTEEQKARWLIPLLEGKARSCFAMTEPQVASSDATNI--ESSIREEDGFYVINGH 672
Query: 708 KVWITNGGLASVFTVFAKTEVVDSDGSVKDKITAFIVERDFGGVTSGKP------EDKLG 869
K WIT G L + D + + F+V D G+ +P ED G
Sbjct: 673 KWWIT-GILDPRCQLCVFMGKTDPHAPRHQQQSMFLVPMDTPGIKIIRPLRVYGLEDAPG 731
Query: 870 IRGSNTCEVHFEKHRVPVENV 932
G EV FE+ RVP EN+
Sbjct: 732 GHG----EVLFEQVRVPKENI 748
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 37,243,202
Number of extensions: 1102291
Number of successful extensions: 4590
Number of sequences better than 1.0e-05: 15
Number of HSP's gapped: 4550
Number of HSP's successfully gapped: 15
Length of query: 311
Length of database: 17,681,374
Length adjustment: 102
Effective length of query: 209
Effective length of database: 14,306,398
Effective search space: 2990037182
Effective search space used: 2990037182
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003923
(934 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_533725.2| PREDICTED: similar to acyl-Coenzyme A dehydroge... 468 e-132
Alignment gi|XP_857944.1| PREDICTED: similar to acyl-Coenzyme A dehydroge... 468 e-132
Alignment gi|XP_857243.1| PREDICTED: similar to Acyl-CoA dehydrogenase, v... 285 6e-77
Alignment gi|XP_857195.1| PREDICTED: similar to Acyl-CoA dehydrogenase, v... 285 6e-77
Alignment gi|XP_546581.2| PREDICTED: similar to Acyl-CoA dehydrogenase, v... 285 6e-77
Alignment gi|XP_857153.1| PREDICTED: similar to Acyl-CoA dehydrogenase, v... 247 1e-65
Alignment gi|XP_857108.1| PREDICTED: similar to Acyl-CoA dehydrogenase, v... 224 7e-59
Alignment gi|XP_857067.1| PREDICTED: similar to Acyl-CoA dehydrogenase, v... 190 1e-48
Alignment gi|XP_535433.2| PREDICTED: similar to Isovaleryl-CoA dehydrogen... 152 4e-37
Alignment gi|XP_857999.1| PREDICTED: similar to Isovaleryl-CoA dehydrogen... 149 4e-36
>ref|XP_533725.2| PREDICTED: similar to acyl-Coenzyme A dehydrogenase family, member
9 isoform 1 [Canis familiaris].
Length = 621
Score = 468 bits (1203), Expect = e-132
Identities = 230/260 (88%), Positives = 251/260 (96%)
Frame = +3
Query: 153 SRRLLRTSQPSRAFAKELFLGRIEKKEVFPFPEVSQDELNEINQFVGPVEKFFTEEVDSQ 332
SRRLLRTS PSRAFAK+LFLG+IEKKEVFPFPEVSQDELNEINQFVGP+EKFFTEEVDS+
Sbjct: 26 SRRLLRTSPPSRAFAKQLFLGKIEKKEVFPFPEVSQDELNEINQFVGPLEKFFTEEVDSE 85
Query: 333 KIDREGKIPNETLEKLKSLGLFGMQVPEEYGGLGLSSTMYARLCEIISLDSSIAVTLAAH 512
+IDREGKIPNETLEKLK+LGLFGMQVPEEYGGLGLS+TMYARL EII LD SIAVTLAAH
Sbjct: 86 RIDREGKIPNETLEKLKNLGLFGMQVPEEYGGLGLSNTMYARLGEIIGLDGSIAVTLAAH 145
Query: 513 QAIGLKGIIMTGSEEQKAKYLPKLASGEHMAAFCLTEPASGSDAASIRTRATLSEDKKHY 692
QAIGLKGII+ G++EQKAKYLP+LASGEH+AAFCLTEP SGSDAASI+TRATLSEDKKHY
Sbjct: 146 QAIGLKGIILAGNKEQKAKYLPRLASGEHIAAFCLTEPTSGSDAASIKTRATLSEDKKHY 205
Query: 693 VLNGSKVWITNGGLASVFTVFAKTEVVDSDGSVKDKITAFIVERDFGGVTSGKPEDKLGI 872
+LNGSK+WITNGG+A+VFTVFAKT+VVDSDGSVKDKITA IVERDFGGVT+GKPEDKLGI
Sbjct: 206 ILNGSKIWITNGGIANVFTVFAKTQVVDSDGSVKDKITALIVERDFGGVTNGKPEDKLGI 265
Query: 873 RGSNTCEVHFEKHRVPVENV 932
RGSNTCEVHFE +VP+ENV
Sbjct: 266 RGSNTCEVHFENTKVPIENV 285
>ref|XP_857944.1| PREDICTED: similar to acyl-Coenzyme A dehydrogenase family, member
9 isoform 3 [Canis familiaris].
Length = 332
Score = 468 bits (1203), Expect = e-132
Identities = 230/260 (88%), Positives = 251/260 (96%)
Frame = +3
Query: 153 SRRLLRTSQPSRAFAKELFLGRIEKKEVFPFPEVSQDELNEINQFVGPVEKFFTEEVDSQ 332
SRRLLRTS PSRAFAK+LFLG+IEKKEVFPFPEVSQDELNEINQFVGP+EKFFTEEVDS+
Sbjct: 26 SRRLLRTSPPSRAFAKQLFLGKIEKKEVFPFPEVSQDELNEINQFVGPLEKFFTEEVDSE 85
Query: 333 KIDREGKIPNETLEKLKSLGLFGMQVPEEYGGLGLSSTMYARLCEIISLDSSIAVTLAAH 512
+IDREGKIPNETLEKLK+LGLFGMQVPEEYGGLGLS+TMYARL EII LD SIAVTLAAH
Sbjct: 86 RIDREGKIPNETLEKLKNLGLFGMQVPEEYGGLGLSNTMYARLGEIIGLDGSIAVTLAAH 145
Query: 513 QAIGLKGIIMTGSEEQKAKYLPKLASGEHMAAFCLTEPASGSDAASIRTRATLSEDKKHY 692
QAIGLKGII+ G++EQKAKYLP+LASGEH+AAFCLTEP SGSDAASI+TRATLSEDKKHY
Sbjct: 146 QAIGLKGIILAGNKEQKAKYLPRLASGEHIAAFCLTEPTSGSDAASIKTRATLSEDKKHY 205
Query: 693 VLNGSKVWITNGGLASVFTVFAKTEVVDSDGSVKDKITAFIVERDFGGVTSGKPEDKLGI 872
+LNGSK+WITNGG+A+VFTVFAKT+VVDSDGSVKDKITA IVERDFGGVT+GKPEDKLGI
Sbjct: 206 ILNGSKIWITNGGIANVFTVFAKTQVVDSDGSVKDKITALIVERDFGGVTNGKPEDKLGI 265
Query: 873 RGSNTCEVHFEKHRVPVENV 932
RGSNTCEVHFE +VP+ENV
Sbjct: 266 RGSNTCEVHFENTKVPIENV 285
>ref|XP_857243.1| PREDICTED: similar to Acyl-CoA dehydrogenase, very-long-chain
specific, mitochondrial precursor (VLCAD) isoform 7
[Canis familiaris].
Length = 522
Score = 285 bits (728), Expect = 6e-77
Identities = 146/253 (57%), Positives = 186/253 (73%), Gaps = 3/253 (1%)
Frame = +3
Query: 183 SRAFAKELFLGRIEKKEVFPFPEV-SQDELNEINQFVGPVEKFFTEEVDSQKIDREGKIP 359
S++FA +F G++ +VFP+P V S+++ + + VGPV +FF E D K D K+
Sbjct: 65 SKSFAAGMFKGQLTTDQVFPYPSVLSEEQTQFLKELVGPVSRFFEEVNDPAKNDTLEKVE 124
Query: 360 NETLEKLKSLGLFGMQVPEEYGGLGLSSTMYARLCEIISL-DSSIAVTLAAHQAIGLKGI 536
TL+ LK LG FG+QVP E GG+GL +T YARL EI+ D + +TL AHQ+IG KGI
Sbjct: 125 ETTLQGLKELGAFGLQVPSELGGVGLCNTQYARLVEIVGTHDLGVGITLGAHQSIGFKGI 184
Query: 537 IMTGSEEQKAKYLPKLASGEHMAAFCLTEPASGSDAASIRTRATLSEDKKHYVLNGSKVW 716
++ G++ QK KYLPKLASGE +AAFCLTEP+SGSDAASIR+ A S K+Y LNGSK+W
Sbjct: 185 LLFGTKAQKEKYLPKLASGESIAAFCLTEPSSGSDAASIRSSAVPSPCGKYYTLNGSKIW 244
Query: 717 ITNGGLASVFTVFAKTEVVD-SDGSVKDKITAFIVERDFGGVTSGKPEDKLGIRGSNTCE 893
I+NGGLA VFTVFAKT V D + G+VK+KITAF+VER FGGVT G PE K+GI+ SNT E
Sbjct: 245 ISNGGLADVFTVFAKTPVTDAATGAVKEKITAFVVERSFGGVTHGPPEKKMGIKASNTAE 304
Query: 894 VHFEKHRVPVENV 932
V+F+ RVP ENV
Sbjct: 305 VYFDSVRVPAENV 317
>ref|XP_857195.1| PREDICTED: similar to Acyl-CoA dehydrogenase, very-long-chain
specific, mitochondrial precursor (VLCAD) isoform 6
[Canis familiaris].
Length = 487
Score = 285 bits (728), Expect = 6e-77
Identities = 146/253 (57%), Positives = 186/253 (73%), Gaps = 3/253 (1%)
Frame = +3
Query: 183 SRAFAKELFLGRIEKKEVFPFPEV-SQDELNEINQFVGPVEKFFTEEVDSQKIDREGKIP 359
S++FA +F G++ +VFP+P V S+++ + + VGPV +FF E D K D K+
Sbjct: 65 SKSFAAGMFKGQLTTDQVFPYPSVLSEEQTQFLKELVGPVSRFFEEVNDPAKNDTLEKVE 124
Query: 360 NETLEKLKSLGLFGMQVPEEYGGLGLSSTMYARLCEIISL-DSSIAVTLAAHQAIGLKGI 536
TL+ LK LG FG+QVP E GG+GL +T YARL EI+ D + +TL AHQ+IG KGI
Sbjct: 125 ETTLQGLKELGAFGLQVPSELGGVGLCNTQYARLVEIVGTHDLGVGITLGAHQSIGFKGI 184
Query: 537 IMTGSEEQKAKYLPKLASGEHMAAFCLTEPASGSDAASIRTRATLSEDKKHYVLNGSKVW 716
++ G++ QK KYLPKLASGE +AAFCLTEP+SGSDAASIR+ A S K+Y LNGSK+W
Sbjct: 185 LLFGTKAQKEKYLPKLASGESIAAFCLTEPSSGSDAASIRSSAVPSPCGKYYTLNGSKIW 244
Query: 717 ITNGGLASVFTVFAKTEVVD-SDGSVKDKITAFIVERDFGGVTSGKPEDKLGIRGSNTCE 893
I+NGGLA VFTVFAKT V D + G+VK+KITAF+VER FGGVT G PE K+GI+ SNT E
Sbjct: 245 ISNGGLADVFTVFAKTPVTDAATGAVKEKITAFVVERSFGGVTHGPPEKKMGIKASNTAE 304
Query: 894 VHFEKHRVPVENV 932
V+F+ RVP ENV
Sbjct: 305 VYFDSVRVPAENV 317
>ref|XP_546581.2| PREDICTED: similar to Acyl-CoA dehydrogenase, very-long-chain
specific, mitochondrial precursor (VLCAD) isoform 1
[Canis familiaris].
Length = 650
Score = 285 bits (728), Expect = 6e-77
Identities = 146/253 (57%), Positives = 186/253 (73%), Gaps = 3/253 (1%)
Frame = +3
Query: 183 SRAFAKELFLGRIEKKEVFPFPEV-SQDELNEINQFVGPVEKFFTEEVDSQKIDREGKIP 359
S++FA +F G++ +VFP+P V S+++ + + VGPV +FF E D K D K+
Sbjct: 65 SKSFAAGMFKGQLTTDQVFPYPSVLSEEQTQFLKELVGPVSRFFEEVNDPAKNDTLEKVE 124
Query: 360 NETLEKLKSLGLFGMQVPEEYGGLGLSSTMYARLCEIISL-DSSIAVTLAAHQAIGLKGI 536
TL+ LK LG FG+QVP E GG+GL +T YARL EI+ D + +TL AHQ+IG KGI
Sbjct: 125 ETTLQGLKELGAFGLQVPSELGGVGLCNTQYARLVEIVGTHDLGVGITLGAHQSIGFKGI 184
Query: 537 IMTGSEEQKAKYLPKLASGEHMAAFCLTEPASGSDAASIRTRATLSEDKKHYVLNGSKVW 716
++ G++ QK KYLPKLASGE +AAFCLTEP+SGSDAASIR+ A S K+Y LNGSK+W
Sbjct: 185 LLFGTKAQKEKYLPKLASGESIAAFCLTEPSSGSDAASIRSSAVPSPCGKYYTLNGSKIW 244
Query: 717 ITNGGLASVFTVFAKTEVVD-SDGSVKDKITAFIVERDFGGVTSGKPEDKLGIRGSNTCE 893
I+NGGLA VFTVFAKT V D + G+VK+KITAF+VER FGGVT G PE K+GI+ SNT E
Sbjct: 245 ISNGGLADVFTVFAKTPVTDAATGAVKEKITAFVVERSFGGVTHGPPEKKMGIKASNTAE 304
Query: 894 VHFEKHRVPVENV 932
V+F+ RVP ENV
Sbjct: 305 VYFDSVRVPAENV 317
>ref|XP_857153.1| PREDICTED: similar to Acyl-CoA dehydrogenase, very-long-chain
specific, mitochondrial precursor (VLCAD) isoform 5
[Canis familiaris].
Length = 563
Score = 247 bits (631), Expect = 1e-65
Identities = 133/253 (52%), Positives = 171/253 (67%), Gaps = 3/253 (1%)
Frame = +3
Query: 183 SRAFAKELFLGRIEKKEVFPFPEV-SQDELNEINQFVGPVEKFFTEEVDSQKIDREGKIP 359
S++FA +F G++ +VFP+P V S+++ + + VGPV +FF E D K D K+
Sbjct: 65 SKSFAAGMFKGQLTTDQVFPYPSVLSEEQTQFLKELVGPVSRFFEEVNDPAKNDTLEKVE 124
Query: 360 NETLEKLKSLGLFGMQVPEEYGGLGLSSTMYARLCEIISL-DSSIAVTLAAHQAIGLKGI 536
TL+ LK LG FG+QVP E GG+GL +T YARL EI+ D + +TL AHQ+IG KGI
Sbjct: 125 ETTLQGLKELGAFGLQVPSELGGVGLCNTQYARLVEIVGTHDLGVGITLGAHQSIGFKGI 184
Query: 537 IMTGSEEQKAKYLPKLASGEHMAAFCLTEPASGSDAASIRTRATLSEDKKHYVLNGSKVW 716
++ G++ QK KYLPKLAS DAASIR+ A S K+Y LNGSK+W
Sbjct: 185 LLFGTKAQKEKYLPKLAS----------------DAASIRSSAVPSPCGKYYTLNGSKIW 228
Query: 717 ITNGGLASVFTVFAKTEVVDS-DGSVKDKITAFIVERDFGGVTSGKPEDKLGIRGSNTCE 893
I+NGGLA VFTVFAKT V D+ G+VK+KITAF+VER FGGVT G PE K+GI+ SNT E
Sbjct: 229 ISNGGLADVFTVFAKTPVTDAATGAVKEKITAFVVERSFGGVTHGPPEKKMGIKASNTAE 288
Query: 894 VHFEKHRVPVENV 932
V+F+ RVP ENV
Sbjct: 289 VYFDSVRVPAENV 301
>ref|XP_857108.1| PREDICTED: similar to Acyl-CoA dehydrogenase, very-long-chain
specific, mitochondrial precursor (VLCAD) isoform 4
[Canis familiaris].
Length = 615
Score = 224 bits (572), Expect = 7e-59
Identities = 124/252 (49%), Positives = 157/252 (62%), Gaps = 2/252 (0%)
Frame = +3
Query: 183 SRAFAKELFLGRIEKKEVFPFPEV-SQDELNEINQFVGPVEKFFTEEVDSQKIDREGKIP 359
S++FA +F G++ +VFP+P V S+++ + + VGPV +FF E D K D K+
Sbjct: 65 SKSFAAGMFKGQLTTDQVFPYPSVLSEEQTQFLKELVGPVSRFFEEVNDPAKNDTLEKVE 124
Query: 360 NETLEKLKSLGLFGMQVPEEYGGLGLSSTMYARLCEIISLDSSIAVTLAAHQAIGLKGII 539
TL+ LK LG FG+QVP E GG+GL +T YARL EI+
Sbjct: 125 ETTLQGLKELGAFGLQVPSELGGVGLCNTQYARLVEIVGTHDL----------------- 167
Query: 540 MTGSEEQKAKYLPKLASGEHMAAFCLTEPASGSDAASIRTRATLSEDKKHYVLNGSKVWI 719
GE +AAFCLTEP+SGSDAASIR+ A S K+Y LNGSK+WI
Sbjct: 168 -----------------GESIAAFCLTEPSSGSDAASIRSSAVPSPCGKYYTLNGSKIWI 210
Query: 720 TNGGLASVFTVFAKTEVVD-SDGSVKDKITAFIVERDFGGVTSGKPEDKLGIRGSNTCEV 896
+NGGLA VFTVFAKT V D + G+VK+KITAF+VER FGGVT G PE K+GI+ SNT EV
Sbjct: 211 SNGGLADVFTVFAKTPVTDAATGAVKEKITAFVVERSFGGVTHGPPEKKMGIKASNTAEV 270
Query: 897 HFEKHRVPVENV 932
+F+ RVP ENV
Sbjct: 271 YFDSVRVPAENV 282
>ref|XP_857067.1| PREDICTED: similar to Acyl-CoA dehydrogenase, very-long-chain
specific, mitochondrial precursor (VLCAD) isoform 3
[Canis familiaris].
Length = 263
Score = 190 bits (483), Expect = 1e-48
Identities = 97/181 (53%), Positives = 128/181 (70%), Gaps = 2/181 (1%)
Frame = +3
Query: 183 SRAFAKELFLGRIEKKEVFPFPEV-SQDELNEINQFVGPVEKFFTEEVDSQKIDREGKIP 359
S++FA +F G++ +VFP+P V S+++ + + VGPV +FF E D K D K+
Sbjct: 65 SKSFAAGMFKGQLTTDQVFPYPSVLSEEQTQFLKELVGPVSRFFEEVNDPAKNDTLEKVE 124
Query: 360 NETLEKLKSLGLFGMQVPEEYGGLGLSSTMYARLCEIISL-DSSIAVTLAAHQAIGLKGI 536
TL+ LK LG FG+QVP E GG+GL +T YARL EI+ D + +TL AHQ+IG KGI
Sbjct: 125 ETTLQGLKELGAFGLQVPSELGGVGLCNTQYARLVEIVGTHDLGVGITLGAHQSIGFKGI 184
Query: 537 IMTGSEEQKAKYLPKLASGEHMAAFCLTEPASGSDAASIRTRATLSEDKKHYVLNGSKVW 716
++ G++ QK KYLPKLASGE +AAFCLTEP+SGSDAASIR+ A S K+Y LNGSK+W
Sbjct: 185 LLFGTKAQKEKYLPKLASGESIAAFCLTEPSSGSDAASIRSSAVPSPCGKYYTLNGSKIW 244
Query: 717 I 719
I
Sbjct: 245 I 245
>ref|XP_535433.2| PREDICTED: similar to Isovaleryl-CoA dehydrogenase, mitochondrial
precursor (IVD) isoform 1 [Canis familiaris].
Length = 423
Score = 152 bits (384), Expect = 4e-37
Identities = 89/225 (39%), Positives = 134/225 (59%), Gaps = 5/225 (2%)
Frame = +3
Query: 273 EINQFVGPVEKFFTEEV--DSQKIDREGKIPN--ETLEKLKSLGLFGMQVPEEYGGLGLS 440
E Q + KF E + +Q+ID + N E ++L +LG+ G+ P +YGG GL
Sbjct: 45 EQKQLRQTMAKFLQEHLAPQAQEIDHFNEFKNLREFWKQLGNLGVLGITAPAQYGGSGLG 104
Query: 441 STMYARLCEIIS-LDSSIAVTLAAHQAIGLKGIIMTGSEEQKAKYLPKLASGEHMAAFCL 617
+ E IS + +++ ++ AH + L I+ G+E QK KYLPKL SGE++ A +
Sbjct: 105 YLEQVLVMEEISRVSAAVGLSYGAHSNLCLNQIVRNGNEAQKEKYLPKLISGEYIGALAM 164
Query: 618 TEPASGSDAASIRTRATLSEDKKHYVLNGSKVWITNGGLASVFTVFAKTEVVDSDGSVKD 797
+EP +GSD S++ +A D +Y+LNG+K WITNG A + ++AKT++ S
Sbjct: 165 SEPNAGSDVVSMKLKAEKKGD--YYILNGNKFWITNGPDADILIIYAKTDLAVVPAS--R 220
Query: 798 KITAFIVERDFGGVTSGKPEDKLGIRGSNTCEVHFEKHRVPVENV 932
ITAFIVE++ G ++ K DKLG+RGSNTCE+ FE +VP N+
Sbjct: 221 GITAFIVEKNMPGFSTSKKLDKLGMRGSNTCELIFEDCKVPAANI 265
>ref|XP_857999.1| PREDICTED: similar to Isovaleryl-CoA dehydrogenase, mitochondrial
precursor (IVD) isoform 3 [Canis familiaris].
Length = 289
Score = 149 bits (376), Expect = 4e-36
Identities = 88/221 (39%), Positives = 132/221 (59%), Gaps = 5/221 (2%)
Frame = +3
Query: 273 EINQFVGPVEKFFTEEV--DSQKIDREGKIPN--ETLEKLKSLGLFGMQVPEEYGGLGLS 440
E Q + KF E + +Q+ID + N E ++L +LG+ G+ P +YGG GL
Sbjct: 45 EQKQLRQTMAKFLQEHLAPQAQEIDHFNEFKNLREFWKQLGNLGVLGITAPAQYGGSGLG 104
Query: 441 STMYARLCEIIS-LDSSIAVTLAAHQAIGLKGIIMTGSEEQKAKYLPKLASGEHMAAFCL 617
+ E IS + +++ ++ AH + L I+ G+E QK KYLPKL SGE++ A +
Sbjct: 105 YLEQVLVMEEISRVSAAVGLSYGAHSNLCLNQIVRNGNEAQKEKYLPKLISGEYIGALAM 164
Query: 618 TEPASGSDAASIRTRATLSEDKKHYVLNGSKVWITNGGLASVFTVFAKTEVVDSDGSVKD 797
+EP +GSD S++ +A D +Y+LNG+K WITNG A + ++AKT++ S
Sbjct: 165 SEPNAGSDVVSMKLKAEKKGD--YYILNGNKFWITNGPDADILIIYAKTDLAVVPAS--R 220
Query: 798 KITAFIVERDFGGVTSGKPEDKLGIRGSNTCEVHFEKHRVP 920
ITAFIVE++ G ++ K DKLG+RGSNTCE+ FE +VP
Sbjct: 221 GITAFIVEKNMPGFSTSKKLDKLGMRGSNTCELIFEDCKVP 261
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 38,850,698
Number of extensions: 1137935
Number of successful extensions: 4982
Number of sequences better than 1.0e-05: 21
Number of HSP's gapped: 4925
Number of HSP's successfully gapped: 22
Length of query: 311
Length of database: 18,874,504
Length adjustment: 103
Effective length of query: 208
Effective length of database: 15,440,896
Effective search space: 3211706368
Effective search space used: 3211706368
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003923
(934 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_054768.2| acyl-CoA dehydrogenase family member 9, mitocho... 465 e-131
Alignment gi|NP_001029031.1| very long-chain specific acyl-CoA dehydrogen... 276 3e-74
Alignment gi|NP_000009.1| very long-chain specific acyl-CoA dehydrogenase... 274 1e-73
Alignment gi|NP_002216.2| isovaleryl-CoA dehydrogenase, mitochondrial iso... 154 8e-38
Alignment gi|NP_001152980.1| isovaleryl-CoA dehydrogenase, mitochondrial ... 147 1e-35
Alignment gi|NP_000008.1| short-chain specific acyl-CoA dehydrogenase, mi... 135 5e-32
Alignment gi|NP_001600.1| short/branched chain specific acyl-CoA dehydrog... 133 2e-31
Alignment gi|NP_001120800.1| medium-chain specific acyl-CoA dehydrogenase... 130 1e-30
Alignment gi|NP_000007.1| medium-chain specific acyl-CoA dehydrogenase, m... 130 1e-30
Alignment gi|NP_039663.1| glutaryl-CoA dehydrogenase, mitochondrial isofo... 118 7e-27
>ref|NP_054768.2| acyl-CoA dehydrogenase family member 9, mitochondrial precursor
[Homo sapiens].
Length = 621
Score = 465 bits (1197), Expect = e-131
Identities = 229/260 (88%), Positives = 251/260 (96%)
Frame = +3
Query: 153 SRRLLRTSQPSRAFAKELFLGRIEKKEVFPFPEVSQDELNEINQFVGPVEKFFTEEVDSQ 332
+RRLLRTS P RAFAKELFLG+I+KKEVFPFPEVSQDELNEINQF+GPVEKFFTEEVDS+
Sbjct: 26 NRRLLRTSPPVRAFAKELFLGKIKKKEVFPFPEVSQDELNEINQFLGPVEKFFTEEVDSR 85
Query: 333 KIDREGKIPNETLEKLKSLGLFGMQVPEEYGGLGLSSTMYARLCEIISLDSSIAVTLAAH 512
KID+EGKIP+ETLEKLKSLGLFG+QVPEEYGGLG S+TMY+RL EIIS+D SI VTLAAH
Sbjct: 86 KIDQEGKIPDETLEKLKSLGLFGLQVPEEYGGLGFSNTMYSRLGEIISMDGSITVTLAAH 145
Query: 513 QAIGLKGIIMTGSEEQKAKYLPKLASGEHMAAFCLTEPASGSDAASIRTRATLSEDKKHY 692
QAIGLKGII+ G+EEQKAKYLPKLASGEH+AAFCLTEPASGSDAASIR+RATLSEDKKHY
Sbjct: 146 QAIGLKGIILAGTEEQKAKYLPKLASGEHIAAFCLTEPASGSDAASIRSRATLSEDKKHY 205
Query: 693 VLNGSKVWITNGGLASVFTVFAKTEVVDSDGSVKDKITAFIVERDFGGVTSGKPEDKLGI 872
+LNGSKVWITNGGLA++FTVFAKTEVVDSDGSVKDKITAFIVERDFGGVT+GKPEDKLGI
Sbjct: 206 ILNGSKVWITNGGLANIFTVFAKTEVVDSDGSVKDKITAFIVERDFGGVTNGKPEDKLGI 265
Query: 873 RGSNTCEVHFEKHRVPVENV 932
RGSNTCEVHFE ++PVEN+
Sbjct: 266 RGSNTCEVHFENTKIPVENI 285
>ref|NP_001029031.1| very long-chain specific acyl-CoA dehydrogenase, mitochondrial
isoform 2 precursor [Homo sapiens].
Length = 633
Score = 276 bits (705), Expect = 3e-74
Identities = 143/256 (55%), Positives = 184/256 (71%), Gaps = 3/256 (1%)
Frame = +3
Query: 174 SQPSRAFAKELFLGRIEKKEVFPFPEVSQDELNE-INQFVGPVEKFFTEEVDSQKIDREG 350
+Q S++FA +F G++ +VFP+P V +E + + + V PV +FF E D K D
Sbjct: 45 AQESKSFAVGMFKGQLTTDQVFPYPSVLNEEQTQFLKELVEPVSRFFEEVNDPAKNDALE 104
Query: 351 KIPNETLEKLKSLGLFGMQVPEEYGGLGLSSTMYARLCEIISL-DSSIAVTLAAHQAIGL 527
+ T + LK LG FG+QVP E GG+GL +T YARL EI+ + D + +TL AHQ+IG
Sbjct: 105 MVEETTWQGLKELGAFGLQVPSELGGVGLCNTQYARLVEIVGMHDLGVGITLGAHQSIGF 164
Query: 528 KGIIMTGSEEQKAKYLPKLASGEHMAAFCLTEPASGSDAASIRTRATLSEDKKHYVLNGS 707
KGI++ G++ QK KYLPKLASGE +AAFCLTEP+SGSDAASIRT A S K+Y LNGS
Sbjct: 165 KGILLFGTKAQKEKYLPKLASGETVAAFCLTEPSSGSDAASIRTSAVPSPCGKYYTLNGS 224
Query: 708 KVWITNGGLASVFTVFAKTEVVD-SDGSVKDKITAFIVERDFGGVTSGKPEDKLGIRGSN 884
K+WI+NGGLA +FTVFAKT V D + G+VK+KITAF+VER FGG+T G PE K+GI+ SN
Sbjct: 225 KLWISNGGLADIFTVFAKTPVTDPATGAVKEKITAFVVERGFGGITHGPPEKKMGIKASN 284
Query: 885 TCEVHFEKHRVPVENV 932
T EV F+ RVP ENV
Sbjct: 285 TAEVFFDGVRVPSENV 300
>ref|NP_000009.1| very long-chain specific acyl-CoA dehydrogenase, mitochondrial
isoform 1 precursor [Homo sapiens].
Length = 655
Score = 274 bits (700), Expect = 1e-73
Identities = 142/253 (56%), Positives = 182/253 (71%), Gaps = 3/253 (1%)
Frame = +3
Query: 183 SRAFAKELFLGRIEKKEVFPFPEVSQDELNE-INQFVGPVEKFFTEEVDSQKIDREGKIP 359
S++FA +F G++ +VFP+P V +E + + + V PV +FF E D K D +
Sbjct: 70 SKSFAVGMFKGQLTTDQVFPYPSVLNEEQTQFLKELVEPVSRFFEEVNDPAKNDALEMVE 129
Query: 360 NETLEKLKSLGLFGMQVPEEYGGLGLSSTMYARLCEIISL-DSSIAVTLAAHQAIGLKGI 536
T + LK LG FG+QVP E GG+GL +T YARL EI+ + D + +TL AHQ+IG KGI
Sbjct: 130 ETTWQGLKELGAFGLQVPSELGGVGLCNTQYARLVEIVGMHDLGVGITLGAHQSIGFKGI 189
Query: 537 IMTGSEEQKAKYLPKLASGEHMAAFCLTEPASGSDAASIRTRATLSEDKKHYVLNGSKVW 716
++ G++ QK KYLPKLASGE +AAFCLTEP+SGSDAASIRT A S K+Y LNGSK+W
Sbjct: 190 LLFGTKAQKEKYLPKLASGETVAAFCLTEPSSGSDAASIRTSAVPSPCGKYYTLNGSKLW 249
Query: 717 ITNGGLASVFTVFAKTEVVD-SDGSVKDKITAFIVERDFGGVTSGKPEDKLGIRGSNTCE 893
I+NGGLA +FTVFAKT V D + G+VK+KITAF+VER FGG+T G PE K+GI+ SNT E
Sbjct: 250 ISNGGLADIFTVFAKTPVTDPATGAVKEKITAFVVERGFGGITHGPPEKKMGIKASNTAE 309
Query: 894 VHFEKHRVPVENV 932
V F+ RVP ENV
Sbjct: 310 VFFDGVRVPSENV 322
>ref|NP_002216.2| isovaleryl-CoA dehydrogenase, mitochondrial isoform 1 precursor
[Homo sapiens].
Length = 426
Score = 154 bits (390), Expect = 8e-38
Identities = 90/225 (40%), Positives = 134/225 (59%), Gaps = 5/225 (2%)
Frame = +3
Query: 273 EINQFVGPVEKFFTEEV--DSQKIDREGKIPN--ETLEKLKSLGLFGMQVPEEYGGLGLS 440
E Q + KF E + +Q+IDR + N E ++L +LG+ G+ P +YGG GL
Sbjct: 48 EQRQLRQTMAKFLQEHLAPKAQEIDRSNEFKNLREFWKQLGNLGVLGITAPVQYGGSGLG 107
Query: 441 STMYARLCEIISLDS-SIAVTLAAHQAIGLKGIIMTGSEEQKAKYLPKLASGEHMAAFCL 617
+ + E IS S ++ ++ AH + + ++ G+E QK KYLPKL SGE++ A +
Sbjct: 108 YLEHVLVMEEISRASGAVGLSYGAHSNLCINQLVRNGNEAQKEKYLPKLISGEYIGALAM 167
Query: 618 TEPASGSDAASIRTRATLSEDKKHYVLNGSKVWITNGGLASVFTVFAKTEVVDSDGSVKD 797
+EP +GSD S++ +A + HY+LNG+K WITNG A V V+AKT++ S
Sbjct: 168 SEPNAGSDVVSMKLKA--EKKGNHYILNGNKFWITNGPDADVLIVYAKTDLAAVPAS--R 223
Query: 798 KITAFIVERDFGGVTSGKPEDKLGIRGSNTCEVHFEKHRVPVENV 932
ITAFIVE+ G ++ K DKLG+RGSNTCE+ FE ++P N+
Sbjct: 224 GITAFIVEKGMPGFSTSKKLDKLGMRGSNTCELIFEDCKIPAANI 268
>ref|NP_001152980.1| isovaleryl-CoA dehydrogenase, mitochondrial isoform 2 precursor
[Homo sapiens].
Length = 396
Score = 147 bits (372), Expect = 1e-35
Identities = 80/191 (41%), Positives = 119/191 (62%), Gaps = 1/191 (0%)
Frame = +3
Query: 363 ETLEKLKSLGLFGMQVPEEYGGLGLSSTMYARLCEIISLDS-SIAVTLAAHQAIGLKGII 539
E ++L +LG+ G+ P +YGG GL + + E IS S ++ ++ AH + + ++
Sbjct: 52 EFWKQLGNLGVLGITAPVQYGGSGLGYLEHVLVMEEISRASGAVGLSYGAHSNLCINQLV 111
Query: 540 MTGSEEQKAKYLPKLASGEHMAAFCLTEPASGSDAASIRTRATLSEDKKHYVLNGSKVWI 719
G+E QK KYLPKL SGE++ A ++EP +GSD S++ +A + HY+LNG+K WI
Sbjct: 112 RNGNEAQKEKYLPKLISGEYIGALAMSEPNAGSDVVSMKLKA--EKKGNHYILNGNKFWI 169
Query: 720 TNGGLASVFTVFAKTEVVDSDGSVKDKITAFIVERDFGGVTSGKPEDKLGIRGSNTCEVH 899
TNG A V V+AKT++ S ITAFIVE+ G ++ K DKLG+RGSNTCE+
Sbjct: 170 TNGPDADVLIVYAKTDLAAVPAS--RGITAFIVEKGMPGFSTSKKLDKLGMRGSNTCELI 227
Query: 900 FEKHRVPVENV 932
FE ++P N+
Sbjct: 228 FEDCKIPAANI 238
>ref|NP_000008.1| short-chain specific acyl-CoA dehydrogenase, mitochondrial
precursor [Homo sapiens].
Length = 412
Score = 135 bits (340), Expect = 5e-32
Identities = 88/228 (38%), Positives = 129/228 (56%), Gaps = 5/228 (2%)
Frame = +3
Query: 264 ELNEINQFVGPVEKFFTEEV---DSQKIDREGKIPNETLEKLKSLGLFGMQVPEEYGGLG 434
EL E +Q + + F E+ + ++D+E P ++K+ LGL M VPEE GG G
Sbjct: 33 ELPETHQMLLQTCRDFAEKELFPIAAQVDKEHLFPAAQVKKMGGLGLLAMDVPEELGGAG 92
Query: 435 LSSTMYARLCEIISLD-SSIAVTLAAHQAIGLKGIIMTGSEEQKAKYLPKLASGEHMAAF 611
L YA E IS +S V ++ + ++ L I+ GS+EQK ++ SG+ + F
Sbjct: 93 LDYLAYAIAMEEISRGCASTGVIMSVNNSLYLGPILKFGSKEQKQAWVTPFTSGDKIGCF 152
Query: 612 CLTEPASGSDAASIRTRATLSEDKKHYVLNGSKVWITNGGLASVFTVFAKTEVVDSDGSV 791
L+EP +GSDA + T A D +VLNG+K WITN AS VFA T D ++
Sbjct: 153 ALSEPGNGSDAGAASTTARAEGDS--WVLNGTKAWITNAWEASAAVVFAST-----DRAL 205
Query: 792 KDK-ITAFIVERDFGGVTSGKPEDKLGIRGSNTCEVHFEKHRVPVENV 932
++K I+AF+V G+T GK EDKLGIRGS+T + FE R+P +++
Sbjct: 206 QNKGISAFLVPMPTPGLTLGKKEDKLGIRGSSTANLIFEDCRIPKDSI 253
>ref|NP_001600.1| short/branched chain specific acyl-CoA dehydrogenase, mitochondrial
precursor [Homo sapiens].
Length = 432
Score = 133 bits (335), Expect = 2e-31
Identities = 86/216 (39%), Positives = 128/216 (59%), Gaps = 4/216 (1%)
Frame = +3
Query: 297 VEKFFTEEVDS--QKIDREGKIPNETLEKLKSLGLFGMQVPEEYGGLGLS--STMYARLC 464
V+KF E++ +D K+ ++ L GL G++V EYGG G S ST+ +
Sbjct: 68 VKKFAQEQIAPLVSTMDENSKMEKSVIQGLFQQGLMGIEVDPEYGGTGASFLSTVLV-IE 126
Query: 465 EIISLDSSIAVTLAAHQAIGLKGIIMTGSEEQKAKYLPKLASGEHMAAFCLTEPASGSDA 644
E+ +D+S+AV + I G+EEQKA YLP+L + E + +FCL+E +GSD+
Sbjct: 127 ELAKVDASVAVFCEIQNTLINTLIRKHGTEEQKATYLPQLTT-EKVGSFCLSEAGAGSDS 185
Query: 645 ASIRTRATLSEDKKHYVLNGSKVWITNGGLASVFTVFAKTEVVDSDGSVKDKITAFIVER 824
+++TRA D +YVLNGSK+WI++ A +F V A VD K IT+F+V+R
Sbjct: 186 FALKTRADKEGD--YYVLNGSKMWISSAEHAGLFLVMAN---VDPTIGYKG-ITSFLVDR 239
Query: 825 DFGGVTSGKPEDKLGIRGSNTCEVHFEKHRVPVENV 932
D G+ GKPE+KLG+R S+TC + FE +VP N+
Sbjct: 240 DTPGLHIGKPENKLGLRASSTCPLTFENVKVPEANI 275
>ref|NP_001120800.1| medium-chain specific acyl-CoA dehydrogenase, mitochondrial isoform
b precursor [Homo sapiens].
Length = 425
Score = 130 bits (328), Expect = 1e-30
Identities = 76/219 (34%), Positives = 119/219 (54%), Gaps = 2/219 (0%)
Frame = +3
Query: 282 QFVGPVEKFFTEEVD--SQKIDREGKIPNETLEKLKSLGLFGMQVPEEYGGLGLSSTMYA 455
+F KF EE+ + + D+ G+ P + + LGL +PE GGLGL +
Sbjct: 51 EFQATARKFAREEIIPVAAEYDKTGEYPVPLIRRAWELGLMNTHIPENCGGLGLGTFDAC 110
Query: 456 RLCEIISLDSSIAVTLAAHQAIGLKGIIMTGSEEQKAKYLPKLASGEHMAAFCLTEPASG 635
+ E ++ + T ++G II+ G+++QK KYL ++ M A+C+TEP +G
Sbjct: 111 LISEELAYGCTGVQTAIEGNSLGQMPIIIAGNDQQKKKYLGRMTEEPLMCAYCVTEPGAG 170
Query: 636 SDAASIRTRATLSEDKKHYVLNGSKVWITNGGLASVFTVFAKTEVVDSDGSVKDKITAFI 815
SD A I+T+A D+ Y++NG K+WITNGG A+ + + A+++ D T FI
Sbjct: 171 SDVAGIKTKAEKKGDE--YIINGQKMWITNGGKANWYFLLARSD-PDPKAPANKAFTGFI 227
Query: 816 VERDFGGVTSGKPEDKLGIRGSNTCEVHFEKHRVPVENV 932
VE D G+ G+ E +G R S+T + FE +VP ENV
Sbjct: 228 VEADTPGIQIGRKELNMGQRCSDTRGIVFEDVKVPKENV 266
>ref|NP_000007.1| medium-chain specific acyl-CoA dehydrogenase, mitochondrial isoform
a precursor [Homo sapiens].
Length = 421
Score = 130 bits (328), Expect = 1e-30
Identities = 76/219 (34%), Positives = 119/219 (54%), Gaps = 2/219 (0%)
Frame = +3
Query: 282 QFVGPVEKFFTEEVD--SQKIDREGKIPNETLEKLKSLGLFGMQVPEEYGGLGLSSTMYA 455
+F KF EE+ + + D+ G+ P + + LGL +PE GGLGL +
Sbjct: 47 EFQATARKFAREEIIPVAAEYDKTGEYPVPLIRRAWELGLMNTHIPENCGGLGLGTFDAC 106
Query: 456 RLCEIISLDSSIAVTLAAHQAIGLKGIIMTGSEEQKAKYLPKLASGEHMAAFCLTEPASG 635
+ E ++ + T ++G II+ G+++QK KYL ++ M A+C+TEP +G
Sbjct: 107 LISEELAYGCTGVQTAIEGNSLGQMPIIIAGNDQQKKKYLGRMTEEPLMCAYCVTEPGAG 166
Query: 636 SDAASIRTRATLSEDKKHYVLNGSKVWITNGGLASVFTVFAKTEVVDSDGSVKDKITAFI 815
SD A I+T+A D+ Y++NG K+WITNGG A+ + + A+++ D T FI
Sbjct: 167 SDVAGIKTKAEKKGDE--YIINGQKMWITNGGKANWYFLLARSD-PDPKAPANKAFTGFI 223
Query: 816 VERDFGGVTSGKPEDKLGIRGSNTCEVHFEKHRVPVENV 932
VE D G+ G+ E +G R S+T + FE +VP ENV
Sbjct: 224 VEADTPGIQIGRKELNMGQRCSDTRGIVFEDVKVPKENV 262
>ref|NP_039663.1| glutaryl-CoA dehydrogenase, mitochondrial isoform b precursor [Homo
sapiens].
Length = 428
Score = 118 bits (296), Expect = 7e-27
Identities = 70/191 (36%), Positives = 108/191 (56%), Gaps = 1/191 (0%)
Frame = +3
Query: 363 ETLEKLKSLGLFGMQVPEEYGGLGLSSTMYARLC-EIISLDSSIAVTLAAHQAIGLKGII 539
E + ++ LG+ G + + YG G+SS Y L E+ +DS ++ ++ + I
Sbjct: 95 EIISEMGELGVLGPTI-KGYGCAGVSSVAYGLLARELERVDSGYRSAMSVQSSLVMHPIY 153
Query: 540 MTGSEEQKAKYLPKLASGEHMAAFCLTEPASGSDAASIRTRATLSEDKKHYVLNGSKVWI 719
GSEEQ+ KYLP+LA GE + F LTEP SGSD +S+ TRA + K Y LNG+K WI
Sbjct: 154 AYGSEEQRQKYLPQLAKGELLGCFGLTEPNSGSDPSSMETRAHYNSSNKSYTLNGTKTWI 213
Query: 720 TNGGLASVFTVFAKTEVVDSDGSVKDKITAFIVERDFGGVTSGKPEDKLGIRGSNTCEVH 899
TN +A +F V+A+ E DG ++ F++E+ G+++ + + K +R S T +
Sbjct: 214 TNSPMADLFVVWARCE----DGCIR----GFLLEKGMRGLSAPRIQGKFSLRASATGMII 265
Query: 900 FEKHRVPVENV 932
+ VP ENV
Sbjct: 266 MDGVEVPEENV 276
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 38,060,759
Number of extensions: 1108255
Number of successful extensions: 4481
Number of sequences better than 1.0e-05: 19
Number of HSP's gapped: 4430
Number of HSP's successfully gapped: 19
Length of query: 311
Length of database: 18,297,164
Length adjustment: 102
Effective length of query: 209
Effective length of database: 14,934,836
Effective search space: 3121380724
Effective search space used: 3121380724
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003923
(934 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_766266.3| acyl-CoA dehydrogenase family member 9, mitocho... 438 e-123
Alignment gi|NP_059062.1| very long-chain specific acyl-CoA dehydrogenase... 278 3e-75
Alignment gi|NP_062800.1| isovaleryl-CoA dehydrogenase, mitochondrial pre... 157 8e-39
Alignment gi|NP_031408.1| medium-chain specific acyl-CoA dehydrogenase, m... 133 2e-31
Alignment gi|NP_031409.2| short-chain specific acyl-CoA dehydrogenase, mi... 132 5e-31
Alignment gi|NP_080102.1| short/branched chain specific acyl-CoA dehydrog... 127 1e-29
Alignment gi|NP_031407.2| long-chain specific acyl-CoA dehydrogenase, mit... 108 8e-24
Alignment gi|NP_080138.2| isobutyryl-CoA dehydrogenase, mitochondrial pre... 107 2e-23
Alignment gi|NP_001038209.1| glutaryl-CoA dehydrogenase, mitochondrial pr... 106 2e-23
Alignment gi|NP_032123.2| glutaryl-CoA dehydrogenase, mitochondrial precu... 106 2e-23
>ref|NP_766266.3| acyl-CoA dehydrogenase family member 9, mitochondrial precursor
[Mus musculus].
Length = 625
Score = 438 bits (1127), Expect = e-123
Identities = 220/259 (84%), Positives = 243/259 (93%)
Frame = +3
Query: 156 RRLLRTSQPSRAFAKELFLGRIEKKEVFPFPEVSQDELNEINQFVGPVEKFFTEEVDSQK 335
RR L TS S +FAKELFLG IE+K VFPFPEVSQ EL+EINQFVGP+EKFFTEEVDS+K
Sbjct: 31 RRPLHTSLQSCSFAKELFLGNIEQKGVFPFPEVSQHELSEINQFVGPLEKFFTEEVDSRK 90
Query: 336 IDREGKIPNETLEKLKSLGLFGMQVPEEYGGLGLSSTMYARLCEIISLDSSIAVTLAAHQ 515
ID+EGKIP +TLEKLKSLGLFG+QVPEEYGGLGLS+TMYARL EIISLD+SI VTLAAHQ
Sbjct: 91 IDQEGKIPVDTLEKLKSLGLFGIQVPEEYGGLGLSNTMYARLGEIISLDASITVTLAAHQ 150
Query: 516 AIGLKGIIMTGSEEQKAKYLPKLASGEHMAAFCLTEPASGSDAASIRTRATLSEDKKHYV 695
AIGLKGII+ G+EEQKAKYLPKL+SGEH+AAFCLTEPASGSDAASI+TRATLSEDKK+++
Sbjct: 151 AIGLKGIILVGNEEQKAKYLPKLSSGEHIAAFCLTEPASGSDAASIQTRATLSEDKKYFI 210
Query: 696 LNGSKVWITNGGLASVFTVFAKTEVVDSDGSVKDKITAFIVERDFGGVTSGKPEDKLGIR 875
LNGSKVWITNGGLA++FTVFAKTEVVDSDGS DK+TAFIVERDFGG+T+GKPEDKLGIR
Sbjct: 211 LNGSKVWITNGGLANIFTVFAKTEVVDSDGSKTDKMTAFIVERDFGGITNGKPEDKLGIR 270
Query: 876 GSNTCEVHFEKHRVPVENV 932
GSNTCEVHFE RVPVENV
Sbjct: 271 GSNTCEVHFENTRVPVENV 289
>ref|NP_059062.1| very long-chain specific acyl-CoA dehydrogenase, mitochondrial
precursor [Mus musculus].
Length = 656
Score = 278 bits (712), Expect = 3e-75
Identities = 141/253 (55%), Positives = 190/253 (75%), Gaps = 3/253 (1%)
Frame = +3
Query: 183 SRAFAKELFLGRIEKKEVFPFPEV-SQDELNEINQFVGPVEKFFTEEVDSQKIDREGKIP 359
S++FA +F G++ +VFP+P V S+++ + + VGPV +FF E D K D K+
Sbjct: 71 SKSFAVGMFKGQLTIDQVFPYPSVLSEEQAQFLKELVGPVARFFEEVNDPAKNDALEKVE 130
Query: 360 NETLEKLKSLGLFGMQVPEEYGGLGLSSTMYARLCEIISL-DSSIAVTLAAHQAIGLKGI 536
++TL+ LK LG FG+QVP E GGLGLS+T YARL EI+ + D ++VTL AHQ+IG KGI
Sbjct: 131 DDTLQGLKELGAFGLQVPSELGGLGLSNTQYARLAEIVGMHDLGVSVTLGAHQSIGFKGI 190
Query: 537 IMTGSEEQKAKYLPKLASGEHMAAFCLTEPASGSDAASIRTRATLSEDKKHYVLNGSKVW 716
++ G++ Q+ KYLP++ASG+ +AAFCLTEP+SGSD ASIR+ A S K+Y LNGSK+W
Sbjct: 191 LLYGTKAQREKYLPRVASGQALAAFCLTEPSSGSDVASIRSSAIPSPCGKYYTLNGSKIW 250
Query: 717 ITNGGLASVFTVFAKTEVVD-SDGSVKDKITAFIVERDFGGVTSGKPEDKLGIRGSNTCE 893
I+NGGLA +FTVFAKT + D + G+VK+KITAF+VER FGGVT G PE K+GI+ SNT E
Sbjct: 251 ISNGGLADIFTVFAKTPIKDAATGAVKEKITAFVVERSFGGVTHGLPEKKMGIKASNTSE 310
Query: 894 VHFEKHRVPVENV 932
V+F+ +VP ENV
Sbjct: 311 VYFDGVKVPSENV 323
>ref|NP_062800.1| isovaleryl-CoA dehydrogenase, mitochondrial precursor [Mus
musculus].
Length = 424
Score = 157 bits (398), Expect = 8e-39
Identities = 96/233 (41%), Positives = 137/233 (58%), Gaps = 9/233 (3%)
Frame = +3
Query: 261 DELNEIN----QFVGPVEKFFTEEV--DSQKIDREGKIPN--ETLEKLKSLGLFGMQVPE 416
D++N +N Q + KF E + +Q+ID+ N E ++L SLG+ G+ P
Sbjct: 38 DDINGLNEEQKQLRHTISKFLQENLAPKAQEIDQTNDFKNLREFWKQLGSLGVLGITAPV 97
Query: 417 EYGGLGLSSTMYARLCEIISLDS-SIAVTLAAHQAIGLKGIIMTGSEEQKAKYLPKLASG 593
+YGG GL + + E IS S ++ ++ AH + + I+ G+E QK KYLPKL SG
Sbjct: 98 QYGGSGLGYLEHVLVMEEISRASGAVGLSYGAHSNLCVNQIVRNGNEAQKEKYLPKLISG 157
Query: 594 EHMAAFCLTEPASGSDAASIRTRATLSEDKKHYVLNGSKVWITNGGLASVFTVFAKTEVV 773
E + A ++EP +GSD S++ +A D HYVLNG+K WITNG A + V+AKT++
Sbjct: 158 EFIGALAMSEPNAGSDVVSMKLKAEKKGD--HYVLNGNKFWITNGPDADILVVYAKTDLT 215
Query: 774 DSDGSVKDKITAFIVERDFGGVTSGKPEDKLGIRGSNTCEVHFEKHRVPVENV 932
S ITAFIVE+ G ++ K DKLG+RGSNTCE+ FE +VP NV
Sbjct: 216 AVPAS--RGITAFIVEKGMPGFSTSKKLDKLGMRGSNTCELVFEDCKVPAANV 266
>ref|NP_031408.1| medium-chain specific acyl-CoA dehydrogenase, mitochondrial
precursor [Mus musculus].
Length = 421
Score = 133 bits (335), Expect = 2e-31
Identities = 78/219 (35%), Positives = 121/219 (55%), Gaps = 2/219 (0%)
Frame = +3
Query: 282 QFVGPVEKFFTEEVD--SQKIDREGKIPNETLEKLKSLGLFGMQVPEEYGGLGLSSTMYA 455
+F KF EE+ + + D+ G+ P +++ LGL +PE GGLGL +
Sbjct: 47 EFQATARKFAREEIIPVAPEYDKSGEYPFPLIKRAWELGLINAHIPESCGGLGLGTFDAC 106
Query: 456 RLCEIISLDSSIAVTLAAHQAIGLKGIIMTGSEEQKAKYLPKLASGEHMAAFCLTEPASG 635
+ E ++ + T ++G +I+ G+++QK KYL ++ M A+C+TEP++G
Sbjct: 107 LITEELAYGCTGVQTAIEANSLGQMPVILAGNDQQKKKYLGRMTEQPMMCAYCVTEPSAG 166
Query: 636 SDAASIRTRATLSEDKKHYVLNGSKVWITNGGLASVFTVFAKTEVVDSDGSVKDKITAFI 815
SD A+I+T+A D+ YV+NG K+WITNGG A+ + + A++ D T FI
Sbjct: 167 SDVAAIKTKAEKKGDE--YVINGQKMWITNGGKANWYFLLARSN-PDPKVPASKAFTGFI 223
Query: 816 VERDFGGVTSGKPEDKLGIRGSNTCEVHFEKHRVPVENV 932
VE D G+ GK E +G R S+T + FE RVP ENV
Sbjct: 224 VEADTPGIHIGKKELNMGQRCSDTRGIAFEDVRVPKENV 262
>ref|NP_031409.2| short-chain specific acyl-CoA dehydrogenase, mitochondrial
precursor [Mus musculus].
Length = 412
Score = 132 bits (331), Expect = 5e-31
Identities = 87/228 (38%), Positives = 127/228 (55%), Gaps = 5/228 (2%)
Frame = +3
Query: 264 ELNEINQFVGPVEKFFTEEV---DSQKIDREGKIPNETLEKLKSLGLFGMQVPEEYGGLG 434
EL E +Q + + F E+ + ++DRE P ++K+ LGL M VPEE G G
Sbjct: 33 ELPETHQMLRQTCRDFAEKELVPIAAQLDREHLFPTAQVKKMGELGLLAMDVPEELSGAG 92
Query: 435 LSSTMYARLCEIISLD-SSIAVTLAAHQAIGLKGIIMTGSEEQKAKYLPKLASGEHMAAF 611
L Y+ E IS +S V ++ + ++ L I+ GS +QK +++ +G+ + F
Sbjct: 93 LDYLAYSIALEEISRACASTGVIMSVNNSLYLGPILKFGSAQQKQQWITPFTNGDKIGCF 152
Query: 612 CLTEPASGSDAASIRTRATLSEDKKHYVLNGSKVWITNGGLASVFTVFAKTEVVDSDGSV 791
L+EP +GSDA + T T E+ +VLNG+K WITN AS VFA T D S
Sbjct: 153 ALSEPGNGSDAGAAST--TAREEGDSWVLNGTKAWITNSWEASATVVFAST-----DRSR 205
Query: 792 KDK-ITAFIVERDFGGVTSGKPEDKLGIRGSNTCEVHFEKHRVPVENV 932
++K I+AF+V G+T GK EDKLGIR S+T + FE R+P EN+
Sbjct: 206 QNKGISAFLVPMPTPGLTLGKKEDKLGIRASSTANLIFEDCRIPKENL 253
>ref|NP_080102.1| short/branched chain specific acyl-CoA dehydrogenase, mitochondrial
[Mus musculus].
Length = 432
Score = 127 bits (319), Expect = 1e-29
Identities = 92/261 (35%), Positives = 137/261 (52%), Gaps = 3/261 (1%)
Frame = +3
Query: 159 RLLRTSQPSRAFAKELFLGRIEKKEVFPFPEVSQDELNEINQFVGPVEKFFTEEVDS--Q 332
R+L++SQP E + F + DE + Q V+KF E V
Sbjct: 31 RVLKSSQP------EALVSLTNNAVAFAPLQTLTDEEIMMKQ---TVKKFAQEHVAPLVS 81
Query: 333 KIDREGKIPNETLEKLKSLGLFGMQVPEEYGGLGLSSTMYARLCE-IISLDSSIAVTLAA 509
+D K+ ++ L GL G++V +YGG S + E + +D+S+A+
Sbjct: 82 SMDENSKMEKSVIQGLFQQGLMGIEVEAQYGGTEASFFCSVLVIEELAKVDASVALLCDI 141
Query: 510 HQAIGLKGIIMTGSEEQKAKYLPKLASGEHMAAFCLTEPASGSDAASIRTRATLSEDKKH 689
I SEEQKA YLPKL + E + +FCL+E +GSD+ +++TRA S + +
Sbjct: 142 QNTIINNLFRKHASEEQKATYLPKLVT-EKLGSFCLSEAGAGSDSFAMKTRADKSGN--Y 198
Query: 690 YVLNGSKVWITNGGLASVFTVFAKTEVVDSDGSVKDKITAFIVERDFGGVTSGKPEDKLG 869
YVLNGSK+WI++ A +F VFA VD + IT F+V+RD G GK E+K+G
Sbjct: 199 YVLNGSKMWISHAEHAELFLVFAN---VDPSSGYRG-ITCFLVDRDTEGFQIGKRENKMG 254
Query: 870 IRGSNTCEVHFEKHRVPVENV 932
IR S+TC++ FE +VP N+
Sbjct: 255 IRASSTCQLTFENVKVPETNI 275
>ref|NP_031407.2| long-chain specific acyl-CoA dehydrogenase, mitochondrial precursor
[Mus musculus].
Length = 430
Score = 108 bits (269), Expect = 8e-24
Identities = 72/219 (32%), Positives = 112/219 (51%), Gaps = 2/219 (0%)
Frame = +3
Query: 270 NEINQFVGPVEKFFTEEVDSQKIDRE--GKIPNETLEKLKSLGLFGMQVPEEYGGLGLSS 443
+E + F V KFF EEV + E G++ E EK GL G+ + E++GG+G
Sbjct: 55 SEHDIFRESVRKFFQEEVIPHHTEWEKAGEVSREVWEKAGKQGLLGINIAEKHGGIGGDL 114
Query: 444 TMYARLCEIISLDSSIAVTLAAHQAIGLKGIIMTGSEEQKAKYLPKLASGEHMAAFCLTE 623
A E + + + H I + I G++EQ K++P++ +G+ + A +TE
Sbjct: 115 LSTAVTWEEQAYSNCTGPGFSLHSDIVMPYIANYGTKEQIEKFIPQMTAGKCIGAIAMTE 174
Query: 624 PASGSDAASIRTRATLSEDKKHYVLNGSKVWITNGGLASVFTVFAKTEVVDSDGSVKDKI 803
P +GSD +RT A S ++LNGSKV+ITNG L+ + V A T S I
Sbjct: 175 PGAGSDLQGVRTNAKRS--GSDWILNGSKVFITNGWLSDLVIVVAVTN--REARSPAHGI 230
Query: 804 TAFIVERDFGGVTSGKPEDKLGIRGSNTCEVHFEKHRVP 920
+ F+VE G G+ K+G++ +T E+ FE R+P
Sbjct: 231 SLFLVENGMKGFIKGRKLHKMGMKAQDTAELFFEDVRLP 269
>ref|NP_080138.2| isobutyryl-CoA dehydrogenase, mitochondrial precursor [Mus
musculus].
Length = 413
Score = 107 bits (266), Expect = 2e-23
Identities = 68/197 (34%), Positives = 102/197 (51%)
Frame = +3
Query: 339 DREGKIPNETLEKLKSLGLFGMQVPEEYGGLGLSSTMYARLCEIISLDSSIAVTLAAHQA 518
D++ P + + K LG G+ V + GG GLS + + E ++ + +
Sbjct: 66 DQKELFPVDVMRKAAQLGFGGVYVRTDVGGSGLSRLDTSVIFEALATGCTSTTAYISIHN 125
Query: 519 IGLKGIIMTGSEEQKAKYLPKLASGEHMAAFCLTEPASGSDAASIRTRATLSEDKKHYVL 698
+ I G+EEQ+ K+ P L + E A++CLTEP SGSDAAS+ T A D HY+L
Sbjct: 126 MCAWMIDSFGNEEQRHKFCPPLCTMEKFASYCLTEPGSGSDAASLLTSAKQQGD--HYIL 183
Query: 699 NGSKVWITNGGLASVFTVFAKTEVVDSDGSVKDKITAFIVERDFGGVTSGKPEDKLGIRG 878
NGSK +I+ GG + ++ V +T + G I+ +VE+ G++ GK E K+G
Sbjct: 184 NGSKAFISGGGESDIYVVMCRTGESGAKG-----ISCIVVEKGTPGLSFGKKEKKVGWNS 238
Query: 879 SNTCEVHFEKHRVPVEN 929
T V FE VPV N
Sbjct: 239 QPTRAVIFEDCAVPVAN 255
>ref|NP_001038209.1| glutaryl-CoA dehydrogenase, mitochondrial precursor [Mus musculus].
Length = 438
Score = 106 bits (265), Expect = 2e-23
Identities = 71/233 (30%), Positives = 118/233 (50%), Gaps = 4/233 (1%)
Frame = +3
Query: 246 PEVSQDELNEINQFVGPVEKFFTEEVDSQKI---DREGKIPNETLEKLKSLGLFGMQVPE 416
P + +++L + + + + +E +I +R + + ++ LG+ G + +
Sbjct: 53 PLILEEQLTADEKLIRDTFRNYCQERLMSRILLANRNEVFHRDIVYEMGELGVLGPTI-K 111
Query: 417 EYGGLGLSSTMYARLC-EIISLDSSIAVTLAAHQAIGLKGIIMTGSEEQKAKYLPKLASG 593
YG G+SS Y L E+ +DS ++ ++ + I GSEEQ+ KYLP LA G
Sbjct: 112 GYGCAGVSSVAYGLLTRELERVDSGYRSMMSVQSSLVMHPIYTYGSEEQRQKYLPGLAKG 171
Query: 594 EHMAAFCLTEPASGSDAASIRTRATLSEDKKHYVLNGSKVWITNGGLASVFTVFAKTEVV 773
E + F LTEP GSD + TRA + + Y L+G+K WITN +A +F V+A+ E
Sbjct: 172 ELLGCFGLTEPNHGSDPGGMETRARHNPSNQSYTLSGTKTWITNSPVADLFIVWARCE-- 229
Query: 774 DSDGSVKDKITAFIVERDFGGVTSGKPEDKLGIRGSNTCEVHFEKHRVPVENV 932
+ I FI+E+ G+++ + E K +R S T + + VP ENV
Sbjct: 230 ------DNCIRGFILEKGMRGLSAPRIEGKFSLRASATGMIIMDSVEVPEENV 276
>ref|NP_032123.2| glutaryl-CoA dehydrogenase, mitochondrial precursor [Mus musculus].
Length = 438
Score = 106 bits (265), Expect = 2e-23
Identities = 71/233 (30%), Positives = 118/233 (50%), Gaps = 4/233 (1%)
Frame = +3
Query: 246 PEVSQDELNEINQFVGPVEKFFTEEVDSQKI---DREGKIPNETLEKLKSLGLFGMQVPE 416
P + +++L + + + + +E +I +R + + ++ LG+ G + +
Sbjct: 53 PLILEEQLTADEKLIRDTFRNYCQERLMSRILLANRNEVFHRDIVYEMGELGVLGPTI-K 111
Query: 417 EYGGLGLSSTMYARLC-EIISLDSSIAVTLAAHQAIGLKGIIMTGSEEQKAKYLPKLASG 593
YG G+SS Y L E+ +DS ++ ++ + I GSEEQ+ KYLP LA G
Sbjct: 112 GYGCAGVSSVAYGLLTRELERVDSGYRSMMSVQSSLVMHPIYTYGSEEQRQKYLPGLAKG 171
Query: 594 EHMAAFCLTEPASGSDAASIRTRATLSEDKKHYVLNGSKVWITNGGLASVFTVFAKTEVV 773
E + F LTEP GSD + TRA + + Y L+G+K WITN +A +F V+A+ E
Sbjct: 172 ELLGCFGLTEPNHGSDPGGMETRARHNPSNQSYTLSGTKTWITNSPVADLFIVWARCE-- 229
Query: 774 DSDGSVKDKITAFIVERDFGGVTSGKPEDKLGIRGSNTCEVHFEKHRVPVENV 932
+ I FI+E+ G+++ + E K +R S T + + VP ENV
Sbjct: 230 ------DNCIRGFILEKGMRGLSAPRIEGKFSLRASATGMIIMDSVEVPEENV 276
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 32,107,127
Number of extensions: 919026
Number of successful extensions: 3697
Number of sequences better than 1.0e-05: 14
Number of HSP's gapped: 3654
Number of HSP's successfully gapped: 14
Length of query: 311
Length of database: 15,617,559
Length adjustment: 101
Effective length of query: 210
Effective length of database: 12,583,923
Effective search space: 2642623830
Effective search space used: 2642623830
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003923
(934 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_003358302.1| PREDICTED: very long-chain specific acyl-CoA... 281 5e-76
Alignment gi|XP_003354989.1| PREDICTED: very long-chain specific acyl-CoA... 281 5e-76
Alignment gi|XP_003131991.2| PREDICTED: very long-chain specific acyl-CoA... 281 5e-76
Alignment gi|XP_003358588.1| PREDICTED: acyl-CoA dehydrogenase family mem... 196 1e-50
Alignment gi|NP_001161107.1| isovaleryl-CoA dehydrogenase, mitochondrial ... 152 3e-37
Alignment gi|XP_003121646.2| PREDICTED: isovaleryl-CoA dehydrogenase, mit... 138 4e-33
Alignment gi|XP_001926332.2| PREDICTED: short/branched chain specific acy... 136 2e-32
Alignment gi|NP_999063.1| short-chain specific acyl-CoA dehydrogenase, mi... 134 7e-32
Alignment gi|NP_999204.1| medium-chain specific acyl-CoA dehydrogenase, m... 130 8e-31
Alignment gi|XP_003123377.1| PREDICTED: glutaryl-CoA dehydrogenase, mitoc... 114 6e-26
>ref|XP_003358302.1| PREDICTED: very long-chain specific acyl-CoA dehydrogenase,
mitochondrial-like [Sus scrofa].
Length = 428
Score = 281 bits (718), Expect = 5e-76
Identities = 144/263 (54%), Positives = 190/263 (72%), Gaps = 3/263 (1%)
Frame = +3
Query: 153 SRRLLRTSQPSRAFAKELFLGRIEKKEVFPFPEV-SQDELNEINQFVGPVEKFFTEEVDS 329
S R R S++FA +F G++ +VFP+P V ++D+ + + VGPV +FF E D
Sbjct: 57 STREKRIQTESKSFAVGMFKGQLTTDQVFPYPSVLNEDQTQVLQELVGPVSRFFEEVNDP 116
Query: 330 QKIDREGKIPNETLEKLKSLGLFGMQVPEEYGGLGLSSTMYARLCEIISL-DSSIAVTLA 506
K D ++ T++ LK LG FG+QVP E GG+GL +T YARL EI+ + D + + L
Sbjct: 117 AKNDMLERVEETTMQGLKELGAFGLQVPSELGGVGLCNTQYARLVEIVGMHDLGVGIVLG 176
Query: 507 AHQAIGLKGIIMTGSEEQKAKYLPKLASGEHMAAFCLTEPASGSDAASIRTRATLSEDKK 686
AHQ+IG KGI++ G++ QK KYLPK+ASGE MAAFCLTEP+SGSDAASIR+ A S K
Sbjct: 177 AHQSIGFKGILLFGTKAQKEKYLPKVASGEVMAAFCLTEPSSGSDAASIRSSAVPSPCGK 236
Query: 687 HYVLNGSKVWITNGGLASVFTVFAKTEVVD-SDGSVKDKITAFIVERDFGGVTSGKPEDK 863
+Y LNGSK+WI+NGGLA +FTVFAKT V D + G+VK+KITAF+VER FGGVT G PE K
Sbjct: 237 YYTLNGSKIWISNGGLADLFTVFAKTPVTDPATGAVKEKITAFLVERGFGGVTHGPPEKK 296
Query: 864 LGIRGSNTCEVHFEKHRVPVENV 932
+GI+ SNT EV+F++ +VP ENV
Sbjct: 297 MGIKASNTAEVYFDEVQVPTENV 319
>ref|XP_003354989.1| PREDICTED: very long-chain specific acyl-CoA dehydrogenase,
mitochondrial-like isoform 2 [Sus scrofa].
Length = 633
Score = 281 bits (718), Expect = 5e-76
Identities = 142/256 (55%), Positives = 189/256 (73%), Gaps = 3/256 (1%)
Frame = +3
Query: 174 SQPSRAFAKELFLGRIEKKEVFPFPEV-SQDELNEINQFVGPVEKFFTEEVDSQKIDREG 350
+Q S++FA +F G++ +VFP+P V ++D+ + + VGPV +FF E D K D
Sbjct: 45 AQESKSFAVGMFKGQLTTDQVFPYPSVLNEDQTQVLQELVGPVSRFFEEVNDPAKNDMLE 104
Query: 351 KIPNETLEKLKSLGLFGMQVPEEYGGLGLSSTMYARLCEIISL-DSSIAVTLAAHQAIGL 527
++ T++ LK LG FG+QVP E GG+GL +T YARL EI+ + D + + L AHQ+IG
Sbjct: 105 RVEETTMQGLKELGAFGLQVPSELGGVGLCNTQYARLVEIVGMHDLGVGIVLGAHQSIGF 164
Query: 528 KGIIMTGSEEQKAKYLPKLASGEHMAAFCLTEPASGSDAASIRTRATLSEDKKHYVLNGS 707
KGI++ G++ QK KYLPK+ASGE MAAFCLTEP+SGSDAASIR+ A S K+Y LNGS
Sbjct: 165 KGILLFGTKAQKEKYLPKVASGEVMAAFCLTEPSSGSDAASIRSSAVPSPCGKYYTLNGS 224
Query: 708 KVWITNGGLASVFTVFAKTEVVD-SDGSVKDKITAFIVERDFGGVTSGKPEDKLGIRGSN 884
K+WI+NGGLA +FTVFAKT V D + G+VK+KITAF+VER FGGVT G PE K+GI+ SN
Sbjct: 225 KIWISNGGLADLFTVFAKTPVTDPATGAVKEKITAFLVERGFGGVTHGPPEKKMGIKASN 284
Query: 885 TCEVHFEKHRVPVENV 932
T EV+F++ +VP ENV
Sbjct: 285 TAEVYFDEVQVPTENV 300
>ref|XP_003131991.2| PREDICTED: very long-chain specific acyl-CoA dehydrogenase,
mitochondrial-like isoform 1 [Sus scrofa].
Length = 652
Score = 281 bits (718), Expect = 5e-76
Identities = 144/263 (54%), Positives = 190/263 (72%), Gaps = 3/263 (1%)
Frame = +3
Query: 153 SRRLLRTSQPSRAFAKELFLGRIEKKEVFPFPEV-SQDELNEINQFVGPVEKFFTEEVDS 329
S R R S++FA +F G++ +VFP+P V ++D+ + + VGPV +FF E D
Sbjct: 57 STREKRIQTESKSFAVGMFKGQLTTDQVFPYPSVLNEDQTQVLQELVGPVSRFFEEVNDP 116
Query: 330 QKIDREGKIPNETLEKLKSLGLFGMQVPEEYGGLGLSSTMYARLCEIISL-DSSIAVTLA 506
K D ++ T++ LK LG FG+QVP E GG+GL +T YARL EI+ + D + + L
Sbjct: 117 AKNDMLERVEETTMQGLKELGAFGLQVPSELGGVGLCNTQYARLVEIVGMHDLGVGIVLG 176
Query: 507 AHQAIGLKGIIMTGSEEQKAKYLPKLASGEHMAAFCLTEPASGSDAASIRTRATLSEDKK 686
AHQ+IG KGI++ G++ QK KYLPK+ASGE MAAFCLTEP+SGSDAASIR+ A S K
Sbjct: 177 AHQSIGFKGILLFGTKAQKEKYLPKVASGEVMAAFCLTEPSSGSDAASIRSSAVPSPCGK 236
Query: 687 HYVLNGSKVWITNGGLASVFTVFAKTEVVD-SDGSVKDKITAFIVERDFGGVTSGKPEDK 863
+Y LNGSK+WI+NGGLA +FTVFAKT V D + G+VK+KITAF+VER FGGVT G PE K
Sbjct: 237 YYTLNGSKIWISNGGLADLFTVFAKTPVTDPATGAVKEKITAFLVERGFGGVTHGPPEKK 296
Query: 864 LGIRGSNTCEVHFEKHRVPVENV 932
+GI+ SNT EV+F++ +VP ENV
Sbjct: 297 MGIKASNTAEVYFDEVQVPTENV 319
>ref|XP_003358588.1| PREDICTED: acyl-CoA dehydrogenase family member 9,
mitochondrial-like, partial [Sus scrofa].
Length = 436
Score = 196 bits (499), Expect = 1e-50
Identities = 98/100 (98%), Positives = 98/100 (98%)
Frame = +3
Query: 633 GSDAASIRTRATLSEDKKHYVLNGSKVWITNGGLASVFTVFAKTEVVDSDGSVKDKITAF 812
GSDAASIRTRATLSEDKKHYVLNGSKVWITNGGLASVFTVFAKTEVVDSDGSVKDKITAF
Sbjct: 1 GSDAASIRTRATLSEDKKHYVLNGSKVWITNGGLASVFTVFAKTEVVDSDGSVKDKITAF 60
Query: 813 IVERDFGGVTSGKPEDKLGIRGSNTCEVHFEKHRVPVENV 932
IVERDFGGVTSGKPEDKLGIRGSNTCEVHFE RVPVENV
Sbjct: 61 IVERDFGGVTSGKPEDKLGIRGSNTCEVHFENTRVPVENV 100
>ref|NP_001161107.1| isovaleryl-CoA dehydrogenase, mitochondrial [Sus scrofa].
Length = 426
Score = 152 bits (383), Expect = 3e-37
Identities = 93/242 (38%), Positives = 138/242 (57%), Gaps = 5/242 (2%)
Frame = +3
Query: 222 EKKEVFPFPEVSQDELNEINQFVGPVEKFFTEEV--DSQKIDREGKIPN--ETLEKLKSL 389
+ + P +V E Q + KF E + +Q+ID+ + N E ++L +L
Sbjct: 31 QASSLLPVDDVINGLSEEQKQLRQTMTKFLQEHLAPQAQEIDQSNEFKNLREFWKQLGNL 90
Query: 390 GLFGMQVPEEYGGLGLSSTMYARLCEIISLDS-SIAVTLAAHQAIGLKGIIMTGSEEQKA 566
G+ G+ P +YGG GL + + E IS S ++ ++ AH + + I+ G+E QK
Sbjct: 91 GVLGITTPVQYGGTGLGYLEHVVVMEEISRASGAVGLSYGAHSNLCINQIVRNGNEAQKE 150
Query: 567 KYLPKLASGEHMAAFCLTEPASGSDAASIRTRATLSEDKKHYVLNGSKVWITNGGLASVF 746
KYLPKL SGE++ A ++E +GSD S++ +A D +YVLNG+K WITNG A V
Sbjct: 151 KYLPKLISGEYIGALAMSETNAGSDVVSMKLKADKKGD--YYVLNGNKFWITNGPDADVL 208
Query: 747 TVFAKTEVVDSDGSVKDKITAFIVERDFGGVTSGKPEDKLGIRGSNTCEVHFEKHRVPVE 926
V+AKT++ S ITAFIVE+ G ++ K DKLG+RGSNTCE+ FE +VP
Sbjct: 209 VVYAKTDLAAVPPS--RGITAFIVEKGMPGFSTSKKLDKLGMRGSNTCELIFEDCKVPAV 266
Query: 927 NV 932
N+
Sbjct: 267 NI 268
>ref|XP_003121646.2| PREDICTED: isovaleryl-CoA dehydrogenase, mitochondrial-like [Sus
scrofa].
Length = 349
Score = 138 bits (348), Expect = 4e-33
Identities = 81/184 (44%), Positives = 113/184 (61%), Gaps = 1/184 (0%)
Frame = +3
Query: 384 SLGLFGMQVPEEYGGLGLSSTMYARLCEIISLDS-SIAVTLAAHQAIGLKGIIMTGSEEQ 560
SL +G +P +YGG GL + + E IS S ++ ++ AH + L I+ G+E Q
Sbjct: 12 SLRGYGGFLPVQYGGTGLGYLEHVVVMEEISRASGAVGLSYGAHSNLCLNQIVRNGNEAQ 71
Query: 561 KAKYLPKLASGEHMAAFCLTEPASGSDAASIRTRATLSEDKKHYVLNGSKVWITNGGLAS 740
K KYLPKL SGE++ A ++E +GSD S++ +A D +YVLNG+K WITNG A
Sbjct: 72 KEKYLPKLISGEYIGALAMSETNAGSDVVSMKLKADKKGD--YYVLNGNKFWITNGPDAD 129
Query: 741 VFTVFAKTEVVDSDGSVKDKITAFIVERDFGGVTSGKPEDKLGIRGSNTCEVHFEKHRVP 920
V V+AKT++ S ITAFIVE+ G ++ K DKLG+RGSNTCE+ FE +VP
Sbjct: 130 VLVVYAKTDLAAVPPS--RGITAFIVEKGMPGFSTSKKLDKLGMRGSNTCELIFEDCKVP 187
Query: 921 VENV 932
N+
Sbjct: 188 AVNI 191
>ref|XP_001926332.2| PREDICTED: short/branched chain specific acyl-CoA dehydrogenase,
mitochondrial [Sus scrofa].
Length = 431
Score = 136 bits (342), Expect = 2e-32
Identities = 86/215 (40%), Positives = 125/215 (58%), Gaps = 3/215 (1%)
Frame = +3
Query: 297 VEKFFTEEVDS--QKIDREGKIPNETLEKLKSLGLFGMQVPEEYGGLGLSSTMYARLCE- 467
V+KF E++ K+D K+ +E L GL G++ +YGG G S + E
Sbjct: 67 VKKFAQEQIAPLVSKMDENSKMEKSVIEGLFQQGLMGIETEPKYGGTGASFFSSVLVIEE 126
Query: 468 IISLDSSIAVTLAAHQAIGLKGIIMTGSEEQKAKYLPKLASGEHMAAFCLTEPASGSDAA 647
+ +D+S+A+ + I G+E QKA YL KLA+ E + +FCL+EP++GSD+
Sbjct: 127 LAKVDASVALVCDLQNTVINDLIGRFGTEAQKATYLTKLAT-EQLGSFCLSEPSAGSDSF 185
Query: 648 SIRTRATLSEDKKHYVLNGSKVWITNGGLASVFTVFAKTEVVDSDGSVKDKITAFIVERD 827
S++TRA +D +YV+NGSK+WIT+ A +F V A VD K IT F+V+RD
Sbjct: 186 SLKTRA--DKDGDYYVINGSKMWITSAEDAGLFLVMAN---VDPALGYKG-ITCFLVDRD 239
Query: 828 FGGVTSGKPEDKLGIRGSNTCEVHFEKHRVPVENV 932
G+ GKPE+KLGIR S+TC V E +VP N+
Sbjct: 240 TEGLRVGKPENKLGIRASSTCPVTLENAKVPEANI 274
>ref|NP_999063.1| short-chain specific acyl-CoA dehydrogenase, mitochondrial
precursor [Sus scrofa].
Length = 413
Score = 134 bits (337), Expect = 7e-32
Identities = 81/202 (40%), Positives = 116/202 (57%), Gaps = 2/202 (0%)
Frame = +3
Query: 333 KIDREGKIPNETLEKLKSLGLFGMQVPEEYGGLGLSSTMYARLCEIISLD-SSIAVTLAA 509
++D+E + P ++K+ LGL M VPEE G GL Y E IS +S V ++
Sbjct: 59 QVDKEHRFPEAQVKKMGELGLMAMDVPEELSGAGLDYLAYTIAMEEISRGCASTGVIMSV 118
Query: 510 HQAIGLKGIIMTGSEEQKAKYLPKLASGEHMAAFCLTEPASGSDAASIRTRATLSEDKKH 689
+ + L I+ GS+EQK +++ SG+ + F L+EP +GSDA + T A D
Sbjct: 119 NNFLYLGPILKFGSKEQKQQWITPFTSGDKVGCFALSEPGNGSDAGAAATTAQADHDS-- 176
Query: 690 YVLNGSKVWITNGGLASVFTVFAKTEVVDSDGSVKDK-ITAFIVERDFGGVTSGKPEDKL 866
+VL+G+K WITN AS VFA T D S+++K I+AF+V G+T GK EDKL
Sbjct: 177 WVLSGTKAWITNAWEASAAVVFAST-----DRSLQNKGISAFLVPMPTAGLTLGKKEDKL 231
Query: 867 GIRGSNTCEVHFEKHRVPVENV 932
GIR S+T + FE R+P EN+
Sbjct: 232 GIRASSTANLIFEDCRIPKENL 253
>ref|NP_999204.1| medium-chain specific acyl-CoA dehydrogenase, mitochondrial
precursor [Sus scrofa].
Length = 421
Score = 130 bits (328), Expect = 8e-31
Identities = 78/219 (35%), Positives = 118/219 (53%), Gaps = 2/219 (0%)
Frame = +3
Query: 282 QFVGPVEKFFTEEVD--SQKIDREGKIPNETLEKLKSLGLFGMQVPEEYGGLGLSSTMYA 455
+F KF EE+ + + DR G+ P L++ LGL +PE +GGLGL
Sbjct: 47 EFQATARKFAREEIIPVAAEYDRTGEYPVPLLKRAWELGLMNTHIPESFGGLGLGIIDSC 106
Query: 456 RLCEIISLDSSIAVTLAAHQAIGLKGIIMTGSEEQKAKYLPKLASGEHMAAFCLTEPASG 635
+ E ++ + T +G +I+ G+ +Q+ KYL ++ M A+C+TEP +G
Sbjct: 107 LITEELAYGCTGVQTAIEANTLGQVPLIIGGNYQQQKKYLGRMTEEPLMCAYCVTEPGAG 166
Query: 636 SDAASIRTRATLSEDKKHYVLNGSKVWITNGGLASVFTVFAKTEVVDSDGSVKDKITAFI 815
SD A I+T+A D+ Y++NG K+WITNGG A+ + + A+++ D T FI
Sbjct: 167 SDVAGIKTKAEKKGDE--YIINGQKMWITNGGKANWYFLLARSD-PDPKAPASKAFTGFI 223
Query: 816 VERDFGGVTSGKPEDKLGIRGSNTCEVHFEKHRVPVENV 932
VE D GV G+ E +G R S+T + FE RVP ENV
Sbjct: 224 VEADTPGVQIGRKEINMGQRCSDTRGIVFEDVRVPKENV 262
>ref|XP_003123377.1| PREDICTED: glutaryl-CoA dehydrogenase, mitochondrial-like isoform 2
[Sus scrofa].
Length = 462
Score = 114 bits (286), Expect = 6e-26
Identities = 69/191 (36%), Positives = 104/191 (54%), Gaps = 1/191 (0%)
Frame = +3
Query: 363 ETLEKLKSLGLFGMQVPEEYGGLGLSSTMYARLC-EIISLDSSIAVTLAAHQAIGLKGII 539
E + ++ LG+ G + + YG G+SS Y L E+ +DS ++ ++ + I
Sbjct: 83 EIISEMGELGVLGPTI-KGYGCAGVSSVAYGLLARELERVDSGYRSAMSVQSSLVMHPIY 141
Query: 540 MTGSEEQKAKYLPKLASGEHMAAFCLTEPASGSDAASIRTRATLSEDKKHYVLNGSKVWI 719
GSEEQ+ KYLP+LA GE + F LTEP GSD S+ TRA + + Y LNG+K WI
Sbjct: 142 AYGSEEQQQKYLPRLAKGELLGCFGLTEPNHGSDPGSMETRARHNPSNRSYTLNGAKTWI 201
Query: 720 TNGGLASVFTVFAKTEVVDSDGSVKDKITAFIVERDFGGVTSGKPEDKLGIRGSNTCEVH 899
TN +A +F V+A+ E + I F++E+ G+++ K E K +R S T +
Sbjct: 202 TNSPVADLFVVWARCE--------DNCIRGFLLEKGMRGLSAPKIEGKFSLRASATGMII 253
Query: 900 FEKHRVPVENV 932
+ VP ENV
Sbjct: 254 MDDVEVPEENV 264
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 24,054,642
Number of extensions: 711736
Number of successful extensions: 3014
Number of sequences better than 1.0e-05: 17
Number of HSP's gapped: 2960
Number of HSP's successfully gapped: 17
Length of query: 311
Length of database: 11,343,932
Length adjustment: 99
Effective length of query: 212
Effective length of database: 8,879,129
Effective search space: 1882375348
Effective search space used: 1882375348
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 33 (17.3 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003923
(934 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr13 450 e-124
>Sscrofa_Chr13
|| Length = 218635234
Score = 450 bits (227), Expect = e-124
Identities = 227/227 (100%)
Strand = Plus / Minus
Query: 1 gcgagctcgcagcacgtgagtgaggcgctgggaaagcagtagaggcatctgcacgcaagc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 78936092 gcgagctcgcagcacgtgagtgaggcgctgggaaagcagtagaggcatctgcacgcaagc 78936033
Query: 61 aatccgtctctggcgtgatgaactgttgcgggcttttcctgcgctcggcggcggcggcgc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 78936032 aatccgtctctggcgtgatgaactgttgcgggcttttcctgcgctcggcggcggcggcgc 78935973
Query: 121 gctcctgccgagccctcgtggcctttgccgagagccggcgactgctgcgcaccagtcagc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 78935972 gctcctgccgagccctcgtggcctttgccgagagccggcgactgctgcgcaccagtcagc 78935913
Query: 181 ccagccgagctttcgccaaggagctcttcctgggcagaatcgagaag 227
|||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 78935912 ccagccgagctttcgccaaggagctcttcctgggcagaatcgagaag 78935866
Score = 351 bits (177), Expect = 4e-94
Identities = 177/177 (100%)
Strand = Plus / Plus
Query: 709 aggtctggatcaccaatggggggctggccagtgtttttactgtgtttgcgaagaccgagg 768
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 79006021 aggtctggatcaccaatggggggctggccagtgtttttactgtgtttgcgaagaccgagg 79006080
Query: 769 ttgttgactccgacggctcagtaaaggacaagatcacagcattcatagtagagagggact 828
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 79006081 ttgttgactccgacggctcagtaaaggacaagatcacagcattcatagtagagagggact 79006140
Query: 829 ttggtggagtcaccagcgggaaaccagaggataagctaggcatccgaggctccaaca 885
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 79006141 ttggtggagtcaccagcgggaaaccagaggataagctaggcatccgaggctccaaca 79006197
Score = 216 bits (109), Expect = 2e-53
Identities = 109/109 (100%)
Strand = Plus / Minus
Query: 423 ggtggcctgggcctctccagcaccatgtatgcgcggttgtgcgagatcatcagcctggac 482
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 78904786 ggtggcctgggcctctccagcaccatgtatgcgcggttgtgcgagatcatcagcctggac 78904727
Query: 483 agctccatcgctgtgaccctggcggcacaccaggccatcggcctcaagg 531
|||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 78904726 agctccatcgctgtgaccctggcggcacaccaggccatcggcctcaagg 78904678
Score = 208 bits (105), Expect = 4e-51
Identities = 105/105 (100%)
Strand = Plus / Minus
Query: 321 gtggactctcaaaaaatcgaccgtgagggaaaaatcccaaatgaaaccttagagaaactg 380
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 78908505 gtggactctcaaaaaatcgaccgtgagggaaaaatcccaaatgaaaccttagagaaactg 78908446
Query: 381 aagagcctggggctttttgggatgcaggtcccggaagaatacggt 425
|||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 78908445 aagagcctggggctttttgggatgcaggtcccggaagaatacggt 78908401
Score = 190 bits (96), Expect = 9e-46
Identities = 96/96 (100%)
Strand = Plus / Minus
Query: 226 agaaagaagttttcccgttcccagaagttagccaagatgaacttaatgaaatcaatcagt 285
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 78916760 agaaagaagttttcccgttcccagaagttagccaagatgaacttaatgaaatcaatcagt 78916701
Query: 286 ttgtgggacctgtagaaaaattcttcactgaagagg 321
||||||||||||||||||||||||||||||||||||
Sbjct: 78916700 ttgtgggacctgtagaaaaattcttcactgaagagg 78916665
Score = 165 bits (83), Expect = 5e-38
Identities = 83/83 (100%)
Strand = Plus / Plus
Query: 630 agtgggagtgatgccgcctccatccggaccagggccacactgagcgaagataagaaacac 689
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 79004145 agtgggagtgatgccgcctccatccggaccagggccacactgagcgaagataagaaacac 79004204
Query: 690 tatgtcctcaatggctccaaggt 712
|||||||||||||||||||||||
Sbjct: 79004205 tatgtcctcaatggctccaaggt 79004227
Score = 73.8 bits (37), Expect = 2e-10
Identities = 46/49 (93%)
Strand = Plus / Plus
Query: 886 cctgcgaggtccacttcgagaaacaccgggtgcccgtggaaaatgtcct 934
|||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 79006909 cctgcgaggtccacttcgagaacacccgggtgcccgtggaaaatgtcct 79006957
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 24,081,070
Number of extensions: 127
Number of successful extensions: 127
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 127
Number of HSP's successfully gapped: 7
Length of query: 934
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 913
Effective length of database: 2,808,413,156
Effective search space: 2564081211428
Effective search space used: 2564081211428
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 29 (58.0 bits)