Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003950
(1305 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001092448.1| atlastin-3 [Bos taurus]. 617 e-177
Alignment gi|NP_001229240.1| atlastin-2 [Bos taurus]. 486 e-137
Alignment gi|NP_001029803.1| atlastin-1 [Bos taurus]. 456 e-128
Alignment gi|NP_001070607.1| RING finger protein 112 [Bos taurus]. 81 2e-15
Alignment gi|XP_001249919.2| PREDICTED: guanylate binding protein 4-like ... 72 1e-12
Alignment gi|NP_001095731.1| guanylate binding protein 4 [Bos taurus]. 70 3e-12
Alignment gi|XP_001788656.1| PREDICTED: guanylate binding protein 4-like ... 70 3e-12
Alignment gi|XP_002686289.1| PREDICTED: guanylate binding protein 4-like ... 67 5e-11
Alignment gi|NP_001179821.1| guanylate-binding protein 6 [Bos taurus]. 65 1e-10
Alignment gi|XP_002686309.1| PREDICTED: guanylate binding protein family,... 65 1e-10
>ref|NP_001092448.1| atlastin-3 [Bos taurus].
Length = 541
Score = 617 bits (1592), Expect = e-177
Identities = 311/348 (89%), Positives = 320/348 (91%), Gaps = 1/348 (0%)
Frame = +2
Query: 263 MLSPQXXXXXXXXXXXXXMEGGKPGPVQVVMVQKDQHSFELEEKALASILLQDHIRDLDV 442
MLSPQ ME GKPGPVQVV+VQKDQHSFELEEKALASILLQDHIR+LDV
Sbjct: 1 MLSPQRAVAAASGGAGDAMESGKPGPVQVVLVQKDQHSFELEEKALASILLQDHIRELDV 60
Query: 443 VVVSVAGAFRKGKSFFLDFMLRYLYFQKEGGHSNWLGDPEEPLTGFSWRGGSDPETTGIQ 622
VVVSVAGAFRKGKSFFLDFMLRYLYFQKEGGHSNWLGDPEEPLTGFSWRGGSDPETTGIQ
Sbjct: 61 VVVSVAGAFRKGKSFFLDFMLRYLYFQKEGGHSNWLGDPEEPLTGFSWRGGSDPETTGIQ 120
Query: 623 IWNEVFTVEKPGGKKVAVVLMDTQGAFDSQSTVKDCATIFALSTMTSSVQIYNLSQNIQE 802
IW+EVFTVEKPGGKKVAVVLMDTQGAFDSQSTVKDCATIFALSTMTSSVQIYNLSQNIQE
Sbjct: 121 IWSEVFTVEKPGGKKVAVVLMDTQGAFDSQSTVKDCATIFALSTMTSSVQIYNLSQNIQE 180
Query: 803 DDLQQLQLFTEYGRLAMDEIFQKPFQTLMFLVRDWSFPYEYNYGLQGGMSFLEKRLQVKE 982
DDLQQLQLFTEYGRLAMDEIFQKPFQTLMFLVRDWSFPYEYNYGLQGGMSFLEKRLQVKE
Sbjct: 181 DDLQQLQLFTEYGRLAMDEIFQKPFQTLMFLVRDWSFPYEYNYGLQGGMSFLEKRLQVKE 240
Query: 983 HQHEEIQNVRNHIHSCFSSVTCFLLPHPGLRVATSPDFDGKLKDIDSEFKEQLQILIPYV 1162
HQHEEIQNVRNHIHSCFSSV+CFLLPHPGL+VATSPDFDGKLKDI SEFKEQLQ LI +V
Sbjct: 241 HQHEEIQNVRNHIHSCFSSVSCFLLPHPGLQVATSPDFDGKLKDIASEFKEQLQTLILHV 300
Query: 1163 LNPANLMEKEINGSKVTCRGLLEYFRHTLKSTR-ERSASPPVMLQATA 1303
LNPANLMEKEINGSKVTCRGLLEYF+ +K + E P MLQATA
Sbjct: 301 LNPANLMEKEINGSKVTCRGLLEYFKAYIKIYQGEDLPHPKSMLQATA 348
>ref|NP_001229240.1| atlastin-2 [Bos taurus].
Length = 583
Score = 486 bits (1252), Expect = e-137
Identities = 232/326 (71%), Positives = 280/326 (85%), Gaps = 1/326 (0%)
Frame = +2
Query: 329 KPGPVQVVMVQKDQHSFELEEKALASILLQDHIRDLDVVVVSVAGAFRKGKSFFLDFMLR 508
KP PVQ+V+ +D H+FEL+E+AL ILLQ+HIRDL++VVVSVAGAFRKGKSF LDFMLR
Sbjct: 57 KPCPVQIVLAHEDDHNFELDEEALEQILLQEHIRDLNIVVVSVAGAFRKGKSFLLDFMLR 116
Query: 509 YLYFQKEGGHSNWLGDPEEPLTGFSWRGGSDPETTGIQIWNEVFTVEKPGGKKVAVVLMD 688
Y+Y + +W+G EPLTGF+WRGG + ETTGIQ+WNEVF +E+P G KVAV+LMD
Sbjct: 117 YMYNKDS---QSWIGGNNEPLTGFTWRGGCERETTGIQVWNEVFVIERPNGTKVAVLLMD 173
Query: 689 TQGAFDSQSTVKDCATIFALSTMTSSVQIYNLSQNIQEDDLQQLQLFTEYGRLAMDEIFQ 868
TQGAFDSQST+KDCAT+FALSTMTSSVQ+YNLSQNIQEDDLQ LQLFTEYGRLAM+EI+Q
Sbjct: 174 TQGAFDSQSTIKDCATVFALSTMTSSVQVYNLSQNIQEDDLQHLQLFTEYGRLAMEEIYQ 233
Query: 869 KPFQTLMFLVRDWSFPYEYNYGLQGGMSFLEKRLQVKEHQHEEIQNVRNHIHSCFSSVTC 1048
KPFQTLMFL+RDWS+PYE++YGL+GG FLEKRLQVK++QHEE+QNVR HIH+CFS++ C
Sbjct: 234 KPFQTLMFLIRDWSYPYEHSYGLEGGKQFLEKRLQVKQNQHEELQNVRKHIHNCFSNLGC 293
Query: 1049 FLLPHPGLRVATSPDFDGKLKDIDSEFKEQLQILIPYVLNPANLMEKEINGSKVTCRGLL 1228
FLLPHPGL+VAT+P FDG+LKDID EFK +L+ L+P +L P NL+EKEI+GSKVTCR L+
Sbjct: 294 FLLPHPGLKVATNPSFDGRLKDIDEEFKRELRNLVPLLLAPENLVEKEISGSKVTCRDLV 353
Query: 1229 EYFRHTLKSTR-ERSASPPVMLQATA 1303
EYF+ +K + E P MLQATA
Sbjct: 354 EYFKAYIKIYQGEELPHPKSMLQATA 379
>ref|NP_001029803.1| atlastin-1 [Bos taurus].
Length = 558
Score = 456 bits (1174), Expect = e-128
Identities = 223/326 (68%), Positives = 272/326 (83%), Gaps = 1/326 (0%)
Frame = +2
Query: 329 KPGPVQVVMVQKDQHSFELEEKALASILLQDHIRDLDVVVVSVAGAFRKGKSFFLDFMLR 508
K GPVQV++V KD HSFEL+E AL ILL + +RD +VV VSVAGAFRKGKSF +DFMLR
Sbjct: 31 KAGPVQVLVV-KDDHSFELDETALNRILLSEAVRDKEVVAVSVAGAFRKGKSFLMDFMLR 89
Query: 509 YLYFQKEGGHSNWLGDPEEPLTGFSWRGGSDPETTGIQIWNEVFTVEKPGGKKVAVVLMD 688
Y+Y Q+ +W+GD EPLTGFSWRGGS+ ETTGIQIW+E+F + KP GKKVAV+LMD
Sbjct: 90 YMYNQES---VDWVGDHNEPLTGFSWRGGSERETTGIQIWSEIFLINKPDGKKVAVLLMD 146
Query: 689 TQGAFDSQSTVKDCATIFALSTMTSSVQIYNLSQNIQEDDLQQLQLFTEYGRLAMDEIFQ 868
TQG FDSQST++D AT+FALSTM SS+Q+YNLSQN+QEDDLQ LQLFTEYGRLAM+E F
Sbjct: 147 TQGTFDSQSTLRDSATVFALSTMISSIQVYNLSQNVQEDDLQHLQLFTEYGRLAMEETFL 206
Query: 869 KPFQTLMFLVRDWSFPYEYNYGLQGGMSFLEKRLQVKEHQHEEIQNVRNHIHSCFSSVTC 1048
KPFQ+L+FLVRDWSFPYE++YG GG FLEKRL+V +QHEE+QNVR HIHSCF+ ++C
Sbjct: 207 KPFQSLIFLVRDWSFPYEFSYGSDGGSKFLEKRLKVSGNQHEELQNVRKHIHSCFTKISC 266
Query: 1049 FLLPHPGLRVATSPDFDGKLKDIDSEFKEQLQILIPYVLNPANLMEKEINGSKVTCRGLL 1228
FLLPHPGL+VAT+P+FDGKLK+ID EF + L+ILIP++L+P +L KEING+K+TCRGL+
Sbjct: 267 FLLPHPGLKVATNPNFDGKLKEIDDEFIKNLKILIPWLLSPESLDIKEINGNKITCRGLV 326
Query: 1229 EYFRHTLKSTR-ERSASPPVMLQATA 1303
EYF+ +K + E P MLQATA
Sbjct: 327 EYFKAYIKIYQGEELPHPKSMLQATA 352
>ref|NP_001070607.1| RING finger protein 112 [Bos taurus].
Length = 628
Score = 80.9 bits (198), Expect = 2e-15
Identities = 64/219 (29%), Positives = 104/219 (47%)
Frame = +2
Query: 428 RDLDVVVVSVAGAFRKGKSFFLDFMLRYLYFQKEGGHSNWLGDPEEPLTGFSWRGGSDPE 607
RD V +++V G GK+F L+ +L+ L G +W P +G +R G++
Sbjct: 166 RDTPVCLLAVLGGPHSGKTFLLNHLLQGLP-GLASGEGSW---PRSAGSGQGFRWGANGL 221
Query: 608 TTGIQIWNEVFTVEKPGGKKVAVVLMDTQGAFDSQSTVKDCATIFALSTMTSSVQIYNLS 787
+ GI +W+ F + K G +KVAV L+DT + + + + AL++M SS QI S
Sbjct: 222 SRGIWMWSHPFLLGKEG-RKVAVFLVDTGDVMSPELSRETRTRLCALTSMLSSYQILTAS 280
Query: 788 QNIQEDDLQQLQLFTEYGRLAMDEIFQKPFQTLMFLVRDWSFPYEYNYGLQGGMSFLEKR 967
Q +++ DL+ L+ F + P Q L LVRD S P + G G +
Sbjct: 281 QELKDTDLEHLETFVHVAEVMGRHYGMVPIQHLDLLVRDSSHPSKAWQGHVGDV------ 334
Query: 968 LQVKEHQHEEIQNVRNHIHSCFSSVTCFLLPHPGLRVAT 1084
+Q ++ ++Q + C+LLP PG R A+
Sbjct: 335 IQKSSGKYPKVQGLLQG-----RRARCYLLPAPGRRWAS 368
>ref|XP_001249919.2| PREDICTED: guanylate binding protein 4-like [Bos taurus].
Length = 623
Score = 72.0 bits (175), Expect = 1e-12
Identities = 70/267 (26%), Positives = 114/267 (42%), Gaps = 22/267 (8%)
Frame = +2
Query: 440 VVVVSVAGAFRKGKSFFLDFMLRYLYFQKEGGHSNWLGDPEEPLTGFSWRGGSDPETTGI 619
VVVV++AG ++ GKS+ ++ + G ++ GF ET GI
Sbjct: 87 VVVVAIAGLYQTGKSYLMNHL---------AGQNH----------GFCLGSTVQSETKGI 127
Query: 620 QIWNEVFTVEKPGGKKVAVVLMDTQGAFDSQS-TVKDCATIFALSTMTSSVQIYNLSQNI 796
+W V P + +VL+DT+G D + K+ + IFAL+ + SS IYN I
Sbjct: 128 WMWY----VPHPSKENHTLVLLDTEGLGDMEKGDSKNDSWIFALAVLLSSTCIYNSMGTI 183
Query: 797 QEDDLQQLQLFTEYGRL-------AMDEI-----FQKPFQTLMFLVRDWSFPYEYNYGLQ 940
L+QL TE L D++ F + F ++ VRD+ E++
Sbjct: 184 NHQALEQLHYVTELTELIRIKSSPISDDVEDSVEFVRFFPDFVWTVRDFMLELEFDGNPI 243
Query: 941 GGMSFLEKRLQVKEHQHEEIQN---VRNHIHSCFSSVTCFLLPHPG------LRVATSPD 1093
+LE L++ ++ +IQN +R I F CF+ P L + PD
Sbjct: 244 TEDEYLENALKLIPEENHQIQNSNLLRECIKKFFPKWKCFIFDRPASNRKQLLHLEEIPD 303
Query: 1094 FDGKLKDIDSEFKEQLQILIPYVLNPA 1174
++D FK+Q ++ Y+ A
Sbjct: 304 -----NELDVNFKKQSKVFYSYIYTHA 325
>ref|NP_001095731.1| guanylate binding protein 4 [Bos taurus].
Length = 607
Score = 70.5 bits (171), Expect = 3e-12
Identities = 76/297 (25%), Positives = 123/297 (41%), Gaps = 21/297 (7%)
Frame = +2
Query: 347 VVMVQKDQHSFELEEKALASILLQDHIRDLDVVVVSVAGAFRKGKSFFLDFMLRYLYFQK 526
+ +V+ ++ + KAL + D I +VVV++AG +R GKS+ ++ +
Sbjct: 4 IYLVENWKNKLSVNPKALKIL---DQISQ-PLVVVAIAGLYRTGKSYLMNRL-------- 51
Query: 527 EGGHSNWLGDPEEPLTGFSWRGGSDPETTGIQIWNEVFTVEKPGGKKVAVVLMDTQGAFD 706
G ++ GF ET GI +W V P + +VL+DT+G +
Sbjct: 52 -AGQNH----------GFCLGSTVRSETKGIWMW----CVPHPSKENHTLVLLDTEGLGN 96
Query: 707 SQSTVKDCATIFALSTMTSSVQIYNLSQNIQEDDLQQLQLFTEYGRLA-------MDEI- 862
+ K+ IFAL+ + SS IYN +I + LQQL TE L DE+
Sbjct: 97 VEKDSKNDLWIFALAVLLSSTFIYNSMNSINDQALQQLHYVTELTELIRTKSSPNSDEVE 156
Query: 863 ----FQKPFQTLMFLVRDWSFPYEYNYGLQGGMSFLEKRLQVKEHQHEEIQNV---RNHI 1021
F F ++ VRD+ E + +LE L++ + +IQN R I
Sbjct: 157 DSAQFVSFFPDFIWTVRDFMLELELDGNSITEDEYLESALKLIPDEGPQIQNFNLPRECI 216
Query: 1022 HSCFSSVTCFLLPHPG------LRVATSPDFDGKLKDIDSEFKEQLQILIPYVLNPA 1174
F CF+ P L + PD +D +F++Q + Y+ A
Sbjct: 217 RKFFPKRKCFVFDRPASNKKQLLHLEEMPD-----NQLDEDFQKQSKDFCSYIYTHA 268
>ref|XP_001788656.1| PREDICTED: guanylate binding protein 4-like [Bos taurus].
Length = 607
Score = 70.5 bits (171), Expect = 3e-12
Identities = 76/297 (25%), Positives = 123/297 (41%), Gaps = 21/297 (7%)
Frame = +2
Query: 347 VVMVQKDQHSFELEEKALASILLQDHIRDLDVVVVSVAGAFRKGKSFFLDFMLRYLYFQK 526
+ +V+ ++ + KAL + D I +VVV++AG +R GKS+ ++ +
Sbjct: 4 IYLVENWKNKLSVNPKALKIL---DQISQ-PLVVVAIAGLYRTGKSYLMNRL-------- 51
Query: 527 EGGHSNWLGDPEEPLTGFSWRGGSDPETTGIQIWNEVFTVEKPGGKKVAVVLMDTQGAFD 706
G ++ GF ET GI +W V P + +VL+DT+G +
Sbjct: 52 -AGQNH----------GFCLGSTVRSETKGIWMW----CVPHPSKENHTLVLLDTEGLGN 96
Query: 707 SQSTVKDCATIFALSTMTSSVQIYNLSQNIQEDDLQQLQLFTEYGRLA-------MDEI- 862
+ K+ IFAL+ + SS IYN +I + LQQL TE L DE+
Sbjct: 97 VEKDSKNDLWIFALAVLLSSTFIYNSMNSINDQALQQLHYVTELTELIRTKSSPNSDEVE 156
Query: 863 ----FQKPFQTLMFLVRDWSFPYEYNYGLQGGMSFLEKRLQVKEHQHEEIQNV---RNHI 1021
F F ++ VRD+ E + +LE L++ + +IQN R I
Sbjct: 157 DSAQFVSFFPDFIWTVRDFMLELELDGNSITEDEYLESALKLIPDEGPQIQNFNLPRECI 216
Query: 1022 HSCFSSVTCFLLPHPG------LRVATSPDFDGKLKDIDSEFKEQLQILIPYVLNPA 1174
F CF+ P L + PD +D +F++Q + Y+ A
Sbjct: 217 RKFFPKRKCFVFDRPASNKKQLLHLEEMPD-----NQLDEDFQKQSKDFCSYIYTHA 268
>ref|XP_002686289.1| PREDICTED: guanylate binding protein 4-like [Bos taurus].
Length = 607
Score = 66.6 bits (161), Expect = 5e-11
Identities = 71/297 (23%), Positives = 122/297 (41%), Gaps = 21/297 (7%)
Frame = +2
Query: 347 VVMVQKDQHSFELEEKALASILLQDHIRDLDVVVVSVAGAFRKGKSFFLDFMLRYLYFQK 526
+ +V+ + + KAL + H +VVV++ G ++ GKS+ ++ +
Sbjct: 4 IYLVENRKSQLSVNPKALKIL----HQISQPLVVVAITGLYQTGKSYLMNRL-------- 51
Query: 527 EGGHSNWLGDPEEPLTGFSWRGGSDPETTGIQIWNEVFTVEKPGGKKVAVVLMDTQGAFD 706
G ++ GF ET GI +W V P + +VL+DT+G +
Sbjct: 52 -AGQNH----------GFRLGSTVRSETKGIWMW----CVPHPSKENHTLVLLDTEGLGN 96
Query: 707 SQSTVKDCATIFALSTMTSSVQIYNLSQNIQEDDLQQLQLFTEYGRL-------AMDEI- 862
+ K+ IFAL+ + SS IYN +I + LQQL TE L + D++
Sbjct: 97 VEKDSKNDLWIFALAVLLSSTLIYNSMNSINDQALQQLHYVTELTELIRSKSSPSSDKVE 156
Query: 863 ----FQKPFQTLMFLVRDWSFPYEYNYGLQGGMSFLEKRLQVKEHQHEEIQNV---RNHI 1021
F F ++ VRD+ + + +LE L++ + +IQN+ R I
Sbjct: 157 DSARFVSFFPDFIWTVRDFMLELKLDGSSITEDEYLENALKLIPDKGPQIQNLNLPRECI 216
Query: 1022 HSCFSSVTCFLLPHPG------LRVATSPDFDGKLKDIDSEFKEQLQILIPYVLNPA 1174
F CF+ P L + PD +D +F++Q + Y+ A
Sbjct: 217 RKFFPKRKCFVFDRPASNKKQLLHLEEMPD-----NQLDEDFQKQSKDFCSYIYTHA 268
>ref|NP_001179821.1| guanylate-binding protein 6 [Bos taurus].
Length = 627
Score = 65.5 bits (158), Expect = 1e-10
Identities = 72/293 (24%), Positives = 120/293 (40%), Gaps = 17/293 (5%)
Frame = +2
Query: 347 VVMVQKDQHSFELEEKALASILLQDHIRDLDVVVVSVAGAFRKGKSFFLDFMLRYLYFQK 526
+ +V+ + +KAL + ++I VVVV++ G +R GKS+ ++ +
Sbjct: 11 ICLVENKNAQLSVNQKALQIL---ENISQ-PVVVVAIVGLYRTGKSYLMNRL-------- 58
Query: 527 EGGHSNWLGDPEEPLTGFSWRGGSDPETTGIQIWNEVFTVEKPGGKKVAVVLMDTQGAFD 706
G ++ GF +T GI +W V P + +VL+DT+G D
Sbjct: 59 -AGQNH----------GFPLGSTVQSKTKGIWMW----CVPHPSKSEHILVLLDTEGLGD 103
Query: 707 -SQSTVKDCATIFALSTMTSSVQIYNLSQNIQEDDLQQLQLFTEYGRL-------AMDEI 862
+ K+ + IFAL+ + SS +YN I D L++L TE L MD +
Sbjct: 104 VEKGDSKNDSWIFALAVLLSSTFVYNSMNTINNDALEKLHYVTELTELIRAKSSPKMDGV 163
Query: 863 -----FQKPFQTLMFLVRDWSFPYEYNYGLQGGMSFLEKRLQVKEHQHEEIQNV---RNH 1018
F F ++ VRD++ + N +LE L++ + H ++ R
Sbjct: 164 RDSVEFASFFPDFIWTVRDFTLELKLNDDPITEDEYLENALKLIKGSHPNVKKANLPREC 223
Query: 1019 IHSCFSSVTCFLLPHPGLRVATSPDFDGKLK-DIDSEFKEQLQILIPYVLNPA 1174
I F CF+ P D L+ +D +FKEQ Y+ A
Sbjct: 224 IRHFFPKRKCFVFDRPVNDRELLAHLDEVLESQLDPKFKEQSDTFCSYIFTHA 276
>ref|XP_002686309.1| PREDICTED: guanylate binding protein family, member 6-like [Bos
taurus].
Length = 627
Score = 65.5 bits (158), Expect = 1e-10
Identities = 72/293 (24%), Positives = 120/293 (40%), Gaps = 17/293 (5%)
Frame = +2
Query: 347 VVMVQKDQHSFELEEKALASILLQDHIRDLDVVVVSVAGAFRKGKSFFLDFMLRYLYFQK 526
+ +V+ + +KAL + ++I VVVV++ G +R GKS+ ++ +
Sbjct: 11 ICLVENKNAQLSVNQKALQIL---ENISQ-PVVVVAIVGLYRTGKSYLMNRL-------- 58
Query: 527 EGGHSNWLGDPEEPLTGFSWRGGSDPETTGIQIWNEVFTVEKPGGKKVAVVLMDTQGAFD 706
G ++ GF +T GI +W V P + +VL+DT+G D
Sbjct: 59 -AGQNH----------GFPLGSTVQSKTKGIWMW----CVPHPSKSEHILVLLDTEGLGD 103
Query: 707 -SQSTVKDCATIFALSTMTSSVQIYNLSQNIQEDDLQQLQLFTEYGRL-------AMDEI 862
+ K+ + IFAL+ + SS +YN I D L++L TE L MD +
Sbjct: 104 VEKGDSKNDSWIFALAVLLSSTFVYNSMNTINNDALEKLHYVTELTELIRAKSSPKMDGV 163
Query: 863 -----FQKPFQTLMFLVRDWSFPYEYNYGLQGGMSFLEKRLQVKEHQHEEIQNV---RNH 1018
F F ++ VRD++ + N +LE L++ + H ++ R
Sbjct: 164 RDSVEFASFFPDFIWTVRDFTLELKLNDDPITEDEYLENALKLIKGSHPNVKKANLPREC 223
Query: 1019 IHSCFSSVTCFLLPHPGLRVATSPDFDGKLK-DIDSEFKEQLQILIPYVLNPA 1174
I F CF+ P D L+ +D +FKEQ Y+ A
Sbjct: 224 IRHFFPKRKCFVFDRPVNDRELLAHLDEVLESQLDPKFKEQSDTFCSYIFTHA 276
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 52,040,846
Number of extensions: 1537772
Number of successful extensions: 8535
Number of sequences better than 1.0e-05: 31
Number of HSP's gapped: 8312
Number of HSP's successfully gapped: 31
Length of query: 435
Length of database: 17,681,374
Length adjustment: 105
Effective length of query: 330
Effective length of database: 14,207,134
Effective search space: 4688354220
Effective search space used: 4688354220
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003950
(1305 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_533252.2| PREDICTED: similar to atlastin-like [Canis fami... 610 e-175
Alignment gi|XP_851410.1| PREDICTED: similar to ADP-ribosylation factor-l... 484 e-137
Alignment gi|XP_532937.2| PREDICTED: similar to ADP-ribosylation factor-l... 484 e-137
Alignment gi|XP_863584.1| PREDICTED: similar to ADP-ribosylation factor-l... 484 e-137
Alignment gi|XP_863564.1| PREDICTED: similar to ADP-ribosylation factor-l... 484 e-137
Alignment gi|XP_863862.1| PREDICTED: similar to atlastin isoform 4 [Canis... 459 e-129
Alignment gi|XP_537440.2| PREDICTED: similar to atlastin; guanylate-bindi... 459 e-129
Alignment gi|XP_851462.1| PREDICTED: similar to atlastin; guanylate-bindi... 459 e-129
Alignment gi|XP_863634.1| PREDICTED: similar to ADP-ribosylation factor-l... 325 8e-89
Alignment gi|XP_863841.1| PREDICTED: similar to atlastin; guanylate-bindi... 208 8e-54
>ref|XP_533252.2| PREDICTED: similar to atlastin-like [Canis familiaris].
Length = 523
Score = 610 bits (1574), Expect = e-175
Identities = 304/330 (92%), Positives = 314/330 (95%), Gaps = 1/330 (0%)
Frame = +2
Query: 317 MEGGKPGPVQVVMVQKDQHSFELEEKALASILLQDHIRDLDVVVVSVAGAFRKGKSFFLD 496
ME KPGPVQVV+VQKDQHS+ELEEKALASILLQDHIRDLDVVVVSVAGAFRKGKSFFLD
Sbjct: 1 MESRKPGPVQVVLVQKDQHSYELEEKALASILLQDHIRDLDVVVVSVAGAFRKGKSFFLD 60
Query: 497 FMLRYLYFQKEGGHSNWLGDPEEPLTGFSWRGGSDPETTGIQIWNEVFTVEKPGGKKVAV 676
FMLRYLYFQKEGGHSNWLGD EEPLTGFSWRGGSDPETTGIQIW+EVFTVEKPGGKKVAV
Sbjct: 61 FMLRYLYFQKEGGHSNWLGDSEEPLTGFSWRGGSDPETTGIQIWSEVFTVEKPGGKKVAV 120
Query: 677 VLMDTQGAFDSQSTVKDCATIFALSTMTSSVQIYNLSQNIQEDDLQQLQLFTEYGRLAMD 856
VLMDTQGAFDSQSTVKDCATIFALSTMTSSVQIYNLSQNIQEDDLQQLQLFTEYGRLAMD
Sbjct: 121 VLMDTQGAFDSQSTVKDCATIFALSTMTSSVQIYNLSQNIQEDDLQQLQLFTEYGRLAMD 180
Query: 857 EIFQKPFQTLMFLVRDWSFPYEYNYGLQGGMSFLEKRLQVKEHQHEEIQNVRNHIHSCFS 1036
EIFQKPFQTLMFLVRDWSFPYEYNYGLQGGMSFL+KRLQVKEHQHEEIQNVRNHIHSCFS
Sbjct: 181 EIFQKPFQTLMFLVRDWSFPYEYNYGLQGGMSFLDKRLQVKEHQHEEIQNVRNHIHSCFS 240
Query: 1037 SVTCFLLPHPGLRVATSPDFDGKLKDIDSEFKEQLQILIPYVLNPANLMEKEINGSKVTC 1216
+VTCFLLPHPGL+VATSPDFDGKLKDI SEFKEQLQ LIP+VLNPANLMEKEINGSKVTC
Sbjct: 241 NVTCFLLPHPGLQVATSPDFDGKLKDIASEFKEQLQTLIPFVLNPANLMEKEINGSKVTC 300
Query: 1217 RGLLEYFRHTLKSTR-ERSASPPVMLQATA 1303
RGLLEYF+ +K + E P MLQATA
Sbjct: 301 RGLLEYFKAYIKIYQGEDLPHPKSMLQATA 330
>ref|XP_851410.1| PREDICTED: similar to ADP-ribosylation factor-like 6 interacting
protein 2 isoform 3 [Canis familiaris].
Length = 583
Score = 484 bits (1246), Expect = e-137
Identities = 230/326 (70%), Positives = 280/326 (85%), Gaps = 1/326 (0%)
Frame = +2
Query: 329 KPGPVQVVMVQKDQHSFELEEKALASILLQDHIRDLDVVVVSVAGAFRKGKSFFLDFMLR 508
KP PVQ+V+ +D H+FEL+E+AL ILLQ+HIRDL++VVVSVAGAFRKGKSF LDFMLR
Sbjct: 57 KPCPVQIVLAHEDDHNFELDEEALEQILLQEHIRDLNIVVVSVAGAFRKGKSFLLDFMLR 116
Query: 509 YLYFQKEGGHSNWLGDPEEPLTGFSWRGGSDPETTGIQIWNEVFTVEKPGGKKVAVVLMD 688
Y+Y + +W+G EPLTGF+WRGG + ETTGIQ+WNEVF +++P G KVAV+LMD
Sbjct: 117 YMYNKDS---QSWIGGNNEPLTGFTWRGGCERETTGIQVWNEVFVIDRPNGTKVAVLLMD 173
Query: 689 TQGAFDSQSTVKDCATIFALSTMTSSVQIYNLSQNIQEDDLQQLQLFTEYGRLAMDEIFQ 868
TQGAFDSQST+KDCAT+FALSTMTSSVQ+YNLSQNIQEDDLQ LQLFTEYGRLAM+EI+Q
Sbjct: 174 TQGAFDSQSTIKDCATVFALSTMTSSVQVYNLSQNIQEDDLQHLQLFTEYGRLAMEEIYQ 233
Query: 869 KPFQTLMFLVRDWSFPYEYNYGLQGGMSFLEKRLQVKEHQHEEIQNVRNHIHSCFSSVTC 1048
KPFQTLMFL+RDWS+PYE++YGL+GG FLEKRLQVK++QHEE+QNVR HIH+CFS++ C
Sbjct: 234 KPFQTLMFLIRDWSYPYEHSYGLEGGKQFLEKRLQVKQNQHEELQNVRKHIHNCFSNLGC 293
Query: 1049 FLLPHPGLRVATSPDFDGKLKDIDSEFKEQLQILIPYVLNPANLMEKEINGSKVTCRGLL 1228
FLLPHPGL+VAT+P FDG+LKDID +FK +L+ L+P +L P NL+EKEI+GSKVTCR L+
Sbjct: 294 FLLPHPGLKVATNPSFDGRLKDIDEDFKRELRNLVPLLLAPENLVEKEISGSKVTCRDLV 353
Query: 1229 EYFRHTLKSTR-ERSASPPVMLQATA 1303
EYF+ +K + E P MLQATA
Sbjct: 354 EYFKAYIKIYQGEELPHPKSMLQATA 379
>ref|XP_532937.2| PREDICTED: similar to ADP-ribosylation factor-like 6 interacting
protein 2 isoform 2 [Canis familiaris].
Length = 579
Score = 484 bits (1246), Expect = e-137
Identities = 230/326 (70%), Positives = 280/326 (85%), Gaps = 1/326 (0%)
Frame = +2
Query: 329 KPGPVQVVMVQKDQHSFELEEKALASILLQDHIRDLDVVVVSVAGAFRKGKSFFLDFMLR 508
KP PVQ+V+ +D H+FEL+E+AL ILLQ+HIRDL++VVVSVAGAFRKGKSF LDFMLR
Sbjct: 57 KPCPVQIVLAHEDDHNFELDEEALEQILLQEHIRDLNIVVVSVAGAFRKGKSFLLDFMLR 116
Query: 509 YLYFQKEGGHSNWLGDPEEPLTGFSWRGGSDPETTGIQIWNEVFTVEKPGGKKVAVVLMD 688
Y+Y + +W+G EPLTGF+WRGG + ETTGIQ+WNEVF +++P G KVAV+LMD
Sbjct: 117 YMYNKDS---QSWIGGNNEPLTGFTWRGGCERETTGIQVWNEVFVIDRPNGTKVAVLLMD 173
Query: 689 TQGAFDSQSTVKDCATIFALSTMTSSVQIYNLSQNIQEDDLQQLQLFTEYGRLAMDEIFQ 868
TQGAFDSQST+KDCAT+FALSTMTSSVQ+YNLSQNIQEDDLQ LQLFTEYGRLAM+EI+Q
Sbjct: 174 TQGAFDSQSTIKDCATVFALSTMTSSVQVYNLSQNIQEDDLQHLQLFTEYGRLAMEEIYQ 233
Query: 869 KPFQTLMFLVRDWSFPYEYNYGLQGGMSFLEKRLQVKEHQHEEIQNVRNHIHSCFSSVTC 1048
KPFQTLMFL+RDWS+PYE++YGL+GG FLEKRLQVK++QHEE+QNVR HIH+CFS++ C
Sbjct: 234 KPFQTLMFLIRDWSYPYEHSYGLEGGKQFLEKRLQVKQNQHEELQNVRKHIHNCFSNLGC 293
Query: 1049 FLLPHPGLRVATSPDFDGKLKDIDSEFKEQLQILIPYVLNPANLMEKEINGSKVTCRGLL 1228
FLLPHPGL+VAT+P FDG+LKDID +FK +L+ L+P +L P NL+EKEI+GSKVTCR L+
Sbjct: 294 FLLPHPGLKVATNPSFDGRLKDIDEDFKRELRNLVPLLLAPENLVEKEISGSKVTCRDLV 353
Query: 1229 EYFRHTLKSTR-ERSASPPVMLQATA 1303
EYF+ +K + E P MLQATA
Sbjct: 354 EYFKAYIKIYQGEELPHPKSMLQATA 379
>ref|XP_863584.1| PREDICTED: similar to ADP-ribosylation factor-like 6 interacting
protein 2 isoform 5 [Canis familiaris].
Length = 553
Score = 484 bits (1246), Expect = e-137
Identities = 230/326 (70%), Positives = 280/326 (85%), Gaps = 1/326 (0%)
Frame = +2
Query: 329 KPGPVQVVMVQKDQHSFELEEKALASILLQDHIRDLDVVVVSVAGAFRKGKSFFLDFMLR 508
KP PVQ+V+ +D H+FEL+E+AL ILLQ+HIRDL++VVVSVAGAFRKGKSF LDFMLR
Sbjct: 57 KPCPVQIVLAHEDDHNFELDEEALEQILLQEHIRDLNIVVVSVAGAFRKGKSFLLDFMLR 116
Query: 509 YLYFQKEGGHSNWLGDPEEPLTGFSWRGGSDPETTGIQIWNEVFTVEKPGGKKVAVVLMD 688
Y+Y + +W+G EPLTGF+WRGG + ETTGIQ+WNEVF +++P G KVAV+LMD
Sbjct: 117 YMYNKDS---QSWIGGNNEPLTGFTWRGGCERETTGIQVWNEVFVIDRPNGTKVAVLLMD 173
Query: 689 TQGAFDSQSTVKDCATIFALSTMTSSVQIYNLSQNIQEDDLQQLQLFTEYGRLAMDEIFQ 868
TQGAFDSQST+KDCAT+FALSTMTSSVQ+YNLSQNIQEDDLQ LQLFTEYGRLAM+EI+Q
Sbjct: 174 TQGAFDSQSTIKDCATVFALSTMTSSVQVYNLSQNIQEDDLQHLQLFTEYGRLAMEEIYQ 233
Query: 869 KPFQTLMFLVRDWSFPYEYNYGLQGGMSFLEKRLQVKEHQHEEIQNVRNHIHSCFSSVTC 1048
KPFQTLMFL+RDWS+PYE++YGL+GG FLEKRLQVK++QHEE+QNVR HIH+CFS++ C
Sbjct: 234 KPFQTLMFLIRDWSYPYEHSYGLEGGKQFLEKRLQVKQNQHEELQNVRKHIHNCFSNLGC 293
Query: 1049 FLLPHPGLRVATSPDFDGKLKDIDSEFKEQLQILIPYVLNPANLMEKEINGSKVTCRGLL 1228
FLLPHPGL+VAT+P FDG+LKDID +FK +L+ L+P +L P NL+EKEI+GSKVTCR L+
Sbjct: 294 FLLPHPGLKVATNPSFDGRLKDIDEDFKRELRNLVPLLLAPENLVEKEISGSKVTCRDLV 353
Query: 1229 EYFRHTLKSTR-ERSASPPVMLQATA 1303
EYF+ +K + E P MLQATA
Sbjct: 354 EYFKAYIKIYQGEELPHPKSMLQATA 379
>ref|XP_863564.1| PREDICTED: similar to ADP-ribosylation factor-like 6 interacting
protein 2 isoform 4 [Canis familiaris].
Length = 584
Score = 484 bits (1246), Expect = e-137
Identities = 230/326 (70%), Positives = 280/326 (85%), Gaps = 1/326 (0%)
Frame = +2
Query: 329 KPGPVQVVMVQKDQHSFELEEKALASILLQDHIRDLDVVVVSVAGAFRKGKSFFLDFMLR 508
KP PVQ+V+ +D H+FEL+E+AL ILLQ+HIRDL++VVVSVAGAFRKGKSF LDFMLR
Sbjct: 57 KPCPVQIVLAHEDDHNFELDEEALEQILLQEHIRDLNIVVVSVAGAFRKGKSFLLDFMLR 116
Query: 509 YLYFQKEGGHSNWLGDPEEPLTGFSWRGGSDPETTGIQIWNEVFTVEKPGGKKVAVVLMD 688
Y+Y + +W+G EPLTGF+WRGG + ETTGIQ+WNEVF +++P G KVAV+LMD
Sbjct: 117 YMYNKDS---QSWIGGNNEPLTGFTWRGGCERETTGIQVWNEVFVIDRPNGTKVAVLLMD 173
Query: 689 TQGAFDSQSTVKDCATIFALSTMTSSVQIYNLSQNIQEDDLQQLQLFTEYGRLAMDEIFQ 868
TQGAFDSQST+KDCAT+FALSTMTSSVQ+YNLSQNIQEDDLQ LQLFTEYGRLAM+EI+Q
Sbjct: 174 TQGAFDSQSTIKDCATVFALSTMTSSVQVYNLSQNIQEDDLQHLQLFTEYGRLAMEEIYQ 233
Query: 869 KPFQTLMFLVRDWSFPYEYNYGLQGGMSFLEKRLQVKEHQHEEIQNVRNHIHSCFSSVTC 1048
KPFQTLMFL+RDWS+PYE++YGL+GG FLEKRLQVK++QHEE+QNVR HIH+CFS++ C
Sbjct: 234 KPFQTLMFLIRDWSYPYEHSYGLEGGKQFLEKRLQVKQNQHEELQNVRKHIHNCFSNLGC 293
Query: 1049 FLLPHPGLRVATSPDFDGKLKDIDSEFKEQLQILIPYVLNPANLMEKEINGSKVTCRGLL 1228
FLLPHPGL+VAT+P FDG+LKDID +FK +L+ L+P +L P NL+EKEI+GSKVTCR L+
Sbjct: 294 FLLPHPGLKVATNPSFDGRLKDIDEDFKRELRNLVPLLLAPENLVEKEISGSKVTCRDLV 353
Query: 1229 EYFRHTLKSTR-ERSASPPVMLQATA 1303
EYF+ +K + E P MLQATA
Sbjct: 354 EYFKAYIKIYQGEELPHPKSMLQATA 379
>ref|XP_863862.1| PREDICTED: similar to atlastin isoform 4 [Canis familiaris].
Length = 547
Score = 459 bits (1182), Expect = e-129
Identities = 225/326 (69%), Positives = 274/326 (84%), Gaps = 1/326 (0%)
Frame = +2
Query: 329 KPGPVQVVMVQKDQHSFELEEKALASILLQDHIRDLDVVVVSVAGAFRKGKSFFLDFMLR 508
K GPVQV++V KD HSFEL+E AL ILL + +RD +VV VSVAGAFRKGKSF +DFMLR
Sbjct: 31 KAGPVQVLIV-KDDHSFELDETALNRILLSEAVRDKEVVAVSVAGAFRKGKSFLMDFMLR 89
Query: 509 YLYFQKEGGHSNWLGDPEEPLTGFSWRGGSDPETTGIQIWNEVFTVEKPGGKKVAVVLMD 688
Y+Y Q+ +W+GD EPLTGFSWRGGS+ ETTGIQIW+EVF + KP GKKVAV+LMD
Sbjct: 90 YMYNQES---VDWVGDYNEPLTGFSWRGGSERETTGIQIWSEVFLINKPDGKKVAVLLMD 146
Query: 689 TQGAFDSQSTVKDCATIFALSTMTSSVQIYNLSQNIQEDDLQQLQLFTEYGRLAMDEIFQ 868
TQG FDSQST++D AT+FALSTM SS+Q+YNLSQN+QEDDLQ LQLFTEYGRLAM+EIF
Sbjct: 147 TQGTFDSQSTLRDSATVFALSTMISSIQVYNLSQNVQEDDLQHLQLFTEYGRLAMEEIFL 206
Query: 869 KPFQTLMFLVRDWSFPYEYNYGLQGGMSFLEKRLQVKEHQHEEIQNVRNHIHSCFSSVTC 1048
KPFQ+L+FLVRDWSFPYE++YG +GG FLEKRL+V +QHEE+QNVR HIHSCF+ ++C
Sbjct: 207 KPFQSLIFLVRDWSFPYEFSYGAEGGSKFLEKRLKVSGNQHEELQNVRKHIHSCFTKISC 266
Query: 1049 FLLPHPGLRVATSPDFDGKLKDIDSEFKEQLQILIPYVLNPANLMEKEINGSKVTCRGLL 1228
FLLPHPGL+VAT+P+FDGKLK+ID EF + L+ILIP++L+P +L KEING+K+TCRGL+
Sbjct: 267 FLLPHPGLKVATNPNFDGKLKEIDDEFIKNLKILIPWLLSPESLDIKEINGNKITCRGLV 326
Query: 1229 EYFRHTLKSTR-ERSASPPVMLQATA 1303
EYF+ +K + E P MLQATA
Sbjct: 327 EYFKAYIKIYQGEELPHPKSMLQATA 352
>ref|XP_537440.2| PREDICTED: similar to atlastin; guanylate-binding protein 3 isoform 1
[Canis familiaris].
Length = 553
Score = 459 bits (1182), Expect = e-129
Identities = 225/326 (69%), Positives = 274/326 (84%), Gaps = 1/326 (0%)
Frame = +2
Query: 329 KPGPVQVVMVQKDQHSFELEEKALASILLQDHIRDLDVVVVSVAGAFRKGKSFFLDFMLR 508
K GPVQV++V KD HSFEL+E AL ILL + +RD +VV VSVAGAFRKGKSF +DFMLR
Sbjct: 31 KAGPVQVLIV-KDDHSFELDETALNRILLSEAVRDKEVVAVSVAGAFRKGKSFLMDFMLR 89
Query: 509 YLYFQKEGGHSNWLGDPEEPLTGFSWRGGSDPETTGIQIWNEVFTVEKPGGKKVAVVLMD 688
Y+Y Q+ +W+GD EPLTGFSWRGGS+ ETTGIQIW+EVF + KP GKKVAV+LMD
Sbjct: 90 YMYNQES---VDWVGDYNEPLTGFSWRGGSERETTGIQIWSEVFLINKPDGKKVAVLLMD 146
Query: 689 TQGAFDSQSTVKDCATIFALSTMTSSVQIYNLSQNIQEDDLQQLQLFTEYGRLAMDEIFQ 868
TQG FDSQST++D AT+FALSTM SS+Q+YNLSQN+QEDDLQ LQLFTEYGRLAM+EIF
Sbjct: 147 TQGTFDSQSTLRDSATVFALSTMISSIQVYNLSQNVQEDDLQHLQLFTEYGRLAMEEIFL 206
Query: 869 KPFQTLMFLVRDWSFPYEYNYGLQGGMSFLEKRLQVKEHQHEEIQNVRNHIHSCFSSVTC 1048
KPFQ+L+FLVRDWSFPYE++YG +GG FLEKRL+V +QHEE+QNVR HIHSCF+ ++C
Sbjct: 207 KPFQSLIFLVRDWSFPYEFSYGAEGGSKFLEKRLKVSGNQHEELQNVRKHIHSCFTKISC 266
Query: 1049 FLLPHPGLRVATSPDFDGKLKDIDSEFKEQLQILIPYVLNPANLMEKEINGSKVTCRGLL 1228
FLLPHPGL+VAT+P+FDGKLK+ID EF + L+ILIP++L+P +L KEING+K+TCRGL+
Sbjct: 267 FLLPHPGLKVATNPNFDGKLKEIDDEFIKNLKILIPWLLSPESLDIKEINGNKITCRGLV 326
Query: 1229 EYFRHTLKSTR-ERSASPPVMLQATA 1303
EYF+ +K + E P MLQATA
Sbjct: 327 EYFKAYIKIYQGEELPHPKSMLQATA 352
>ref|XP_851462.1| PREDICTED: similar to atlastin; guanylate-binding protein 3 isoform 2
[Canis familiaris].
Length = 558
Score = 459 bits (1182), Expect = e-129
Identities = 225/326 (69%), Positives = 274/326 (84%), Gaps = 1/326 (0%)
Frame = +2
Query: 329 KPGPVQVVMVQKDQHSFELEEKALASILLQDHIRDLDVVVVSVAGAFRKGKSFFLDFMLR 508
K GPVQV++V KD HSFEL+E AL ILL + +RD +VV VSVAGAFRKGKSF +DFMLR
Sbjct: 31 KAGPVQVLIV-KDDHSFELDETALNRILLSEAVRDKEVVAVSVAGAFRKGKSFLMDFMLR 89
Query: 509 YLYFQKEGGHSNWLGDPEEPLTGFSWRGGSDPETTGIQIWNEVFTVEKPGGKKVAVVLMD 688
Y+Y Q+ +W+GD EPLTGFSWRGGS+ ETTGIQIW+EVF + KP GKKVAV+LMD
Sbjct: 90 YMYNQES---VDWVGDYNEPLTGFSWRGGSERETTGIQIWSEVFLINKPDGKKVAVLLMD 146
Query: 689 TQGAFDSQSTVKDCATIFALSTMTSSVQIYNLSQNIQEDDLQQLQLFTEYGRLAMDEIFQ 868
TQG FDSQST++D AT+FALSTM SS+Q+YNLSQN+QEDDLQ LQLFTEYGRLAM+EIF
Sbjct: 147 TQGTFDSQSTLRDSATVFALSTMISSIQVYNLSQNVQEDDLQHLQLFTEYGRLAMEEIFL 206
Query: 869 KPFQTLMFLVRDWSFPYEYNYGLQGGMSFLEKRLQVKEHQHEEIQNVRNHIHSCFSSVTC 1048
KPFQ+L+FLVRDWSFPYE++YG +GG FLEKRL+V +QHEE+QNVR HIHSCF+ ++C
Sbjct: 207 KPFQSLIFLVRDWSFPYEFSYGAEGGSKFLEKRLKVSGNQHEELQNVRKHIHSCFTKISC 266
Query: 1049 FLLPHPGLRVATSPDFDGKLKDIDSEFKEQLQILIPYVLNPANLMEKEINGSKVTCRGLL 1228
FLLPHPGL+VAT+P+FDGKLK+ID EF + L+ILIP++L+P +L KEING+K+TCRGL+
Sbjct: 267 FLLPHPGLKVATNPNFDGKLKEIDDEFIKNLKILIPWLLSPESLDIKEINGNKITCRGLV 326
Query: 1229 EYFRHTLKSTR-ERSASPPVMLQATA 1303
EYF+ +K + E P MLQATA
Sbjct: 327 EYFKAYIKIYQGEELPHPKSMLQATA 352
>ref|XP_863634.1| PREDICTED: similar to ADP-ribosylation factor-like 6 interacting
protein 2 isoform 7 [Canis familiaris].
Length = 412
Score = 325 bits (832), Expect = 8e-89
Identities = 154/208 (74%), Positives = 184/208 (88%), Gaps = 1/208 (0%)
Frame = +2
Query: 683 MDTQGAFDSQSTVKDCATIFALSTMTSSVQIYNLSQNIQEDDLQQLQLFTEYGRLAMDEI 862
MDTQGAFDSQST+KDCAT+FALSTMTSSVQ+YNLSQNIQEDDLQ LQLFTEYGRLAM+EI
Sbjct: 1 MDTQGAFDSQSTIKDCATVFALSTMTSSVQVYNLSQNIQEDDLQHLQLFTEYGRLAMEEI 60
Query: 863 FQKPFQTLMFLVRDWSFPYEYNYGLQGGMSFLEKRLQVKEHQHEEIQNVRNHIHSCFSSV 1042
+QKPFQTLMFL+RDWS+PYE++YGL+GG FLEKRLQVK++QHEE+QNVR HIH+CFS++
Sbjct: 61 YQKPFQTLMFLIRDWSYPYEHSYGLEGGKQFLEKRLQVKQNQHEELQNVRKHIHNCFSNL 120
Query: 1043 TCFLLPHPGLRVATSPDFDGKLKDIDSEFKEQLQILIPYVLNPANLMEKEINGSKVTCRG 1222
CFLLPHPGL+VAT+P FDG+LKDID +FK +L+ L+P +L P NL+EKEI+GSKVTCR
Sbjct: 121 GCFLLPHPGLKVATNPSFDGRLKDIDEDFKRELRNLVPLLLAPENLVEKEISGSKVTCRD 180
Query: 1223 LLEYFRHTLKSTR-ERSASPPVMLQATA 1303
L+EYF+ +K + E P MLQATA
Sbjct: 181 LVEYFKAYIKIYQGEELPHPKSMLQATA 208
>ref|XP_863841.1| PREDICTED: similar to atlastin; guanylate-binding protein 3 isoform
3 [Canis familiaris].
Length = 182
Score = 208 bits (530), Expect = 8e-54
Identities = 104/151 (68%), Positives = 125/151 (82%)
Frame = +2
Query: 329 KPGPVQVVMVQKDQHSFELEEKALASILLQDHIRDLDVVVVSVAGAFRKGKSFFLDFMLR 508
K GPVQV++V KD HSFEL+E AL ILL + +RD +VV VSVAGAFRKGKSF +DFMLR
Sbjct: 31 KAGPVQVLIV-KDDHSFELDETALNRILLSEAVRDKEVVAVSVAGAFRKGKSFLMDFMLR 89
Query: 509 YLYFQKEGGHSNWLGDPEEPLTGFSWRGGSDPETTGIQIWNEVFTVEKPGGKKVAVVLMD 688
Y+Y Q+ +W+GD EPLTGFSWRGGS+ ETTGIQIW+EVF + KP GKKVAV+LMD
Sbjct: 90 YMYNQES---VDWVGDYNEPLTGFSWRGGSERETTGIQIWSEVFLINKPDGKKVAVLLMD 146
Query: 689 TQGAFDSQSTVKDCATIFALSTMTSSVQIYN 781
TQG FDSQST++D AT+FALSTM SS+Q++N
Sbjct: 147 TQGTFDSQSTLRDSATVFALSTMISSIQVWN 177
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 54,565,667
Number of extensions: 1606828
Number of successful extensions: 8972
Number of sequences better than 1.0e-05: 15
Number of HSP's gapped: 8702
Number of HSP's successfully gapped: 15
Length of query: 435
Length of database: 18,874,504
Length adjustment: 106
Effective length of query: 329
Effective length of database: 15,340,888
Effective search space: 5047152152
Effective search space used: 5047152152
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003950
(1305 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_056274.3| atlastin-3 [Homo sapiens]. 604 e-173
Alignment gi|NP_071769.2| atlastin-2 isoform 1 [Homo sapiens]. 484 e-137
Alignment gi|NP_001129145.1| atlastin-2 isoform 2 [Homo sapiens]. 484 e-137
Alignment gi|NP_001121185.1| atlastin-1 isoform b [Homo sapiens]. 457 e-128
Alignment gi|NP_853629.2| atlastin-1 isoform b [Homo sapiens]. 457 e-128
Alignment gi|NP_056999.2| atlastin-1 isoform a [Homo sapiens]. 457 e-128
Alignment gi|NP_009079.2| RING finger protein 112 [Homo sapiens]. 86 6e-17
Alignment gi|NP_940862.2| guanylate-binding protein 6 [Homo sapiens]. 64 2e-10
Alignment gi|NP_004111.2| interferon-induced guanylate-binding protein 2 ... 64 3e-10
Alignment gi|NP_001127958.1| guanylate-binding protein 5 [Homo sapiens]. 62 1e-09
>ref|NP_056274.3| atlastin-3 [Homo sapiens].
Length = 541
Score = 604 bits (1558), Expect = e-173
Identities = 303/348 (87%), Positives = 314/348 (90%), Gaps = 1/348 (0%)
Frame = +2
Query: 263 MLSPQXXXXXXXXXXXXXMEGGKPGPVQVVMVQKDQHSFELEEKALASILLQDHIRDLDV 442
MLSPQ ME KPGPVQVV+VQKDQHSFEL+EKALASILLQDHIRDLDV
Sbjct: 1 MLSPQRVAAAASRGADDAMESSKPGPVQVVLVQKDQHSFELDEKALASILLQDHIRDLDV 60
Query: 443 VVVSVAGAFRKGKSFFLDFMLRYLYFQKEGGHSNWLGDPEEPLTGFSWRGGSDPETTGIQ 622
VVVSVAGAFRKGKSF LDFMLRYLY QKE GHSNWLGDPEEPLTGFSWRGGSDPETTGIQ
Sbjct: 61 VVVSVAGAFRKGKSFILDFMLRYLYSQKESGHSNWLGDPEEPLTGFSWRGGSDPETTGIQ 120
Query: 623 IWNEVFTVEKPGGKKVAVVLMDTQGAFDSQSTVKDCATIFALSTMTSSVQIYNLSQNIQE 802
IW+EVFTVEKPGGKKVAVVLMDTQGAFDSQSTVKDCATIFALSTMTSSVQIYNLSQNIQE
Sbjct: 121 IWSEVFTVEKPGGKKVAVVLMDTQGAFDSQSTVKDCATIFALSTMTSSVQIYNLSQNIQE 180
Query: 803 DDLQQLQLFTEYGRLAMDEIFQKPFQTLMFLVRDWSFPYEYNYGLQGGMSFLEKRLQVKE 982
DDLQQLQLFTEYGRLAMDEIFQKPFQTLMFLVRDWSFPYEY+YGLQGGM+FL+KRLQVKE
Sbjct: 181 DDLQQLQLFTEYGRLAMDEIFQKPFQTLMFLVRDWSFPYEYSYGLQGGMAFLDKRLQVKE 240
Query: 983 HQHEEIQNVRNHIHSCFSSVTCFLLPHPGLRVATSPDFDGKLKDIDSEFKEQLQILIPYV 1162
HQHEEIQNVRNHIHSCFS VTCFLLPHPGL+VATSPDFDGKLKDI EFKEQLQ LIPYV
Sbjct: 241 HQHEEIQNVRNHIHSCFSDVTCFLLPHPGLQVATSPDFDGKLKDIAGEFKEQLQALIPYV 300
Query: 1163 LNPANLMEKEINGSKVTCRGLLEYFRHTLKSTR-ERSASPPVMLQATA 1303
LNP+ LMEKEINGSKVTCRGLLEYF+ +K + E P MLQATA
Sbjct: 301 LNPSKLMEKEINGSKVTCRGLLEYFKAYIKIYQGEDLPHPKSMLQATA 348
>ref|NP_071769.2| atlastin-2 isoform 1 [Homo sapiens].
Length = 579
Score = 484 bits (1246), Expect = e-137
Identities = 230/326 (70%), Positives = 280/326 (85%), Gaps = 1/326 (0%)
Frame = +2
Query: 329 KPGPVQVVMVQKDQHSFELEEKALASILLQDHIRDLDVVVVSVAGAFRKGKSFFLDFMLR 508
KP PVQ+V+ +D H+FEL+E+AL ILLQ+HIRDL++VVVSVAGAFRKGKSF LDFMLR
Sbjct: 57 KPCPVQIVLAHEDDHNFELDEEALEQILLQEHIRDLNIVVVSVAGAFRKGKSFLLDFMLR 116
Query: 509 YLYFQKEGGHSNWLGDPEEPLTGFSWRGGSDPETTGIQIWNEVFTVEKPGGKKVAVVLMD 688
Y+Y + +W+G EPLTGF+WRGG + ETTGIQ+WNEVF +++P G KVAV+LMD
Sbjct: 117 YMYNKDS---QSWIGGNNEPLTGFTWRGGCERETTGIQVWNEVFVIDRPNGTKVAVLLMD 173
Query: 689 TQGAFDSQSTVKDCATIFALSTMTSSVQIYNLSQNIQEDDLQQLQLFTEYGRLAMDEIFQ 868
TQGAFDSQST+KDCAT+FALSTMTSSVQ+YNLSQNIQEDDLQ LQLFTEYGRLAM+EI+Q
Sbjct: 174 TQGAFDSQSTIKDCATVFALSTMTSSVQVYNLSQNIQEDDLQHLQLFTEYGRLAMEEIYQ 233
Query: 869 KPFQTLMFLVRDWSFPYEYNYGLQGGMSFLEKRLQVKEHQHEEIQNVRNHIHSCFSSVTC 1048
KPFQTLMFL+RDWS+PYE++YGL+GG FLEKRLQVK++QHEE+QNVR HIH+CFS++ C
Sbjct: 234 KPFQTLMFLIRDWSYPYEHSYGLEGGKQFLEKRLQVKQNQHEELQNVRKHIHNCFSNLGC 293
Query: 1049 FLLPHPGLRVATSPDFDGKLKDIDSEFKEQLQILIPYVLNPANLMEKEINGSKVTCRGLL 1228
FLLPHPGL+VAT+P FDG+LKDID +FK +L+ L+P +L P NL+EKEI+GSKVTCR L+
Sbjct: 294 FLLPHPGLKVATNPSFDGRLKDIDEDFKRELRNLVPLLLAPENLVEKEISGSKVTCRDLV 353
Query: 1229 EYFRHTLKSTR-ERSASPPVMLQATA 1303
EYF+ +K + E P MLQATA
Sbjct: 354 EYFKAYIKIYQGEELPHPKSMLQATA 379
>ref|NP_001129145.1| atlastin-2 isoform 2 [Homo sapiens].
Length = 583
Score = 484 bits (1246), Expect = e-137
Identities = 230/326 (70%), Positives = 280/326 (85%), Gaps = 1/326 (0%)
Frame = +2
Query: 329 KPGPVQVVMVQKDQHSFELEEKALASILLQDHIRDLDVVVVSVAGAFRKGKSFFLDFMLR 508
KP PVQ+V+ +D H+FEL+E+AL ILLQ+HIRDL++VVVSVAGAFRKGKSF LDFMLR
Sbjct: 57 KPCPVQIVLAHEDDHNFELDEEALEQILLQEHIRDLNIVVVSVAGAFRKGKSFLLDFMLR 116
Query: 509 YLYFQKEGGHSNWLGDPEEPLTGFSWRGGSDPETTGIQIWNEVFTVEKPGGKKVAVVLMD 688
Y+Y + +W+G EPLTGF+WRGG + ETTGIQ+WNEVF +++P G KVAV+LMD
Sbjct: 117 YMYNKDS---QSWIGGNNEPLTGFTWRGGCERETTGIQVWNEVFVIDRPNGTKVAVLLMD 173
Query: 689 TQGAFDSQSTVKDCATIFALSTMTSSVQIYNLSQNIQEDDLQQLQLFTEYGRLAMDEIFQ 868
TQGAFDSQST+KDCAT+FALSTMTSSVQ+YNLSQNIQEDDLQ LQLFTEYGRLAM+EI+Q
Sbjct: 174 TQGAFDSQSTIKDCATVFALSTMTSSVQVYNLSQNIQEDDLQHLQLFTEYGRLAMEEIYQ 233
Query: 869 KPFQTLMFLVRDWSFPYEYNYGLQGGMSFLEKRLQVKEHQHEEIQNVRNHIHSCFSSVTC 1048
KPFQTLMFL+RDWS+PYE++YGL+GG FLEKRLQVK++QHEE+QNVR HIH+CFS++ C
Sbjct: 234 KPFQTLMFLIRDWSYPYEHSYGLEGGKQFLEKRLQVKQNQHEELQNVRKHIHNCFSNLGC 293
Query: 1049 FLLPHPGLRVATSPDFDGKLKDIDSEFKEQLQILIPYVLNPANLMEKEINGSKVTCRGLL 1228
FLLPHPGL+VAT+P FDG+LKDID +FK +L+ L+P +L P NL+EKEI+GSKVTCR L+
Sbjct: 294 FLLPHPGLKVATNPSFDGRLKDIDEDFKRELRNLVPLLLAPENLVEKEISGSKVTCRDLV 353
Query: 1229 EYFRHTLKSTR-ERSASPPVMLQATA 1303
EYF+ +K + E P MLQATA
Sbjct: 354 EYFKAYIKIYQGEELPHPKSMLQATA 379
>ref|NP_001121185.1| atlastin-1 isoform b [Homo sapiens].
Length = 553
Score = 457 bits (1175), Expect = e-128
Identities = 223/326 (68%), Positives = 273/326 (83%), Gaps = 1/326 (0%)
Frame = +2
Query: 329 KPGPVQVVMVQKDQHSFELEEKALASILLQDHIRDLDVVVVSVAGAFRKGKSFFLDFMLR 508
K GPVQV++V KD HSFEL+E AL ILL + +RD +VV VSVAGAFRKGKSF +DFMLR
Sbjct: 31 KAGPVQVLIV-KDDHSFELDETALNRILLSEAVRDKEVVAVSVAGAFRKGKSFLMDFMLR 89
Query: 509 YLYFQKEGGHSNWLGDPEEPLTGFSWRGGSDPETTGIQIWNEVFTVEKPGGKKVAVVLMD 688
Y+Y Q+ +W+GD EPLTGFSWRGGS+ ETTGIQIW+E+F + KP GKKVAV+LMD
Sbjct: 90 YMYNQES---VDWVGDYNEPLTGFSWRGGSERETTGIQIWSEIFLINKPDGKKVAVLLMD 146
Query: 689 TQGAFDSQSTVKDCATIFALSTMTSSVQIYNLSQNIQEDDLQQLQLFTEYGRLAMDEIFQ 868
TQG FDSQST++D AT+FALSTM SS+Q+YNLSQN+QEDDLQ LQLFTEYGRLAM+E F
Sbjct: 147 TQGTFDSQSTLRDSATVFALSTMISSIQVYNLSQNVQEDDLQHLQLFTEYGRLAMEETFL 206
Query: 869 KPFQTLMFLVRDWSFPYEYNYGLQGGMSFLEKRLQVKEHQHEEIQNVRNHIHSCFSSVTC 1048
KPFQ+L+FLVRDWSFPYE++YG GG FLEKRL+V +QHEE+QNVR HIHSCF++++C
Sbjct: 207 KPFQSLIFLVRDWSFPYEFSYGADGGAKFLEKRLKVSGNQHEELQNVRKHIHSCFTNISC 266
Query: 1049 FLLPHPGLRVATSPDFDGKLKDIDSEFKEQLQILIPYVLNPANLMEKEINGSKVTCRGLL 1228
FLLPHPGL+VAT+P+FDGKLK+ID EF + L+ILIP++L+P +L KEING+K+TCRGL+
Sbjct: 267 FLLPHPGLKVATNPNFDGKLKEIDDEFIKNLKILIPWLLSPESLDIKEINGNKITCRGLV 326
Query: 1229 EYFRHTLKSTR-ERSASPPVMLQATA 1303
EYF+ +K + E P MLQATA
Sbjct: 327 EYFKAYIKIYQGEELPHPKSMLQATA 352
>ref|NP_853629.2| atlastin-1 isoform b [Homo sapiens].
Length = 553
Score = 457 bits (1175), Expect = e-128
Identities = 223/326 (68%), Positives = 273/326 (83%), Gaps = 1/326 (0%)
Frame = +2
Query: 329 KPGPVQVVMVQKDQHSFELEEKALASILLQDHIRDLDVVVVSVAGAFRKGKSFFLDFMLR 508
K GPVQV++V KD HSFEL+E AL ILL + +RD +VV VSVAGAFRKGKSF +DFMLR
Sbjct: 31 KAGPVQVLIV-KDDHSFELDETALNRILLSEAVRDKEVVAVSVAGAFRKGKSFLMDFMLR 89
Query: 509 YLYFQKEGGHSNWLGDPEEPLTGFSWRGGSDPETTGIQIWNEVFTVEKPGGKKVAVVLMD 688
Y+Y Q+ +W+GD EPLTGFSWRGGS+ ETTGIQIW+E+F + KP GKKVAV+LMD
Sbjct: 90 YMYNQES---VDWVGDYNEPLTGFSWRGGSERETTGIQIWSEIFLINKPDGKKVAVLLMD 146
Query: 689 TQGAFDSQSTVKDCATIFALSTMTSSVQIYNLSQNIQEDDLQQLQLFTEYGRLAMDEIFQ 868
TQG FDSQST++D AT+FALSTM SS+Q+YNLSQN+QEDDLQ LQLFTEYGRLAM+E F
Sbjct: 147 TQGTFDSQSTLRDSATVFALSTMISSIQVYNLSQNVQEDDLQHLQLFTEYGRLAMEETFL 206
Query: 869 KPFQTLMFLVRDWSFPYEYNYGLQGGMSFLEKRLQVKEHQHEEIQNVRNHIHSCFSSVTC 1048
KPFQ+L+FLVRDWSFPYE++YG GG FLEKRL+V +QHEE+QNVR HIHSCF++++C
Sbjct: 207 KPFQSLIFLVRDWSFPYEFSYGADGGAKFLEKRLKVSGNQHEELQNVRKHIHSCFTNISC 266
Query: 1049 FLLPHPGLRVATSPDFDGKLKDIDSEFKEQLQILIPYVLNPANLMEKEINGSKVTCRGLL 1228
FLLPHPGL+VAT+P+FDGKLK+ID EF + L+ILIP++L+P +L KEING+K+TCRGL+
Sbjct: 267 FLLPHPGLKVATNPNFDGKLKEIDDEFIKNLKILIPWLLSPESLDIKEINGNKITCRGLV 326
Query: 1229 EYFRHTLKSTR-ERSASPPVMLQATA 1303
EYF+ +K + E P MLQATA
Sbjct: 327 EYFKAYIKIYQGEELPHPKSMLQATA 352
>ref|NP_056999.2| atlastin-1 isoform a [Homo sapiens].
Length = 558
Score = 457 bits (1175), Expect = e-128
Identities = 223/326 (68%), Positives = 273/326 (83%), Gaps = 1/326 (0%)
Frame = +2
Query: 329 KPGPVQVVMVQKDQHSFELEEKALASILLQDHIRDLDVVVVSVAGAFRKGKSFFLDFMLR 508
K GPVQV++V KD HSFEL+E AL ILL + +RD +VV VSVAGAFRKGKSF +DFMLR
Sbjct: 31 KAGPVQVLIV-KDDHSFELDETALNRILLSEAVRDKEVVAVSVAGAFRKGKSFLMDFMLR 89
Query: 509 YLYFQKEGGHSNWLGDPEEPLTGFSWRGGSDPETTGIQIWNEVFTVEKPGGKKVAVVLMD 688
Y+Y Q+ +W+GD EPLTGFSWRGGS+ ETTGIQIW+E+F + KP GKKVAV+LMD
Sbjct: 90 YMYNQES---VDWVGDYNEPLTGFSWRGGSERETTGIQIWSEIFLINKPDGKKVAVLLMD 146
Query: 689 TQGAFDSQSTVKDCATIFALSTMTSSVQIYNLSQNIQEDDLQQLQLFTEYGRLAMDEIFQ 868
TQG FDSQST++D AT+FALSTM SS+Q+YNLSQN+QEDDLQ LQLFTEYGRLAM+E F
Sbjct: 147 TQGTFDSQSTLRDSATVFALSTMISSIQVYNLSQNVQEDDLQHLQLFTEYGRLAMEETFL 206
Query: 869 KPFQTLMFLVRDWSFPYEYNYGLQGGMSFLEKRLQVKEHQHEEIQNVRNHIHSCFSSVTC 1048
KPFQ+L+FLVRDWSFPYE++YG GG FLEKRL+V +QHEE+QNVR HIHSCF++++C
Sbjct: 207 KPFQSLIFLVRDWSFPYEFSYGADGGAKFLEKRLKVSGNQHEELQNVRKHIHSCFTNISC 266
Query: 1049 FLLPHPGLRVATSPDFDGKLKDIDSEFKEQLQILIPYVLNPANLMEKEINGSKVTCRGLL 1228
FLLPHPGL+VAT+P+FDGKLK+ID EF + L+ILIP++L+P +L KEING+K+TCRGL+
Sbjct: 267 FLLPHPGLKVATNPNFDGKLKEIDDEFIKNLKILIPWLLSPESLDIKEINGNKITCRGLV 326
Query: 1229 EYFRHTLKSTR-ERSASPPVMLQATA 1303
EYF+ +K + E P MLQATA
Sbjct: 327 EYFKAYIKIYQGEELPHPKSMLQATA 352
>ref|NP_009079.2| RING finger protein 112 [Homo sapiens].
Length = 631
Score = 86.3 bits (212), Expect = 6e-17
Identities = 77/249 (30%), Positives = 114/249 (45%)
Frame = +2
Query: 428 RDLDVVVVSVAGAFRKGKSFFLDFMLRYLYFQKEGGHSNWLGDPEEPLTGFSWRGGSDPE 607
RD V +++V G GKSF L+ +L+ L + G G E L G W G++
Sbjct: 165 RDTPVCLLAVLGEQHSGKSFLLNHLLQGLPGLESGEGGRPRGG-EASLQGCRW--GANGL 221
Query: 608 TTGIQIWNEVFTVEKPGGKKVAVVLMDTQGAFDSQSTVKDCATIFALSTMTSSVQIYNLS 787
GI +W+ F + K G KKVAV L+DT A + + + + AL+TM SS QI + S
Sbjct: 222 ARGIWMWSHPFLLGKEG-KKVAVFLVDTGDAMSPELSRETRIKLCALTTMLSSYQILSTS 280
Query: 788 QNIQEDDLQQLQLFTEYGRLAMDEIFQKPFQTLMFLVRDWSFPYEYNYGLQGGMSFLEKR 967
Q +++ DL L++F + P Q L LVRD S P N QG + + +R
Sbjct: 281 QELKDTDLDYLEMFVHVAEVMGKHYGMVPIQHLDLLVRDSSHP---NKAGQGHVGNIFQR 337
Query: 968 LQVKEHQHEEIQNVRNHIHSCFSSVTCFLLPHPGLRVATSPDFDGKLKDIDSEFKEQLQI 1147
L + + +E+ + C LLP PG R D D +F+ L
Sbjct: 338 LSGRYPKVQELLQGKR--------ARCCLLPAPGRRRMNQG--HASPGDTDDDFRHLLGA 387
Query: 1148 LIPYVLNPA 1174
+ VL+ A
Sbjct: 388 YVSDVLSAA 396
>ref|NP_940862.2| guanylate-binding protein 6 [Homo sapiens].
Length = 633
Score = 64.3 bits (155), Expect = 2e-10
Identities = 73/307 (23%), Positives = 120/307 (39%), Gaps = 21/307 (6%)
Frame = +2
Query: 317 MEGGKPGPVQVVMVQKDQHSFELEEKALASILLQDHIRDLDVVVVSVAGAFRKGKSFFLD 496
ME G V +V+ + + ++A I + + I VVVV++ G +R GKS+ ++
Sbjct: 1 MESGPKMLAPVCLVENNNEQLLVNQQA---IQILEKISQ-PVVVVAIVGLYRTGKSYLMN 56
Query: 497 FMLRYLYFQKEGGHSNWLGDPEEPLTGFSWRGGSDPETTGIQIWNEVFTVEKPGGKKVAV 676
+ G ++ GF ET GI +W V P +
Sbjct: 57 HL---------AGQNH----------GFPLGSTVQSETKGIWMW----CVPHPSKPNHTL 93
Query: 677 VLMDTQGAFD-SQSTVKDCATIFALSTMTSSVQIYNLSQNIQEDDLQQLQLFTEYGRLAM 853
VL+DT+G D + K+ + IFAL+ + S +YN I L+QL TE L
Sbjct: 94 VLLDTEGLGDVEKGDPKNDSWIFALAVLLCSTFVYNSMSTINHQALEQLHYVTELTELIK 153
Query: 854 DEIFQKP------------FQTLMFLVRDWSFPYEYNYGLQGGMSFLEKRLQVKEHQHEE 997
+ +P F ++ VRD++ + N +LE L++ + +
Sbjct: 154 AKSSPRPDGVEDSTEFVSFFPDFLWTVRDFTLELKLNGHPITEDEYLENALKLIQGNNPR 213
Query: 998 IQN---VRNHIHSCFSSVTCFLLPHPGLRVATSPDFDGKL-----KDIDSEFKEQLQILI 1153
+Q R I F CF+ P D + K +D +F+EQ I
Sbjct: 214 VQTSNFPRECIRRFFPKRKCFVFDRP----TNDKDLLANIEKVSEKQLDPKFQEQTNIFC 269
Query: 1154 PYVLNPA 1174
Y+ A
Sbjct: 270 SYIFTHA 276
>ref|NP_004111.2| interferon-induced guanylate-binding protein 2 [Homo sapiens].
Length = 591
Score = 63.9 bits (154), Expect = 3e-10
Identities = 71/299 (23%), Positives = 126/299 (42%), Gaps = 16/299 (5%)
Frame = +2
Query: 332 PGPVQVVMVQKDQHSFELEEKALASILLQDHIRDLDVVVVSVAGAFRKGKSFFLDFMLRY 511
PGP+ ++ K Q E + S + Q VVVV++ G +R GKS+ ++
Sbjct: 8 PGPMSLIDNTKGQLVVNPEALKILSAITQP------VVVVAIVGLYRTGKSYLMN----- 56
Query: 512 LYFQKEGGHSNWLGDPEEPLTGFSWRGGSDPETTGIQIWNEVFTVEKPGGKKVAVVLMDT 691
K G N GFS T GI +W V P + +VL+DT
Sbjct: 57 ----KLAGKKN----------GFSLGSTVKSHTKGIWMW----CVPHPKKPEHTLVLLDT 98
Query: 692 QGAFD-SQSTVKDCATIFALSTMTSSVQIYNLSQNIQEDDLQQLQLFTEY---------- 838
+G D + ++ + IFAL+ + SS +YN I + + QL TE
Sbjct: 99 EGLGDIEKGDNENDSWIFALAILLSSTFVYNSMGTINQQAMDQLHYVTELTDRIKANSSP 158
Query: 839 GRLAMDEI--FQKPFQTLMFLVRDWSFPYEYNYGLQGGMSFLEKRLQVK---EHQHEEIQ 1003
G ++D+ F F ++ +RD++ E + +LE L+++ + + +
Sbjct: 159 GNNSVDDSADFVSFFPAFVWTLRDFTLELEVDGEPITADDYLELSLKLRKGTDKKSKSFN 218
Query: 1004 NVRNHIHSCFSSVTCFLLPHPGLRVATSPDFDGKLKDIDSEFKEQLQILIPYVLNPANL 1180
+ R I F CF+ P + + K ++++ +F EQ+ Y+L+ +N+
Sbjct: 219 DPRLCIRKFFPKRKCFVFDWPAPKKYLAHLEQLKEEELNPDFIEQVAEFCSYILSHSNV 277
>ref|NP_001127958.1| guanylate-binding protein 5 [Homo sapiens].
Length = 586
Score = 62.0 bits (149), Expect = 1e-09
Identities = 73/286 (25%), Positives = 118/286 (41%), Gaps = 29/286 (10%)
Frame = +2
Query: 440 VVVVSVAGAFRKGKSFFLDFMLRYLYFQKEGGHSNWLGDPEEPLTGFSWRGGSDPETTGI 619
VVVV++ G +R GKS+ ++ K G + GFS T GI
Sbjct: 38 VVVVAIVGLYRTGKSYLMN---------KLAGKNK----------GFSVASTVQSHTKGI 78
Query: 620 QIWNEVFTVEKPGGKKVAVVLMDTQGAFD-SQSTVKDCATIFALSTMTSSVQIYNLSQNI 796
IW V P +VL+DT+G D ++ K+ IFAL+ + SS +YN I
Sbjct: 79 WIW----CVPHPNWPNHTLVLLDTEGLGDVEKADNKNDIQIFALALLLSSTFVYNTVNKI 134
Query: 797 QEDDLQQLQLFTEYGRLA-------MDEIFQKP------FQTLMFLVRDWSFPYEYNYGL 937
+ + L TE L +D + + P F L++ +RD+ E + L
Sbjct: 135 DQGAIDLLHNVTELTDLLKARNSPDLDRV-EDPADSASFFPDLVWTLRDFCLGLEIDGQL 193
Query: 938 QGGMSFLEKRLQVKEHQHEEIQNV---RNHIHSCFSSVTCFLLPHPG-----LRVATSPD 1093
+LE L+ K+ + +QN R I F CF+ P ++ T PD
Sbjct: 194 VTPDEYLENSLRPKQGSDQRVQNFNLPRLCIQKFFPKKKCFIFDLPAHQKKLAQLETLPD 253
Query: 1094 FDGKLKDIDSEFKEQLQILIPYVLN-------PANLMEKEINGSKV 1210
+++ EF +Q+ Y+ + P +M +NGS++
Sbjct: 254 -----DELEPEFVQQVTEFCSYIFSHSMTKTLPGGIM---VNGSRL 291
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 53,450,271
Number of extensions: 1568670
Number of successful extensions: 8174
Number of sequences better than 1.0e-05: 15
Number of HSP's gapped: 7934
Number of HSP's successfully gapped: 15
Length of query: 435
Length of database: 18,297,164
Length adjustment: 106
Effective length of query: 329
Effective length of database: 14,802,980
Effective search space: 4870180420
Effective search space used: 4870180420
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003950
(1305 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_666203.3| atlastin-3 isoform 2 [Mus musculus]. 597 e-171
Alignment gi|NP_001156977.1| atlastin-3 isoform 1 [Mus musculus]. 593 e-169
Alignment gi|NP_062691.3| atlastin-2 isoform 1 [Mus musculus]. 484 e-137
Alignment gi|NP_848743.1| atlastin-1 [Mus musculus]. 453 e-127
Alignment gi|NP_835151.2| atlastin-2 isoform 2 [Mus musculus]. 325 6e-89
Alignment gi|NP_033574.2| RING finger protein 112 [Mus musculus]. 82 1e-15
Alignment gi|NP_001034736.2| guanylate binding protein 11 [Mus musculus]. 69 8e-12
Alignment gi|NP_034390.1| interferon-induced guanylate-binding protein 2 ... 65 9e-11
Alignment gi|NP_766365.1| guanylate binding protein family, member 9 [Mus... 63 6e-10
Alignment gi|NP_919317.2| guanylate binding protein 6 [Mus musculus]. 60 5e-09
>ref|NP_666203.3| atlastin-3 isoform 2 [Mus musculus].
Length = 541
Score = 597 bits (1540), Expect = e-171
Identities = 298/348 (85%), Positives = 314/348 (90%), Gaps = 1/348 (0%)
Frame = +2
Query: 263 MLSPQXXXXXXXXXXXXXMEGGKPGPVQVVMVQKDQHSFELEEKALASILLQDHIRDLDV 442
MLSPQ ME GKPGPVQVV+V K+QHSFELEE+ALAS+LLQDHIRDLDV
Sbjct: 1 MLSPQRTAAVASRGAGDAMENGKPGPVQVVLVHKEQHSFELEERALASVLLQDHIRDLDV 60
Query: 443 VVVSVAGAFRKGKSFFLDFMLRYLYFQKEGGHSNWLGDPEEPLTGFSWRGGSDPETTGIQ 622
VVVSVAGAFRKGKSF LDFMLRYLY QKEGGHS+WLGDPEEPLTGFSWRGGSDPETTGIQ
Sbjct: 61 VVVSVAGAFRKGKSFILDFMLRYLYSQKEGGHSDWLGDPEEPLTGFSWRGGSDPETTGIQ 120
Query: 623 IWNEVFTVEKPGGKKVAVVLMDTQGAFDSQSTVKDCATIFALSTMTSSVQIYNLSQNIQE 802
IW+EVFTV+KP GKKVAVVLMDTQGAFDSQSTVKDCATIFALSTMTSSVQIYNLSQNIQE
Sbjct: 121 IWSEVFTVKKPCGKKVAVVLMDTQGAFDSQSTVKDCATIFALSTMTSSVQIYNLSQNIQE 180
Query: 803 DDLQQLQLFTEYGRLAMDEIFQKPFQTLMFLVRDWSFPYEYNYGLQGGMSFLEKRLQVKE 982
DDLQQLQLFTEYGRLAMDEIFQKPFQTLMFL+RDWSFPYEYNYGLQGGM+FL+KRL VKE
Sbjct: 181 DDLQQLQLFTEYGRLAMDEIFQKPFQTLMFLIRDWSFPYEYNYGLQGGMAFLDKRLHVKE 240
Query: 983 HQHEEIQNVRNHIHSCFSSVTCFLLPHPGLRVATSPDFDGKLKDIDSEFKEQLQILIPYV 1162
HQHEEIQNVRNHIHSCFS VTCFLLPHPGL+VATSP+FDGKLKDI SEFKEQLQ LIPYV
Sbjct: 241 HQHEEIQNVRNHIHSCFSDVTCFLLPHPGLQVATSPNFDGKLKDIASEFKEQLQALIPYV 300
Query: 1163 LNPANLMEKEINGSKVTCRGLLEYFRHTLKSTR-ERSASPPVMLQATA 1303
LNP+ LMEKEINGSKVTCRGLLEYF+ +K + E P MLQATA
Sbjct: 301 LNPSKLMEKEINGSKVTCRGLLEYFKAYIKIYQGEDLPHPKSMLQATA 348
>ref|NP_001156977.1| atlastin-3 isoform 1 [Mus musculus].
Length = 536
Score = 593 bits (1528), Expect = e-169
Identities = 293/330 (88%), Positives = 309/330 (93%), Gaps = 1/330 (0%)
Frame = +2
Query: 317 MEGGKPGPVQVVMVQKDQHSFELEEKALASILLQDHIRDLDVVVVSVAGAFRKGKSFFLD 496
ME GKPGPVQVV+V K+QHSFELEE+ALAS+LLQDHIRDLDVVVVSVAGAFRKGKSF LD
Sbjct: 14 MENGKPGPVQVVLVHKEQHSFELEERALASVLLQDHIRDLDVVVVSVAGAFRKGKSFILD 73
Query: 497 FMLRYLYFQKEGGHSNWLGDPEEPLTGFSWRGGSDPETTGIQIWNEVFTVEKPGGKKVAV 676
FMLRYLY QKEGGHS+WLGDPEEPLTGFSWRGGSDPETTGIQIW+EVFTV+KP GKKVAV
Sbjct: 74 FMLRYLYSQKEGGHSDWLGDPEEPLTGFSWRGGSDPETTGIQIWSEVFTVKKPCGKKVAV 133
Query: 677 VLMDTQGAFDSQSTVKDCATIFALSTMTSSVQIYNLSQNIQEDDLQQLQLFTEYGRLAMD 856
VLMDTQGAFDSQSTVKDCATIFALSTMTSSVQIYNLSQNIQEDDLQQLQLFTEYGRLAMD
Sbjct: 134 VLMDTQGAFDSQSTVKDCATIFALSTMTSSVQIYNLSQNIQEDDLQQLQLFTEYGRLAMD 193
Query: 857 EIFQKPFQTLMFLVRDWSFPYEYNYGLQGGMSFLEKRLQVKEHQHEEIQNVRNHIHSCFS 1036
EIFQKPFQTLMFL+RDWSFPYEYNYGLQGGM+FL+KRL VKEHQHEEIQNVRNHIHSCFS
Sbjct: 194 EIFQKPFQTLMFLIRDWSFPYEYNYGLQGGMAFLDKRLHVKEHQHEEIQNVRNHIHSCFS 253
Query: 1037 SVTCFLLPHPGLRVATSPDFDGKLKDIDSEFKEQLQILIPYVLNPANLMEKEINGSKVTC 1216
VTCFLLPHPGL+VATSP+FDGKLKDI SEFKEQLQ LIPYVLNP+ LMEKEINGSKVTC
Sbjct: 254 DVTCFLLPHPGLQVATSPNFDGKLKDIASEFKEQLQALIPYVLNPSKLMEKEINGSKVTC 313
Query: 1217 RGLLEYFRHTLKSTR-ERSASPPVMLQATA 1303
RGLLEYF+ +K + E P MLQATA
Sbjct: 314 RGLLEYFKAYIKIYQGEDLPHPKSMLQATA 343
>ref|NP_062691.3| atlastin-2 isoform 1 [Mus musculus].
Length = 583
Score = 484 bits (1246), Expect = e-137
Identities = 230/326 (70%), Positives = 280/326 (85%), Gaps = 1/326 (0%)
Frame = +2
Query: 329 KPGPVQVVMVQKDQHSFELEEKALASILLQDHIRDLDVVVVSVAGAFRKGKSFFLDFMLR 508
KP PVQ+V+ +D H+FEL+E+AL ILLQ+HIRDL++VVVSVAGAFRKGKSF LDFMLR
Sbjct: 57 KPCPVQIVLAHEDDHNFELDEEALEQILLQEHIRDLNIVVVSVAGAFRKGKSFLLDFMLR 116
Query: 509 YLYFQKEGGHSNWLGDPEEPLTGFSWRGGSDPETTGIQIWNEVFTVEKPGGKKVAVVLMD 688
Y+Y + +W+G EPLTGF+WRGG + ETTGIQ+WNEVF +++P G KVAV+LMD
Sbjct: 117 YMYNKDS---QSWIGGNNEPLTGFTWRGGCERETTGIQVWNEVFVIDRPNGTKVAVLLMD 173
Query: 689 TQGAFDSQSTVKDCATIFALSTMTSSVQIYNLSQNIQEDDLQQLQLFTEYGRLAMDEIFQ 868
TQGAFDSQST+KDCAT+FALSTMTSSVQ+YNLSQNIQEDDLQ LQLFTEYGRLAM+EI+Q
Sbjct: 174 TQGAFDSQSTIKDCATVFALSTMTSSVQVYNLSQNIQEDDLQHLQLFTEYGRLAMEEIYQ 233
Query: 869 KPFQTLMFLVRDWSFPYEYNYGLQGGMSFLEKRLQVKEHQHEEIQNVRNHIHSCFSSVTC 1048
KPFQTLMFL+RDWS+PYE++YGL+GG FLEKRLQVK++QHEE+QNVR HIH+CFS++ C
Sbjct: 234 KPFQTLMFLIRDWSYPYEHSYGLEGGKQFLEKRLQVKQNQHEELQNVRKHIHNCFSNLGC 293
Query: 1049 FLLPHPGLRVATSPDFDGKLKDIDSEFKEQLQILIPYVLNPANLMEKEINGSKVTCRGLL 1228
FLLPHPGL+VAT+P FDG+LKDID +FK +L+ L+P +L P NL+EKEI+GSKVTCR L+
Sbjct: 294 FLLPHPGLKVATNPSFDGRLKDIDEDFKRELRNLVPLLLAPENLVEKEISGSKVTCRDLV 353
Query: 1229 EYFRHTLKSTR-ERSASPPVMLQATA 1303
EYF+ +K + E P MLQATA
Sbjct: 354 EYFKAYIKIYQGEELPHPKSMLQATA 379
>ref|NP_848743.1| atlastin-1 [Mus musculus].
Length = 558
Score = 453 bits (1166), Expect = e-127
Identities = 224/326 (68%), Positives = 270/326 (82%), Gaps = 1/326 (0%)
Frame = +2
Query: 329 KPGPVQVVMVQKDQHSFELEEKALASILLQDHIRDLDVVVVSVAGAFRKGKSFFLDFMLR 508
K GPVQV++V KD HSFEL+E AL ILL +RD +VV VSVAGAFRKGKSF +DFMLR
Sbjct: 31 KAGPVQVLIV-KDDHSFELDEAALNRILLSQAVRDKEVVAVSVAGAFRKGKSFLMDFMLR 89
Query: 509 YLYFQKEGGHSNWLGDPEEPLTGFSWRGGSDPETTGIQIWNEVFTVEKPGGKKVAVVLMD 688
Y+Y Q+ +W+GD EPLTGFSWRGGS+ ETTGIQIW+EVF + K GKKVAV+LMD
Sbjct: 90 YMYNQES---VDWVGDYNEPLTGFSWRGGSERETTGIQIWSEVFLINKLDGKKVAVLLMD 146
Query: 689 TQGAFDSQSTVKDCATIFALSTMTSSVQIYNLSQNIQEDDLQQLQLFTEYGRLAMDEIFQ 868
TQG FDSQST++D AT+FALSTM SS+Q+YNLSQN+QEDDLQ LQLFTEYGRLAM+E F
Sbjct: 147 TQGTFDSQSTLRDSATVFALSTMISSIQVYNLSQNVQEDDLQHLQLFTEYGRLAMEETFL 206
Query: 869 KPFQTLMFLVRDWSFPYEYNYGLQGGMSFLEKRLQVKEHQHEEIQNVRNHIHSCFSSVTC 1048
KPFQ+L+FLVRDWSFPYE++YG GG FLEKRL+V +QHEE+QNVR HIHSCF++++C
Sbjct: 207 KPFQSLIFLVRDWSFPYEFSYGADGGAKFLEKRLKVSGNQHEELQNVRKHIHSCFTNISC 266
Query: 1049 FLLPHPGLRVATSPDFDGKLKDIDSEFKEQLQILIPYVLNPANLMEKEINGSKVTCRGLL 1228
FLLPHPGL+VAT+P+FDGKLK+ID EF + L+ILIP++L+P L KEING+K+TCRGLL
Sbjct: 267 FLLPHPGLKVATNPNFDGKLKEIDDEFIKNLKILIPWLLSPERLDIKEINGNKITCRGLL 326
Query: 1229 EYFRHTLKSTR-ERSASPPVMLQATA 1303
EYF+ +K + E P MLQATA
Sbjct: 327 EYFKAYIKIYQGEELPHPKSMLQATA 352
>ref|NP_835151.2| atlastin-2 isoform 2 [Mus musculus].
Length = 412
Score = 325 bits (832), Expect = 6e-89
Identities = 154/208 (74%), Positives = 184/208 (88%), Gaps = 1/208 (0%)
Frame = +2
Query: 683 MDTQGAFDSQSTVKDCATIFALSTMTSSVQIYNLSQNIQEDDLQQLQLFTEYGRLAMDEI 862
MDTQGAFDSQST+KDCAT+FALSTMTSSVQ+YNLSQNIQEDDLQ LQLFTEYGRLAM+EI
Sbjct: 1 MDTQGAFDSQSTIKDCATVFALSTMTSSVQVYNLSQNIQEDDLQHLQLFTEYGRLAMEEI 60
Query: 863 FQKPFQTLMFLVRDWSFPYEYNYGLQGGMSFLEKRLQVKEHQHEEIQNVRNHIHSCFSSV 1042
+QKPFQTLMFL+RDWS+PYE++YGL+GG FLEKRLQVK++QHEE+QNVR HIH+CFS++
Sbjct: 61 YQKPFQTLMFLIRDWSYPYEHSYGLEGGKQFLEKRLQVKQNQHEELQNVRKHIHNCFSNL 120
Query: 1043 TCFLLPHPGLRVATSPDFDGKLKDIDSEFKEQLQILIPYVLNPANLMEKEINGSKVTCRG 1222
CFLLPHPGL+VAT+P FDG+LKDID +FK +L+ L+P +L P NL+EKEI+GSKVTCR
Sbjct: 121 GCFLLPHPGLKVATNPSFDGRLKDIDEDFKRELRNLVPLLLAPENLVEKEISGSKVTCRD 180
Query: 1223 LLEYFRHTLKSTR-ERSASPPVMLQATA 1303
L+EYF+ +K + E P MLQATA
Sbjct: 181 LVEYFKAYIKIYQGEELPHPKSMLQATA 208
>ref|NP_033574.2| RING finger protein 112 [Mus musculus].
Length = 654
Score = 81.6 bits (200), Expect = 1e-15
Identities = 76/251 (30%), Positives = 114/251 (45%), Gaps = 2/251 (0%)
Frame = +2
Query: 428 RDLDVVVVSVAGAFRKGKSFFLDFMLRYLYFQKEGGHSNWLGDP--EEPLTGFSWRGGSD 601
RD V +++V G GKSF LD +L L + G G P E L G W G++
Sbjct: 188 RDTPVCLLAVLGEQHSGKSFLLDHLLSGLPSLESGDS----GRPRAEGSLPGIRW--GAN 241
Query: 602 PETTGIQIWNEVFTVEKPGGKKVAVVLMDTQGAFDSQSTVKDCATIFALSTMTSSVQIYN 781
T GI +W+ F + K G KKVAV L+DT + + + + AL+ M SS QI N
Sbjct: 242 GLTRGIWMWSHPFLLGKEG-KKVAVFLVDTGDVMSPELSKETRVKLCALTMMLSSYQILN 300
Query: 782 LSQNIQEDDLQQLQLFTEYGRLAMDEIFQKPFQTLMFLVRDWSFPYEYNYGLQGGMSFLE 961
SQ +++ DL L++F + P Q L LVRD S +N QG + +
Sbjct: 301 TSQELKDTDLGYLEMFVHVAEVMGKHYGMVPIQHLDLLVRDSS---HHNKSGQGHVGDIL 357
Query: 962 KRLQVKEHQHEEIQNVRNHIHSCFSSVTCFLLPHPGLRVATSPDFDGKLKDIDSEFKEQL 1141
++L K + +E+ + C+LLP P R + D + + +F
Sbjct: 358 QKLSGKYPKVQELLLGKR--------ARCYLLPAPE-RQWVNKDQASPRGNTEDDFSHHF 408
Query: 1142 QILIPYVLNPA 1174
+ I VL+ A
Sbjct: 409 RAYILDVLSTA 419
>ref|NP_001034736.2| guanylate binding protein 11 [Mus musculus].
Length = 619
Score = 68.9 bits (167), Expect = 8e-12
Identities = 71/279 (25%), Positives = 115/279 (41%), Gaps = 17/279 (6%)
Frame = +2
Query: 440 VVVVSVAGAFRKGKSFFLDFMLRYLYFQKEGGHSNWLGDPEEPLTGFSWRGGSDPETTGI 619
VVVV++ G +R GKS+ ++ + G ++ GF +T GI
Sbjct: 36 VVVVAIVGLYRTGKSYLMNRL---------AGQNH----------GFPLGSTVQSQTKGI 76
Query: 620 QIWNEVFTVEKPGGKKVAVVLMDTQGAFD-SQSTVKDCATIFALSTMTSSVQIYNLSQNI 796
+W V P + +VL+DT+G D + K+ IFALS + SS IYN I
Sbjct: 77 WMW----CVPHPTKPEHTLVLLDTEGLGDVEKGDPKNDLWIFALSVLLSSTFIYNSMNTI 132
Query: 797 QEDDLQQLQLFTEYGRLAMDEIFQKP------------FQTLMFLVRDWSFPYEYNYGLQ 940
D L++L TE L + P F ++ VRD++ + N
Sbjct: 133 SHDSLEKLHYVTELTELIRAKSSPNPHGIKNSTEFVSFFPDFVWTVRDFTLKLKLNGEDI 192
Query: 941 GGMSFLEKRLQVKEHQHEEIQN---VRNHIHSCFSSVTCFLLPHPGLRVATSPDFDGKLK 1111
+LE L++ + +Q R I F + CF+ P + + +
Sbjct: 193 TSDGYLENALKLIPDNNPRMQASNLARECIRRFFPNRKCFVFDRPTYDIELLQKLETISE 252
Query: 1112 D-IDSEFKEQLQILIPYVLNPANLMEKEINGSKVTCRGL 1225
D +D F+E+ + + Y+ N A + + G KVT GL
Sbjct: 253 DQLDPMFQERTKAFVSYIFNYAKIKTLK-EGIKVTGNGL 290
>ref|NP_034390.1| interferon-induced guanylate-binding protein 2 [Mus musculus].
Length = 589
Score = 65.5 bits (158), Expect = 9e-11
Identities = 73/280 (26%), Positives = 111/280 (39%), Gaps = 17/280 (6%)
Frame = +2
Query: 440 VVVVSVAGAFRKGKSFFLDFMLRYLYFQKEGGHSNWLGDPEEPLTGFSWRGGSDPETTGI 619
VVVV++ G +R GKS+ ++ K G TGFS T GI
Sbjct: 38 VVVVAIVGLYRTGKSYLMN---------KLAGKR----------TGFSLGSTVQSHTKGI 78
Query: 620 QIWNEVFTVEKPGGKKVAVVLMDTQGAFDSQS--TVKDCATIFALSTMTSSVQIYNLSQN 793
+W V P +VL+DT+G D + DC IFAL+ + SS IYN
Sbjct: 79 WMW----CVPHPKKAGQTLVLLDTEGLEDVEKGDNQNDC-WIFALAVLLSSTFIYNSIGT 133
Query: 794 IQEDDLQQLQLFTEYGRLAMDEI------------FQKPFQTLMFLVRDWSFPYEYNYGL 937
I + + QL TE L + F F T ++ +RD+S E N
Sbjct: 134 INQQAMDQLHYVTELTDLIKSKSSPDQSGVDDSANFVGFFPTFVWTLRDFSLELEVNGKP 193
Query: 938 QGGMSFLEKRLQVK---EHQHEEIQNVRNHIHSCFSSVTCFLLPHPGLRVATSPDFDGKL 1108
+LE L +K + + + R I F CF+ P R S +
Sbjct: 194 VTSDEYLEHSLTLKKGADKKTKSFNEPRLCIRKFFPKRKCFIFDRPAQRKQLSKLETLRE 253
Query: 1109 KDIDSEFKEQLQILIPYVLNPANLMEKEINGSKVTCRGLL 1228
+++ EF EQ+ Y+L+ +++ K C G++
Sbjct: 254 EELCGEFVEQVAEFTSYILSYSSV--------KTLCGGII 285
>ref|NP_766365.1| guanylate binding protein family, member 9 [Mus musculus].
Length = 619
Score = 62.8 bits (151), Expect = 6e-10
Identities = 68/275 (24%), Positives = 112/275 (40%), Gaps = 17/275 (6%)
Frame = +2
Query: 440 VVVVSVAGAFRKGKSFFLDFMLRYLYFQKEGGHSNWLGDPEEPLTGFSWRGGSDPETTGI 619
VVVV++ G +R GKS+ ++ + G ++ GF +T GI
Sbjct: 36 VVVVAIVGLYRTGKSYLMNCL---------AGQNH----------GFPLGSTVQSQTKGI 76
Query: 620 QIWNEVFTVEKPGGKKVAVVLMDTQGAFD-SQSTVKDCATIFALSTMTSSVQIYNLSQNI 796
+W + P + +VL+DT+G D +S K+ + IFALS + SS +YN I
Sbjct: 77 WMW----CMPHPTKPEHTLVLLDTEGLGDVEKSNPKNDSWIFALSVLLSSTFVYNSMSTI 132
Query: 797 QEDDLQQLQLFTEYGRLAMDEIFQKP------------FQTLMFLVRDWSFPYEYNYGLQ 940
L+QL TE L + + P F ++ VRD+ + N
Sbjct: 133 NHQALEQLHYVTELTELIRSKSSRNPHGIKNSTEFVSFFPDFVWTVRDFMLELKLNGEDI 192
Query: 941 GGMSFLEKRLQVKEHQHEEIQ---NVRNHIHSCFSSVTCFLLPHPGLRVATSPDFDGKLK 1111
+LE L++ + +Q + R I F + CF+ P + +
Sbjct: 193 TSDEYLENALKLIPGYNPRVQASNSARECIRCFFPNRKCFVFDRPTHDRELLQKLETISE 252
Query: 1112 D-IDSEFKEQLQILIPYVLNPANLMEKEINGSKVT 1213
D +D +F+E + + YV A + G KVT
Sbjct: 253 DQLDLKFREGTKAFVSYVFTYAKIKTLR-EGIKVT 286
>ref|NP_919317.2| guanylate binding protein 6 [Mus musculus].
Length = 611
Score = 59.7 bits (143), Expect = 5e-09
Identities = 73/312 (23%), Positives = 123/312 (39%), Gaps = 17/312 (5%)
Frame = +2
Query: 329 KPGPVQVVMVQKDQHSFELEEKALASILLQDHIRDLDVVVVSVAGAFRKGKSFFLDFMLR 508
+P + +V+ + ++A+ + D I VVVV++ G +R GKS+ ++ +
Sbjct: 3 QPQMAPICLVENHNEQLSVNQEAIEIL---DKISQ-PVVVVAIVGLYRTGKSYLMNCL-- 56
Query: 509 YLYFQKEGGHSNWLGDPEEPLTGFSWRGGSDPETTGIQIWNEVFTVEKPGGKKVAVVLMD 688
G ++ GF +T GI +W + P + +VL+D
Sbjct: 57 -------AGQNH----------GFPLGSTVQSQTKGIWMW----CMPHPTKPEHTLVLLD 95
Query: 689 TQGAFD-SQSTVKDCATIFALSTMTSSVQIYNLSQNIQEDDLQQLQLFTEYGRLAMDEIF 865
T+G D + K+ IFALS + SS IYN I L+QL TE L +
Sbjct: 96 TEGLGDVEKGDPKNDLWIFALSVLLSSTFIYNSMITINHQALEQLHYVTELTELIRAKSS 155
Query: 866 QKP------------FQTLMFLVRDWSFPYEYNYGLQGGMSFLEKRLQVKEHQHEEIQ-- 1003
P F ++ VRD+ + N +LE L++ +Q
Sbjct: 156 PNPAGIKNSTEFVSFFPDFVWTVRDFMLELKLNGEDITSDDYLENALKLIPGDKPRMQAS 215
Query: 1004 -NVRNHIHSCFSSVTCFLLPHPGLRVATSPDFDGKLKD-IDSEFKEQLQILIPYVLNPAN 1177
+ R I F + CF+ P D +D +D +F+E + + Y+ A
Sbjct: 216 NSCRECIRLFFPNRKCFVFDRPTHDKELLQKLDSITEDQLDPKFQEVTKAFVSYIFTYAK 275
Query: 1178 LMEKEINGSKVT 1213
+ + G KVT
Sbjct: 276 IKTLK-EGIKVT 286
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 45,102,826
Number of extensions: 1304758
Number of successful extensions: 6601
Number of sequences better than 1.0e-05: 17
Number of HSP's gapped: 6330
Number of HSP's successfully gapped: 17
Length of query: 435
Length of database: 15,617,559
Length adjustment: 104
Effective length of query: 331
Effective length of database: 12,493,815
Effective search space: 4135452765
Effective search space used: 4135452765
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003950
(1305 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_003122651.2| PREDICTED: atlastin-3 [Sus scrofa]. 634 0.0
Alignment gi|XP_003125271.1| PREDICTED: atlastin-2-like, partial [Sus scr... 484 e-137
Alignment gi|XP_001925533.3| PREDICTED: atlastin-1, partial [Sus scrofa]. 379 e-105
Alignment gi|XP_003353530.1| PREDICTED: atlastin-1-like [Sus scrofa]. 212 4e-55
Alignment gi|XP_003125970.2| PREDICTED: interferon-induced guanylate-bind... 65 1e-10
Alignment gi|NP_001121946.1| interferon-induced guanylate-binding protein... 64 1e-10
Alignment gi|NP_001121945.1| interferon-induced guanylate-binding protein... 60 3e-09
Alignment gi|XP_003355347.1| PREDICTED: guanylate-binding protein 6 [Sus ... 57 2e-08
Alignment gi|XP_003125968.2| PREDICTED: guanylate-binding protein 5-like ... 49 6e-06
>ref|XP_003122651.2| PREDICTED: atlastin-3 [Sus scrofa].
Length = 523
Score = 634 bits (1634), Expect = 0.0
Identities = 316/330 (95%), Positives = 319/330 (96%), Gaps = 1/330 (0%)
Frame = +2
Query: 317 MEGGKPGPVQVVMVQKDQHSFELEEKALASILLQDHIRDLDVVVVSVAGAFRKGKSFFLD 496
MEGGKPGPVQVVMVQKDQHSFELEEKALASILLQDHIRDLDVVVVSVAGAFRKGKSFFLD
Sbjct: 1 MEGGKPGPVQVVMVQKDQHSFELEEKALASILLQDHIRDLDVVVVSVAGAFRKGKSFFLD 60
Query: 497 FMLRYLYFQKEGGHSNWLGDPEEPLTGFSWRGGSDPETTGIQIWNEVFTVEKPGGKKVAV 676
FMLRYLYFQKEGGHSNWLGDPEEPLTGFSWRGGSDPETTGIQIWNEVFTVEKPGGKKVAV
Sbjct: 61 FMLRYLYFQKEGGHSNWLGDPEEPLTGFSWRGGSDPETTGIQIWNEVFTVEKPGGKKVAV 120
Query: 677 VLMDTQGAFDSQSTVKDCATIFALSTMTSSVQIYNLSQNIQEDDLQQLQLFTEYGRLAMD 856
VLMDTQGAFDSQSTVKDCATIFALSTMTSSVQIYNLSQNIQEDDLQQLQLFTEYGRLAMD
Sbjct: 121 VLMDTQGAFDSQSTVKDCATIFALSTMTSSVQIYNLSQNIQEDDLQQLQLFTEYGRLAMD 180
Query: 857 EIFQKPFQTLMFLVRDWSFPYEYNYGLQGGMSFLEKRLQVKEHQHEEIQNVRNHIHSCFS 1036
EIFQKPFQTLMFLVRDWSFPYEYNYGLQGGMSFLEKRLQVKEHQHEEIQNVRNHIHSCFS
Sbjct: 181 EIFQKPFQTLMFLVRDWSFPYEYNYGLQGGMSFLEKRLQVKEHQHEEIQNVRNHIHSCFS 240
Query: 1037 SVTCFLLPHPGLRVATSPDFDGKLKDIDSEFKEQLQILIPYVLNPANLMEKEINGSKVTC 1216
SVTCFLLPHPGLRVATSPDFDGKLKDIDSEFKEQLQILIPYVLNPANLMEKEINGSKVTC
Sbjct: 241 SVTCFLLPHPGLRVATSPDFDGKLKDIDSEFKEQLQILIPYVLNPANLMEKEINGSKVTC 300
Query: 1217 RGLLEYFRHTLKSTR-ERSASPPVMLQATA 1303
RGLLEYF+ +K + E P MLQATA
Sbjct: 301 RGLLEYFKAYIKIYQGEDLPHPKSMLQATA 330
>ref|XP_003125271.1| PREDICTED: atlastin-2-like, partial [Sus scrofa].
Length = 544
Score = 484 bits (1246), Expect = e-137
Identities = 230/326 (70%), Positives = 280/326 (85%), Gaps = 1/326 (0%)
Frame = +2
Query: 329 KPGPVQVVMVQKDQHSFELEEKALASILLQDHIRDLDVVVVSVAGAFRKGKSFFLDFMLR 508
KP PVQ+V+ +D H+FEL+E+AL ILLQ+HIRDL++VVVSVAGAFRKGKSF LDFMLR
Sbjct: 17 KPCPVQIVLAHEDDHNFELDEEALEQILLQEHIRDLNIVVVSVAGAFRKGKSFLLDFMLR 76
Query: 509 YLYFQKEGGHSNWLGDPEEPLTGFSWRGGSDPETTGIQIWNEVFTVEKPGGKKVAVVLMD 688
Y+Y + +W+G EPLTGF+WRGG + ETTGIQ+WNEVF +++P G KVAV+LMD
Sbjct: 77 YMYNKDS---QSWIGGNNEPLTGFTWRGGCERETTGIQVWNEVFVIDRPNGTKVAVLLMD 133
Query: 689 TQGAFDSQSTVKDCATIFALSTMTSSVQIYNLSQNIQEDDLQQLQLFTEYGRLAMDEIFQ 868
TQGAFDSQST+KDCAT+FALSTMTSSVQ+YNLSQNIQEDDLQ LQLFTEYGRLAM+EI+Q
Sbjct: 134 TQGAFDSQSTIKDCATVFALSTMTSSVQVYNLSQNIQEDDLQHLQLFTEYGRLAMEEIYQ 193
Query: 869 KPFQTLMFLVRDWSFPYEYNYGLQGGMSFLEKRLQVKEHQHEEIQNVRNHIHSCFSSVTC 1048
KPFQTLMFL+RDWS+PYE++YGL+GG FLEKRLQVK++QHEE+QNVR HIH+CFS++ C
Sbjct: 194 KPFQTLMFLIRDWSYPYEHSYGLEGGKQFLEKRLQVKQNQHEELQNVRKHIHNCFSNLGC 253
Query: 1049 FLLPHPGLRVATSPDFDGKLKDIDSEFKEQLQILIPYVLNPANLMEKEINGSKVTCRGLL 1228
FLLPHPGL+VAT+P FDG+LKDID +FK +L+ L+P +L P NL+EKEI+GSKVTCR L+
Sbjct: 254 FLLPHPGLKVATNPSFDGRLKDIDEDFKRELRNLVPLLLAPENLVEKEISGSKVTCRDLV 313
Query: 1229 EYFRHTLKSTR-ERSASPPVMLQATA 1303
EYF+ +K + E P MLQATA
Sbjct: 314 EYFKAYIKIYQGEELPHPKSMLQATA 339
>ref|XP_001925533.3| PREDICTED: atlastin-1, partial [Sus scrofa].
Length = 464
Score = 379 bits (974), Expect = e-105
Identities = 179/255 (70%), Positives = 218/255 (85%), Gaps = 1/255 (0%)
Frame = +2
Query: 542 NWLGDPEEPLTGFSWRGGSDPETTGIQIWNEVFTVEKPGGKKVAVVLMDTQGAFDSQSTV 721
+W+GD EPLTGFSWRGGS+ ETTGIQIW+EVF + KP GKKVAV+LMDTQG FDSQST+
Sbjct: 4 DWVGDYNEPLTGFSWRGGSERETTGIQIWSEVFLINKPDGKKVAVLLMDTQGTFDSQSTL 63
Query: 722 KDCATIFALSTMTSSVQIYNLSQNIQEDDLQQLQLFTEYGRLAMDEIFQKPFQTLMFLVR 901
+D AT+FALSTM SS+Q+YNLSQN+QEDDLQ LQLFTEYGRLAM+E F KPFQ+L+FLVR
Sbjct: 64 RDSATVFALSTMISSIQVYNLSQNVQEDDLQHLQLFTEYGRLAMEETFLKPFQSLIFLVR 123
Query: 902 DWSFPYEYNYGLQGGMSFLEKRLQVKEHQHEEIQNVRNHIHSCFSSVTCFLLPHPGLRVA 1081
DWSFPYE++YG GG FLEKRL+V +QHEE+QNVR HIHSCF+ ++CFLLPHPGL+VA
Sbjct: 124 DWSFPYEFSYGADGGSKFLEKRLKVSGNQHEELQNVRKHIHSCFTKISCFLLPHPGLKVA 183
Query: 1082 TSPDFDGKLKDIDSEFKEQLQILIPYVLNPANLMEKEINGSKVTCRGLLEYFRHTLKSTR 1261
T+P+FDGKLK+ID EF + L+ILIP++L+P +L KEING+K+TCRGL+EYF+ +K +
Sbjct: 184 TNPNFDGKLKEIDEEFIKNLKILIPWLLSPESLDIKEINGNKITCRGLVEYFKAYIKIYQ 243
Query: 1262 -ERSASPPVMLQATA 1303
E P MLQATA
Sbjct: 244 GEELPHPKSMLQATA 258
>ref|XP_003353530.1| PREDICTED: atlastin-1-like [Sus scrofa].
Length = 234
Score = 212 bits (539), Expect = 4e-55
Identities = 108/169 (63%), Positives = 133/169 (78%)
Frame = +2
Query: 329 KPGPVQVVMVQKDQHSFELEEKALASILLQDHIRDLDVVVVSVAGAFRKGKSFFLDFMLR 508
K GPVQV++V KD HSFEL+E AL ILL + +RD +VV VSVAGAFRKGKSF +DFMLR
Sbjct: 31 KAGPVQVLIV-KDDHSFELDETALNRILLSEAVRDKEVVAVSVAGAFRKGKSFLMDFMLR 89
Query: 509 YLYFQKEGGHSNWLGDPEEPLTGFSWRGGSDPETTGIQIWNEVFTVEKPGGKKVAVVLMD 688
Y+Y Q+ +W+GD EPLTGFSWRGGS+ ETTGIQIW+EVF + KP GKKVAV+LMD
Sbjct: 90 YMYNQES---VDWVGDYNEPLTGFSWRGGSERETTGIQIWSEVFLINKPDGKKVAVLLMD 146
Query: 689 TQGAFDSQSTVKDCATIFALSTMTSSVQIYNLSQNIQEDDLQQLQLFTE 835
TQG FDSQST++D AT+FALSTM SS+QI+++ QE+ + + Q E
Sbjct: 147 TQGTFDSQSTLRDSATVFALSTMISSIQIFSIHWKEQEEIVTKKQTIKE 195
>ref|XP_003125970.2| PREDICTED: interferon-induced guanylate-binding protein 2-like
isoform 2 [Sus scrofa].
Length = 591
Score = 64.7 bits (156), Expect = 1e-10
Identities = 69/277 (24%), Positives = 118/277 (42%), Gaps = 16/277 (5%)
Frame = +2
Query: 440 VVVVSVAGAFRKGKSFFLDFMLRYLYFQKEGGHSNWLGDPEEPLTGFSWRGGSDPETTGI 619
+VVV++ G +R GKS+ ++ K G + GFS T GI
Sbjct: 38 LVVVAIVGPYRTGKSYLMN---------KLAGKNK----------GFSLGSTVQSHTKGI 78
Query: 620 QIWNEVFTVEKPGGKKVAVVLMDTQGAFD-SQSTVKDCATIFALSTMTSSVQIYNLSQNI 796
+W V P +VL+DT+G D + ++ + +FAL+ + SS IYN I
Sbjct: 79 WMW----CVPHPRNPDHTLVLLDTEGLGDVEKGDNQNDSWLFALAVLLSSTLIYNSMGTI 134
Query: 797 QEDDLQQLQLFTEY----------GRLAMDEI--FQKPFQTLMFLVRDWSFPYEYNYGLQ 940
+ + QL TE GR + + F F ++ +RD+S E N
Sbjct: 135 NQQAMDQLHYVTELTHCIRAKSSSGRHEVKDSADFVSFFPDFVWTLRDFSLELEANSEPI 194
Query: 941 GGMSFLEKRLQVKEHQHEEIQN---VRNHIHSCFSSVTCFLLPHPGLRVATSPDFDGKLK 1111
+LE L++++ ++ ++ R I F CF+ P R +
Sbjct: 195 IADEYLENSLKLRQGNDKKTKSFNETRLCIRKFFPEKKCFIFDRPAQRKYLVHLEQLPEE 254
Query: 1112 DIDSEFKEQLQILIPYVLNPANLMEKEINGSKVTCRG 1222
D+D EF+EQ++ Y+L+ + + K ++G +T G
Sbjct: 255 DVDPEFREQVEEFCSYILSHSKV--KTLSGG-ITVNG 288
>ref|NP_001121946.1| interferon-induced guanylate-binding protein 2 [Sus scrofa].
Length = 591
Score = 64.3 bits (155), Expect = 1e-10
Identities = 71/277 (25%), Positives = 117/277 (42%), Gaps = 16/277 (5%)
Frame = +2
Query: 440 VVVVSVAGAFRKGKSFFLDFMLRYLYFQKEGGHSNWLGDPEEPLTGFSWRGGSDPETTGI 619
VVVV + G +R GKS YL ++ G + GFS T GI
Sbjct: 38 VVVVVIVGPYRTGKS--------YLMYKLAGKNK-----------GFSLGSTVQSHTKGI 78
Query: 620 QIWNEVFTVEKPGGKKVAVVLMDTQGAFD-SQSTVKDCATIFALSTMTSSVQIYNLSQNI 796
+W V P +VL+DT+G D + ++ + +FAL+ + SS IYN I
Sbjct: 79 WMW----CVPHPRNPDHTLVLLDTEGLGDVEKGDNQNDSWLFALAVLLSSTLIYNSVGTI 134
Query: 797 QEDDLQQLQLFTEY----------GRLAMDEI--FQKPFQTLMFLVRDWSFPYEYNYGLQ 940
+ + QL TE GR + + F F ++ +RD+S + N
Sbjct: 135 NQQAMDQLHYVTELTDCIRAKSSPGRHEVKDSADFVSFFPDFVWTLRDFSLDLQANGEPI 194
Query: 941 GGMSFLEKRLQVKEHQHEEIQNV---RNHIHSCFSSVTCFLLPHPGLRVATSPDFDGKLK 1111
+LE L++K+ ++ ++ R I F CF+ P R +
Sbjct: 195 TPDEYLENSLKLKQGNDKKTKSFNAPRLCIRKFFPEKKCFIFDRPAQRKYLVHLEQLPEE 254
Query: 1112 DIDSEFKEQLQILIPYVLNPANLMEKEINGSKVTCRG 1222
D+D EF+EQ++ Y+L+ + + K ++G +T G
Sbjct: 255 DVDPEFREQVEEFCSYILSHSKV--KTLSGG-ITVNG 288
>ref|NP_001121945.1| interferon-induced guanylate-binding protein 1 [Sus scrofa].
Length = 590
Score = 59.7 bits (143), Expect = 3e-09
Identities = 70/274 (25%), Positives = 113/274 (41%), Gaps = 16/274 (5%)
Frame = +2
Query: 440 VVVVSVAGAFRKGKSFFLDFMLRYLYFQKEGGHSNWLGDPEEPLTGFSWRGGSDPETTGI 619
+VVV++ G +R GKS+ ++ K G + GFS T GI
Sbjct: 38 LVVVAIVGLYRTGKSYLMN---------KLAGKNK----------GFSLGSTVQSHTKGI 78
Query: 620 QIWNEVFTVEKPGGKKVAVVLMDTQGAFD-SQSTVKDCATIFALSTMTSSVQIYNLSQNI 796
+W V P ++ + L+DT+G D + ++ + IFAL+ + SS +YN I
Sbjct: 79 WMW----CVPHPKKREHTLALLDTEGLGDVEKGDNQNDSWIFALAILLSSTFVYNSMGTI 134
Query: 797 QEDDLQQLQLFTEY-----GRLAMDE------IFQKPFQTLMFLVRDWSFPYEYNYGLQG 943
+ + QL TE + DE F F ++ +RD+S E +
Sbjct: 135 NQQAMDQLHYVTELTERIRAKSEPDEGIEDSADFVSFFPDFVWTLRDFSLDLETDGESIT 194
Query: 944 GMSFLEKRLQVKEHQHEEIQNV---RNHIHSCFSSVTCFLLPHPGLRVATSPDFDGKLKD 1114
+LE L++K+ ++ +N R I F CF+ P R D +
Sbjct: 195 ADEYLENSLKLKKGTSQKDKNFNLPRLCIRKFFPKKKCFIFDRPTQRKKLGQLEDLGDDE 254
Query: 1115 IDSEFKEQLQILIPYVLNPANLMEKEINGS-KVT 1213
+DSEF +Q Y+ N K ++G KVT
Sbjct: 255 LDSEFVQQAAEFCSYIF--LNSKTKTLSGGIKVT 286
>ref|XP_003355347.1| PREDICTED: guanylate-binding protein 6 [Sus scrofa].
Length = 639
Score = 57.0 bits (136), Expect = 2e-08
Identities = 64/262 (24%), Positives = 105/262 (40%), Gaps = 17/262 (6%)
Frame = +2
Query: 440 VVVVSVAGAFRKGKSFFLDFMLRYLYFQKEGGHSNWLGDPEEPLTGFSWRGGSDPETTGI 619
VVVV++ G +R GKS+ ++ + G ++ GF ET GI
Sbjct: 38 VVVVAIVGLYRTGKSYLMNRL---------AGRNH----------GFRLGSTVQSETKGI 78
Query: 620 QIWNEVFTVEKPGGKKVAVVLMDTQGAFD-SQSTVKDCATIFALSTMTSSVQIYNLSQNI 796
+W V P +VL+DT+G D + K+ + IFAL+ + SSV +YN + I
Sbjct: 79 WMW----CVPHPSKPDCTLVLLDTEGLGDVEKGDPKNDSWIFALAVLLSSVFVYNSTNTI 134
Query: 797 QEDDLQQLQLFTEYGRLAMDEI------------FQKPFQTLMFLVRDWSFPYEYNYGLQ 940
L+QL E L + F F +++VRD++ + +
Sbjct: 135 NHQALEQLHYVAELTELIRTKSSSENDGVEDCTEFVSFFPDFIWIVRDFTLDLKLHGHPV 194
Query: 941 GGMSFLEKRLQV--KEHQHEEIQNV-RNHIHSCFSSVTCFLLPHPGLRVATSPDFDGKLK 1111
+LE L++ + I N+ R I F CF+ P + +
Sbjct: 195 TEDEYLENALKLIPGNNPKARISNLPRECIRHFFPKRKCFVFDRPTHDKDLLANIENVSD 254
Query: 1112 D-IDSEFKEQLQILIPYVLNPA 1174
D +D +F+EQ Y+ A
Sbjct: 255 DQLDPKFQEQANNFCSYIFTNA 276
>ref|XP_003125968.2| PREDICTED: guanylate-binding protein 5-like [Sus scrofa].
Length = 586
Score = 48.9 bits (115), Expect = 6e-06
Identities = 60/261 (22%), Positives = 98/261 (37%), Gaps = 18/261 (6%)
Frame = +2
Query: 440 VVVVSVAGAFRKGKSFFLDFMLRYLYFQKEGGHSNWLGDPEEPLTGFSWRGGSDPETTGI 619
+VVV++ G +R GKS+ ++ K G + GFS T GI
Sbjct: 38 LVVVAIVGLYRTGKSYLMN---------KLAGKNK----------GFSVGSTVQSHTKGI 78
Query: 620 QIWNEVFTVEKPGGKKVAVVLMDTQGAFD-SQSTVKDCATIFALSTMTSSVQIYNLSQNI 796
+W V P +VL+DT+G D + K+ IF L+ + SS +YN I
Sbjct: 79 WMW----CVPHPRKPDHTLVLLDTEGLGDVEKGDKKNDTQIFVLALLLSSTFVYNTMNKI 134
Query: 797 QEDDLQQLQLFTEYGRLAM--------------DEIFQKPFQTLMFLVRDWSFPYEYNYG 934
+ + L E D + P L++ +RD+ E N
Sbjct: 135 DQRAIDLLHYVAELATWLQTVSSTDADEVSGPEDSVSNCP--DLVWTLRDFFLDLEVNGH 192
Query: 935 LQGGMSFLEKRLQVKEHQHEEIQNV---RNHIHSCFSSVTCFLLPHPGLRVATSPDFDGK 1105
+LE L+ K + +QN R I F + CF+ P R +
Sbjct: 193 PITTDEYLENSLRPKPGADKSLQNFNLPRQCIQKFFPTKKCFIFDSPTHRKKLAQLETLH 252
Query: 1106 LKDIDSEFKEQLQILIPYVLN 1168
D++ +F +Q+ Y+ +
Sbjct: 253 DDDLEPDFVQQVAEFCSYIFS 273
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 33,564,191
Number of extensions: 994853
Number of successful extensions: 5567
Number of sequences better than 1.0e-05: 9
Number of HSP's gapped: 5385
Number of HSP's successfully gapped: 9
Length of query: 435
Length of database: 11,343,932
Length adjustment: 102
Effective length of query: 333
Effective length of database: 8,804,438
Effective search space: 2931877854
Effective search space used: 2931877854
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003950
(1305 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr02 569 e-159
gb|GL895062.2| Sus scrofa unplaced genomic scaffold ChrUScaf2946 430 e-118
Sscrofa_Chr10 68 1e-08
>Sscrofa_Chr02
|| Length = 162569375
Score = 569 bits (287), Expect = e-159
Identities = 305/311 (98%)
Strand = Plus / Plus
Query: 2 gcgcgtcgggcggtggcgggattcggccgcgtgtgctctccagccccagctcgccctgcg 61
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 7721249 gcgcgtcgggcggtggcgggattcggccgcgtgtgctctccagccccagcccgccctgcg 7721308
Query: 62 ctcgcggctctttgggcggccggtccagtcctgccagccagcgttgtggttgctctctcg 121
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 7721309 ctcgcggctctttgggcggccggtcgagtcctgccagccagcgttgtggttgctctctcg 7721368
Query: 122 cggctctgcgcgcccctccttccccccagtttcctccagaggccaggccccgcccgtttc 181
|||||||||||||||||||||| |||||||||| || |||||||||||||||||||||||
Sbjct: 7721369 cggctctgcgcgcccctccttctccccagtttcttctagaggccaggccccgcccgtttc 7721428
Query: 182 ccgtctcccgggcctggttcgttcccgccccagcccgcccctctctgtgcccctgctgcc 241
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7721429 ccgtctccagggcctggttcgttcccgccccagcccgcccctctctgtgcccctgctgcc 7721488
Query: 242 tctgctggaggcggaggctccatgttgtcccctcagcgagcggtagcggctgcatcgcga 301
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7721489 tctgctggaggcggaggctccatgttgtcccctcagcgagcggtagcggctgcatcgcga 7721548
Query: 302 ggagcaggtga 312
|||||||||||
Sbjct: 7721549 ggagcaggtga 7721559
Score = 430 bits (217), Expect = e-118
Identities = 217/217 (100%)
Strand = Plus / Plus
Query: 307 aggtgatgccatggagggtggaaagcctggtcccgtgcaggttgttatggttcagaaaga 366
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7615359 aggtgatgccatggagggtggaaagcctggtcccgtgcaggttgttatggttcagaaaga 7615418
Query: 367 ccaacattcctttgagctagaagagaaagccttggccagcatcctcttacaggaccacat 426
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7615419 ccaacattcctttgagctagaagagaaagccttggccagcatcctcttacaggaccacat 7615478
Query: 427 ccgagaccttgatgtggtggtggtgtcggtggctggtgccttccgaaagggcaagtcctt 486
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7615479 ccgagaccttgatgtggtggtggtgtcggtggctggtgccttccgaaagggcaagtcctt 7615538
Query: 487 ctttctggactttatgctgcgatacttatatttccag 523
|||||||||||||||||||||||||||||||||||||
Sbjct: 7615539 ctttctggactttatgctgcgatacttatatttccag 7615575
Score = 287 bits (145), Expect = 8e-75
Identities = 148/149 (99%)
Strand = Plus / Plus
Query: 521 cagaaggaaggtggccattcaaattggttgggtgaccccgaagaaccgttaacagggttt 580
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 7615715 cagaaggaaggtggccattcaaattggttgggtgacccagaagaaccgttaacagggttt 7615774
Query: 581 tcatggagagggggctctgacccagaaaccactgggattcagatctggaatgaagtgttc 640
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7615775 tcatggagagggggctctgacccagaaaccactgggattcagatctggaatgaagtgttc 7615834
Query: 641 actgtggagaagccaggcgggaagaaggt 669
|||||||||||||||||||||||||||||
Sbjct: 7615835 actgtggagaagccaggcgggaagaaggt 7615863
Score = 274 bits (138), Expect = 1e-70
Identities = 141/142 (99%)
Strand = Plus / Plus
Query: 971 caggtgaaagaacatcaacatgaagaaattcagaacgtccgaaatcacattcactcctgt 1030
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7630684 caggtgaaagaacatcaacatgaagaaattcagaacgtccgaaatcacattcactcctgt 7630743
Query: 1031 ttctccagtgtcacctgtttcctcctcccacatccaggactccgggtggccacaagccct 1090
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7630744 ttctccagtgtcacctgtttcctcctcccacatccaggactccgggtggccacaagccct 7630803
Query: 1091 gactttgacggcaaattgaaag 1112
|||||||| |||||||||||||
Sbjct: 7630804 gactttgatggcaaattgaaag 7630825
Score = 254 bits (128), Expect = 1e-64
Identities = 128/128 (100%)
Strand = Plus / Plus
Query: 1111 agatattgatagtgaattcaaagagcagttacagatactgataccatatgtattaaaccc 1170
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7640655 agatattgatagtgaattcaaagagcagttacagatactgataccatatgtattaaaccc 7640714
Query: 1171 agctaacttaatggaaaaggaaatcaatggctcaaaagtcacctgtcgggggctactgga 1230
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7640715 agctaacttaatggaaaaggaaatcaatggctcaaaagtcacctgtcgggggctactgga 7640774
Query: 1231 gtatttta 1238
||||||||
Sbjct: 7640775 gtatttta 7640782
Score = 212 bits (107), Expect = 4e-52
Identities = 107/107 (100%)
Strand = Plus / Plus
Query: 666 aggttgcagttgttctgatggacacccagggtgcatttgacagccagtccactgtgaaag 725
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7617772 aggttgcagttgttctgatggacacccagggtgcatttgacagccagtccactgtgaaag 7617831
Query: 726 actgtgctaccatctttgctctaagcaccatgactagttctgttcag 772
|||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7617832 actgtgctaccatctttgctctaagcaccatgactagttctgttcag 7617878
Score = 192 bits (97), Expect = 3e-46
Identities = 97/97 (100%)
Strand = Plus / Plus
Query: 879 agacactgatgtttttggttcgagactggagtttcccttatgaatacaactatggactac 938
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7629758 agacactgatgtttttggttcgagactggagtttcccttatgaatacaactatggactac 7629817
Query: 939 aaggaggaatgtcatttttggagaagcgtctacaggt 975
|||||||||||||||||||||||||||||||||||||
Sbjct: 7629818 aaggaggaatgtcatttttggagaagcgtctacaggt 7629854
Score = 117 bits (59), Expect = 2e-23
Identities = 59/59 (100%)
Strand = Plus / Plus
Query: 822 agctcttcacagaatatggtcgtctagcgatggatgaaattttccaaaagcccttccag 880
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7628881 agctcttcacagaatatggtcgtctagcgatggatgaaattttccaaaagcccttccag 7628939
Score = 89.7 bits (45), Expect = 4e-15
Identities = 51/53 (96%)
Strand = Plus / Plus
Query: 771 agatttataatttgtctcagaacattcaggaagatgatcttcaacagctacag 823
|||||||||| ||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 7618357 agatttataacttgtcccagaacattcaggaagatgatcttcaacagctacag 7618409
Score = 67.9 bits (34), Expect = 1e-08
Identities = 54/58 (93%), Gaps = 2/58 (3%)
Strand = Plus / Plus
Query: 1238 aggcatacattaaaatctaccagggag-agatctgcctcacccccagt-catgcttca 1293
|||||||||||||||||||||| |||| |||||||||||||||| ||| |||||||||
Sbjct: 7641404 aggcatacattaaaatctaccaaggagaagatctgcctcaccccaagtccatgcttca 7641461
>gb|GL895062.2| Sus scrofa unplaced genomic scaffold ChrUScaf2946
Length = 7842
Score = 430 bits (217), Expect = e-118
Identities = 217/217 (100%)
Strand = Plus / Plus
Query: 307 aggtgatgccatggagggtggaaagcctggtcccgtgcaggttgttatggttcagaaaga 366
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7302 aggtgatgccatggagggtggaaagcctggtcccgtgcaggttgttatggttcagaaaga 7361
Query: 367 ccaacattcctttgagctagaagagaaagccttggccagcatcctcttacaggaccacat 426
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7362 ccaacattcctttgagctagaagagaaagccttggccagcatcctcttacaggaccacat 7421
Query: 427 ccgagaccttgatgtggtggtggtgtcggtggctggtgccttccgaaagggcaagtcctt 486
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7422 ccgagaccttgatgtggtggtggtgtcggtggctggtgccttccgaaagggcaagtcctt 7481
Query: 487 ctttctggactttatgctgcgatacttatatttccag 523
|||||||||||||||||||||||||||||||||||||
Sbjct: 7482 ctttctggactttatgctgcgatacttatatttccag 7518
Score = 295 bits (149), Expect = 3e-77
Identities = 149/149 (100%)
Strand = Plus / Plus
Query: 521 cagaaggaaggtggccattcaaattggttgggtgaccccgaagaaccgttaacagggttt 580
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7658 cagaaggaaggtggccattcaaattggttgggtgaccccgaagaaccgttaacagggttt 7717
Query: 581 tcatggagagggggctctgacccagaaaccactgggattcagatctggaatgaagtgttc 640
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7718 tcatggagagggggctctgacccagaaaccactgggattcagatctggaatgaagtgttc 7777
Query: 641 actgtggagaagccaggcgggaagaaggt 669
|||||||||||||||||||||||||||||
Sbjct: 7778 actgtggagaagccaggcgggaagaaggt 7806
>Sscrofa_Chr10
|| Length = 79102373
Score = 67.9 bits (34), Expect = 1e-08
Identities = 54/58 (93%), Gaps = 2/58 (3%)
Strand = Plus / Plus
Query: 1238 aggcatacattaaaatctaccagggag-agatctgcctcacccccagt-catgcttca 1293
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Sbjct: 9818213 aggcatacattaaaatctaccaaggagaagatctgcctcaccccaagtccatgcttca 9818270
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 39,247,851
Number of extensions: 312
Number of successful extensions: 312
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 312
Number of HSP's successfully gapped: 13
Length of query: 1305
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1284
Effective length of database: 2,808,413,156
Effective search space: 3606002492304
Effective search space used: 3606002492304
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)