Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003934
(1512 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_776629.1| elongation factor Ts, mitochondrial precursor [... 586 e-167
>ref|NP_776629.1| elongation factor Ts, mitochondrial precursor [Bos taurus].
Length = 338
Score = 586 bits (1510), Expect = e-167
Identities = 297/326 (91%), Positives = 305/326 (93%)
Frame = +1
Query: 43 MSLLWSLRLSLVARAASCPVRALGPSPVLPSSQAGPLLLQSPQPGHTFHAGPCLSSASSK 222
MSLL SLRL LVAR SCP+ ALGP P+LPS QAG LLQSPQ HTFH+G LSSASSK
Sbjct: 1 MSLLRSLRLCLVARTGSCPLSALGPGPLLPSLQAGLPLLQSPQQWHTFHSGSWLSSASSK 60
Query: 223 ELLMKLRRKTGYSFVNCKKALETCGGDLKQAESWLHKQAQKEGWSKAARLHGRKTKEGLI 402
ELLMKLRRKTGYSF+NCKKALETCGGDLKQAESWLHKQAQKEGWSKAARLHGRKTKEGLI
Sbjct: 61 ELLMKLRRKTGYSFINCKKALETCGGDLKQAESWLHKQAQKEGWSKAARLHGRKTKEGLI 120
Query: 403 GLLQEGNTSVLVEVNCETDFVSRNLKFQQLVQQVALGTLLHCQSLKDPLSTYSKGFLNSS 582
GLLQEG+T+VLVEVNCETDFVSRNLKFQQLVQQVALGTLLHCQ+LKD LSTYSKGFLNSS
Sbjct: 121 GLLQEGDTTVLVEVNCETDFVSRNLKFQQLVQQVALGTLLHCQNLKDQLSTYSKGFLNSS 180
Query: 583 ELSELPAGPEREGSLKDWLALAIGKLGENMTLKRAAWVKVPAGFYVGSYVHGTMQSPSLH 762
ELSELPAGPEREGSLKD LALAIGKLGENM LKRAAWVKVPAGFYVGSYVHG M SPSLH
Sbjct: 181 ELSELPAGPEREGSLKDQLALAIGKLGENMILKRAAWVKVPAGFYVGSYVHGAMHSPSLH 240
Query: 763 NLVLGKYGALVICETSERKANLEDLGRRLGQHVVGMAPLSVGSLDDEPGGEAETRMLSQP 942
NLVLGKYGALVICETSE KANL DLGRRLGQHVVGMAPLSVGSLDDEPGGEAET+MLSQP
Sbjct: 241 NLVLGKYGALVICETSELKANLADLGRRLGQHVVGMAPLSVGSLDDEPGGEAETKMLSQP 300
Query: 943 YLLDPSITLGQYVQPQGVSVVDFVRF 1020
YLLDPSITLGQYVQP GVSVVDFVRF
Sbjct: 301 YLLDPSITLGQYVQPHGVSVVDFVRF 326
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 52,641,018
Number of extensions: 1585497
Number of successful extensions: 5573
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 5562
Number of HSP's successfully gapped: 1
Length of query: 504
Length of database: 17,681,374
Length adjustment: 107
Effective length of query: 397
Effective length of database: 14,140,958
Effective search space: 5613960326
Effective search space used: 5613960326
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003934
(1512 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_538255.2| PREDICTED: similar to Elongation factor Ts, mit... 511 e-145
>ref|XP_538255.2| PREDICTED: similar to Elongation factor Ts, mitochondrial precursor
(EF-Ts) (EF-TsMt) [Canis familiaris].
Length = 432
Score = 511 bits (1317), Expect = e-145
Identities = 257/286 (89%), Positives = 270/286 (94%), Gaps = 1/286 (0%)
Frame = +1
Query: 166 PQPGHTFHAGPCL-SSASSKELLMKLRRKTGYSFVNCKKALETCGGDLKQAESWLHKQAQ 342
P+P FHAGP L SSA SK+ L+KLRR+TGYSFVNCKKALE CGGDLKQAESWLHKQAQ
Sbjct: 136 PRP-RPFHAGPWLWSSAPSKDALVKLRRRTGYSFVNCKKALEACGGDLKQAESWLHKQAQ 194
Query: 343 KEGWSKAARLHGRKTKEGLIGLLQEGNTSVLVEVNCETDFVSRNLKFQQLVQQVALGTLL 522
KEGWS+AA+LHGRKTKEGLIGLLQ+GN +VLVEVNCETDFVSRNLKFQQLVQQVALGTLL
Sbjct: 195 KEGWSRAAKLHGRKTKEGLIGLLQDGNATVLVEVNCETDFVSRNLKFQQLVQQVALGTLL 254
Query: 523 HCQSLKDPLSTYSKGFLNSSELSELPAGPEREGSLKDWLALAIGKLGENMTLKRAAWVKV 702
HCQ+LKD LSTYSKGFLNSSELSELPAGPE+EG LKD LALAIGKLGENMTLKRAAWVKV
Sbjct: 255 HCQNLKDQLSTYSKGFLNSSELSELPAGPEKEGCLKDQLALAIGKLGENMTLKRAAWVKV 314
Query: 703 PAGFYVGSYVHGTMQSPSLHNLVLGKYGALVICETSERKANLEDLGRRLGQHVVGMAPLS 882
PAGFYVGSYVHG M S SLHNL LGKYGALV+CETSERKA+LEDLGRRLGQHVVGMAPLS
Sbjct: 315 PAGFYVGSYVHGAMHSSSLHNLELGKYGALVVCETSERKASLEDLGRRLGQHVVGMAPLS 374
Query: 883 VGSLDDEPGGEAETRMLSQPYLLDPSITLGQYVQPQGVSVVDFVRF 1020
VGSLDDEPGGEAET+MLSQPYLLDPSITLGQYVQPQGVSVVDFVRF
Sbjct: 375 VGSLDDEPGGEAETKMLSQPYLLDPSITLGQYVQPQGVSVVDFVRF 420
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 53,655,669
Number of extensions: 1434744
Number of successful extensions: 5831
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 5812
Number of HSP's successfully gapped: 1
Length of query: 504
Length of database: 18,874,504
Length adjustment: 107
Effective length of query: 397
Effective length of database: 15,307,552
Effective search space: 6077098144
Effective search space used: 6077098144
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003934
(1512 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_005717.3| elongation factor Ts, mitochondrial isoform 2 p... 536 e-152
Alignment gi|NP_001166167.1| elongation factor Ts, mitochondrial isoform ... 524 e-149
Alignment gi|NP_001166168.1| elongation factor Ts, mitochondrial isoform ... 306 3e-83
Alignment gi|NP_001166166.1| elongation factor Ts, mitochondrial isoform ... 256 3e-68
>ref|NP_005717.3| elongation factor Ts, mitochondrial isoform 2 precursor [Homo
sapiens].
Length = 325
Score = 536 bits (1382), Expect = e-152
Identities = 278/327 (85%), Positives = 291/327 (88%), Gaps = 1/327 (0%)
Frame = +1
Query: 43 MSLLWSLRLSLVARAASCPVRALGPSPVLPSSQAGPLLLQSPQPGHTFHAGPCLS-SASS 219
MSLL SLR+ LVAR S P AG LL QSPQP HTF+AGP LS SASS
Sbjct: 1 MSLLRSLRVFLVARTGSYP--------------AGSLLRQSPQPRHTFYAGPRLSASASS 46
Query: 220 KELLMKLRRKTGYSFVNCKKALETCGGDLKQAESWLHKQAQKEGWSKAARLHGRKTKEGL 399
KELLMKLRRKTGYSFVNCKKALETCGGDLKQAE WLHK+AQKEGWSKAA+L GRKTKEGL
Sbjct: 47 KELLMKLRRKTGYSFVNCKKALETCGGDLKQAEIWLHKEAQKEGWSKAAKLQGRKTKEGL 106
Query: 400 IGLLQEGNTSVLVEVNCETDFVSRNLKFQQLVQQVALGTLLHCQSLKDPLSTYSKGFLNS 579
IGLLQEGNT+VLVEVNCETDFVSRNLKFQ LVQQVALGT++HCQ+LKD S YSKGFLNS
Sbjct: 107 IGLLQEGNTTVLVEVNCETDFVSRNLKFQLLVQQVALGTMMHCQTLKDQPSAYSKGFLNS 166
Query: 580 SELSELPAGPEREGSLKDWLALAIGKLGENMTLKRAAWVKVPAGFYVGSYVHGTMQSPSL 759
SELS LPAGP+REGSLKD LALAIGKLGENM LKRAAWVKVP+GFYVGSYVHG MQSPSL
Sbjct: 167 SELSGLPAGPDREGSLKDQLALAIGKLGENMILKRAAWVKVPSGFYVGSYVHGAMQSPSL 226
Query: 760 HNLVLGKYGALVICETSERKANLEDLGRRLGQHVVGMAPLSVGSLDDEPGGEAETRMLSQ 939
H LVLGKYGALVICETSE+K NLED+GRRLGQHVVGMAPLSVGSLDDEPGGEAET+MLSQ
Sbjct: 227 HKLVLGKYGALVICETSEQKTNLEDVGRRLGQHVVGMAPLSVGSLDDEPGGEAETKMLSQ 286
Query: 940 PYLLDPSITLGQYVQPQGVSVVDFVRF 1020
PYLLDPSITLGQYVQPQGVSVVDFVRF
Sbjct: 287 PYLLDPSITLGQYVQPQGVSVVDFVRF 313
>ref|NP_001166167.1| elongation factor Ts, mitochondrial isoform 1 precursor [Homo
sapiens].
Length = 346
Score = 524 bits (1350), Expect = e-149
Identities = 278/348 (79%), Positives = 291/348 (83%), Gaps = 22/348 (6%)
Frame = +1
Query: 43 MSLLWSLRLSLVARAASCPVRALGPSPVLPSSQAGPLLLQSPQPGHTFHAGPCLS-SASS 219
MSLL SLR+ LVAR S P AG LL QSPQP HTF+AGP LS SASS
Sbjct: 1 MSLLRSLRVFLVARTGSYP--------------AGSLLRQSPQPRHTFYAGPRLSASASS 46
Query: 220 KELLMKLRRKTGYSFVNCKKALETCGGDLKQAESWLHKQAQKEGWSKAARLHGRKTKEGL 399
KELLMKLRRKTGYSFVNCKKALETCGGDLKQAE WLHK+AQKEGWSKAA+L GRKTKEGL
Sbjct: 47 KELLMKLRRKTGYSFVNCKKALETCGGDLKQAEIWLHKEAQKEGWSKAAKLQGRKTKEGL 106
Query: 400 IGLLQEGNTSVLVEVNCETDFVSRNLKFQQLVQQVALGTLLHCQSLKDPLSTYSK----- 564
IGLLQEGNT+VLVEVNCETDFVSRNLKFQ LVQQVALGT++HCQ+LKD S YSK
Sbjct: 107 IGLLQEGNTTVLVEVNCETDFVSRNLKFQLLVQQVALGTMMHCQTLKDQPSAYSKVQWLT 166
Query: 565 ----------------GFLNSSELSELPAGPEREGSLKDWLALAIGKLGENMTLKRAAWV 696
GFLNSSELS LPAGP+REGSLKD LALAIGKLGENM LKRAAWV
Sbjct: 167 PVNLALWEAEAGGSLEGFLNSSELSGLPAGPDREGSLKDQLALAIGKLGENMILKRAAWV 226
Query: 697 KVPAGFYVGSYVHGTMQSPSLHNLVLGKYGALVICETSERKANLEDLGRRLGQHVVGMAP 876
KVP+GFYVGSYVHG MQSPSLH LVLGKYGALVICETSE+K NLED+GRRLGQHVVGMAP
Sbjct: 227 KVPSGFYVGSYVHGAMQSPSLHKLVLGKYGALVICETSEQKTNLEDVGRRLGQHVVGMAP 286
Query: 877 LSVGSLDDEPGGEAETRMLSQPYLLDPSITLGQYVQPQGVSVVDFVRF 1020
LSVGSLDDEPGGEAET+MLSQPYLLDPSITLGQYVQPQGVSVVDFVRF
Sbjct: 287 LSVGSLDDEPGGEAETKMLSQPYLLDPSITLGQYVQPQGVSVVDFVRF 334
>ref|NP_001166168.1| elongation factor Ts, mitochondrial isoform 4 precursor [Homo
sapiens].
Length = 215
Score = 306 bits (785), Expect = 3e-83
Identities = 164/205 (80%), Positives = 173/205 (84%), Gaps = 1/205 (0%)
Frame = +1
Query: 43 MSLLWSLRLSLVARAASCPVRALGPSPVLPSSQAGPLLLQSPQPGHTFHAGPCLS-SASS 219
MSLL SLR+ LVAR S P AG LL QSPQP HTF+AGP LS SASS
Sbjct: 1 MSLLRSLRVFLVARTGSYP--------------AGSLLRQSPQPRHTFYAGPRLSASASS 46
Query: 220 KELLMKLRRKTGYSFVNCKKALETCGGDLKQAESWLHKQAQKEGWSKAARLHGRKTKEGL 399
KELLMKLRRKTGYSFVNCKKALETCGGDLKQAE WLHK+AQKEGWSKAA+L GRKTKEGL
Sbjct: 47 KELLMKLRRKTGYSFVNCKKALETCGGDLKQAEIWLHKEAQKEGWSKAAKLQGRKTKEGL 106
Query: 400 IGLLQEGNTSVLVEVNCETDFVSRNLKFQQLVQQVALGTLLHCQSLKDPLSTYSKGFLNS 579
IGLLQEGNT+VLVEVNCETDFVSRNLKFQ LVQQVALGT++HCQ+LKD S YSKGFLNS
Sbjct: 107 IGLLQEGNTTVLVEVNCETDFVSRNLKFQLLVQQVALGTMMHCQTLKDQPSAYSKGFLNS 166
Query: 580 SELSELPAGPEREGSLKDWLALAIG 654
SELS LPAGP+REGSLKD LALAIG
Sbjct: 167 SELSGLPAGPDREGSLKDQLALAIG 191
>ref|NP_001166166.1| elongation factor Ts, mitochondrial isoform 3 precursor [Homo
sapiens].
Length = 167
Score = 256 bits (655), Expect = 3e-68
Identities = 137/175 (78%), Positives = 145/175 (82%), Gaps = 1/175 (0%)
Frame = +1
Query: 43 MSLLWSLRLSLVARAASCPVRALGPSPVLPSSQAGPLLLQSPQPGHTFHAGPCLS-SASS 219
MSLL SLR+ LVAR S P AG LL QSPQP HTF+AGP LS SASS
Sbjct: 1 MSLLRSLRVFLVARTGSYP--------------AGSLLRQSPQPRHTFYAGPRLSASASS 46
Query: 220 KELLMKLRRKTGYSFVNCKKALETCGGDLKQAESWLHKQAQKEGWSKAARLHGRKTKEGL 399
KELLMKLRRKTGYSFVNCKKALETCGGDLKQAE WLHK+AQKEGWSKAA+L GRKTKEGL
Sbjct: 47 KELLMKLRRKTGYSFVNCKKALETCGGDLKQAEIWLHKEAQKEGWSKAAKLQGRKTKEGL 106
Query: 400 IGLLQEGNTSVLVEVNCETDFVSRNLKFQQLVQQVALGTLLHCQSLKDPLSTYSK 564
IGLLQEGNT+VLVEVNCETDFVSRNLKFQ LVQQVALGT++HCQ+LKD S YSK
Sbjct: 107 IGLLQEGNTTVLVEVNCETDFVSRNLKFQLLVQQVALGTMMHCQTLKDQPSAYSK 161
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 52,649,155
Number of extensions: 1395978
Number of successful extensions: 5512
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 5490
Number of HSP's successfully gapped: 4
Length of query: 504
Length of database: 18,297,164
Length adjustment: 107
Effective length of query: 397
Effective length of database: 14,770,016
Effective search space: 5863696352
Effective search space used: 5863696352
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003934
(1512 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_079813.1| elongation factor Ts, mitochondrial precursor [... 516 e-146
>ref|NP_079813.1| elongation factor Ts, mitochondrial precursor [Mus musculus].
Length = 324
Score = 516 bits (1330), Expect = e-146
Identities = 272/327 (83%), Positives = 283/327 (86%), Gaps = 1/327 (0%)
Frame = +1
Query: 43 MSLLWSLRLSLVARAASCPVRALGPSPVLPSSQAGPLLLQSPQPGHTFHAGPCLSSA-SS 219
MSLL SLR PV G S A +LLQ QP TFHAGP LSSA SS
Sbjct: 1 MSLLRSLRFF--------PVACTGRS-------ARAVLLQPSQPWLTFHAGPSLSSAASS 45
Query: 220 KELLMKLRRKTGYSFVNCKKALETCGGDLKQAESWLHKQAQKEGWSKAARLHGRKTKEGL 399
KELLMKLRRKTGYSFVNCKKALETCGGDLKQAE WLHKQAQKEGWSKAA+LHGRKTKEGL
Sbjct: 46 KELLMKLRRKTGYSFVNCKKALETCGGDLKQAEDWLHKQAQKEGWSKAAKLHGRKTKEGL 105
Query: 400 IGLLQEGNTSVLVEVNCETDFVSRNLKFQQLVQQVALGTLLHCQSLKDPLSTYSKGFLNS 579
IGLLQEGNT+VLVEVNCETDFVSRNLKFQQLVQQVALGT+ HCQ+L D LSTYSKGFLNS
Sbjct: 106 IGLLQEGNTAVLVEVNCETDFVSRNLKFQQLVQQVALGTMAHCQNLTDRLSTYSKGFLNS 165
Query: 580 SELSELPAGPEREGSLKDWLALAIGKLGENMTLKRAAWVKVPAGFYVGSYVHGTMQSPSL 759
SELSEL AGP+REGSLKD LALAIGKLGENM LKRAAWVKVP+GFYVGSYVHG QSPSL
Sbjct: 166 SELSELAAGPDREGSLKDQLALAIGKLGENMILKRAAWVKVPSGFYVGSYVHGVTQSPSL 225
Query: 760 HNLVLGKYGALVICETSERKANLEDLGRRLGQHVVGMAPLSVGSLDDEPGGEAETRMLSQ 939
NLVLGKYGALVICET E+ ANLE++GRRLGQHVVGMAPLSVGSLDDEPGGE ETRML Q
Sbjct: 226 QNLVLGKYGALVICETPEQIANLEEVGRRLGQHVVGMAPLSVGSLDDEPGGETETRMLPQ 285
Query: 940 PYLLDPSITLGQYVQPQGVSVVDFVRF 1020
PYLLDPSITLGQYVQPQGV+VVDFVRF
Sbjct: 286 PYLLDPSITLGQYVQPQGVTVVDFVRF 312
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 44,742,472
Number of extensions: 1179277
Number of successful extensions: 4515
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 4507
Number of HSP's successfully gapped: 1
Length of query: 504
Length of database: 15,617,559
Length adjustment: 106
Effective length of query: 398
Effective length of database: 12,433,743
Effective search space: 4948629714
Effective search space used: 4948629714
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003934
(1512 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_003361935.1| PREDICTED: elongation factor Ts, mitochondri... 306 2e-83
Alignment gi|XP_003360783.1| PREDICTED: elongation factor Ts, mitochondri... 306 2e-83
>ref|XP_003361935.1| PREDICTED: elongation factor Ts, mitochondrial-like, partial [Sus
scrofa].
Length = 164
Score = 306 bits (784), Expect = 2e-83
Identities = 152/152 (100%), Positives = 152/152 (100%)
Frame = +1
Query: 565 GFLNSSELSELPAGPEREGSLKDWLALAIGKLGENMTLKRAAWVKVPAGFYVGSYVHGTM 744
GFLNSSELSELPAGPEREGSLKDWLALAIGKLGENMTLKRAAWVKVPAGFYVGSYVHGTM
Sbjct: 1 GFLNSSELSELPAGPEREGSLKDWLALAIGKLGENMTLKRAAWVKVPAGFYVGSYVHGTM 60
Query: 745 QSPSLHNLVLGKYGALVICETSERKANLEDLGRRLGQHVVGMAPLSVGSLDDEPGGEAET 924
QSPSLHNLVLGKYGALVICETSERKANLEDLGRRLGQHVVGMAPLSVGSLDDEPGGEAET
Sbjct: 61 QSPSLHNLVLGKYGALVICETSERKANLEDLGRRLGQHVVGMAPLSVGSLDDEPGGEAET 120
Query: 925 RMLSQPYLLDPSITLGQYVQPQGVSVVDFVRF 1020
RMLSQPYLLDPSITLGQYVQPQGVSVVDFVRF
Sbjct: 121 RMLSQPYLLDPSITLGQYVQPQGVSVVDFVRF 152
>ref|XP_003360783.1| PREDICTED: elongation factor Ts, mitochondrial-like, partial [Sus
scrofa].
Length = 166
Score = 306 bits (784), Expect = 2e-83
Identities = 159/176 (90%), Positives = 159/176 (90%), Gaps = 2/176 (1%)
Frame = +1
Query: 43 MSLLWSLRLSLVARAASCPVRALGPSPVLPSSQAGPLLLQSPQPGHTFHAGPCLSSASSK 222
MSLLWSLRLSLVARAASCP AGPLLLQSPQPGHTFHAGPCLSSASSK
Sbjct: 1 MSLLWSLRLSLVARAASCP--------------AGPLLLQSPQPGHTFHAGPCLSSASSK 46
Query: 223 ELLMKLRRKTGYSFVNCKKAL--ETCGGDLKQAESWLHKQAQKEGWSKAARLHGRKTKEG 396
ELLMKLRRKTGYSFVNCKKAL ETC GDLKQAESWLHKQAQKEGWSKAARLHGRKTKEG
Sbjct: 47 ELLMKLRRKTGYSFVNCKKALXLETCCGDLKQAESWLHKQAQKEGWSKAARLHGRKTKEG 106
Query: 397 LIGLLQEGNTSVLVEVNCETDFVSRNLKFQQLVQQVALGTLLHCQSLKDPLSTYSK 564
LIGLLQEGNTSVLVEVNCETDFVSRNLKFQQLVQQVALGTLLHCQSLKDPLSTYSK
Sbjct: 107 LIGLLQEGNTSVLVEVNCETDFVSRNLKFQQLVQQVALGTLLHCQSLKDPLSTYSK 162
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 35,642,880
Number of extensions: 1308918
Number of successful extensions: 3539
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 3531
Number of HSP's successfully gapped: 2
Length of query: 504
Length of database: 11,343,932
Length adjustment: 103
Effective length of query: 401
Effective length of database: 8,779,541
Effective search space: 3520595941
Effective search space used: 3520595941
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003934
(1512 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|GL895994.1| Sus scrofa unplaced genomic scaffold chrU_scaffol... 1318 0.0
gb|GL892775.1| Sus scrofa unplaced genomic scaffold chrU_scaffol... 305 4e-80
>gb|GL895994.1| Sus scrofa unplaced genomic scaffold chrU_scaffold4503
Length = 71876
Score = 1318 bits (665), Expect = 0.0
Identities = 665/665 (100%)
Strand = Plus / Minus
Query: 652 gggaaactgggagaaaacatgactcttaaacgagctgcatgggtgaaggtgccagctggg 711
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 67351 gggaaactgggagaaaacatgactcttaaacgagctgcatgggtgaaggtgccagctggg 67292
Query: 712 ttctatgtgggctcttatgtccatgggacaatgcagagtccctcactccacaacctggtg 771
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 67291 ttctatgtgggctcttatgtccatgggacaatgcagagtccctcactccacaacctggtg 67232
Query: 772 ctggggaagtatggggccctggtcatctgcgagacgtctgagcggaaagcaaaccttgaa 831
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 67231 ctggggaagtatggggccctggtcatctgcgagacgtctgagcggaaagcaaaccttgaa 67172
Query: 832 gaccttggccgccgccttgggcagcacgtggtgggcatggctcctctctctgttggctcc 891
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 67171 gaccttggccgccgccttgggcagcacgtggtgggcatggctcctctctctgttggctcc 67112
Query: 892 ctggacgatgagcctgggggagaggcagaaaccaggatgctgtcccagccatacttgctg 951
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 67111 ctggacgatgagcctgggggagaggcagaaaccaggatgctgtcccagccatacttgctg 67052
Query: 952 gatccctccatcacacttggacagtatgtgcagccccaaggggtatctgtagtagacttt 1011
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 67051 gatccctccatcacacttggacagtatgtgcagccccaaggggtatctgtagtagacttt 66992
Query: 1012 gtgcggttcgaatgtggagaaggcgaagaactagcagaggccgaatagcttccagagact 1071
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 66991 gtgcggttcgaatgtggagaaggcgaagaactagcagaggccgaatagcttccagagact 66932
Query: 1072 tttggcccatgggaaaacatttattcttaaccgtggacattattacaaaaagaagttatt 1131
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 66931 tttggcccatgggaaaacatttattcttaaccgtggacattattacaaaaagaagttatt 66872
Query: 1132 tcctaagcatcttcaaacccagaatttgtttttcatttgagttcataatgaaattatata 1191
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 66871 tcctaagcatcttcaaacccagaatttgtttttcatttgagttcataatgaaattatata 66812
Query: 1192 cttcatgggtagagttattaaataaaattaatagagtagaattttttccttgttttcgta 1251
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 66811 cttcatgggtagagttattaaataaaattaatagagtagaattttttccttgttttcgta 66752
Query: 1252 atgctgggtctagcttttttgtgccttgcttgtggcaggttttagaaagcaacaggtggg 1311
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 66751 atgctgggtctagcttttttgtgccttgcttgtggcaggttttagaaagcaacaggtggg 66692
Query: 1312 cttta 1316
|||||
Sbjct: 66691 cttta 66687
Score = 176 bits (89), Expect = 2e-41
Identities = 89/89 (100%)
Strand = Plus / Minus
Query: 565 ggcttcttgaattcttccgagctttctgaacttccagcgggccctgagagagaagggtct 624
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 69517 ggcttcttgaattcttccgagctttctgaacttccagcgggccctgagagagaagggtct 69458
Query: 625 ctcaaagattggctggccttagcaattgg 653
|||||||||||||||||||||||||||||
Sbjct: 69457 ctcaaagattggctggccttagcaattgg 69429
>gb|GL892775.1| Sus scrofa unplaced genomic scaffold chrU_scaffold1606
Length = 50433
Score = 305 bits (154), Expect = 4e-80
Identities = 174/181 (96%), Gaps = 6/181 (3%)
Strand = Plus / Minus
Query: 139 caggcggggccccttctgcttcagtcgccgcagccggggcatacgtttcacgcagggcca 198
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2638 caggcggggccccttctgcttcagtcgccgcagccggggcatacgtttcacgcagggcca 2579
Query: 199 tgcctgtcctccgcctccagcaaggagctcctcatgaagctgcggcggaagacgggctac 258
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2578 tgcctgtcctccgcctccagcaaggagctcctcatgaagctgcggcggaagacgggctac 2519
Query: 259 tcctttgtaaactgcaagaaagct------ctggagacttgcggtggggatctcaaacag 312
|||||||||||||||||||||||| |||||||||||| |||||||||||||||||
Sbjct: 2518 tcctttgtaaactgcaagaaagctctgnntctggagacttgctgtggggatctcaaacag 2459
Query: 313 g 313
|
Sbjct: 2458 g 2458
Score = 264 bits (133), Expect = 1e-67
Identities = 133/133 (100%)
Strand = Plus / Minus
Query: 311 aggcagagagctggctccacaagcaggcccagaaggagggctggagtaaagctgccaggc 370
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1533 aggcagagagctggctccacaagcaggcccagaaggagggctggagtaaagctgccaggc 1474
Query: 371 tccatgggaggaagactaaagaaggtctgattgggctgctgcaggaaggaaacacaagtg 430
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1473 tccatgggaggaagactaaagaaggtctgattgggctgctgcaggaaggaaacacaagtg 1414
Query: 431 tgttggtagaggt 443
|||||||||||||
Sbjct: 1413 tgttggtagaggt 1401
Score = 264 bits (133), Expect = 1e-67
Identities = 139/141 (98%)
Strand = Plus / Minus
Query: 2 accggtgcgctggccagcggcagtgcacggccccaaggaagatgtcgctcctgtggtcgc 61
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 2986 accggtgcgctggccagcggcagtgcacggccctgaggaagatgtcgctcctgtggtcgc 2927
Query: 62 tgcgcctgtccctggttgcgcgggctgcgagctgcccagtgagggctcttggccccagcc 121
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2926 tgcgcctgtccctggttgcgcgggctgcgagctgcccagtgagggctcttggccccagcc 2867
Query: 122 ccgttctgccttcctcgcagg 142
|||||||||||||||||||||
Sbjct: 2866 ccgttctgccttcctcgcagg 2846
Score = 250 bits (126), Expect = 2e-63
Identities = 126/126 (100%)
Strand = Plus / Minus
Query: 440 aggtaaactgtgagacagattttgtttccagaaacttaaaatttcaacaattggtccagc 499
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 341 aggtaaactgtgagacagattttgtttccagaaacttaaaatttcaacaattggtccagc 282
Query: 500 aagtagccctgggaaccctgttgcactgtcagagcctaaaggatccactctccacgtata 559
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 281 aagtagccctgggaaccctgttgcactgtcagagcctaaaggatccactctccacgtata 222
Query: 560 gtaaag 565
||||||
Sbjct: 221 gtaaag 216
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 42,688,612
Number of extensions: 298
Number of successful extensions: 298
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 298
Number of HSP's successfully gapped: 7
Length of query: 1512
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1491
Effective length of database: 2,808,413,156
Effective search space: 4187344015596
Effective search space used: 4187344015596
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)