Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003953
(991 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001192767.1| probable 2-oxoglutarate dehydrogenase E1 com... 478 e-147
Alignment gi|XP_002692095.1| PREDICTED: dehydrogenase E1 and transketolas... 478 e-147
Alignment gi|NP_001179635.1| 2-oxoglutarate dehydrogenase-like, mitochond... 92 9e-19
Alignment gi|XP_002699017.1| PREDICTED: oxoglutarate dehydrogenase-like i... 92 9e-19
Alignment gi|XP_002699018.1| PREDICTED: oxoglutarate dehydrogenase-like i... 89 6e-18
Alignment gi|XP_002703453.1| PREDICTED: oxoglutarate dehydrogenase-like [... 89 6e-18
Alignment gi|NP_001069498.1| 2-oxoglutarate dehydrogenase, mitochondrial ... 88 1e-17
>ref|NP_001192767.1| probable 2-oxoglutarate dehydrogenase E1 component DHKTD1,
mitochondrial [Bos taurus].
Length = 921
Score = 478 bits (1230), Expect(2) = e-147
Identities = 241/254 (94%), Positives = 243/254 (95%), Gaps = 1/254 (0%)
Frame = +1
Query: 133 MALATVAAARLGLSRA-PSLLRRGYQTERGVYGYRPRKRESREPQGGLARPPVDHGLARL 309
MA VAAARLGL RA P LRRGYQTERGVYGYRPRK ESREP+GGLARPPVDHGLARL
Sbjct: 1 MAWVAVAAARLGLGRASPLFLRRGYQTERGVYGYRPRKPESREPEGGLARPPVDHGLARL 60
Query: 310 VTVYCEHGHKAAKINPLFTGQALQENVPEIQALVQTLQGPFNTAGLLNMGKEEASLEEVV 489
VTVYCEHGHKAAKINPLFTGQALQENVPEIQALVQTLQGPFNT GLLNMGKEEASLEEVV
Sbjct: 61 VTVYCEHGHKAAKINPLFTGQALQENVPEIQALVQTLQGPFNTTGLLNMGKEEASLEEVV 120
Query: 490 AYLNQIYCGQISIETSQLQSQEEKDWFAKRFEELKKEAFTTEERKHLSKLMLESQAFDHF 669
AYLNQIYCGQISIETSQLQSQEEKDWFAKRFEELKKEAFTTEERKHLSKLMLESQ FDHF
Sbjct: 121 AYLNQIYCGQISIETSQLQSQEEKDWFAKRFEELKKEAFTTEERKHLSKLMLESQEFDHF 180
Query: 670 LATKFATVKRYGGEGAESMMGFFYELLRTAAYSGVTDVIIGMPHRGRLNLLTGLLQFPPE 849
LATKFATVKRYGGEGAESMMGFFYELL+ AAYSGVTDVIIGMPHRGRLNLLTGLLQFPPE
Sbjct: 181 LATKFATVKRYGGEGAESMMGFFYELLKMAAYSGVTDVIIGMPHRGRLNLLTGLLQFPPE 240
Query: 850 LMFRKMRGLSEFPE 891
LMFRKMRGLSEFPE
Sbjct: 241 LMFRKMRGLSEFPE 254
Score = 63.2 bits (152), Expect(2) = e-147
Identities = 29/33 (87%), Positives = 30/33 (90%)
Frame = +3
Query: 891 NVSHVGDVLSHLTSSVDLXFGAHHPPHVTMLPN 989
N+S VGDVLSHLTSSVDL FGAHHP HVTMLPN
Sbjct: 255 NISAVGDVLSHLTSSVDLDFGAHHPLHVTMLPN 287
>ref|XP_002692095.1| PREDICTED: dehydrogenase E1 and transketolase domain containing
1-like [Bos taurus].
Length = 921
Score = 478 bits (1230), Expect(2) = e-147
Identities = 241/254 (94%), Positives = 243/254 (95%), Gaps = 1/254 (0%)
Frame = +1
Query: 133 MALATVAAARLGLSRA-PSLLRRGYQTERGVYGYRPRKRESREPQGGLARPPVDHGLARL 309
MA VAAARLGL RA P LRRGYQTERGVYGYRPRK ESREP+GGLARPPVDHGLARL
Sbjct: 1 MAWVAVAAARLGLGRASPLFLRRGYQTERGVYGYRPRKPESREPEGGLARPPVDHGLARL 60
Query: 310 VTVYCEHGHKAAKINPLFTGQALQENVPEIQALVQTLQGPFNTAGLLNMGKEEASLEEVV 489
VTVYCEHGHKAAKINPLFTGQALQENVPEIQALVQTLQGPFNT GLLNMGKEEASLEEVV
Sbjct: 61 VTVYCEHGHKAAKINPLFTGQALQENVPEIQALVQTLQGPFNTTGLLNMGKEEASLEEVV 120
Query: 490 AYLNQIYCGQISIETSQLQSQEEKDWFAKRFEELKKEAFTTEERKHLSKLMLESQAFDHF 669
AYLNQIYCGQISIETSQLQSQEEKDWFAKRFEELKKEAFTTEERKHLSKLMLESQ FDHF
Sbjct: 121 AYLNQIYCGQISIETSQLQSQEEKDWFAKRFEELKKEAFTTEERKHLSKLMLESQEFDHF 180
Query: 670 LATKFATVKRYGGEGAESMMGFFYELLRTAAYSGVTDVIIGMPHRGRLNLLTGLLQFPPE 849
LATKFATVKRYGGEGAESMMGFFYELL+ AAYSGVTDVIIGMPHRGRLNLLTGLLQFPPE
Sbjct: 181 LATKFATVKRYGGEGAESMMGFFYELLKMAAYSGVTDVIIGMPHRGRLNLLTGLLQFPPE 240
Query: 850 LMFRKMRGLSEFPE 891
LMFRKMRGLSEFPE
Sbjct: 241 LMFRKMRGLSEFPE 254
Score = 63.2 bits (152), Expect(2) = e-147
Identities = 29/33 (87%), Positives = 30/33 (90%)
Frame = +3
Query: 891 NVSHVGDVLSHLTSSVDLXFGAHHPPHVTMLPN 989
N+S VGDVLSHLTSSVDL FGAHHP HVTMLPN
Sbjct: 255 NISAVGDVLSHLTSSVDLDFGAHHPLHVTMLPN 287
>ref|NP_001179635.1| 2-oxoglutarate dehydrogenase-like, mitochondrial [Bos taurus].
Length = 1010
Score = 91.7 bits (226), Expect = 9e-19
Identities = 59/205 (28%), Positives = 100/205 (48%), Gaps = 15/205 (7%)
Frame = +1
Query: 289 DH-GLARLVTVYCEHGHKAAKINPLFTGQA-LQENVP-------------EIQALVQTLQ 423
DH + L+ Y GH A+++PL A L VP ++Q +
Sbjct: 113 DHLAVQSLIRAYQIRGHHVAQLDPLGILDADLDSFVPSDLITTVDKLAFYDLQEADLDKE 172
Query: 424 GPFNTAGLLNMGKEEASLEEVVAYLNQIYCGQISIETSQLQSQEEKDWFAKRFEELKKEA 603
T + + SL E++ L YC I +E + E+ W ++FE
Sbjct: 173 FQLPTTTFIGGSENTLSLREIIRRLESTYCQHIGLEFMFINDVEQCQWIRQKFESPGVMQ 232
Query: 604 FTTEERKHLSKLMLESQAFDHFLATKFATVKRYGGEGAESMMGFFYELLRTAAYSGVTDV 783
F++EE++ L ++ S F+ FLA K+++ KR+G EG E M+ ++ ++ G+ +V
Sbjct: 233 FSSEEKRTLLARLVRSMRFEDFLARKWSSEKRFGLEGCEVMIPALKTIIDKSSEMGIENV 292
Query: 784 IIGMPHRGRLNLLTGLLQFPPELMF 858
I+GMPHRGRLN+L +++ E +F
Sbjct: 293 ILGMPHRGRLNVLANVIRKDLEQIF 317
>ref|XP_002699017.1| PREDICTED: oxoglutarate dehydrogenase-like isoform 1 [Bos taurus].
Length = 1010
Score = 91.7 bits (226), Expect = 9e-19
Identities = 59/205 (28%), Positives = 100/205 (48%), Gaps = 15/205 (7%)
Frame = +1
Query: 289 DH-GLARLVTVYCEHGHKAAKINPLFTGQA-LQENVP-------------EIQALVQTLQ 423
DH + L+ Y GH A+++PL A L VP ++Q +
Sbjct: 113 DHLAVQSLIRAYQIRGHHVAQLDPLGILDADLDSFVPSDLITTVDKLAFYDLQEADLDKE 172
Query: 424 GPFNTAGLLNMGKEEASLEEVVAYLNQIYCGQISIETSQLQSQEEKDWFAKRFEELKKEA 603
T + + SL E++ L YC I +E + E+ W ++FE
Sbjct: 173 FQLPTTTFIGGSENTLSLREIIRRLESTYCQHIGLEFMFINDVEQCQWIRQKFESPGVMQ 232
Query: 604 FTTEERKHLSKLMLESQAFDHFLATKFATVKRYGGEGAESMMGFFYELLRTAAYSGVTDV 783
F++EE++ L ++ S F+ FLA K+++ KR+G EG E M+ ++ ++ G+ +V
Sbjct: 233 FSSEEKRTLLARLVRSMRFEDFLARKWSSEKRFGLEGCEVMIPALKTIIDKSSEMGIENV 292
Query: 784 IIGMPHRGRLNLLTGLLQFPPELMF 858
I+GMPHRGRLN+L +++ E +F
Sbjct: 293 ILGMPHRGRLNVLANVIRKDLEQIF 317
>ref|XP_002699018.1| PREDICTED: oxoglutarate dehydrogenase-like isoform 2 [Bos taurus].
Length = 953
Score = 89.0 bits (219), Expect = 6e-18
Identities = 45/141 (31%), Positives = 78/141 (55%)
Frame = +1
Query: 436 TAGLLNMGKEEASLEEVVAYLNQIYCGQISIETSQLQSQEEKDWFAKRFEELKKEAFTTE 615
T + + SL E++ L YC I +E + E+ W ++FE F++E
Sbjct: 120 TTTFIGGSENTLSLREIIRRLESTYCQHIGLEFMFINDVEQCQWIRQKFESPGVMQFSSE 179
Query: 616 ERKHLSKLMLESQAFDHFLATKFATVKRYGGEGAESMMGFFYELLRTAAYSGVTDVIIGM 795
E++ L ++ S F+ FLA K+++ KR+G EG E M+ ++ ++ G+ +VI+GM
Sbjct: 180 EKRTLLARLVRSMRFEDFLARKWSSEKRFGLEGCEVMIPALKTIIDKSSEMGIENVILGM 239
Query: 796 PHRGRLNLLTGLLQFPPELMF 858
PHRGRLN+L +++ E +F
Sbjct: 240 PHRGRLNVLANVIRKDLEQIF 260
>ref|XP_002703453.1| PREDICTED: oxoglutarate dehydrogenase-like [Bos taurus].
Length = 953
Score = 89.0 bits (219), Expect = 6e-18
Identities = 45/141 (31%), Positives = 78/141 (55%)
Frame = +1
Query: 436 TAGLLNMGKEEASLEEVVAYLNQIYCGQISIETSQLQSQEEKDWFAKRFEELKKEAFTTE 615
T + + SL E++ L YC I +E + E+ W ++FE F++E
Sbjct: 120 TTTFIGGSENTLSLREIIRRLESTYCQHIGLEFMFINDVEQCQWIRQKFESPGVMQFSSE 179
Query: 616 ERKHLSKLMLESQAFDHFLATKFATVKRYGGEGAESMMGFFYELLRTAAYSGVTDVIIGM 795
E++ L ++ S F+ FLA K+++ KR+G EG E M+ ++ ++ G+ +VI+GM
Sbjct: 180 EKRTLLARLVRSMRFEDFLARKWSSEKRFGLEGCEVMIPALKTIIDKSSEMGIENVILGM 239
Query: 796 PHRGRLNLLTGLLQFPPELMF 858
PHRGRLN+L +++ E +F
Sbjct: 240 PHRGRLNVLANVIRKDLEQIF 260
>ref|NP_001069498.1| 2-oxoglutarate dehydrogenase, mitochondrial precursor [Bos taurus].
Length = 1023
Score = 87.8 bits (216), Expect = 1e-17
Identities = 63/216 (29%), Positives = 107/216 (49%), Gaps = 15/216 (6%)
Frame = +1
Query: 256 EPQGGLARPPVDH-GLARLVTVYCEHGHKAAKINPLFTGQA-LQENVPE----------I 399
E Q + + DH + L+ Y GH A+++PL A L +VP
Sbjct: 115 EAQPNVDKLVEDHLAVQSLIRAYQIRGHHVAQLDPLGILDADLDSSVPADIISSTDKLGF 174
Query: 400 QALVQT-LQGPFNTAGLLNMGKEEASL--EEVVAYLNQIYCGQISIETSQLQSQEEKDWF 570
L ++ L F+ +G +E++L E++ L YC I +E + E+ W
Sbjct: 175 YGLDESDLDKVFHLPTTTFIGGQESALPLREIIRRLEMAYCQHIGVEFMFINDLEQCQWI 234
Query: 571 AKRFEELKKEAFTTEERKHLSKLMLESQAFDHFLATKFATVKRYGGEGAESMMGFFYELL 750
++FE FT EE++ L ++ S F+ FL K+++ KR+G EG E ++ ++
Sbjct: 235 RQKFETPGVMQFTNEEKRTLLARLVRSTRFEEFLQRKWSSEKRFGLEGCEVLIPALKTII 294
Query: 751 RTAAYSGVTDVIIGMPHRGRLNLLTGLLQFPPELMF 858
++ +GV VI+GMPHRGRLN+L +++ E +F
Sbjct: 295 DKSSENGVDYVIMGMPHRGRLNVLANVIRKELEQIF 330
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 38,572,334
Number of extensions: 1057889
Number of successful extensions: 4034
Number of sequences better than 1.0e-05: 7
Number of HSP's gapped: 4028
Number of HSP's successfully gapped: 9
Length of query: 330
Length of database: 17,681,374
Length adjustment: 103
Effective length of query: 227
Effective length of database: 14,273,310
Effective search space: 3240041370
Effective search space used: 3240041370
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003953
(991 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_535192.2| PREDICTED: similar to dehydrogenase E1 and tran... 462 e-142
Alignment gi|XP_534945.2| PREDICTED: similar to oxoglutarate dehydrogenas... 92 1e-18
Alignment gi|XP_532722.2| PREDICTED: similar to oxoglutarate (alpha-ketog... 85 1e-16
>ref|XP_535192.2| PREDICTED: similar to dehydrogenase E1 and transketolase domain
containing protein 1 [Canis familiaris].
Length = 1115
Score = 462 bits (1188), Expect(2) = e-142
Identities = 229/255 (89%), Positives = 243/255 (95%), Gaps = 1/255 (0%)
Frame = +1
Query: 130 NMALATVAAARLGLSRAPSLL-RRGYQTERGVYGYRPRKRESREPQGGLARPPVDHGLAR 306
+MA ATV AAR G RAP LL RRGYQTE+GVYGYRPRK ES+EP+GGLARPPVDHGLAR
Sbjct: 195 DMAAATVTAARRGFCRAPPLLLRRGYQTEKGVYGYRPRKPESQEPRGGLARPPVDHGLAR 254
Query: 307 LVTVYCEHGHKAAKINPLFTGQALQENVPEIQALVQTLQGPFNTAGLLNMGKEEASLEEV 486
LVTVYCEHGHKAAKINPLF+GQALQE+VPEIQAL+ T+QGPFNT+GLLNMGKEEASLEEV
Sbjct: 255 LVTVYCEHGHKAAKINPLFSGQALQEDVPEIQALLSTVQGPFNTSGLLNMGKEEASLEEV 314
Query: 487 VAYLNQIYCGQISIETSQLQSQEEKDWFAKRFEELKKEAFTTEERKHLSKLMLESQAFDH 666
+AYLNQIYCGQISIETSQLQSQEEKDWFAKRFEELKKE FTTEERKHLSKLMLESQ FDH
Sbjct: 315 LAYLNQIYCGQISIETSQLQSQEEKDWFAKRFEELKKETFTTEERKHLSKLMLESQEFDH 374
Query: 667 FLATKFATVKRYGGEGAESMMGFFYELLRTAAYSGVTDVIIGMPHRGRLNLLTGLLQFPP 846
FLATKFATVKRYGGEGAESMMGFF+ELL+ +AYSG+TDVIIGMPHRGRLNLLTGLLQFPP
Sbjct: 375 FLATKFATVKRYGGEGAESMMGFFHELLKMSAYSGITDVIIGMPHRGRLNLLTGLLQFPP 434
Query: 847 ELMFRKMRGLSEFPE 891
ELMFRKMRGLSEFPE
Sbjct: 435 ELMFRKMRGLSEFPE 449
Score = 62.0 bits (149), Expect(2) = e-142
Identities = 29/33 (87%), Positives = 29/33 (87%)
Frame = +3
Query: 891 NVSHVGDVLSHLTSSVDLXFGAHHPPHVTMLPN 989
NVS GDVLSHLTSSVDL FGAHHP HVTMLPN
Sbjct: 450 NVSATGDVLSHLTSSVDLDFGAHHPLHVTMLPN 482
>ref|XP_534945.2| PREDICTED: similar to oxoglutarate dehydrogenase-like [Canis
familiaris].
Length = 1115
Score = 91.7 bits (226), Expect = 1e-18
Identities = 61/207 (29%), Positives = 101/207 (48%), Gaps = 17/207 (8%)
Frame = +1
Query: 289 DH-GLARLVTVYCEHGHKAAKINPLFTGQA-LQENVPEIQALVQTL-------------- 420
DH + L+ Y GH A+++PL A L VP L+ T+
Sbjct: 218 DHLAVQSLIRAYQIRGHHVAQLDPLGILDADLDSFVPS--DLITTIDKLAFYDLREADLD 275
Query: 421 -QGPFNTAGLLNMGKEEASLEEVVAYLNQIYCGQISIETSQLQSQEEKDWFAKRFEELKK 597
+ T + + SL E++ L YC I +E + E+ W K+FE
Sbjct: 276 KEFQLPTTTFIGGSEHTLSLREIIRRLESTYCQHIGLEFMFINDVEQCQWIRKKFETPGV 335
Query: 598 EAFTTEERKHLSKLMLESQAFDHFLATKFATVKRYGGEGAESMMGFFYELLRTAAYSGVT 777
F++EE++ L ++ S F+ FLA K+++ KR+G EG E M+ ++ ++ G+
Sbjct: 336 MQFSSEEKRTLLARLVRSMRFEDFLARKWSSEKRFGLEGCEVMIPALKTIIDKSSEMGIE 395
Query: 778 DVIIGMPHRGRLNLLTGLLQFPPELMF 858
+VI+GMPHRGRLN+L +++ E +F
Sbjct: 396 NVILGMPHRGRLNVLANVIRKDLEQIF 422
>ref|XP_532722.2| PREDICTED: similar to oxoglutarate (alpha-ketoglutarate)
dehydrogenase (lipoamide) isoform 1 precursor [Canis
familiaris].
Length = 881
Score = 84.7 bits (208), Expect = 1e-16
Identities = 46/135 (34%), Positives = 76/135 (56%), Gaps = 1/135 (0%)
Frame = +1
Query: 457 GKEEA-SLEEVVAYLNQIYCGQISIETSQLQSQEEKDWFAKRFEELKKEAFTTEERKHLS 633
G+E A L E++ L YC I +E + E+ W ++FE FT EE++ L
Sbjct: 173 GQESALPLREIIRRLEMAYCQHIGVEFMFINDLEQCQWIRQKFETPGIMQFTNEEKRTLL 232
Query: 634 KLMLESQAFDHFLATKFATVKRYGGEGAESMMGFFYELLRTAAYSGVTDVIIGMPHRGRL 813
++ S F+ FL K+++ KR+G EG E ++ ++ ++ +GV VI+GMPHRGRL
Sbjct: 233 ARLVRSTRFEDFLQRKWSSEKRFGLEGCEVLIPALKTIIDKSSENGVDYVIMGMPHRGRL 292
Query: 814 NLLTGLLQFPPELMF 858
N+L +++ E +F
Sbjct: 293 NVLANVIRKELEQIF 307
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 40,457,288
Number of extensions: 1102120
Number of successful extensions: 4205
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 4200
Number of HSP's successfully gapped: 4
Length of query: 330
Length of database: 18,874,504
Length adjustment: 103
Effective length of query: 227
Effective length of database: 15,440,896
Effective search space: 3505083392
Effective search space used: 3505083392
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003953
(991 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_061176.3| probable 2-oxoglutarate dehydrogenase E1 compon... 459 e-141
Alignment gi|NP_060715.2| 2-oxoglutarate dehydrogenase-like, mitochondria... 91 1e-18
Alignment gi|NP_001158508.1| 2-oxoglutarate dehydrogenase, mitochondrial ... 89 5e-18
Alignment gi|NP_001137468.1| 2-oxoglutarate dehydrogenase-like, mitochond... 89 8e-18
Alignment gi|NP_002532.2| 2-oxoglutarate dehydrogenase, mitochondrial iso... 87 2e-17
Alignment gi|NP_001003941.1| 2-oxoglutarate dehydrogenase, mitochondrial ... 87 2e-17
Alignment gi|NP_001137469.1| 2-oxoglutarate dehydrogenase-like, mitochond... 74 3e-13
>ref|NP_061176.3| probable 2-oxoglutarate dehydrogenase E1 component DHKTD1,
mitochondrial precursor [Homo sapiens].
Length = 919
Score = 459 bits (1182), Expect(2) = e-141
Identities = 229/253 (90%), Positives = 238/253 (94%)
Frame = +1
Query: 133 MALATVAAARLGLSRAPSLLRRGYQTERGVYGYRPRKRESREPQGGLARPPVDHGLARLV 312
MA AT AAAR GL RA LL RGYQTERGVYGYRPRK ESREPQG L RPPVDHGLARLV
Sbjct: 1 MASATAAAARRGLGRALPLLWRGYQTERGVYGYRPRKPESREPQGALERPPVDHGLARLV 60
Query: 313 TVYCEHGHKAAKINPLFTGQALQENVPEIQALVQTLQGPFNTAGLLNMGKEEASLEEVVA 492
TVYCEHGHKAAKINPLFTGQAL ENVPEIQALVQTLQGPF+TAGLLNMGKEEASLEEV+
Sbjct: 61 TVYCEHGHKAAKINPLFTGQALLENVPEIQALVQTLQGPFHTAGLLNMGKEEASLEEVLV 120
Query: 493 YLNQIYCGQISIETSQLQSQEEKDWFAKRFEELKKEAFTTEERKHLSKLMLESQAFDHFL 672
YLNQIYCGQISIETSQLQSQ+EKDWFAKRFEEL+KE FTTEERKHLSKLMLESQ FDHFL
Sbjct: 121 YLNQIYCGQISIETSQLQSQDEKDWFAKRFEELQKETFTTEERKHLSKLMLESQEFDHFL 180
Query: 673 ATKFATVKRYGGEGAESMMGFFYELLRTAAYSGVTDVIIGMPHRGRLNLLTGLLQFPPEL 852
ATKF+TVKRYGGEGAESMMGFF+ELL+ +AYSG+TDVIIGMPHRGRLNLLTGLLQFPPEL
Sbjct: 181 ATKFSTVKRYGGEGAESMMGFFHELLKMSAYSGITDVIIGMPHRGRLNLLTGLLQFPPEL 240
Query: 853 MFRKMRGLSEFPE 891
MFRKMRGLSEFPE
Sbjct: 241 MFRKMRGLSEFPE 253
Score = 60.1 bits (144), Expect(2) = e-141
Identities = 28/33 (84%), Positives = 28/33 (84%)
Frame = +3
Query: 891 NVSHVGDVLSHLTSSVDLXFGAHHPPHVTMLPN 989
N S GDVLSHLTSSVDL FGAHHP HVTMLPN
Sbjct: 254 NFSATGDVLSHLTSSVDLYFGAHHPLHVTMLPN 286
>ref|NP_060715.2| 2-oxoglutarate dehydrogenase-like, mitochondrial isoform a [Homo
sapiens].
Length = 1010
Score = 91.3 bits (225), Expect = 1e-18
Identities = 59/205 (28%), Positives = 100/205 (48%), Gaps = 15/205 (7%)
Frame = +1
Query: 289 DH-GLARLVTVYCEHGHKAAKINPLFTGQA-LQENVP-------------EIQALVQTLQ 423
DH + L+ Y GH A+++PL A L VP ++Q +
Sbjct: 113 DHLAVQSLIRAYQIRGHHVAQLDPLGILDADLDSFVPSDLITTIDKLAFYDLQEADLDKE 172
Query: 424 GPFNTAGLLNMGKEEASLEEVVAYLNQIYCGQISIETSQLQSQEEKDWFAKRFEELKKEA 603
T + + SL E++ L YC I +E + E+ W ++FE
Sbjct: 173 FQLPTTTFIGGSENTLSLREIIRRLENTYCQHIGLEFMFINDVEQCQWIRQKFETPGVMQ 232
Query: 604 FTTEERKHLSKLMLESQAFDHFLATKFATVKRYGGEGAESMMGFFYELLRTAAYSGVTDV 783
F++EE++ L ++ S F+ FLA K+++ KR+G EG E M+ ++ ++ G+ +V
Sbjct: 233 FSSEEKRTLLARLVRSMRFEDFLARKWSSEKRFGLEGCEVMIPALKTIIDKSSEMGIENV 292
Query: 784 IIGMPHRGRLNLLTGLLQFPPELMF 858
I+GMPHRGRLN+L +++ E +F
Sbjct: 293 ILGMPHRGRLNVLANVIRKDLEQIF 317
>ref|NP_001158508.1| 2-oxoglutarate dehydrogenase, mitochondrial isoform 3 precursor
[Homo sapiens].
Length = 1019
Score = 89.4 bits (220), Expect = 5e-18
Identities = 61/212 (28%), Positives = 105/212 (49%), Gaps = 11/212 (5%)
Frame = +1
Query: 256 EPQGGLARPPVDH-GLARLVTVYCEHGHKAAKINPLFTGQALQENVP-EIQALV------ 411
E Q + + DH + L+ Y GH AK++PL ++ P + + V
Sbjct: 115 EAQPNVDKLVEDHLAVQSLIRAYQVRGHHIAKLDPLGISCVNFDDAPVTVSSNVGFYGLD 174
Query: 412 -QTLQGPFNTAGLLNMGKEEASL--EEVVAYLNQIYCGQISIETSQLQSQEEKDWFAKRF 582
L F+ +G +E++L E++ L YC I +E + E+ W ++F
Sbjct: 175 ESDLDKVFHLPTTTFIGGQESALPLREIIRRLEMAYCQHIGVEFMFINDLEQCQWIRQKF 234
Query: 583 EELKKEAFTTEERKHLSKLMLESQAFDHFLATKFATVKRYGGEGAESMMGFFYELLRTAA 762
E FT EE++ L ++ S F+ FL K+++ KR+G EG E ++ ++ ++
Sbjct: 235 ETPGIMQFTNEEKRTLLARLVRSTRFEEFLQRKWSSEKRFGLEGCEVLIPALKTIIDKSS 294
Query: 763 YSGVTDVIIGMPHRGRLNLLTGLLQFPPELMF 858
+GV VI+GMPHRGRLN+L +++ E +F
Sbjct: 295 ENGVDYVIMGMPHRGRLNVLANVIRKELEQIF 326
>ref|NP_001137468.1| 2-oxoglutarate dehydrogenase-like, mitochondrial isoform b [Homo
sapiens].
Length = 953
Score = 88.6 bits (218), Expect = 8e-18
Identities = 45/141 (31%), Positives = 78/141 (55%)
Frame = +1
Query: 436 TAGLLNMGKEEASLEEVVAYLNQIYCGQISIETSQLQSQEEKDWFAKRFEELKKEAFTTE 615
T + + SL E++ L YC I +E + E+ W ++FE F++E
Sbjct: 120 TTTFIGGSENTLSLREIIRRLENTYCQHIGLEFMFINDVEQCQWIRQKFETPGVMQFSSE 179
Query: 616 ERKHLSKLMLESQAFDHFLATKFATVKRYGGEGAESMMGFFYELLRTAAYSGVTDVIIGM 795
E++ L ++ S F+ FLA K+++ KR+G EG E M+ ++ ++ G+ +VI+GM
Sbjct: 180 EKRTLLARLVRSMRFEDFLARKWSSEKRFGLEGCEVMIPALKTIIDKSSEMGIENVILGM 239
Query: 796 PHRGRLNLLTGLLQFPPELMF 858
PHRGRLN+L +++ E +F
Sbjct: 240 PHRGRLNVLANVIRKDLEQIF 260
>ref|NP_002532.2| 2-oxoglutarate dehydrogenase, mitochondrial isoform 1 precursor
[Homo sapiens].
Length = 1023
Score = 87.4 bits (215), Expect = 2e-17
Identities = 63/216 (29%), Positives = 107/216 (49%), Gaps = 15/216 (6%)
Frame = +1
Query: 256 EPQGGLARPPVDH-GLARLVTVYCEHGHKAAKINPLFTGQA-LQENVPE----------I 399
E Q + + DH + L+ Y GH A+++PL A L +VP
Sbjct: 115 EAQPNVDKLVEDHLAVQSLIRAYQIRGHHVAQLDPLGILDADLDSSVPADIISSTDKLGF 174
Query: 400 QALVQT-LQGPFNTAGLLNMGKEEASL--EEVVAYLNQIYCGQISIETSQLQSQEEKDWF 570
L ++ L F+ +G +E++L E++ L YC I +E + E+ W
Sbjct: 175 YGLDESDLDKVFHLPTTTFIGGQESALPLREIIRRLEMAYCQHIGVEFMFINDLEQCQWI 234
Query: 571 AKRFEELKKEAFTTEERKHLSKLMLESQAFDHFLATKFATVKRYGGEGAESMMGFFYELL 750
++FE FT EE++ L ++ S F+ FL K+++ KR+G EG E ++ ++
Sbjct: 235 RQKFETPGIMQFTNEEKRTLLARLVRSTRFEEFLQRKWSSEKRFGLEGCEVLIPALKTII 294
Query: 751 RTAAYSGVTDVIIGMPHRGRLNLLTGLLQFPPELMF 858
++ +GV VI+GMPHRGRLN+L +++ E +F
Sbjct: 295 DKSSENGVDYVIMGMPHRGRLNVLANVIRKELEQIF 330
>ref|NP_001003941.1| 2-oxoglutarate dehydrogenase, mitochondrial isoform 2 precursor
[Homo sapiens].
Length = 427
Score = 87.4 bits (215), Expect = 2e-17
Identities = 63/216 (29%), Positives = 107/216 (49%), Gaps = 15/216 (6%)
Frame = +1
Query: 256 EPQGGLARPPVDH-GLARLVTVYCEHGHKAAKINPLFTGQA-LQENVPE----------I 399
E Q + + DH + L+ Y GH A+++PL A L +VP
Sbjct: 115 EAQPNVDKLVEDHLAVQSLIRAYQIRGHHVAQLDPLGILDADLDSSVPADIISSTDKLGF 174
Query: 400 QALVQT-LQGPFNTAGLLNMGKEEASL--EEVVAYLNQIYCGQISIETSQLQSQEEKDWF 570
L ++ L F+ +G +E++L E++ L YC I +E + E+ W
Sbjct: 175 YGLDESDLDKVFHLPTTTFIGGQESALPLREIIRRLEMAYCQHIGVEFMFINDLEQCQWI 234
Query: 571 AKRFEELKKEAFTTEERKHLSKLMLESQAFDHFLATKFATVKRYGGEGAESMMGFFYELL 750
++FE FT EE++ L ++ S F+ FL K+++ KR+G EG E ++ ++
Sbjct: 235 RQKFETPGIMQFTNEEKRTLLARLVRSTRFEEFLQRKWSSEKRFGLEGCEVLIPALKTII 294
Query: 751 RTAAYSGVTDVIIGMPHRGRLNLLTGLLQFPPELMF 858
++ +GV VI+GMPHRGRLN+L +++ E +F
Sbjct: 295 DKSSENGVDYVIMGMPHRGRLNVLANVIRKELEQIF 330
>ref|NP_001137469.1| 2-oxoglutarate dehydrogenase-like, mitochondrial isoform c [Homo
sapiens].
Length = 801
Score = 73.6 bits (179), Expect = 3e-13
Identities = 36/102 (35%), Positives = 63/102 (61%)
Frame = +1
Query: 553 EEKDWFAKRFEELKKEAFTTEERKHLSKLMLESQAFDHFLATKFATVKRYGGEGAESMMG 732
E+ W ++FE F++EE++ L ++ S F+ FLA K+++ KR+G EG E M+
Sbjct: 7 EQCQWIRQKFETPGVMQFSSEEKRTLLARLVRSMRFEDFLARKWSSEKRFGLEGCEVMIP 66
Query: 733 FFYELLRTAAYSGVTDVIIGMPHRGRLNLLTGLLQFPPELMF 858
++ ++ G+ +VI+GMPHRGRLN+L +++ E +F
Sbjct: 67 ALKTIIDKSSEMGIENVILGMPHRGRLNVLANVIRKDLEQIF 108
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 39,505,570
Number of extensions: 1067714
Number of successful extensions: 3996
Number of sequences better than 1.0e-05: 7
Number of HSP's gapped: 3990
Number of HSP's successfully gapped: 8
Length of query: 330
Length of database: 18,297,164
Length adjustment: 103
Effective length of query: 227
Effective length of database: 14,901,872
Effective search space: 3382724944
Effective search space used: 3382724944
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003953
(991 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001074600.1| probable 2-oxoglutarate dehydrogenase E1 com... 424 e-130
Alignment gi|XP_003086261.1| PREDICTED: probable 2-oxoglutarate dehydroge... 424 e-130
Alignment gi|NP_001074599.1| 2-oxoglutarate dehydrogenase-like, mitochond... 88 1e-17
Alignment gi|NP_035086.2| 2-oxoglutarate dehydrogenase, mitochondrial pre... 87 3e-17
>ref|NP_001074600.1| probable 2-oxoglutarate dehydrogenase E1 component DHKTD1,
mitochondrial precursor [Mus musculus].
Length = 921
Score = 424 bits (1090), Expect(2) = e-130
Identities = 210/255 (82%), Positives = 228/255 (89%)
Frame = +1
Query: 142 ATVAAARLGLSRAPSLLRRGYQTERGVYGYRPRKRESREPQGGLARPPVDHGLARLVTVY 321
ATVAAA L RA LLRRGYQTERGVYGYRPRK +S EP+G ARP VDHGLARLVTVY
Sbjct: 5 ATVAAAGRALRRAVLLLRRGYQTERGVYGYRPRKAKSGEPRGDRARPSVDHGLARLVTVY 64
Query: 322 CEHGHKAAKINPLFTGQALQENVPEIQALVQTLQGPFNTAGLLNMGKEEASLEEVVAYLN 501
CEHGHKAA+INPLF GQAL + VPEIQALV+TLQGPF T GLLN+GKE ASLEEV+AYLN
Sbjct: 65 CEHGHKAAQINPLFPGQALLDTVPEIQALVRTLQGPFTTTGLLNLGKEAASLEEVLAYLN 124
Query: 502 QIYCGQISIETSQLQSQEEKDWFAKRFEELKKEAFTTEERKHLSKLMLESQAFDHFLATK 681
IYCG ISIET+QLQSQEE+DWFA+RFEELKKE FTTEERK+LSKL+LESQ FDHFLATK
Sbjct: 125 HIYCGPISIETAQLQSQEERDWFARRFEELKKETFTTEERKYLSKLLLESQEFDHFLATK 184
Query: 682 FATVKRYGGEGAESMMGFFYELLRTAAYSGVTDVIIGMPHRGRLNLLTGLLQFPPELMFR 861
FATVKRYGGEGAESMMGFF+ELL+ +AY G+TD+IIGMPHRGRLNLLTGLLQ PPELMFR
Sbjct: 185 FATVKRYGGEGAESMMGFFHELLKLSAYGGITDIIIGMPHRGRLNLLTGLLQLPPELMFR 244
Query: 862 KMRGLSEFPETSPTL 906
KMRGLSEFPE T+
Sbjct: 245 KMRGLSEFPENVATI 259
Score = 58.9 bits (141), Expect(2) = e-130
Identities = 27/33 (81%), Positives = 29/33 (87%)
Frame = +3
Query: 891 NVSHVGDVLSHLTSSVDLXFGAHHPPHVTMLPN 989
NV+ +GDVLSHLTSSVDL FGAH P HVTMLPN
Sbjct: 255 NVATIGDVLSHLTSSVDLDFGAHQPLHVTMLPN 287
>ref|XP_003086261.1| PREDICTED: probable 2-oxoglutarate dehydrogenase E1 component
DHKTD1, mitochondrial-like [Mus musculus].
Length = 532
Score = 424 bits (1090), Expect(2) = e-130
Identities = 210/255 (82%), Positives = 228/255 (89%)
Frame = +1
Query: 142 ATVAAARLGLSRAPSLLRRGYQTERGVYGYRPRKRESREPQGGLARPPVDHGLARLVTVY 321
ATVAAA L RA LLRRGYQTERGVYGYRPRK +S EP+G ARP VDHGLARLVTVY
Sbjct: 5 ATVAAAGRALRRAVLLLRRGYQTERGVYGYRPRKAKSGEPRGDRARPSVDHGLARLVTVY 64
Query: 322 CEHGHKAAKINPLFTGQALQENVPEIQALVQTLQGPFNTAGLLNMGKEEASLEEVVAYLN 501
CEHGHKAA+INPLF GQAL + VPEIQALV+TLQGPF T GLLN+GKE ASLEEV+AYLN
Sbjct: 65 CEHGHKAAQINPLFPGQALLDTVPEIQALVRTLQGPFTTTGLLNLGKEAASLEEVLAYLN 124
Query: 502 QIYCGQISIETSQLQSQEEKDWFAKRFEELKKEAFTTEERKHLSKLMLESQAFDHFLATK 681
IYCG ISIET+QLQSQEE+DWFA+RFEELKKE FTTEERK+LSKL+LESQ FDHFLATK
Sbjct: 125 HIYCGPISIETAQLQSQEERDWFARRFEELKKETFTTEERKYLSKLLLESQEFDHFLATK 184
Query: 682 FATVKRYGGEGAESMMGFFYELLRTAAYSGVTDVIIGMPHRGRLNLLTGLLQFPPELMFR 861
FATVKRYGGEGAESMMGFF+ELL+ +AY G+TD+IIGMPHRGRLNLLTGLLQ PPELMFR
Sbjct: 185 FATVKRYGGEGAESMMGFFHELLKLSAYGGITDIIIGMPHRGRLNLLTGLLQLPPELMFR 244
Query: 862 KMRGLSEFPETSPTL 906
KMRGLSEFPE T+
Sbjct: 245 KMRGLSEFPENVATI 259
Score = 58.9 bits (141), Expect(2) = e-130
Identities = 27/33 (81%), Positives = 29/33 (87%)
Frame = +3
Query: 891 NVSHVGDVLSHLTSSVDLXFGAHHPPHVTMLPN 989
NV+ +GDVLSHLTSSVDL FGAH P HVTMLPN
Sbjct: 255 NVATIGDVLSHLTSSVDLDFGAHQPLHVTMLPN 287
>ref|NP_001074599.1| 2-oxoglutarate dehydrogenase-like, mitochondrial [Mus musculus].
Length = 1029
Score = 87.8 bits (216), Expect = 1e-17
Identities = 44/129 (34%), Positives = 74/129 (57%)
Frame = +1
Query: 472 SLEEVVAYLNQIYCGQISIETSQLQSQEEKDWFAKRFEELKKEAFTTEERKHLSKLMLES 651
SL E++ L YC I +E + E+ W ++FE F+ EE++ L ++ S
Sbjct: 208 SLREIIRRLESTYCQHIGLEFMFINDVEQCQWIRQKFETPGVMQFSVEEKRTLLARLVRS 267
Query: 652 QAFDHFLATKFATVKRYGGEGAESMMGFFYELLRTAAYSGVTDVIIGMPHRGRLNLLTGL 831
F+ FLA K+++ KR+G EG E M+ ++ ++ G+ +VI+GMPHRGRLN+L +
Sbjct: 268 MRFEDFLARKWSSEKRFGLEGCEVMIPALKTIIDKSSEMGIENVILGMPHRGRLNVLANV 327
Query: 832 LQFPPELMF 858
++ E +F
Sbjct: 328 IRKDLEQIF 336
>ref|NP_035086.2| 2-oxoglutarate dehydrogenase, mitochondrial precursor [Mus
musculus].
Length = 1023
Score = 86.7 bits (213), Expect = 3e-17
Identities = 63/216 (29%), Positives = 106/216 (49%), Gaps = 15/216 (6%)
Frame = +1
Query: 256 EPQGGLARPPVDH-GLARLVTVYCEHGHKAAKINPLFTGQA-LQENVPE----------I 399
E Q + + DH + L+ Y GH A+++PL A L +VP
Sbjct: 115 EAQPNVDKLVEDHLAVQSLIRAYQIRGHHVAQLDPLGILDADLDSSVPADIISSTDKLGF 174
Query: 400 QALVQT-LQGPFNTAGLLNMGKEEASL--EEVVAYLNQIYCGQISIETSQLQSQEEKDWF 570
L ++ L F+ +G +E +L E++ L YC I +E + E+ W
Sbjct: 175 YGLHESDLDKVFHLPTTTFIGGQEPALPLREIIRRLEMAYCQHIGVEFMFINDLEQCQWI 234
Query: 571 AKRFEELKKEAFTTEERKHLSKLMLESQAFDHFLATKFATVKRYGGEGAESMMGFFYELL 750
++FE FT EE++ L ++ S F+ FL K+++ KR+G EG E ++ ++
Sbjct: 235 RQKFETPGIMQFTNEEKRTLLARLVRSTRFEEFLQRKWSSEKRFGLEGCEVLIPALKTII 294
Query: 751 RTAAYSGVTDVIIGMPHRGRLNLLTGLLQFPPELMF 858
++ +GV VI+GMPHRGRLN+L +++ E +F
Sbjct: 295 DMSSANGVDYVIMGMPHRGRLNVLANVIRKELEQIF 330
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 33,326,797
Number of extensions: 891688
Number of successful extensions: 3150
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 3148
Number of HSP's successfully gapped: 6
Length of query: 330
Length of database: 15,617,559
Length adjustment: 102
Effective length of query: 228
Effective length of database: 12,553,887
Effective search space: 2862286236
Effective search space used: 2862286236
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003953
(991 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_003360703.1| PREDICTED: probable 2-oxoglutarate dehydroge... 407 e-126
Alignment gi|XP_003133157.2| PREDICTED: LOW QUALITY PROTEIN: 2-oxoglutara... 92 6e-19
>ref|XP_003360703.1| PREDICTED: probable 2-oxoglutarate dehydrogenase E1 component
DHKTD1, mitochondrial-like, partial [Sus scrofa].
Length = 398
Score = 407 bits (1045), Expect(2) = e-126
Identities = 211/226 (93%), Positives = 213/226 (94%), Gaps = 1/226 (0%)
Frame = +1
Query: 217 GVYGYRPRKRESREPQGGLARPP-VDHGLARLVTVYCEHGHKAAKINPLFTGQALQENVP 393
G G PR R +PQ L PP +DHGLARLVTVYCEHGHKAAKINPLFTGQALQENVP
Sbjct: 78 GQRGRPPRHRA--QPQ--LWPPPAMDHGLARLVTVYCEHGHKAAKINPLFTGQALQENVP 133
Query: 394 EIQALVQTLQGPFNTAGLLNMGKEEASLEEVVAYLNQIYCGQISIETSQLQSQEEKDWFA 573
EIQALVQTLQGPFNTAGLLNMGKEEASLEEVVAYLNQIYCGQISIETSQLQSQEEKDWFA
Sbjct: 134 EIQALVQTLQGPFNTAGLLNMGKEEASLEEVVAYLNQIYCGQISIETSQLQSQEEKDWFA 193
Query: 574 KRFEELKKEAFTTEERKHLSKLMLESQAFDHFLATKFATVKRYGGEGAESMMGFFYELLR 753
KRFEELKKEAFTTEERKHLSKLMLESQAFDHFLATKFATVKRYGGEGAESMMGFFYELLR
Sbjct: 194 KRFEELKKEAFTTEERKHLSKLMLESQAFDHFLATKFATVKRYGGEGAESMMGFFYELLR 253
Query: 754 TAAYSGVTDVIIGMPHRGRLNLLTGLLQFPPELMFRKMRGLSEFPE 891
TAAYSGVTDVIIGMPHRGRLNLLTGLLQFPPELMFRKMRGLSEFPE
Sbjct: 254 TAAYSGVTDVIIGMPHRGRLNLLTGLLQFPPELMFRKMRGLSEFPE 299
Score = 64.7 bits (156), Expect(2) = e-126
Identities = 30/33 (90%), Positives = 31/33 (93%)
Frame = +3
Query: 891 NVSHVGDVLSHLTSSVDLXFGAHHPPHVTMLPN 989
NVS+VGDVLSHLTSSVDL FGAHHP HVTMLPN
Sbjct: 300 NVSNVGDVLSHLTSSVDLDFGAHHPLHVTMLPN 332
>ref|XP_003133157.2| PREDICTED: LOW QUALITY PROTEIN: 2-oxoglutarate dehydrogenase-like,
mitochondrial-like [Sus scrofa].
Length = 1010
Score = 91.7 bits (226), Expect = 6e-19
Identities = 61/223 (27%), Positives = 106/223 (47%), Gaps = 15/223 (6%)
Frame = +1
Query: 235 PRKRESREPQGGLARPPVDH-GLARLVTVYCEHGHKAAKINPLFTGQA-LQENVP----- 393
P R + + ++ DH + L+ Y GH A+++PL A L VP
Sbjct: 95 PESRPAASGRTKTSKLVEDHLAVQSLIRAYQIRGHHVAQLDPLGILDADLDSFVPSDLIT 154
Query: 394 --------EIQALVQTLQGPFNTAGLLNMGKEEASLEEVVAYLNQIYCGQISIETSQLQS 549
++Q + T + + SL E++ L YC I +E +
Sbjct: 155 TIDKLAFYDLQEADLDKEFQLPTTTFIGGSEHTLSLREIIRRLESTYCQHIGLEFMFIND 214
Query: 550 QEEKDWFAKRFEELKKEAFTTEERKHLSKLMLESQAFDHFLATKFATVKRYGGEGAESMM 729
E+ W ++FE F++EE++ L ++ S F+ FLA K+++ KR+G EG E M+
Sbjct: 215 VEQCQWIRQKFETPGVMQFSSEEKRTLLARLVRSMRFEDFLARKWSSEKRFGLEGCEVMI 274
Query: 730 GFFYELLRTAAYSGVTDVIIGMPHRGRLNLLTGLLQFPPELMF 858
++ ++ G+ +VI+GMPHRGRLN+L +++ E +F
Sbjct: 275 PALKTIIDKSSEMGIENVILGMPHRGRLNVLANVIRKDLEQIF 317
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 24,921,605
Number of extensions: 682397
Number of successful extensions: 2518
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 2516
Number of HSP's successfully gapped: 3
Length of query: 330
Length of database: 11,343,932
Length adjustment: 99
Effective length of query: 231
Effective length of database: 8,879,129
Effective search space: 2051078799
Effective search space used: 2051078799
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003953
(991 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|GL892550.1| Sus scrofa unplaced genomic scaffold chrU_scaffol... 426 e-116
gb|GL896301.1| Sus scrofa unplaced genomic scaffold chrU_scaffol... 404 e-110
>gb|GL892550.1| Sus scrofa unplaced genomic scaffold chrU_scaffold1403
Length = 20008
Score = 426 bits (215), Expect = e-116
Identities = 215/215 (100%)
Strand = Plus / Plus
Query: 441 aggcttattgaacatggggaaggaggaggcctctctcgaggaagtcgtggcctatctcaa 500
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14109 aggcttattgaacatggggaaggaggaggcctctctcgaggaagtcgtggcctatctcaa 14168
Query: 501 ccagatctactgtgggcagatttccattgaaacgtcccagcttcagagccaggaggagaa 560
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14169 ccagatctactgtgggcagatttccattgaaacgtcccagcttcagagccaggaggagaa 14228
Query: 561 ggactggtttgccaagaggtttgaggaactgaaaaaggaggcatttaccacagaagagcg 620
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14229 ggactggtttgccaagaggtttgaggaactgaaaaaggaggcatttaccacagaagagcg 14288
Query: 621 aaaacatttgtcgaaactcatgctagaatctcagg 655
|||||||||||||||||||||||||||||||||||
Sbjct: 14289 aaaacatttgtcgaaactcatgctagaatctcagg 14323
Score = 391 bits (197), Expect = e-106
Identities = 197/197 (100%)
Strand = Plus / Plus
Query: 653 aggcctttgaccactttttggccaccaagtttgccacggtgaagcgatacggaggcgaag 712
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15702 aggcctttgaccactttttggccaccaagtttgccacggtgaagcgatacggaggcgaag 15761
Query: 713 gtgctgaaagcatgatgggctttttctacgagctgctgagaacggctgcctacagcgggg 772
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15762 gtgctgaaagcatgatgggctttttctacgagctgctgagaacggctgcctacagcgggg 15821
Query: 773 tcaccgatgtcattattgggatgccccatagagggaggctgaacctactgacaggccttc 832
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15822 tcaccgatgtcattattgggatgccccatagagggaggctgaacctactgacaggccttc 15881
Query: 833 tgcagttccctccagag 849
|||||||||||||||||
Sbjct: 15882 tgcagttccctccagag 15898
Score = 315 bits (159), Expect = 3e-83
Identities = 159/159 (100%)
Strand = Plus / Plus
Query: 285 agtggatcatggccttgccaggttggtaactgtatattgcgagcacggtcataaagcggc 344
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11975 agtggatcatggccttgccaggttggtaactgtatattgcgagcacggtcataaagcggc 12034
Query: 345 caaaatcaaccccctcttcactggccaagcgctgcaggagaatgtgcctgaaatccaagc 404
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12035 caaaatcaaccccctcttcactggccaagcgctgcaggagaatgtgcctgaaatccaagc 12094
Query: 405 cctcgtgcagactttgcagggacccttcaatactgcagg 443
|||||||||||||||||||||||||||||||||||||||
Sbjct: 12095 cctcgtgcagactttgcagggacccttcaatactgcagg 12133
Score = 242 bits (122), Expect = 3e-61
Identities = 140/145 (96%), Gaps = 1/145 (0%)
Strand = Plus / Plus
Query: 848 agttgatgttccgtaaaatgcgaggcttaagtgaatttccggaaa-cgtctcccacgttg 906
||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||
Sbjct: 16907 agttgatgttccgtaaaatgcgaggcttaagtgaatttccggaaaacgtctccaacgttg 16966
Query: 907 gcgatgtcctgtctcacctgacctcctcggttgacctgnacttcggggcacaccatcccc 966
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 16967 gcgatgtcctgtctcacctgacctcctcggttgacctggacttcggggcacaccatcccc 17026
Query: 967 ctcacgtgaccatgctccctaaccc 991
|||||||||||||||||||||||
Sbjct: 17027 tccacgtgaccatgctccctaaccc 17051
>gb|GL896301.1| Sus scrofa unplaced genomic scaffold chrU_scaffold655
Length = 3795
Score = 404 bits (204), Expect = e-110
Identities = 207/208 (99%)
Strand = Plus / Minus
Query: 2 tcctcttgcctcccgctctccctagaggtggatacccagtagtccagcggcgtaggagcc 61
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1304 tcctcttgcctcccgctctccctagaggtggatacccagtagtccagcggcgtaggagcc 1245
Query: 62 accttccttcctggtggctgcaacccctcgatctcccgccgaagtctccaggcctgagag 121
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 1244 accttccttcctggtggctgtaacccctcgatctcccgccgaagtctccaggcctgagag 1185
Query: 122 cctggccgaacatggccttggctactgtggcagcagcaagactgggcctcagccgggctc 181
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1184 cctggccgaacatggccttggctactgtggcagcagcaagactgggcctcagccgggctc 1125
Query: 182 cttcgctccttcggcgtggctaccagac 209
||||||||||||||||||||||||||||
Sbjct: 1124 cttcgctccttcggcgtggctaccagac 1097
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 23,721,939
Number of extensions: 122
Number of successful extensions: 122
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 121
Number of HSP's successfully gapped: 5
Length of query: 991
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 970
Effective length of database: 2,808,413,156
Effective search space: 2724160761320
Effective search space used: 2724160761320
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 29 (58.0 bits)