Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003970
(934 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001095544.1| sulfhydryl oxidase 1 [Bos taurus]. 431 e-121
Alignment gi|XP_002691662.1| PREDICTED: quiescin Q6 sulfhydryl oxidase 2 ... 221 9e-58
Alignment gi|XP_002700926.1| PREDICTED: quiescin Q6 sulfhydryl oxidase 2 ... 156 2e-38
Alignment gi|NP_001193274.1| protein disulfide-isomerase A6 [Bos taurus]. 68 1e-11
Alignment gi|XP_002691152.1| PREDICTED: PDIA6 protein-like [Bos taurus]. 65 7e-11
Alignment gi|XP_589324.4| PREDICTED: PDIA6 protein-like [Bos taurus]. 65 7e-11
Alignment gi|NP_001193661.1| thioredoxin domain-containing protein 5 [Bos... 64 2e-10
Alignment gi|NP_776758.2| protein disulfide-isomerase A3 precursor [Bos t... 62 7e-10
Alignment gi|NP_001039344.1| protein disulfide-isomerase A4 precursor [Bo... 60 4e-09
Alignment gi|NP_776560.1| protein disulfide-isomerase precursor [Bos taur... 59 8e-09
>ref|NP_001095544.1| sulfhydryl oxidase 1 [Bos taurus].
Length = 567
Score = 431 bits (1109), Expect = e-121
Identities = 210/237 (88%), Positives = 222/237 (93%)
Frame = +2
Query: 173 RSALYSSSDPLTLLQADTVRGAVLGSRSAWAVEFFASWCGHCIAFAPTWKALANDVKDWR 352
RSALYSSSDPLTLL+ADTVR VLGS SAWAVEFFASWCGHCIAFAPTWKALANDVKDWR
Sbjct: 33 RSALYSSSDPLTLLRADTVRSTVLGSSSAWAVEFFASWCGHCIAFAPTWKALANDVKDWR 92
Query: 353 PALNLAALDCAEETNNAVCREFDIPGFPTVRFFKAFSRTGSGATLPVAGADVQTLRERLI 532
PALNLAALDCAEETN+AVCR+F+IPGFPTVRFFKAFS+TGSG TL VAGADVQTLRERLI
Sbjct: 93 PALNLAALDCAEETNSAVCRDFNIPGFPTVRFFKAFSKTGSGTTLSVAGADVQTLRERLI 152
Query: 533 DALETHSDTWPPACPPLEPARLEEITGFFARNSEEYLALIFEKEGSYLGREVALDLSQRQ 712
DALE+HSDTWPPACPPLEPARLEEITGFFARN+EEYLALIFEKEGSYLGREV LDLSQ Q
Sbjct: 153 DALESHSDTWPPACPPLEPARLEEITGFFARNNEEYLALIFEKEGSYLGREVTLDLSQHQ 212
Query: 713 GIAVRRVLNTERNVVSKFSVTDFPSCYLLFRNGSFLRVPVLMEFRSFYTAYLQKISG 883
GIAVRRVLNTER+VV++F VT+FPSCYLL RNGSF RVP L E RSFYT YL+K SG
Sbjct: 213 GIAVRRVLNTERDVVNRFGVTNFPSCYLLSRNGSFSRVPALTESRSFYTTYLRKFSG 269
>ref|XP_002691662.1| PREDICTED: quiescin Q6 sulfhydryl oxidase 2 [Bos taurus].
Length = 690
Score = 221 bits (562), Expect = 9e-58
Identities = 105/239 (43%), Positives = 154/239 (64%), Gaps = 2/239 (0%)
Frame = +2
Query: 188 SSSDPLTLLQADTVRGAVLGSRSAWAVEFFASWCGHCIAFAPTWKALANDVKDWRPALNL 367
+ D + +L + +VRGA S +AW V+F++SWCGHCI +APTW+ALA DV+DW A+ +
Sbjct: 51 AGEDAVWVLDSGSVRGATANSSAAWLVQFYSSWCGHCIGYAPTWRALAADVRDWAAAIRV 110
Query: 368 AALDCAEETNNAVCREFDIPGFPTVRFFKAFSRT-GSGATLPVAGADVQTLRERLIDALE 544
AALDCAEE N VCR +DI +PT R+FKAF++ +G ++QT+R +I+ L+
Sbjct: 111 AALDCAEEKNQEVCRAYDIHFYPTFRYFKAFTKDFTTGENFKGPDRELQTVRRTMINFLQ 170
Query: 545 THSD-TWPPACPPLEPARLEEITGFFARNSEEYLALIFEKEGSYLGREVALDLSQRQGIA 721
H+D PPACP L+P R ++ + + Y+A++ E + SY+GREV LDL + I
Sbjct: 171 NHTDGNRPPACPSLDPIRPSDVLSLIDKRGDRYVAVLLEDDSSYVGREVILDLIPYESIE 230
Query: 722 VRRVLNTERNVVSKFSVTDFPSCYLLFRNGSFLRVPVLMEFRSFYTAYLQKISGVIRKP 898
VRR L ++ + K V PSCYL++ NGS V V RSF+++YL+ + GV +KP
Sbjct: 231 VRRALGSDTAFLQKLGVPSLPSCYLIYPNGSHGPVTVGKPLRSFFSSYLRSLPGVRKKP 289
>ref|XP_002700926.1| PREDICTED: quiescin Q6 sulfhydryl oxidase 2 [Bos taurus].
Length = 637
Score = 156 bits (395), Expect = 2e-38
Identities = 78/188 (41%), Positives = 116/188 (61%), Gaps = 2/188 (1%)
Frame = +2
Query: 341 KDWRPALNLAALDCAEETNNAVCREFDIPGFPTVRFFKAFSRT-GSGATLPVAGADVQTL 517
+DW A+ +AALDCAEE N VCR +DI +PT R+FKAF++ +G ++QT+
Sbjct: 48 EDWAAAIRVAALDCAEEKNQEVCRAYDIHFYPTFRYFKAFTKDFTTGENFKGPDRELQTV 107
Query: 518 RERLIDALETHSD-TWPPACPPLEPARLEEITGFFARNSEEYLALIFEKEGSYLGREVAL 694
R +I+ L+ H+D PPACP L+P R ++ + + Y+A++ E + SY+GREV L
Sbjct: 108 RRTMINFLQNHTDGNRPPACPSLDPIRPSDVLSLIDKRGDRYVAVLLEDDSSYVGREVIL 167
Query: 695 DLSQRQGIAVRRVLNTERNVVSKFSVTDFPSCYLLFRNGSFLRVPVLMEFRSFYTAYLQK 874
DL + I VRR L ++ + K V PSCYL++ NGS V V RSF+++YL+
Sbjct: 168 DLIPYESIEVRRALGSDTAFLQKLGVPSLPSCYLIYPNGSHGPVTVGKPLRSFFSSYLRS 227
Query: 875 ISGVIRKP 898
+ GV +KP
Sbjct: 228 LPGVRKKP 235
>ref|NP_001193274.1| protein disulfide-isomerase A6 [Bos taurus].
Length = 440
Score = 67.8 bits (164), Expect = 1e-11
Identities = 40/127 (31%), Positives = 61/127 (48%), Gaps = 5/127 (3%)
Frame = +2
Query: 176 SALYSSSDPLTLLQADTVRGAVLGSRSAWAVEFFASWCGHCIAFAPTWKALANDVKDWRP 355
+ LYSSSD + L V+ S S W VEF+A WCGHC P WK A +KD
Sbjct: 18 NGLYSSSDDVIELTPSNFNREVIQSDSLWLVEFYAPWCGHCQRLTPEWKKAATALKD--- 74
Query: 356 ALNLAALDCAEETNNAVCREFDIPGFPTVRFF-----KAFSRTGSGATLPVAGADVQTLR 520
+ + A+D + + ++ ++ + GFPT++ F K G + A + LR
Sbjct: 75 VVKVGAVDA--DKHQSLGGQYGVQGFPTIKIFGSNKNKPEDYQGGRTGEAIVDAALSALR 132
Query: 521 ERLIDAL 541
+ + D L
Sbjct: 133 QLVKDRL 139
Score = 67.0 bits (162), Expect = 2e-11
Identities = 43/128 (33%), Positives = 59/128 (46%), Gaps = 1/128 (0%)
Frame = +2
Query: 188 SSSDPLTLLQADTVRGAVLGSRSAWAVEFFASWCGHCIAFAPTWKALANDVKD-WRPALN 364
SS + L D VL S W VEF+A WCGHC P W A A +VK+ + +
Sbjct: 157 SSKKDVIELTDDNFDKNVLDSEDVWMVEFYAPWCGHCKNLEPEWAAAATEVKEQTKGKVK 216
Query: 365 LAALDCAEETNNAVCREFDIPGFPTVRFFKAFSRTGSGATLPVAGADVQTLRERLIDALE 544
LAA+D N + + I GFPT++ F+ PV +T + + AL+
Sbjct: 217 LAAVDAT--VNQVLASRYGIRGFPTIKIFQK-------GESPVDYDGGRTRSDIVSRALD 267
Query: 545 THSDTWPP 568
SD PP
Sbjct: 268 LFSDNAPP 275
>ref|XP_002691152.1| PREDICTED: PDIA6 protein-like [Bos taurus].
Length = 440
Score = 65.5 bits (158), Expect = 7e-11
Identities = 33/90 (36%), Positives = 48/90 (53%)
Frame = +2
Query: 182 LYSSSDPLTLLQADTVRGAVLGSRSAWAVEFFASWCGHCIAFAPTWKALANDVKDWRPAL 361
LYSSSD + L V+ S S W VEF+A WCGHC P WK A +KD +
Sbjct: 20 LYSSSDDVIELTPSNFNREVIQSYSLWLVEFYAPWCGHCQRLTPEWKKAATALKD---VV 76
Query: 362 NLAALDCAEETNNAVCREFDIPGFPTVRFF 451
+ A+D + + ++ + + GFPT++ F
Sbjct: 77 KVGAVDA--DKHQSLGGQHGVQGFPTIKIF 104
Score = 65.1 bits (157), Expect = 8e-11
Identities = 34/90 (37%), Positives = 47/90 (52%), Gaps = 1/90 (1%)
Frame = +2
Query: 188 SSSDPLTLLQADTVRGAVLGSRSAWAVEFFASWCGHCIAFAPTWKALANDVKD-WRPALN 364
SS + L D VL S W VEF+A WCGHC P W A A +VK+ + +
Sbjct: 157 SSKKDVIELTDDNFDKNVLDSEDVWMVEFYAPWCGHCKNLEPEWAAAATEVKEQTKGKVK 216
Query: 365 LAALDCAEETNNAVCREFDIPGFPTVRFFK 454
LAA+D + N + + I GFPT++ F+
Sbjct: 217 LAAVDAS--VNQVLASRYGIRGFPTIKIFQ 244
>ref|XP_589324.4| PREDICTED: PDIA6 protein-like [Bos taurus].
Length = 440
Score = 65.5 bits (158), Expect = 7e-11
Identities = 33/90 (36%), Positives = 48/90 (53%)
Frame = +2
Query: 182 LYSSSDPLTLLQADTVRGAVLGSRSAWAVEFFASWCGHCIAFAPTWKALANDVKDWRPAL 361
LYSSSD + L V+ S S W VEF+A WCGHC P WK A +KD +
Sbjct: 20 LYSSSDDVIELTPSNFNREVIQSYSLWLVEFYAPWCGHCQRLTPEWKKAATALKD---VV 76
Query: 362 NLAALDCAEETNNAVCREFDIPGFPTVRFF 451
+ A+D + + ++ + + GFPT++ F
Sbjct: 77 KVGAVDA--DKHQSLGGQHGVQGFPTIKIF 104
Score = 65.1 bits (157), Expect = 8e-11
Identities = 34/90 (37%), Positives = 47/90 (52%), Gaps = 1/90 (1%)
Frame = +2
Query: 188 SSSDPLTLLQADTVRGAVLGSRSAWAVEFFASWCGHCIAFAPTWKALANDVKD-WRPALN 364
SS + L D VL S W VEF+A WCGHC P W A A +VK+ + +
Sbjct: 157 SSKKDVIELTDDNFDKNVLDSEDVWMVEFYAPWCGHCKNLEPEWAAAATEVKEQTKGKVK 216
Query: 365 LAALDCAEETNNAVCREFDIPGFPTVRFFK 454
LAA+D + N + + I GFPT++ F+
Sbjct: 217 LAAVDAS--VNQVLASRYGIRGFPTIKIFQ 244
>ref|NP_001193661.1| thioredoxin domain-containing protein 5 [Bos taurus].
Length = 437
Score = 63.9 bits (154), Expect = 2e-10
Identities = 55/207 (26%), Positives = 88/207 (42%), Gaps = 25/207 (12%)
Frame = +2
Query: 266 VEFFASWCGHCIAFAPTWKALANDVKDWRPALNLAALDCAEETNNAVCREFDIPGFPTVR 445
++FFA WCGHC A APTW+ LA + + + + +DC + + +C + G+PT+
Sbjct: 215 IKFFAPWCGHCKALAPTWEQLALGL-EHSETVKIGKVDCTQ--HYELCSGNQVRGYPTLL 271
Query: 446 FFKAFSRTGSGATLPVAGADVQTLRERLIDALETHSDTWPPACPPLEPARLEEITGFFAR 625
+F R G D+ +LRE + L++ P A P +P+ + A
Sbjct: 272 WF----RDGKKVDQYKGKRDLDSLREYVQSQLQS---AGPAAPEPTQPSEAPALAAEPAA 324
Query: 626 NSEEYLALIFEKEGSYLGREVAL-------------------DLSQRQGIAVRRV----- 733
+ LAL + V DLS+++ + V
Sbjct: 325 DQGTVLALTERNFDDAIAEGVTFIKFYAPWCGHCKDLAPTWEDLSKKEFPGLAEVTIAEV 384
Query: 734 -LNTERNVVSKFSVTDFPSCYLLFRNG 811
ERN+ SK+SV +P+ LLFR G
Sbjct: 385 DCTAERNLCSKYSVRGYPT-LLLFRGG 410
Score = 62.8 bits (151), Expect = 4e-10
Identities = 43/133 (32%), Positives = 61/133 (45%), Gaps = 2/133 (1%)
Frame = +2
Query: 254 SAWAVEFFASWCGHCIAFAPTWKALANDVKDWRPA-LNLAALDCAEETNNAVCREFDIPG 430
+A V FFA WCGHC PTW LA+ A + +A +DC ++ VC + G
Sbjct: 83 AAHFVMFFAPWCGHCQRLQPTWNDLADKYNSLEDAKVYVAKVDCTADSE--VCSAQGVRG 140
Query: 431 FPTVRFFKAFSRTGSGATLPVAGADVQTLRERLIDALETHSDTWPPAC-PPLEPARLEEI 607
+PT++FFK G A D Q L + ++ L T PA PP P + +
Sbjct: 141 YPTLKFFK----PGQEAVKYQGPRDFQALEKWMLQTLNEEPPTPEPAVEPPRTPELKQGL 196
Query: 608 TGFFARNSEEYLA 646
A N E ++A
Sbjct: 197 YELSAGNFELHVA 209
Score = 57.4 bits (137), Expect = 2e-08
Identities = 23/69 (33%), Positives = 39/69 (56%)
Frame = +2
Query: 266 VEFFASWCGHCIAFAPTWKALANDVKDWRPALNLAALDCAEETNNAVCREFDIPGFPTVR 445
++F+A WCGHC APTW+ L+ + +A +DC E N +C ++ + G+PT+
Sbjct: 348 IKFYAPWCGHCKDLAPTWEDLSKKEFPGLAEVTIAEVDCTAERN--LCSKYSVRGYPTLL 405
Query: 446 FFKAFSRTG 472
F+ + G
Sbjct: 406 LFRGGEKVG 414
>ref|NP_776758.2| protein disulfide-isomerase A3 precursor [Bos taurus].
Length = 505
Score = 62.0 bits (149), Expect = 7e-10
Identities = 43/145 (29%), Positives = 65/145 (44%)
Frame = +2
Query: 245 GSRSAWAVEFFASWCGHCIAFAPTWKALANDVKDWRPALNLAALDCAEETNNAVCREFDI 424
GS VEFFA WCGHC AP ++A A +K P LA +DC TN C ++ +
Sbjct: 43 GSSGLMLVEFFAPWCGHCKKLAPEYEAAATRLKGIVP---LAKVDCTANTN--TCNKYGV 97
Query: 425 PGFPTVRFFKAFSRTGSGATLPVAGADVQTLRERLIDALETHSDTWPPACPPLEPARLEE 604
G+PT++ F+ +G+ A V L+++ PA PL
Sbjct: 98 SGYPTLKIFRDGEESGAYDGPRTADGIVSHLKKQA-----------GPASVPL------- 139
Query: 605 ITGFFARNSEEYLALIFEKEGSYLG 679
++ EE+ I +K+ S +G
Sbjct: 140 ------KSEEEFEKFISDKDASVVG 158
>ref|NP_001039344.1| protein disulfide-isomerase A4 precursor [Bos taurus].
Length = 643
Score = 59.7 bits (143), Expect = 4e-09
Identities = 33/105 (31%), Positives = 53/105 (50%)
Frame = +2
Query: 266 VEFFASWCGHCIAFAPTWKALANDVKDWRPALNLAALDCAEETNNAVCREFDIPGFPTVR 445
+EF+A WCGHC FAP ++ +A +K+ P + +A +D E +A+ FD+ G+PT++
Sbjct: 83 LEFYAPWCGHCKQFAPEYEKIAATLKENDPPIPVAKIDATSE--SALASRFDVSGYPTIK 140
Query: 446 FFKAFSRTGSGATLPVAGADVQTLRERLIDALETHSDTWPPACPP 580
K G + G+ +T E + E W P PP
Sbjct: 141 ILK------KGQEVDYEGS--RTQEEIVAKVKEVSQPNWTP--PP 175
Score = 58.2 bits (139), Expect = 1e-08
Identities = 28/72 (38%), Positives = 42/72 (58%), Gaps = 3/72 (4%)
Frame = +2
Query: 266 VEFFASWCGHCIAFAPTWKALANDVKDWRPALNLAALDCAEETNNAVCREFDIPGFPTVR 445
VEF+A WCGHC AP ++ A ++ P + LA +D ET+ + + FD+ +PT++
Sbjct: 198 VEFYAPWCGHCKKLAPEYEKAAKELSKSSPPIPLAKVDAIAETD--LAKRFDVSSYPTLK 255
Query: 446 FF---KAFSRTG 472
F KAFS G
Sbjct: 256 IFRKGKAFSYNG 267
>ref|NP_776560.1| protein disulfide-isomerase precursor [Bos taurus].
Length = 510
Score = 58.5 bits (140), Expect = 8e-09
Identities = 39/120 (32%), Positives = 58/120 (48%), Gaps = 2/120 (1%)
Frame = +2
Query: 266 VEFFASWCGHCIAFAPTWKALANDVKDWRPALNLAALDCAEETNNAVCREFDIPGFPTVR 445
VEF+A WCGHC A AP + A +K + LA +D EE++ + +++ + G+PT++
Sbjct: 48 VEFYAPWCGHCKALAPEYAKAAGKLKAEGSEIRLAKVDATEESD--LAQQYGVRGYPTIK 105
Query: 446 FFKAFSRTGSGATLPVAGAD--VQTLRERLIDALETHSDTWPPACPPLEPARLEEITGFF 619
FFK AD V L++R A T SD A L + + GFF
Sbjct: 106 FFKNGDTASPKEYTAGREADDIVNWLKKRTGPAASTLSD--GAAAEALVESSEVAVIGFF 163
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 32,982,671
Number of extensions: 946627
Number of successful extensions: 4589
Number of sequences better than 1.0e-05: 16
Number of HSP's gapped: 4547
Number of HSP's successfully gapped: 23
Length of query: 311
Length of database: 17,681,374
Length adjustment: 102
Effective length of query: 209
Effective length of database: 14,306,398
Effective search space: 2990037182
Effective search space used: 2990037182
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003970
(934 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_547419.2| PREDICTED: similar to quiescin Q6 isoform a [Ca... 393 e-109
Alignment gi|XP_849400.1| PREDICTED: similar to quiescin Q6-like 1 [Canis... 216 3e-56
Alignment gi|XP_532876.2| PREDICTED: similar to Protein disulfide-isomera... 71 2e-12
Alignment gi|XP_535453.2| PREDICTED: similar to protein disulfide isomera... 64 2e-10
Alignment gi|XP_848238.1| PREDICTED: similar to Protein disulfide-isomera... 58 1e-08
Alignment gi|XP_539831.2| PREDICTED: similar to Protein disulfide-isomera... 58 1e-08
Alignment gi|XP_540488.2| PREDICTED: similar to prolyl 4-hydroxylase, bet... 58 1e-08
Alignment gi|XP_535988.2| PREDICTED: similar to DnaJ (Hsp40) homolog, sub... 52 1e-06
Alignment gi|XP_862766.1| PREDICTED: similar to DnaJ (Hsp40) homolog, sub... 52 1e-06
Alignment gi|XP_862743.1| PREDICTED: similar to DnaJ (Hsp40) homolog, sub... 52 1e-06
>ref|XP_547419.2| PREDICTED: similar to quiescin Q6 isoform a [Canis familiaris].
Length = 797
Score = 393 bits (1009), Expect = e-109
Identities = 194/233 (83%), Positives = 208/233 (89%), Gaps = 2/233 (0%)
Frame = +2
Query: 212 LQADTVRGAVLGSRSAWAVEFFASWCGHCIAFAPTWKALANDVKDWRPALNLAALDCAEE 391
L ADTVRGA+LGSRSAWAVEFFASWCGHCIAFAPTWKALA DVKDWRPALNLAALDCA+E
Sbjct: 95 LGADTVRGALLGSRSAWAVEFFASWCGHCIAFAPTWKALAQDVKDWRPALNLAALDCADE 154
Query: 392 TNNAVCREFDIPGFPTVRFFKAFSRTGSGA--TLPVAGADVQTLRERLIDALETHSDTWP 565
TNNAVCR+F+IPGFPTVRFFKAFS+ +P AGADV+TLR+RLIDALE+HSDTWP
Sbjct: 155 TNNAVCRDFNIPGFPTVRFFKAFSKNAFEGLRAIPPAGADVETLRKRLIDALESHSDTWP 214
Query: 566 PACPPLEPARLEEITGFFARNSEEYLALIFEKEGSYLGREVALDLSQRQGIAVRRVLNTE 745
PACPPLEPARLEEI GFFARN +EYLALIFEKEGSYLGREVALDLSQ QGIAVRRVLNTE
Sbjct: 215 PACPPLEPARLEEIDGFFARNDDEYLALIFEKEGSYLGREVALDLSQHQGIAVRRVLNTE 274
Query: 746 RNVVSKFSVTDFPSCYLLFRNGSFLRVPVLMEFRSFYTAYLQKISGVIRKPVP 904
+VVSKF VTDFPSCYLLFRNGS RV VL E R FYTAYL+K S +IR+ VP
Sbjct: 275 GDVVSKFGVTDFPSCYLLFRNGSTSRVHVLQESRPFYTAYLKKFSKLIREAVP 327
>ref|XP_849400.1| PREDICTED: similar to quiescin Q6-like 1 [Canis familiaris].
Length = 749
Score = 216 bits (549), Expect = 3e-56
Identities = 102/238 (42%), Positives = 153/238 (64%), Gaps = 2/238 (0%)
Frame = +2
Query: 188 SSSDPLTLLQADTVRGAVLGSRSAWAVEFFASWCGHCIAFAPTWKALANDVKDWRPALNL 367
+ D + +L + +VRGA S +AW V+F++SWCGHCI +APTW+ALA DV+DW A+ +
Sbjct: 109 AGEDAVWVLDSGSVRGATANSSAAWLVQFYSSWCGHCIGYAPTWRALARDVRDWAAAIRV 168
Query: 368 AALDCAEETNNAVCREFDIPGFPTVRFFKAFSRT-GSGATLPVAGADVQTLRERLIDALE 544
AALDCAEE N+ VCR +DI +P+ R+FKAF++ +G ++QT+R +ID L+
Sbjct: 169 AALDCAEEENHEVCRAYDIHFYPSFRYFKAFTKDFTTGENFKGPDRELQTVRRTMIDFLQ 228
Query: 545 THSDT-WPPACPPLEPARLEEITGFFARNSEEYLALIFEKEGSYLGREVALDLSQRQGIA 721
H+DT PPACPPL P ++ Y+A++FE SY+GREV LDL + I
Sbjct: 229 NHTDTDRPPACPPLGPIPPSDVLSLLDNRDGRYVAILFENNSSYVGREVILDLLPYENIV 288
Query: 722 VRRVLNTERNVVSKFSVTDFPSCYLLFRNGSFLRVPVLMEFRSFYTAYLQKISGVIRK 895
V+RVL+ + + K V+ PSCYL++ NG+ + + RSF+++YL+ + V +K
Sbjct: 289 VKRVLDADEAFLEKLGVSSLPSCYLIYPNGTRGLMNIGKPLRSFFSSYLKSLPDVRKK 346
>ref|XP_532876.2| PREDICTED: similar to Protein disulfide-isomerase A6 precursor
(Thioredoxin domain containing protein 7) [Canis
familiaris].
Length = 440
Score = 70.9 bits (172), Expect = 2e-12
Identities = 41/127 (32%), Positives = 64/127 (50%), Gaps = 9/127 (7%)
Frame = +2
Query: 176 SALYSSSDPLTLLQADTVRGAVLGSRSAWAVEFFASWCGHCIAFAPTWKALANDVKDWRP 355
+ LYSSSD + L V+ S + W VEF+A WCGHC P WK +A +KD
Sbjct: 18 NGLYSSSDDVIELTPSNFNREVIQSDNLWLVEFYAPWCGHCQRLTPEWKKVATALKD--- 74
Query: 356 ALNLAALDCAEETNNAVCREFDIPGFPTVRFFKA---------FSRTGSGATLPVAGADV 508
+ + A+D + + ++ ++ + GFPT++ F + SRTG GA
Sbjct: 75 VVKVGAVDA--DKHQSLGGQYGVQGFPTIKIFGSNKNRPEDYQGSRTGEAIVDAALGALR 132
Query: 509 QTLRERL 529
Q +++RL
Sbjct: 133 QLVKDRL 139
Score = 63.2 bits (152), Expect = 3e-10
Identities = 39/120 (32%), Positives = 57/120 (47%), Gaps = 1/120 (0%)
Frame = +2
Query: 212 LQADTVRGAVLGSRSAWAVEFFASWCGHCIAFAPTWKALANDVKD-WRPALNLAALDCAE 388
L D+ VL S W VEF+A WCGHC P W A A +VK+ + + LAA+D
Sbjct: 165 LTDDSFDKNVLDSDDVWMVEFYAPWCGHCKNLEPEWAAAATEVKEQTKGKVKLAAVDAT- 223
Query: 389 ETNNAVCREFDIPGFPTVRFFKAFSRTGSGATLPVAGADVQTLRERLIDALETHSDTWPP 568
N + + I GFPT++ F+ P+ +T + + AL+ S+ PP
Sbjct: 224 -VNQLLASRYGIRGFPTIKIFQK-------GESPMEYEGGRTRSDIVSRALDLFSENAPP 275
>ref|XP_535453.2| PREDICTED: similar to protein disulfide isomerase-associated 3
precursor [Canis familiaris].
Length = 687
Score = 63.9 bits (154), Expect = 2e-10
Identities = 51/169 (30%), Positives = 74/169 (43%), Gaps = 1/169 (0%)
Frame = +2
Query: 176 SALYSSSDPLTLLQAD-TVRGAVLGSRSAWAVEFFASWCGHCIAFAPTWKALANDVKDWR 352
+ L S+SD L L + R + GS VEFFA WCGHC AP ++A A +K
Sbjct: 201 AGLASASDVLELTDDNFESRISDTGSAGLMLVEFFAPWCGHCKRLAPEYEAAATRLKGIV 260
Query: 353 PALNLAALDCAEETNNAVCREFDIPGFPTVRFFKAFSRTGSGATLPVAGADVQTLRERLI 532
P LA +DC TN C ++ + G+PT++ F+ G+ A V L+++
Sbjct: 261 P---LAKVDCTANTN--TCNKYGVSGYPTLKIFRDGEEAGAYDGPRTADGIVSHLKKQA- 314
Query: 533 DALETHSDTWPPACPPLEPARLEEITGFFARNSEEYLALIFEKEGSYLG 679
PA PL R EE+ I +K+ S +G
Sbjct: 315 ----------GPASVPL-------------RTEEEFEKFISDKDASVVG 340
>ref|XP_848238.1| PREDICTED: similar to Protein disulfide-isomerase A4 precursor
(Protein ERp-72) (ERp72) isoform 3 [Canis familiaris].
Length = 643
Score = 58.2 bits (139), Expect = 1e-08
Identities = 32/105 (30%), Positives = 53/105 (50%)
Frame = +2
Query: 266 VEFFASWCGHCIAFAPTWKALANDVKDWRPALNLAALDCAEETNNAVCREFDIPGFPTVR 445
+EF+A WCGHC FAP ++ +A+ +K+ P + +A +D E +A+ F + G+PT++
Sbjct: 81 LEFYAPWCGHCKQFAPEYEKIASTLKENDPPIPVAKIDATSE--SALAGRFGVSGYPTIK 138
Query: 446 FFKAFSRTGSGATLPVAGADVQTLRERLIDALETHSDTWPPACPP 580
K G + G+ +T E + E W P PP
Sbjct: 139 ILK------KGEAVDYEGS--RTQEEIVAKVKEVSQPNWTP--PP 173
Score = 54.3 bits (129), Expect = 2e-07
Identities = 22/63 (34%), Positives = 38/63 (60%)
Frame = +2
Query: 266 VEFFASWCGHCIAFAPTWKALANDVKDWRPALNLAALDCAEETNNAVCREFDIPGFPTVR 445
VEF+A WCGHC AP ++ A ++ P + LA +D ET+ + + F++ +PT++
Sbjct: 196 VEFYAPWCGHCKKLAPEYEKAAKELSKRSPPIPLAKVDATAETD--LAKRFEVSSYPTLK 253
Query: 446 FFK 454
F+
Sbjct: 254 IFR 256
Score = 48.5 bits (114), Expect = 9e-06
Identities = 25/87 (28%), Positives = 42/87 (48%)
Frame = +2
Query: 188 SSSDPLTLLQADTVRGAVLGSRSAWAVEFFASWCGHCIAFAPTWKALANDVKDWRPALNL 367
++ P+ ++ T V+ + +EF+A WCGHC P + AL K+ R L +
Sbjct: 520 NNKGPVKVVVGKTFDSVVMDPKKDVLIEFYAPWCGHCKQLEPEYAALGKKYKN-RKNLVI 578
Query: 368 AALDCAEETNNAVCREFDIPGFPTVRF 448
A +D N+ + + GFPT+ F
Sbjct: 579 AKMDAT--ANDITSDRYRVDGFPTIYF 603
>ref|XP_539831.2| PREDICTED: similar to Protein disulfide-isomerase A4 precursor
(Protein ERp-72) (ERp72) isoform 1 [Canis familiaris].
Length = 628
Score = 58.2 bits (139), Expect = 1e-08
Identities = 32/105 (30%), Positives = 53/105 (50%)
Frame = +2
Query: 266 VEFFASWCGHCIAFAPTWKALANDVKDWRPALNLAALDCAEETNNAVCREFDIPGFPTVR 445
+EF+A WCGHC FAP ++ +A+ +K+ P + +A +D E +A+ F + G+PT++
Sbjct: 81 LEFYAPWCGHCKQFAPEYEKIASTLKENDPPIPVAKIDATSE--SALAGRFGVSGYPTIK 138
Query: 446 FFKAFSRTGSGATLPVAGADVQTLRERLIDALETHSDTWPPACPP 580
K G + G+ +T E + E W P PP
Sbjct: 139 ILK------KGEAVDYEGS--RTQEEIVAKVKEVSQPNWTP--PP 173
Score = 54.3 bits (129), Expect = 2e-07
Identities = 22/63 (34%), Positives = 38/63 (60%)
Frame = +2
Query: 266 VEFFASWCGHCIAFAPTWKALANDVKDWRPALNLAALDCAEETNNAVCREFDIPGFPTVR 445
VEF+A WCGHC AP ++ A ++ P + LA +D ET+ + + F++ +PT++
Sbjct: 196 VEFYAPWCGHCKKLAPEYEKAAKELSKRSPPIPLAKVDATAETD--LAKRFEVSSYPTLK 253
Query: 446 FFK 454
F+
Sbjct: 254 IFR 256
Score = 48.5 bits (114), Expect = 9e-06
Identities = 25/87 (28%), Positives = 42/87 (48%)
Frame = +2
Query: 188 SSSDPLTLLQADTVRGAVLGSRSAWAVEFFASWCGHCIAFAPTWKALANDVKDWRPALNL 367
++ P+ ++ T V+ + +EF+A WCGHC P + AL K+ R L +
Sbjct: 505 NNKGPVKVVVGKTFDSVVMDPKKDVLIEFYAPWCGHCKQLEPEYAALGKKYKN-RKNLVI 563
Query: 368 AALDCAEETNNAVCREFDIPGFPTVRF 448
A +D N+ + + GFPT+ F
Sbjct: 564 AKMDAT--ANDITSDRYRVDGFPTIYF 588
>ref|XP_540488.2| PREDICTED: similar to prolyl 4-hydroxylase, beta subunit [Canis
familiaris].
Length = 510
Score = 57.8 bits (138), Expect = 1e-08
Identities = 25/63 (39%), Positives = 39/63 (61%)
Frame = +2
Query: 266 VEFFASWCGHCIAFAPTWKALANDVKDWRPALNLAALDCAEETNNAVCREFDIPGFPTVR 445
VEF+A WCGHC A AP + A +K + LA +D EE++ + ++ + G+PT++
Sbjct: 48 VEFYAPWCGHCKALAPEYAKAAGTLKAEGSEIRLAKVDATEESD--LAHQYGVRGYPTIK 105
Query: 446 FFK 454
FFK
Sbjct: 106 FFK 108
>ref|XP_535988.2| PREDICTED: similar to DnaJ (Hsp40) homolog, subfamily C, member 10
isoform 1 [Canis familiaris].
Length = 794
Score = 51.6 bits (122), Expect = 1e-06
Identities = 26/80 (32%), Positives = 41/80 (51%)
Frame = +2
Query: 212 LQADTVRGAVLGSRSAWAVEFFASWCGHCIAFAPTWKALANDVKDWRPALNLAALDCAEE 391
L T VL ++ W V+F+A WCG C FAP ++ LA +K + +DC +
Sbjct: 676 LTPQTFNEKVLQGKNHWVVDFYAPWCGPCQNFAPEFELLARMIKG---KVKAGKVDC--Q 730
Query: 392 TNNAVCREFDIPGFPTVRFF 451
C++ I +PTV+F+
Sbjct: 731 AYGQTCQKAGIRAYPTVKFY 750
>ref|XP_862766.1| PREDICTED: similar to DnaJ (Hsp40) homolog, subfamily C, member 10
isoform 6 [Canis familiaris].
Length = 748
Score = 51.6 bits (122), Expect = 1e-06
Identities = 26/80 (32%), Positives = 41/80 (51%)
Frame = +2
Query: 212 LQADTVRGAVLGSRSAWAVEFFASWCGHCIAFAPTWKALANDVKDWRPALNLAALDCAEE 391
L T VL ++ W V+F+A WCG C FAP ++ LA +K + +DC +
Sbjct: 630 LTPQTFNEKVLQGKNHWVVDFYAPWCGPCQNFAPEFELLARMIKG---KVKAGKVDC--Q 684
Query: 392 TNNAVCREFDIPGFPTVRFF 451
C++ I +PTV+F+
Sbjct: 685 AYGQTCQKAGIRAYPTVKFY 704
>ref|XP_862743.1| PREDICTED: similar to DnaJ (Hsp40) homolog, subfamily C, member 10
isoform 5 [Canis familiaris].
Length = 525
Score = 51.6 bits (122), Expect = 1e-06
Identities = 26/80 (32%), Positives = 41/80 (51%)
Frame = +2
Query: 212 LQADTVRGAVLGSRSAWAVEFFASWCGHCIAFAPTWKALANDVKDWRPALNLAALDCAEE 391
L T VL ++ W V+F+A WCG C FAP ++ LA +K + +DC +
Sbjct: 407 LTPQTFNEKVLQGKNHWVVDFYAPWCGPCQNFAPEFELLARMIKG---KVKAGKVDC--Q 461
Query: 392 TNNAVCREFDIPGFPTVRFF 451
C++ I +PTV+F+
Sbjct: 462 AYGQTCQKAGIRAYPTVKFY 481
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 34,186,362
Number of extensions: 946315
Number of successful extensions: 4800
Number of sequences better than 1.0e-05: 13
Number of HSP's gapped: 4635
Number of HSP's successfully gapped: 18
Length of query: 311
Length of database: 18,874,504
Length adjustment: 103
Effective length of query: 208
Effective length of database: 15,440,896
Effective search space: 3211706368
Effective search space used: 3211706368
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003970
(934 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001004128.1| sulfhydryl oxidase 1 isoform b [Homo sapiens]. 429 e-120
Alignment gi|NP_002817.2| sulfhydryl oxidase 1 isoform a [Homo sapiens]. 429 e-120
Alignment gi|NP_859052.3| sulfhydryl oxidase 2 precursor [Homo sapiens]. 217 1e-56
Alignment gi|NP_005733.1| protein disulfide-isomerase A6 precursor [Homo ... 68 1e-11
Alignment gi|NP_005304.3| protein disulfide-isomerase A3 precursor [Homo ... 63 4e-10
Alignment gi|NP_001139021.1| thioredoxin domain-containing protein 5 isof... 62 1e-09
Alignment gi|NP_110437.2| thioredoxin domain-containing protein 5 isoform... 62 1e-09
Alignment gi|NP_004902.1| protein disulfide-isomerase A4 precursor [Homo ... 60 3e-09
Alignment gi|NP_000909.2| protein disulfide-isomerase precursor [Homo sap... 57 2e-08
Alignment gi|NP_006840.2| protein disulfide-isomerase A2 precursor [Homo ... 52 1e-06
>ref|NP_001004128.1| sulfhydryl oxidase 1 isoform b [Homo sapiens].
Length = 604
Score = 429 bits (1104), Expect = e-120
Identities = 209/241 (86%), Positives = 223/241 (92%)
Frame = +2
Query: 173 RSALYSSSDPLTLLQADTVRGAVLGSRSAWAVEFFASWCGHCIAFAPTWKALANDVKDWR 352
RSALYS SDPLTLLQADTVRGAVLGSRSAWAVEFFASWCGHCIAFAPTWKALA DVK WR
Sbjct: 32 RSALYSPSDPLTLLQADTVRGAVLGSRSAWAVEFFASWCGHCIAFAPTWKALAEDVKAWR 91
Query: 353 PALNLAALDCAEETNNAVCREFDIPGFPTVRFFKAFSRTGSGATLPVAGADVQTLRERLI 532
PAL LAALDCAEETN+AVCR+F+IPGFPTVRFFKAF++ GSGA PVAGADVQTLRERLI
Sbjct: 92 PALYLAALDCAEETNSAVCRDFNIPGFPTVRFFKAFTKNGSGAVFPVAGADVQTLRERLI 151
Query: 533 DALETHSDTWPPACPPLEPARLEEITGFFARNSEEYLALIFEKEGSYLGREVALDLSQRQ 712
DALE+H DTWPPACPPLEPA+LEEI GFFARN+EEYLALIFEK GSYLGREVALDLSQ +
Sbjct: 152 DALESHHDTWPPACPPLEPAKLEEIDGFFARNNEEYLALIFEKGGSYLGREVALDLSQHK 211
Query: 713 GIAVRRVLNTERNVVSKFSVTDFPSCYLLFRNGSFLRVPVLMEFRSFYTAYLQKISGVIR 892
G+AVRRVLNTE NVV KF VTDFPSCYLLFRNGS RVPVLME RSFYTAYLQ++SG+ R
Sbjct: 212 GVAVRRVLNTEANVVRKFGVTDFPSCYLLFRNGSVSRVPVLMESRSFYTAYLQRLSGLTR 271
Query: 893 K 895
+
Sbjct: 272 E 272
>ref|NP_002817.2| sulfhydryl oxidase 1 isoform a [Homo sapiens].
Length = 747
Score = 429 bits (1104), Expect = e-120
Identities = 209/241 (86%), Positives = 223/241 (92%)
Frame = +2
Query: 173 RSALYSSSDPLTLLQADTVRGAVLGSRSAWAVEFFASWCGHCIAFAPTWKALANDVKDWR 352
RSALYS SDPLTLLQADTVRGAVLGSRSAWAVEFFASWCGHCIAFAPTWKALA DVK WR
Sbjct: 32 RSALYSPSDPLTLLQADTVRGAVLGSRSAWAVEFFASWCGHCIAFAPTWKALAEDVKAWR 91
Query: 353 PALNLAALDCAEETNNAVCREFDIPGFPTVRFFKAFSRTGSGATLPVAGADVQTLRERLI 532
PAL LAALDCAEETN+AVCR+F+IPGFPTVRFFKAF++ GSGA PVAGADVQTLRERLI
Sbjct: 92 PALYLAALDCAEETNSAVCRDFNIPGFPTVRFFKAFTKNGSGAVFPVAGADVQTLRERLI 151
Query: 533 DALETHSDTWPPACPPLEPARLEEITGFFARNSEEYLALIFEKEGSYLGREVALDLSQRQ 712
DALE+H DTWPPACPPLEPA+LEEI GFFARN+EEYLALIFEK GSYLGREVALDLSQ +
Sbjct: 152 DALESHHDTWPPACPPLEPAKLEEIDGFFARNNEEYLALIFEKGGSYLGREVALDLSQHK 211
Query: 713 GIAVRRVLNTERNVVSKFSVTDFPSCYLLFRNGSFLRVPVLMEFRSFYTAYLQKISGVIR 892
G+AVRRVLNTE NVV KF VTDFPSCYLLFRNGS RVPVLME RSFYTAYLQ++SG+ R
Sbjct: 212 GVAVRRVLNTEANVVRKFGVTDFPSCYLLFRNGSVSRVPVLMESRSFYTAYLQRLSGLTR 271
Query: 893 K 895
+
Sbjct: 272 E 272
>ref|NP_859052.3| sulfhydryl oxidase 2 precursor [Homo sapiens].
Length = 698
Score = 217 bits (553), Expect = 1e-56
Identities = 100/241 (41%), Positives = 156/241 (64%), Gaps = 2/241 (0%)
Frame = +2
Query: 188 SSSDPLTLLQADTVRGAVLGSRSAWAVEFFASWCGHCIAFAPTWKALANDVKDWRPALNL 367
+ D + +L + +VRGA S +AW V+F++SWCGHCI +APTW+ALA DV+DW A+ +
Sbjct: 58 AGEDAVWVLDSGSVRGATANSSAAWLVQFYSSWCGHCIGYAPTWRALAGDVRDWASAIRV 117
Query: 368 AALDCAEETNNAVCREFDIPGFPTVRFFKAFSRT-GSGATLPVAGADVQTLRERLIDALE 544
AALDC EE N AVC ++DI +PT R+FKAF++ +G +++T+R+ +ID L+
Sbjct: 118 AALDCMEEKNQAVCHDYDIHFYPTFRYFKAFTKEFTTGENFKGPDRELRTVRQTMIDFLQ 177
Query: 545 THSD-TWPPACPPLEPARLEEITGFFARNSEEYLALIFEKEGSYLGREVALDLSQRQGIA 721
H++ + PPACP L+P + ++ Y+A++FE SYLGREV LDL + I
Sbjct: 178 NHTEGSRPPACPRLDPIQPSDVLSLLDNRGSHYVAIVFESNSSYLGREVILDLIPYESIV 237
Query: 722 VRRVLNTERNVVSKFSVTDFPSCYLLFRNGSFLRVPVLMEFRSFYTAYLQKISGVIRKPV 901
V R L+ ++ + K V+ PSCYL++ NGS + V+ R+F+++YL+ + V +K +
Sbjct: 238 VTRALDGDKAFLEKLGVSSVPSCYLIYPNGSHGLINVVKPLRAFFSSYLKSLPDVRKKSL 297
Query: 902 P 904
P
Sbjct: 298 P 298
>ref|NP_005733.1| protein disulfide-isomerase A6 precursor [Homo sapiens].
Length = 440
Score = 67.8 bits (164), Expect = 1e-11
Identities = 33/92 (35%), Positives = 51/92 (55%)
Frame = +2
Query: 176 SALYSSSDPLTLLQADTVRGAVLGSRSAWAVEFFASWCGHCIAFAPTWKALANDVKDWRP 355
+ LYSSSD + L V+ S S W VEF+A WCGHC P WK A +KD
Sbjct: 18 NGLYSSSDDVIELTPSNFNREVIQSDSLWLVEFYAPWCGHCQRLTPEWKKAATALKD--- 74
Query: 356 ALNLAALDCAEETNNAVCREFDIPGFPTVRFF 451
+ + A+D + ++++ ++ + GFPT++ F
Sbjct: 75 VVKVGAVDA--DKHHSLGGQYGVQGFPTIKIF 104
Score = 67.8 bits (164), Expect = 1e-11
Identities = 43/128 (33%), Positives = 61/128 (47%), Gaps = 1/128 (0%)
Frame = +2
Query: 188 SSSDPLTLLQADTVRGAVLGSRSAWAVEFFASWCGHCIAFAPTWKALANDVKD-WRPALN 364
SS + L D+ VL S W VEF+A WCGHC P W A A++VK+ + +
Sbjct: 157 SSKKDVIELTDDSFDKNVLDSEDVWMVEFYAPWCGHCKNLEPEWAAAASEVKEQTKGKVK 216
Query: 365 LAALDCAEETNNAVCREFDIPGFPTVRFFKAFSRTGSGATLPVAGADVQTLRERLIDALE 544
LAA+D N + + I GFPT++ F+ PV +T + + AL+
Sbjct: 217 LAAVDAT--VNQVLASRYGIRGFPTIKIFQK-------GESPVDYDGGRTRSDIVSRALD 267
Query: 545 THSDTWPP 568
SD PP
Sbjct: 268 LFSDNAPP 275
>ref|NP_005304.3| protein disulfide-isomerase A3 precursor [Homo sapiens].
Length = 505
Score = 62.8 bits (151), Expect = 4e-10
Identities = 44/145 (30%), Positives = 63/145 (43%)
Frame = +2
Query: 245 GSRSAWAVEFFASWCGHCIAFAPTWKALANDVKDWRPALNLAALDCAEETNNAVCREFDI 424
GS VEFFA WCGHC AP ++A A +K P LA +DC TN C ++ +
Sbjct: 43 GSAGLMLVEFFAPWCGHCKRLAPEYEAAATRLKGIVP---LAKVDCTANTN--TCNKYGV 97
Query: 425 PGFPTVRFFKAFSRTGSGATLPVAGADVQTLRERLIDALETHSDTWPPACPPLEPARLEE 604
G+PT++ F+ G+ A V L+++ PA PL
Sbjct: 98 SGYPTLKIFRDGEEAGAYDGPRTADGIVSHLKKQA-----------GPASVPL------- 139
Query: 605 ITGFFARNSEEYLALIFEKEGSYLG 679
R EE+ I +K+ S +G
Sbjct: 140 ------RTEEEFKKFISDKDASIVG 158
>ref|NP_001139021.1| thioredoxin domain-containing protein 5 isoform 3 [Homo sapiens].
Length = 324
Score = 61.6 bits (148), Expect = 1e-09
Identities = 57/204 (27%), Positives = 97/204 (47%), Gaps = 22/204 (10%)
Frame = +2
Query: 266 VEFFASWCGHCIAFAPTWKALANDVKDWRPALNLAALDCAEETNNAVCREFDIPGFPTVR 445
++FFA WCGHC A APTW+ LA + + + + +DC + + +C + G+PT+
Sbjct: 102 IKFFAPWCGHCKALAPTWEQLALGL-EHSETVKIGKVDCTQ--HYELCSGNQVRGYPTLL 158
Query: 446 FFKAFSRTGSGATLPVAGADVQTLRERLIDALET----HSDTWPPACPPLEPARLE---- 601
+F R G D+++LRE + L+ ++T P+ P+ A E
Sbjct: 159 WF----RDGKKVDQYKGKRDLESLREYVESQLQRTETGATETVTPSEAPVLAAEPEADKG 214
Query: 602 EITGFFARNSEEYLA--LIFEK-EGSYLGREVAL-----DLSQRQ-----GIAVRRV-LN 739
+ N ++ +A + F K + G L +LS+++ G+ + V
Sbjct: 215 TVLALTENNFDDTIAEGITFIKFYAPWCGHCKTLAPTWEELSKKEFPGLAGVKIAEVDCT 274
Query: 740 TERNVVSKFSVTDFPSCYLLFRNG 811
ERN+ SK+SV +P+ LLFR G
Sbjct: 275 AERNICSKYSVRGYPT-LLLFRGG 297
Score = 58.2 bits (139), Expect = 1e-08
Identities = 27/84 (32%), Positives = 44/84 (52%)
Frame = +2
Query: 266 VEFFASWCGHCIAFAPTWKALANDVKDWRPALNLAALDCAEETNNAVCREFDIPGFPTVR 445
++F+A WCGHC APTW+ L+ + +A +DC E N +C ++ + G+PT+
Sbjct: 235 IKFYAPWCGHCKTLAPTWEELSKKEFPGLAGVKIAEVDCTAERN--ICSKYSVRGYPTLL 292
Query: 446 FFKAFSRTGSGATLPVAGADVQTL 517
F R G + G D+ +L
Sbjct: 293 LF----RGGKKVSEHSGGRDLDSL 312
>ref|NP_110437.2| thioredoxin domain-containing protein 5 isoform 1 precursor [Homo
sapiens].
Length = 432
Score = 61.6 bits (148), Expect = 1e-09
Identities = 57/204 (27%), Positives = 97/204 (47%), Gaps = 22/204 (10%)
Frame = +2
Query: 266 VEFFASWCGHCIAFAPTWKALANDVKDWRPALNLAALDCAEETNNAVCREFDIPGFPTVR 445
++FFA WCGHC A APTW+ LA + + + + +DC + + +C + G+PT+
Sbjct: 210 IKFFAPWCGHCKALAPTWEQLALGL-EHSETVKIGKVDCTQ--HYELCSGNQVRGYPTLL 266
Query: 446 FFKAFSRTGSGATLPVAGADVQTLRERLIDALET----HSDTWPPACPPLEPARLE---- 601
+F R G D+++LRE + L+ ++T P+ P+ A E
Sbjct: 267 WF----RDGKKVDQYKGKRDLESLREYVESQLQRTETGATETVTPSEAPVLAAEPEADKG 322
Query: 602 EITGFFARNSEEYLA--LIFEK-EGSYLGREVAL-----DLSQRQ-----GIAVRRV-LN 739
+ N ++ +A + F K + G L +LS+++ G+ + V
Sbjct: 323 TVLALTENNFDDTIAEGITFIKFYAPWCGHCKTLAPTWEELSKKEFPGLAGVKIAEVDCT 382
Query: 740 TERNVVSKFSVTDFPSCYLLFRNG 811
ERN+ SK+SV +P+ LLFR G
Sbjct: 383 AERNICSKYSVRGYPT-LLLFRGG 405
Score = 58.2 bits (139), Expect = 1e-08
Identities = 41/133 (30%), Positives = 58/133 (43%), Gaps = 2/133 (1%)
Frame = +2
Query: 254 SAWAVEFFASWCGHCIAFAPTWKALANDVKDWRPA-LNLAALDCAEETNNAVCREFDIPG 430
+A V FFA WCGHC PTW L + A + +A +DC ++ VC + G
Sbjct: 78 AAHFVMFFAPWCGHCQRLQPTWNDLGDKYNSMEDAKVYVAKVDCTAHSD--VCSAQGVRG 135
Query: 431 FPTVRFFKAFSRTGSGATLPVAGADVQTLRERLIDALETHSDTWPPAC-PPLEPARLEEI 607
+PT++ FK G A D QTL ++ L T P PP P + +
Sbjct: 136 YPTLKLFK----PGQEAVKYQGPRDFQTLENWMLQTLNEEPVTPEPEVEPPSAPELKQGL 191
Query: 608 TGFFARNSEEYLA 646
A N E ++A
Sbjct: 192 YELSASNFELHVA 204
Score = 58.2 bits (139), Expect = 1e-08
Identities = 27/84 (32%), Positives = 44/84 (52%)
Frame = +2
Query: 266 VEFFASWCGHCIAFAPTWKALANDVKDWRPALNLAALDCAEETNNAVCREFDIPGFPTVR 445
++F+A WCGHC APTW+ L+ + +A +DC E N +C ++ + G+PT+
Sbjct: 343 IKFYAPWCGHCKTLAPTWEELSKKEFPGLAGVKIAEVDCTAERN--ICSKYSVRGYPTLL 400
Query: 446 FFKAFSRTGSGATLPVAGADVQTL 517
F R G + G D+ +L
Sbjct: 401 LF----RGGKKVSEHSGGRDLDSL 420
>ref|NP_004902.1| protein disulfide-isomerase A4 precursor [Homo sapiens].
Length = 645
Score = 60.1 bits (144), Expect = 3e-09
Identities = 33/105 (31%), Positives = 53/105 (50%)
Frame = +2
Query: 266 VEFFASWCGHCIAFAPTWKALANDVKDWRPALNLAALDCAEETNNAVCREFDIPGFPTVR 445
+EF+A WCGHC FAP ++ +AN +KD P + +A +D + + + FD+ G+PT++
Sbjct: 84 LEFYAPWCGHCKQFAPEYEKIANILKDKDPPIPVAKIDAT--SASVLASRFDVSGYPTIK 141
Query: 446 FFKAFSRTGSGATLPVAGADVQTLRERLIDALETHSDTWPPACPP 580
K G + G+ +T E + E W P PP
Sbjct: 142 ILK------KGQAVDYEGS--RTQEEIVAKVREVSQPDWTP--PP 176
Score = 58.2 bits (139), Expect = 1e-08
Identities = 24/63 (38%), Positives = 39/63 (61%)
Frame = +2
Query: 266 VEFFASWCGHCIAFAPTWKALANDVKDWRPALNLAALDCAEETNNAVCREFDIPGFPTVR 445
VEF+A WCGHC AP ++ A ++ P + LA +D ET+ + + FD+ G+PT++
Sbjct: 199 VEFYAPWCGHCKKLAPEYEKAAKELSKRSPPIPLAKVDATAETD--LAKRFDVSGYPTLK 256
Query: 446 FFK 454
F+
Sbjct: 257 IFR 259
>ref|NP_000909.2| protein disulfide-isomerase precursor [Homo sapiens].
Length = 508
Score = 57.0 bits (136), Expect = 2e-08
Identities = 24/63 (38%), Positives = 40/63 (63%)
Frame = +2
Query: 266 VEFFASWCGHCIAFAPTWKALANDVKDWRPALNLAALDCAEETNNAVCREFDIPGFPTVR 445
VEF+A WCGHC A AP + A +K + LA +D EE++ + +++ + G+PT++
Sbjct: 46 VEFYAPWCGHCKALAPEYAKAAGKLKAEGSEIRLAKVDATEESD--LAQQYGVRGYPTIK 103
Query: 446 FFK 454
FF+
Sbjct: 104 FFR 106
>ref|NP_006840.2| protein disulfide-isomerase A2 precursor [Homo sapiens].
Length = 525
Score = 51.6 bits (122), Expect = 1e-06
Identities = 30/91 (32%), Positives = 45/91 (49%)
Frame = +2
Query: 197 DPLTLLQADTVRGAVLGSRSAWAVEFFASWCGHCIAFAPTWKALANDVKDWRPALNLAAL 376
D + +L T+ G L A VEF+A WCGHC A AP + A + + LA +
Sbjct: 42 DGILVLSRHTL-GLALREHPALLVEFYAPWCGHCQALAPEYSKAAAVLAAESMVVTLAKV 100
Query: 377 DCAEETNNAVCREFDIPGFPTVRFFKAFSRT 469
D + EF + +PT++FF+ +RT
Sbjct: 101 D--GPAQRELAEEFGVTEYPTLKFFRNGNRT 129
Score = 50.4 bits (119), Expect = 2e-06
Identities = 36/110 (32%), Positives = 52/110 (47%), Gaps = 2/110 (1%)
Frame = +2
Query: 266 VEFFASWCGHCIAFAPTWKALANDVKDWRPALNLAALDCAEETNNAVCREFDIPGFPTVR 445
V+F+A WC HC AP W+ALA +D + +A LD +A F + GFPT++
Sbjct: 411 VKFYAPWCTHCKEMAPAWEALAEKYQDHEDII-IAELDATANELDA----FAVHGFPTLK 465
Query: 446 FFKAFSRTGSGATLPVAGADVQTLRERLID--ALETHSDTWPPACPPLEP 589
+F A G + D++T + L + L T PA P EP
Sbjct: 466 YFPA--GPGRKVIEYKSTRDLETFSKFLDNGGVLPTEEPPEEPAAPFPEP 513
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 33,479,692
Number of extensions: 923125
Number of successful extensions: 4429
Number of sequences better than 1.0e-05: 13
Number of HSP's gapped: 4348
Number of HSP's successfully gapped: 19
Length of query: 311
Length of database: 18,297,164
Length adjustment: 102
Effective length of query: 209
Effective length of database: 14,934,836
Effective search space: 3121380724
Effective search space used: 3121380724
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003970
(934 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_075757.1| sulfhydryl oxidase 1 isoform b [Mus musculus]. 389 e-108
Alignment gi|NP_001020116.1| sulfhydryl oxidase 1 isoform a [Mus musculus]. 389 e-108
Alignment gi|NP_705787.1| sulfhydryl oxidase 2 [Mus musculus]. 226 2e-59
Alignment gi|XP_001476035.1| PREDICTED: protein disulfide-isomerase A6-li... 70 3e-12
Alignment gi|XP_003085845.1| PREDICTED: protein disulfide-isomerase A6-li... 70 3e-12
Alignment gi|NP_082235.1| protein disulfide-isomerase A6 [Mus musculus]. 69 4e-12
Alignment gi|NP_663342.3| thioredoxin domain-containing protein 5 precurs... 67 3e-11
Alignment gi|NP_031978.2| protein disulfide-isomerase A3 precursor [Mus m... 64 2e-10
Alignment gi|NP_035162.1| protein disulfide-isomerase precursor [Mus musc... 60 2e-09
Alignment gi|NP_033917.2| protein disulfide-isomerase A4 [Mus musculus]. 59 4e-09
>ref|NP_075757.1| sulfhydryl oxidase 1 isoform b [Mus musculus].
Length = 568
Score = 389 bits (998), Expect = e-108
Identities = 187/243 (76%), Positives = 209/243 (86%)
Frame = +2
Query: 176 SALYSSSDPLTLLQADTVRGAVLGSRSAWAVEFFASWCGHCIAFAPTWKALANDVKDWRP 355
S LYSSSDPLTLL AD+VR VLGS SAWAVEFFASWCGHCIAFAPTWK LANDVKDWRP
Sbjct: 36 SVLYSSSDPLTLLDADSVRPTVLGSSSAWAVEFFASWCGHCIAFAPTWKELANDVKDWRP 95
Query: 356 ALNLAALDCAEETNNAVCREFDIPGFPTVRFFKAFSRTGSGATLPVAGADVQTLRERLID 535
ALNLA LDCAEETN+AVCREF+I GFPTVRFF+AF++ GSGATLP AGA+VQTLR RLID
Sbjct: 96 ALNLAVLDCAEETNSAVCREFNIAGFPTVRFFQAFTKNGSGATLPGAGANVQTLRMRLID 155
Query: 536 ALETHSDTWPPACPPLEPARLEEITGFFARNSEEYLALIFEKEGSYLGREVALDLSQRQG 715
ALE+H DTWPPACPPLEPA+L +I GFF RN +YLAL+FE+E SYLGREV LDLSQ
Sbjct: 156 ALESHRDTWPPACPPLEPAKLNDIDGFFTRNKADYLALVFEREDSYLGREVTLDLSQYHA 215
Query: 716 IAVRRVLNTERNVVSKFSVTDFPSCYLLFRNGSFLRVPVLMEFRSFYTAYLQKISGVIRK 895
+AVRRVLNTE ++V+KF VTDFPSCYLL RNGS RVPVL+E RSFYT+YL+ + G+ R
Sbjct: 216 VAVRRVLNTESDLVNKFGVTDFPSCYLLLRNGSVSRVPVLVESRSFYTSYLRGLPGLTRD 275
Query: 896 PVP 904
P
Sbjct: 276 APP 278
>ref|NP_001020116.1| sulfhydryl oxidase 1 isoform a [Mus musculus].
Length = 748
Score = 389 bits (998), Expect = e-108
Identities = 187/243 (76%), Positives = 209/243 (86%)
Frame = +2
Query: 176 SALYSSSDPLTLLQADTVRGAVLGSRSAWAVEFFASWCGHCIAFAPTWKALANDVKDWRP 355
S LYSSSDPLTLL AD+VR VLGS SAWAVEFFASWCGHCIAFAPTWK LANDVKDWRP
Sbjct: 36 SVLYSSSDPLTLLDADSVRPTVLGSSSAWAVEFFASWCGHCIAFAPTWKELANDVKDWRP 95
Query: 356 ALNLAALDCAEETNNAVCREFDIPGFPTVRFFKAFSRTGSGATLPVAGADVQTLRERLID 535
ALNLA LDCAEETN+AVCREF+I GFPTVRFF+AF++ GSGATLP AGA+VQTLR RLID
Sbjct: 96 ALNLAVLDCAEETNSAVCREFNIAGFPTVRFFQAFTKNGSGATLPGAGANVQTLRMRLID 155
Query: 536 ALETHSDTWPPACPPLEPARLEEITGFFARNSEEYLALIFEKEGSYLGREVALDLSQRQG 715
ALE+H DTWPPACPPLEPA+L +I GFF RN +YLAL+FE+E SYLGREV LDLSQ
Sbjct: 156 ALESHRDTWPPACPPLEPAKLNDIDGFFTRNKADYLALVFEREDSYLGREVTLDLSQYHA 215
Query: 716 IAVRRVLNTERNVVSKFSVTDFPSCYLLFRNGSFLRVPVLMEFRSFYTAYLQKISGVIRK 895
+AVRRVLNTE ++V+KF VTDFPSCYLL RNGS RVPVL+E RSFYT+YL+ + G+ R
Sbjct: 216 VAVRRVLNTESDLVNKFGVTDFPSCYLLLRNGSVSRVPVLVESRSFYTSYLRGLPGLTRD 275
Query: 896 PVP 904
P
Sbjct: 276 APP 278
>ref|NP_705787.1| sulfhydryl oxidase 2 [Mus musculus].
Length = 639
Score = 226 bits (576), Expect = 2e-59
Identities = 108/236 (45%), Positives = 157/236 (66%), Gaps = 2/236 (0%)
Frame = +2
Query: 194 SDPLTLLQADTVRGAVLGSRSAWAVEFFASWCGHCIAFAPTWKALANDVKDWRPALNLAA 373
SD + LL + +VR A S +AW V+F +SWCGHCI +APTW+ALA DV+DW A+ +AA
Sbjct: 54 SDAVWLLDSGSVRSATGNSSAAWLVQFHSSWCGHCIGYAPTWRALAADVRDWAAAIRVAA 113
Query: 374 LDCAEETNNAVCREFDIPGFPTVRFFKAFSRT-GSGATLPVAGADVQTLRERLIDALETH 550
LDCAEE N VCR +DI +PT R+FKAF++ +G +++T+R+ +ID L+ H
Sbjct: 114 LDCAEEKNQDVCRTYDIHFYPTFRYFKAFTKEFTTGENFKGPDRELRTVRQTMIDFLQNH 173
Query: 551 SD-TWPPACPPLEPARLEEITGFFARNSEEYLALIFEKEGSYLGREVALDLSQRQGIAVR 727
++ TWPPACPPL+P + +I F +S +Y A++FE GSY+GREV LDL + I V
Sbjct: 174 TEGTWPPACPPLDPIQSSDILSFMDSHSGQYHAIVFESNGSYVGREVILDLIPYENIMVS 233
Query: 728 RVLNTERNVVSKFSVTDFPSCYLLFRNGSFLRVPVLMEFRSFYTAYLQKISGVIRK 895
R L+T++ + +T PSCYL++ NGS V V RSF++++L+ + V +K
Sbjct: 234 RALDTDKAFLGTLGITSVPSCYLIYPNGSHGLVNVAKPLRSFFSSHLKSLPDVRKK 289
>ref|XP_001476035.1| PREDICTED: protein disulfide-isomerase A6-like [Mus musculus].
Length = 391
Score = 69.7 bits (169), Expect = 3e-12
Identities = 44/128 (34%), Positives = 60/128 (46%), Gaps = 1/128 (0%)
Frame = +2
Query: 188 SSSDPLTLLQADTVRGAVLGSRSAWAVEFFASWCGHCIAFAPTWKALANDVKD-WRPALN 364
SS + L DT VL S W VEF+A WCGHC P W A A +VK+ + +
Sbjct: 162 SSKKDVVELTDDTFDKNVLDSEDVWMVEFYAPWCGHCKNLEPEWAAAATEVKEQTKGKVK 221
Query: 365 LAALDCAEETNNAVCREFDIPGFPTVRFFKAFSRTGSGATLPVAGADVQTLRERLIDALE 544
LAA+D N + + I GFPT++ F+ PV +T + + AL+
Sbjct: 222 LAAVDAT--VNQVLASRYGIKGFPTIKIFQK-------GESPVDYDGGRTRSDIVSRALD 272
Query: 545 THSDTWPP 568
SD PP
Sbjct: 273 LFSDNAPP 280
Score = 66.2 bits (160), Expect = 3e-11
Identities = 40/127 (31%), Positives = 60/127 (47%), Gaps = 9/127 (7%)
Frame = +2
Query: 176 SALYSSSDPLTLLQADTVRGAVLGSRSAWAVEFFASWCGHCIAFAPTWKALANDVKDWRP 355
S LYSSSD + L V+ S W VEF+A WCGHC P WK A +KD
Sbjct: 23 SGLYSSSDDVIELTPSNFNREVIQSDGLWLVEFYAPWCGHCQRLTPEWKKAATALKD--- 79
Query: 356 ALNLAALDCAEETNNAVCREFDIPGFPTVRFFKA---------FSRTGSGATLPVAGADV 508
+ + A++ + + ++ ++ + GFPT++ F A RTG A
Sbjct: 80 VVKVGAVNA--DKHQSLGGQYGVQGFPTIKIFGANKNKPEDYQGGRTGEAIVDAALSALR 137
Query: 509 QTLRERL 529
Q +++RL
Sbjct: 138 QLVKDRL 144
>ref|XP_003085845.1| PREDICTED: protein disulfide-isomerase A6-like [Mus musculus].
Length = 432
Score = 69.7 bits (169), Expect = 3e-12
Identities = 44/128 (34%), Positives = 60/128 (46%), Gaps = 1/128 (0%)
Frame = +2
Query: 188 SSSDPLTLLQADTVRGAVLGSRSAWAVEFFASWCGHCIAFAPTWKALANDVKD-WRPALN 364
SS + L DT VL S W VEF+A WCGHC P W A A +VK+ + +
Sbjct: 162 SSKKDVVELTDDTFDKNVLDSEDVWMVEFYAPWCGHCKNLEPEWAAAATEVKEQTKGKVK 221
Query: 365 LAALDCAEETNNAVCREFDIPGFPTVRFFKAFSRTGSGATLPVAGADVQTLRERLIDALE 544
LAA+D N + + I GFPT++ F+ PV +T + + AL+
Sbjct: 222 LAAVDAT--VNQVLASRYGIKGFPTIKIFQK-------GESPVDYDGGRTRSDIVSRALD 272
Query: 545 THSDTWPP 568
SD PP
Sbjct: 273 LFSDNAPP 280
Score = 66.2 bits (160), Expect = 3e-11
Identities = 40/127 (31%), Positives = 60/127 (47%), Gaps = 9/127 (7%)
Frame = +2
Query: 176 SALYSSSDPLTLLQADTVRGAVLGSRSAWAVEFFASWCGHCIAFAPTWKALANDVKDWRP 355
S LYSSSD + L V+ S W VEF+A WCGHC P WK A +KD
Sbjct: 23 SGLYSSSDDVIELTPSNFNREVIQSDGLWLVEFYAPWCGHCQRLTPEWKKAATALKD--- 79
Query: 356 ALNLAALDCAEETNNAVCREFDIPGFPTVRFFKA---------FSRTGSGATLPVAGADV 508
+ + A++ + + ++ ++ + GFPT++ F A RTG A
Sbjct: 80 VVKVGAVNA--DKHQSLGGQYGVQGFPTIKIFGANKNKPEDYQGGRTGEAIVDAALSALR 137
Query: 509 QTLRERL 529
Q +++RL
Sbjct: 138 QLVKDRL 144
>ref|NP_082235.1| protein disulfide-isomerase A6 [Mus musculus].
Length = 445
Score = 69.3 bits (168), Expect = 4e-12
Identities = 44/128 (34%), Positives = 60/128 (46%), Gaps = 1/128 (0%)
Frame = +2
Query: 188 SSSDPLTLLQADTVRGAVLGSRSAWAVEFFASWCGHCIAFAPTWKALANDVKD-WRPALN 364
SS + L DT VL S W VEF+A WCGHC P W A A +VK+ + +
Sbjct: 162 SSKKDVVELTDDTFDKNVLDSEDVWMVEFYAPWCGHCKNLEPEWAAAATEVKEQTKGKVK 221
Query: 365 LAALDCAEETNNAVCREFDIPGFPTVRFFKAFSRTGSGATLPVAGADVQTLRERLIDALE 544
LAA+D N + + I GFPT++ F+ PV +T + + AL+
Sbjct: 222 LAAVDAT--MNQVLASRYGIKGFPTIKIFQK-------GESPVDYDGGRTRSDIVSRALD 272
Query: 545 THSDTWPP 568
SD PP
Sbjct: 273 LFSDNAPP 280
Score = 66.2 bits (160), Expect = 3e-11
Identities = 40/127 (31%), Positives = 60/127 (47%), Gaps = 9/127 (7%)
Frame = +2
Query: 176 SALYSSSDPLTLLQADTVRGAVLGSRSAWAVEFFASWCGHCIAFAPTWKALANDVKDWRP 355
S LYSSSD + L V+ S W VEF+A WCGHC P WK A +KD
Sbjct: 23 SGLYSSSDDVIELTPSNFNREVIQSDGLWLVEFYAPWCGHCQRLTPEWKKAATALKD--- 79
Query: 356 ALNLAALDCAEETNNAVCREFDIPGFPTVRFFKA---------FSRTGSGATLPVAGADV 508
+ + A++ + + ++ ++ + GFPT++ F A RTG A
Sbjct: 80 VVKVGAVNA--DKHQSLGGQYGVQGFPTIKIFGANKNKPEDYQGGRTGEAIVDAALSALR 137
Query: 509 QTLRERL 529
Q +++RL
Sbjct: 138 QLVKDRL 144
>ref|NP_663342.3| thioredoxin domain-containing protein 5 precursor [Mus musculus].
Length = 417
Score = 66.6 bits (161), Expect = 3e-11
Identities = 62/204 (30%), Positives = 98/204 (48%), Gaps = 22/204 (10%)
Frame = +2
Query: 266 VEFFASWCGHCIAFAPTWKALANDVKDWRPALNLAALDCAEETNNAVCREFDIPGFPTVR 445
++FFA WCGHC A APTW+ LA + + + + +DC + + AVC E + G+PT+
Sbjct: 196 IKFFAPWCGHCKALAPTWEQLALGL-EHSETVKIGKVDCTQ--HYAVCSEHQVRGYPTLL 252
Query: 446 FFKAFSRTGSGATLPVAGADVQTLRERLIDALETHSDTWPPACPPLE-PARLEEITG--- 613
+F R G D+++LR+ + L+ S+ P P E P E TG
Sbjct: 253 WF----RDGKKVDQYKGKRDLESLRDYVQSQLQ-GSEAAPETVEPSEAPVMAAEPTGDKG 307
Query: 614 ----FFARNSEEYLA--LIFEK-EGSYLGREVAL-----DLSQRQ-----GIAVRRV-LN 739
++ E+ +A + F K + G L +LS+++ + + V
Sbjct: 308 TVLALTEKSFEDTIAQGITFVKFYAPWCGHCKNLAPTWEELSKKEFPGLSDVTIAEVDCT 367
Query: 740 TERNVVSKFSVTDFPSCYLLFRNG 811
ERNV SK+SV +P+ LLFR G
Sbjct: 368 AERNVCSKYSVRGYPT-LLLFRGG 390
Score = 61.2 bits (147), Expect = 1e-09
Identities = 55/206 (26%), Positives = 90/206 (43%), Gaps = 20/206 (9%)
Frame = +2
Query: 254 SAWAVEFFASWCGHCIAFAPTWKALANDVKDWRPA-LNLAALDCAEETNNAVCREFDIPG 430
+A V FFA WCGHC PTW L + A + +A +DC +++ VC + G
Sbjct: 64 AAHFVMFFAPWCGHCQRLQPTWNDLGDKYNSMEDAKVYVAKVDCTADSD--VCSAQGVRG 121
Query: 431 FPTVRFFKAFSRTGSGATLPVAGADVQTLRERLIDAL-ETHSDTWPPACPPLEPARLEEI 607
+PT++FFK G A D +TL ++ L E + P A PP P + +
Sbjct: 122 YPTLKFFK----PGQEAVKYQGPRDFETLENWMLQTLNEEPATPEPEAEPPRAPELKQGL 177
Query: 608 TGFFARNSEEYLALIFEKEGSYL-----------------GREVALDLSQRQGIAVRRVL 736
A N E +++ +G++ ++AL L + + + +V
Sbjct: 178 YELSANNFELHVS-----QGNHFIKFFAPWCGHCKALAPTWEQLALGLEHSETVKIGKVD 232
Query: 737 NTERNVV-SKFSVTDFPSCYLLFRNG 811
T+ V S+ V +P+ L FR+G
Sbjct: 233 CTQHYAVCSEHQVRGYPT-LLWFRDG 257
Score = 58.9 bits (141), Expect = 5e-09
Identities = 25/69 (36%), Positives = 39/69 (56%)
Frame = +2
Query: 266 VEFFASWCGHCIAFAPTWKALANDVKDWRPALNLAALDCAEETNNAVCREFDIPGFPTVR 445
V+F+A WCGHC APTW+ L+ + +A +DC E N VC ++ + G+PT+
Sbjct: 328 VKFYAPWCGHCKNLAPTWEELSKKEFPGLSDVTIAEVDCTAERN--VCSKYSVRGYPTLL 385
Query: 446 FFKAFSRTG 472
F+ + G
Sbjct: 386 LFRGGEKVG 394
>ref|NP_031978.2| protein disulfide-isomerase A3 precursor [Mus musculus].
Length = 505
Score = 63.5 bits (153), Expect = 2e-10
Identities = 50/167 (29%), Positives = 73/167 (43%), Gaps = 1/167 (0%)
Frame = +2
Query: 182 LYSSSDPLTLLQAD-TVRGAVLGSRSAWAVEFFASWCGHCIAFAPTWKALANDVKDWRPA 358
L ++SD L L + R + GS VEFFA WCGHC AP ++A A +K P
Sbjct: 21 LAAASDVLELTDENFESRVSDTGSAGLMLVEFFAPWCGHCKRLAPEYEAAATRLKGIVP- 79
Query: 359 LNLAALDCAEETNNAVCREFDIPGFPTVRFFKAFSRTGSGATLPVAGADVQTLRERLIDA 538
LA +DC TN C ++ + G+PT++ F+ G+ A V L+++
Sbjct: 80 --LAKVDCTANTN--TCNKYGVSGYPTLKIFRDGEEAGAYDGPRTADGIVSHLKKQA--- 132
Query: 539 LETHSDTWPPACPPLEPARLEEITGFFARNSEEYLALIFEKEGSYLG 679
PA PL R EE+ I +K+ S +G
Sbjct: 133 --------GPASVPL-------------RTEEEFKKFISDKDASVVG 158
>ref|NP_035162.1| protein disulfide-isomerase precursor [Mus musculus].
Length = 509
Score = 60.1 bits (144), Expect = 2e-09
Identities = 40/120 (33%), Positives = 59/120 (49%), Gaps = 2/120 (1%)
Frame = +2
Query: 266 VEFFASWCGHCIAFAPTWKALANDVKDWRPALNLAALDCAEETNNAVCREFDIPGFPTVR 445
VEF+A WCGHC A AP + A +K + LA +D EE++ + +++ + G+PT++
Sbjct: 48 VEFYAPWCGHCKALAPEYAKAAAKLKAEGSEIRLAKVDATEESD--LAQQYGVRGYPTIK 105
Query: 446 FFKAFSRTGSGATLPVAGAD--VQTLRERLIDALETHSDTWPPACPPLEPARLEEITGFF 619
FFK AD V L++R A T SDT A L + + GFF
Sbjct: 106 FFKNGDTASPKEYTAGREADDIVNWLKKRTGPAATTLSDT--AAAESLVDSSEVTVIGFF 163
Score = 48.1 bits (113), Expect = 9e-06
Identities = 25/64 (39%), Positives = 32/64 (50%)
Frame = +2
Query: 266 VEFFASWCGHCIAFAPTWKALANDVKDWRPALNLAALDCAEETNNAVCREFDIPGFPTVR 445
VEF+A WCGHC AP W L KD + +A +D AV + FPT++
Sbjct: 392 VEFYAPWCGHCKQLAPIWDKLGETYKDHENII-IAKMDSTANEVEAV----KVHSFPTLK 446
Query: 446 FFKA 457
FF A
Sbjct: 447 FFPA 450
>ref|NP_033917.2| protein disulfide-isomerase A4 [Mus musculus].
Length = 641
Score = 59.3 bits (142), Expect = 4e-09
Identities = 50/191 (26%), Positives = 92/191 (48%), Gaps = 9/191 (4%)
Frame = +2
Query: 266 VEFFASWCGHCIAFAPTWKALANDVKDWRPALNLAALDCAEETNNAVCREFDIPGFPTVR 445
+EF+A WCGHC FAP ++ +A+ +KD P + +A +D + + + +FD+ G+PT++
Sbjct: 80 LEFYAPWCGHCKQFAPEYEKIASTLKDNDPPIAVAKIDAT--SASMLASKFDVSGYPTIK 137
Query: 446 FFKAFSRTGSGATLPVAGADVQTLRERLIDALETHSDTWPPACPPLEPARLEEITGFFAR 625
K G + G+ +T E + E W P PP L +
Sbjct: 138 ILK------KGQAVDYDGS--RTQEEIVAKVREVSQPDWTP--PPEVTLSLTKDNFDDVV 187
Query: 626 NSEEYLALIFE-------KEGSYLGREVALDLSQRQ-GIAVRRVLNTER-NVVSKFSVTD 778
N+ + + + F K+ + + A +LS+R I + +V TE+ ++ +F V+
Sbjct: 188 NNADIILVEFYAPWCGHCKKLAPEYEKAAKELSKRSPPIPLAKVDATEQTDLAKRFDVSG 247
Query: 779 FPSCYLLFRNG 811
+P+ +FR G
Sbjct: 248 YPT-LKIFRKG 257
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 28,195,375
Number of extensions: 764866
Number of successful extensions: 3347
Number of sequences better than 1.0e-05: 13
Number of HSP's gapped: 3301
Number of HSP's successfully gapped: 21
Length of query: 311
Length of database: 15,617,559
Length adjustment: 101
Effective length of query: 210
Effective length of database: 12,583,923
Effective search space: 2642623830
Effective search space used: 2642623830
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003970
(934 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_003357607.1| PREDICTED: sulfhydryl oxidase 1-like isoform... 487 e-138
Alignment gi|XP_003357606.1| PREDICTED: sulfhydryl oxidase 1-like isoform... 487 e-138
Alignment gi|XP_003354971.1| PREDICTED: potassium voltage-gated channel s... 70 2e-12
Alignment gi|NP_001182048.1| protein disulfide-isomerase A6 [Sus scrofa]. 69 3e-12
Alignment gi|NP_001182041.1| protein disulfide-isomerase A3 [Sus scrofa]. 62 3e-10
Alignment gi|XP_003128223.2| PREDICTED: thioredoxin domain-containing pro... 62 6e-10
Alignment gi|XP_003130326.1| PREDICTED: protein disulfide-isomerase A4-li... 58 7e-09
Alignment gi|XP_003356566.1| PREDICTED: thioredoxin domain-containing pro... 54 9e-08
Alignment gi|XP_003133574.2| PREDICTED: dnaJ homolog subfamily C member 1... 54 2e-07
Alignment gi|XP_003121742.2| PREDICTED: protein disulfide-isomerase TMX3 ... 52 6e-07
>ref|XP_003357607.1| PREDICTED: sulfhydryl oxidase 1-like isoform 2 [Sus scrofa].
Length = 741
Score = 487 bits (1254), Expect = e-138
Identities = 240/244 (98%), Positives = 242/244 (99%)
Frame = +2
Query: 173 RSALYSSSDPLTLLQADTVRGAVLGSRSAWAVEFFASWCGHCIAFAPTWKALANDVKDWR 352
RSALYSSSDPLTLLQADTVRGAVLGSRSAWAVEFFASWCGHCIAFAPTWKALANDVKDWR
Sbjct: 31 RSALYSSSDPLTLLQADTVRGAVLGSRSAWAVEFFASWCGHCIAFAPTWKALANDVKDWR 90
Query: 353 PALNLAALDCAEETNNAVCREFDIPGFPTVRFFKAFSRTGSGATLPVAGADVQTLRERLI 532
PALNLAALDCAEETNNAVCREFDIPGFPTVRFFKAFSRTGSGATLPVAGADVQTLRERLI
Sbjct: 91 PALNLAALDCAEETNNAVCREFDIPGFPTVRFFKAFSRTGSGATLPVAGADVQTLRERLI 150
Query: 533 DALETHSDTWPPACPPLEPARLEEITGFFARNSEEYLALIFEKEGSYLGREVALDLSQRQ 712
DALETHSDTWPPACPPLEPARLEEITGFFARNSEEYLALIFEKEGSYLGREVALDLSQRQ
Sbjct: 151 DALETHSDTWPPACPPLEPARLEEITGFFARNSEEYLALIFEKEGSYLGREVALDLSQRQ 210
Query: 713 GIAVRRVLNTERNVVSKFSVTDFPSCYLLFRNGSFLRVPVLMEFRSFYTAYLQKISGVIR 892
GIAVRRVLNTERNVVSKFSVTDFPSCYLLFRNGSF RVPVLME RSFYTAYLQ++SGVIR
Sbjct: 211 GIAVRRVLNTERNVVSKFSVTDFPSCYLLFRNGSFSRVPVLMESRSFYTAYLQRLSGVIR 270
Query: 893 KPVP 904
KPVP
Sbjct: 271 KPVP 274
>ref|XP_003357606.1| PREDICTED: sulfhydryl oxidase 1-like isoform 1 [Sus scrofa].
Length = 565
Score = 487 bits (1254), Expect = e-138
Identities = 240/244 (98%), Positives = 242/244 (99%)
Frame = +2
Query: 173 RSALYSSSDPLTLLQADTVRGAVLGSRSAWAVEFFASWCGHCIAFAPTWKALANDVKDWR 352
RSALYSSSDPLTLLQADTVRGAVLGSRSAWAVEFFASWCGHCIAFAPTWKALANDVKDWR
Sbjct: 31 RSALYSSSDPLTLLQADTVRGAVLGSRSAWAVEFFASWCGHCIAFAPTWKALANDVKDWR 90
Query: 353 PALNLAALDCAEETNNAVCREFDIPGFPTVRFFKAFSRTGSGATLPVAGADVQTLRERLI 532
PALNLAALDCAEETNNAVCREFDIPGFPTVRFFKAFSRTGSGATLPVAGADVQTLRERLI
Sbjct: 91 PALNLAALDCAEETNNAVCREFDIPGFPTVRFFKAFSRTGSGATLPVAGADVQTLRERLI 150
Query: 533 DALETHSDTWPPACPPLEPARLEEITGFFARNSEEYLALIFEKEGSYLGREVALDLSQRQ 712
DALETHSDTWPPACPPLEPARLEEITGFFARNSEEYLALIFEKEGSYLGREVALDLSQRQ
Sbjct: 151 DALETHSDTWPPACPPLEPARLEEITGFFARNSEEYLALIFEKEGSYLGREVALDLSQRQ 210
Query: 713 GIAVRRVLNTERNVVSKFSVTDFPSCYLLFRNGSFLRVPVLMEFRSFYTAYLQKISGVIR 892
GIAVRRVLNTERNVVSKFSVTDFPSCYLLFRNGSF RVPVLME RSFYTAYLQ++SGVIR
Sbjct: 211 GIAVRRVLNTERNVVSKFSVTDFPSCYLLFRNGSFSRVPVLMESRSFYTAYLQRLSGVIR 270
Query: 893 KPVP 904
KPVP
Sbjct: 271 KPVP 274
>ref|XP_003354971.1| PREDICTED: potassium voltage-gated channel subfamily F member
1-like [Sus scrofa].
Length = 651
Score = 70.1 bits (170), Expect = 2e-12
Identities = 39/122 (31%), Positives = 61/122 (50%), Gaps = 8/122 (6%)
Frame = +2
Query: 176 SALYSSSDPLTLLQADTVRGAVLGSRSAWAVEFFASWCGHCIAFAPTWKALANDVKDWRP 355
+ LYSSSD + L V+ S S W VEF+A WCGHC P WK +A +KD
Sbjct: 168 NGLYSSSDDVIELTPSNFNREVIQSDSLWLVEFYAPWCGHCQRLTPEWKKVATALKD--- 224
Query: 356 ALNLAALDCAEETNNAVCREFDIPGFPTVRFFKA--------FSRTGSGATLPVAGADVQ 511
+ + A+D + + ++ ++ + GFPT++ F + + GA+LP G Q
Sbjct: 225 VVKVGAVDA--DKHQSLGGQYGVQGFPTIKIFGSNKNRPEDYQGKAAPGASLPWRGFSFQ 282
Query: 512 TL 517
+
Sbjct: 283 QI 284
>ref|NP_001182048.1| protein disulfide-isomerase A6 [Sus scrofa].
Length = 440
Score = 69.3 bits (168), Expect = 3e-12
Identities = 49/143 (34%), Positives = 66/143 (46%), Gaps = 1/143 (0%)
Frame = +2
Query: 212 LQADTVRGAVLGSRSAWAVEFFASWCGHCIAFAPTWKALANDVKD-WRPALNLAALDCAE 388
L DT VL S W VEF+A WCGHC P W A A +VK+ + + LAA+D
Sbjct: 165 LTDDTFDKNVLDSEDVWMVEFYAPWCGHCKNLEPEWAAAATEVKEQTKGKVKLAAVDAT- 223
Query: 389 ETNNAVCREFDIPGFPTVRFFKAFSRTGSGATLPVAGADVQTLRERLIDALETHSDTWPP 568
N + + I GFPT++ F+ PV +T + + AL+ SD PP
Sbjct: 224 -VNQVLASRYGIRGFPTIKIFQK-------GESPVDYDGGRTRSDIVTRALDLFSDNAPP 275
Query: 569 ACPPLEPARLEEITGFFARNSEE 637
P LE I+ A+ S E
Sbjct: 276 ------PELLEIISEDVAKKSCE 292
Score = 68.2 bits (165), Expect = 6e-12
Identities = 33/92 (35%), Positives = 51/92 (55%)
Frame = +2
Query: 176 SALYSSSDPLTLLQADTVRGAVLGSRSAWAVEFFASWCGHCIAFAPTWKALANDVKDWRP 355
+ LYSSSD + L V+ S S W VEF+A WCGHC P WK +A +KD
Sbjct: 18 NGLYSSSDDVIELTPSNFNREVIQSDSLWLVEFYAPWCGHCQRLTPEWKKVATALKD--- 74
Query: 356 ALNLAALDCAEETNNAVCREFDIPGFPTVRFF 451
+ + A+D + + ++ ++ + GFPT++ F
Sbjct: 75 VVKVGAVDA--DKHQSLGGQYGVQGFPTIKIF 104
>ref|NP_001182041.1| protein disulfide-isomerase A3 [Sus scrofa].
Length = 505
Score = 62.4 bits (150), Expect = 3e-10
Identities = 44/145 (30%), Positives = 63/145 (43%)
Frame = +2
Query: 245 GSRSAWAVEFFASWCGHCIAFAPTWKALANDVKDWRPALNLAALDCAEETNNAVCREFDI 424
GS VEFFA WCGHC AP ++A A +K P LA +DC TN C ++ +
Sbjct: 43 GSAGLMLVEFFAPWCGHCKRLAPEYEAAATRLKGIVP---LAKVDCTANTN--TCNKYGV 97
Query: 425 PGFPTVRFFKAFSRTGSGATLPVAGADVQTLRERLIDALETHSDTWPPACPPLEPARLEE 604
G+PT++ F+ G+ A V L+++ PA PL
Sbjct: 98 SGYPTLKIFRDGEEAGAYDGPRTADGIVSHLKKQA-----------GPASVPL------- 139
Query: 605 ITGFFARNSEEYLALIFEKEGSYLG 679
R EE+ I +K+ S +G
Sbjct: 140 ------RTEEEFEKFISDKDASVVG 158
Score = 47.8 bits (112), Expect = 9e-06
Identities = 27/90 (30%), Positives = 44/90 (48%)
Frame = +2
Query: 188 SSSDPLTLLQADTVRGAVLGSRSAWAVEFFASWCGHCIAFAPTWKALANDVKDWRPALNL 367
S+ P+ ++ A+ V +EF+A WCGHC P +K L ++ P + +
Sbjct: 373 SNDGPVKVVVAENFDEIVNDENKDVLIEFYAPWCGHCKNLEPKYKELGEKLRK-DPNIII 431
Query: 368 AALDCAEETNNAVCREFDIPGFPTVRFFKA 457
A +D T N V +++ GFPT+ F A
Sbjct: 432 AKMDA---TANDVPSPYEVRGFPTIYFSPA 458
>ref|XP_003128223.2| PREDICTED: thioredoxin domain-containing protein 5-like [Sus
scrofa].
Length = 315
Score = 61.6 bits (148), Expect = 6e-10
Identities = 60/217 (27%), Positives = 99/217 (45%), Gaps = 25/217 (11%)
Frame = +2
Query: 236 AVLGSRSAWA-------VEFFASWCGHCIAFAPTWKALANDVKDWRPALNLAALDCAEET 394
A+ G AW+ ++FFA WCGHC A APTW+ LA + + + + +DC +
Sbjct: 80 ALYGRSKAWSRNEGDHFIKFFAPWCGHCKALAPTWEQLALGL-EHSATVKIGKVDCTQ-- 136
Query: 395 NNAVCREFDIPGFPTVRFFKAFSRTGSGATLPVAGADVQTLRERLIDALETHSDTWPPAC 574
+ +C + G+PT+ +F R G D+ +LRE + L++ P
Sbjct: 137 HYELCSGNQVRGYPTLLWF----RDGKKVDQYKGKRDLDSLREYVQAQLQSAGPGTPETA 192
Query: 575 PPLE-PA-----RLEEITGFFAR-----NSEEYLALIFEKEGSYLG-REVALDLSQRQ-- 712
P E PA E+ T + R ++E A ++ G + LS+++
Sbjct: 193 QPSEAPAPATEPAAEQPTPSYPRGAVQPGADEVRAHTRDECGHCKNLAPIWEQLSRKEFP 252
Query: 713 ---GIAVRRV-LNTERNVVSKFSVTDFPSCYLLFRNG 811
G+ + V ER++ SK+SV +P+ LLFR G
Sbjct: 253 GLAGVKIAEVDCTAERDLCSKYSVRGYPT-LLLFRGG 288
>ref|XP_003130326.1| PREDICTED: protein disulfide-isomerase A4-like [Sus scrofa].
Length = 646
Score = 58.2 bits (139), Expect = 7e-09
Identities = 32/105 (30%), Positives = 52/105 (49%)
Frame = +2
Query: 266 VEFFASWCGHCIAFAPTWKALANDVKDWRPALNLAALDCAEETNNAVCREFDIPGFPTVR 445
+EF+A WCGHC FAP ++ +A +K+ P + +A +D E+ + FD+ G+PT++
Sbjct: 85 LEFYAPWCGHCKQFAPEYEKIATTLKENDPPIPVAKIDATSESE--LASRFDVSGYPTIK 142
Query: 446 FFKAFSRTGSGATLPVAGADVQTLRERLIDALETHSDTWPPACPP 580
K G + G+ +T E + E W P PP
Sbjct: 143 ILK------KGQAVDYEGS--RTQEEIVAKVKEISQPNWIP--PP 177
Score = 58.2 bits (139), Expect = 7e-09
Identities = 24/63 (38%), Positives = 39/63 (61%)
Frame = +2
Query: 266 VEFFASWCGHCIAFAPTWKALANDVKDWRPALNLAALDCAEETNNAVCREFDIPGFPTVR 445
VEF+A WCGHC AP ++ A ++ P + LA +D ET+ + + FD+ G+PT++
Sbjct: 200 VEFYAPWCGHCKKLAPEYERAAKELSKRSPPIPLAKVDATAETD--LAKRFDVSGYPTLK 257
Query: 446 FFK 454
F+
Sbjct: 258 IFR 260
>ref|XP_003356566.1| PREDICTED: thioredoxin domain-containing protein 5-like [Sus
scrofa].
Length = 204
Score = 54.3 bits (129), Expect = 9e-08
Identities = 24/84 (28%), Positives = 44/84 (52%)
Frame = +2
Query: 266 VEFFASWCGHCIAFAPTWKALANDVKDWRPALNLAALDCAEETNNAVCREFDIPGFPTVR 445
++F+A WCGHC AP W+ L+ + +A +DC E + +C ++ + G+PT+
Sbjct: 115 IKFYAPWCGHCKNLAPIWEQLSRKEFPGLAGVKIAEVDCTAERD--LCSKYSVRGYPTLL 172
Query: 446 FFKAFSRTGSGATLPVAGADVQTL 517
F+ + G + G D+ +L
Sbjct: 173 LFRGGKKVGEHS----GGRDLDSL 192
>ref|XP_003133574.2| PREDICTED: dnaJ homolog subfamily C member 10, partial [Sus
scrofa].
Length = 653
Score = 53.5 bits (127), Expect = 2e-07
Identities = 28/80 (35%), Positives = 42/80 (52%)
Frame = +2
Query: 212 LQADTVRGAVLGSRSAWAVEFFASWCGHCIAFAPTWKALANDVKDWRPALNLAALDCAEE 391
L T VL +S W V+F+A WCG C FAP ++ LA VK+ + +DC +
Sbjct: 535 LTPQTFNEKVLQGKSHWVVDFYAPWCGPCQNFAPEFELLARMVKE---KVKAGKVDC--Q 589
Query: 392 TNNAVCREFDIPGFPTVRFF 451
C++ I +PTV+F+
Sbjct: 590 AYAQTCQKAGIRAYPTVKFY 609
Score = 47.8 bits (112), Expect = 9e-06
Identities = 22/74 (29%), Positives = 39/74 (52%)
Frame = +2
Query: 236 AVLGSRSAWAVEFFASWCGHCIAFAPTWKALANDVKDWRPALNLAALDCAEETNNAVCRE 415
A + S W V F++S C HC APTW+ A +V L + A++C ++ +CR
Sbjct: 1 AAVNSGELWFVNFYSSGCSHCHDLAPTWRDFAREVDG---LLRIGAVNCGDD--RMLCRM 55
Query: 416 FDIPGFPTVRFFKA 457
+ +P++ F++
Sbjct: 56 KGVSSYPSLFIFRS 69
>ref|XP_003121742.2| PREDICTED: protein disulfide-isomerase TMX3 [Sus scrofa].
Length = 444
Score = 51.6 bits (122), Expect = 6e-07
Identities = 19/65 (29%), Positives = 35/65 (53%)
Frame = +2
Query: 260 WAVEFFASWCGHCIAFAPTWKALANDVKDWRPALNLAALDCAEETNNAVCREFDIPGFPT 439
W V+F+A WCGHC P W + ++K + + +D + +++ EF + G+PT
Sbjct: 34 WLVDFYAPWCGHCKKLEPIWNEVGLEMKSIGSPVKVGKMDAT--SYSSIASEFGVRGYPT 91
Query: 440 VRFFK 454
++ K
Sbjct: 92 IKLLK 96
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 21,557,713
Number of extensions: 648933
Number of successful extensions: 3008
Number of sequences better than 1.0e-05: 11
Number of HSP's gapped: 2974
Number of HSP's successfully gapped: 15
Length of query: 311
Length of database: 11,343,932
Length adjustment: 99
Effective length of query: 212
Effective length of database: 8,879,129
Effective search space: 1882375348
Effective search space used: 1882375348
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 33 (17.3 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003970
(934 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr09 392 e-106
>Sscrofa_Chr09
|| Length = 153670197
Score = 392 bits (198), Expect = e-106
Identities = 198/198 (100%)
Strand = Plus / Plus
Query: 147 cggtgcccggcgctggcgcggccccgcgctcggctctctactcgtcctctgacccgctga 206
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 133595814 cggtgcccggcgctggcgcggccccgcgctcggctctctactcgtcctctgacccgctga 133595873
Query: 207 cgctgctgcaagcggacacggtgcgcggcgccgtgctgggctcccgcagcgcctgggcgg 266
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 133595874 cgctgctgcaagcggacacggtgcgcggcgccgtgctgggctcccgcagcgcctgggcgg 133595933
Query: 267 tggagttcttcgcctcctggtgcggccactgcatcgccttcgcccctacgtggaaggcgc 326
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 133595934 tggagttcttcgcctcctggtgcggccactgcatcgccttcgcccctacgtggaaggcgc 133595993
Query: 327 tggccaacgacgtcaaag 344
||||||||||||||||||
Sbjct: 133595994 tggccaacgacgtcaaag 133596011
Score = 264 bits (133), Expect = 8e-68
Identities = 145/149 (97%)
Strand = Plus / Plus
Query: 684 aggtggctctggacctgtcccagcgccagggcatagcagtgcgcagggtcctgaacacag 743
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 133621225 aggtggctctggacctgtcccagcgccagggcatagcagtgcgcagggtcctgaacacag 133621284
Query: 744 agcgcaacgtggtgagcaagttcagtgtcaccgactttccatcttgctacctgctgtttc 803
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 133621285 agcgcaacgtggtgagcaagttcagtgtcaccgacttcccatcttgctacctgctgtttc 133621344
Query: 804 ggaacggctcttttctccgggtccccgtg 832
||||||||||||| |||||||||||||
Sbjct: 133621345 ggaacggctctttctcccgggtccccgtg 133621373
Score = 210 bits (106), Expect = 1e-51
Identities = 106/106 (100%)
Strand = Plus / Plus
Query: 1 gacggaggcaggaggtgccgccgagcagctgggcaccaactcgtctgaaacttgcgagca 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 133595668 gacggaggcaggaggtgccgccgagcagctgggcaccaactcgtctgaaacttgcgagca 133595727
Query: 61 gtggtgggcgaagtcaccgaggatggggtcgtgcggccgcggctcc 106
||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 133595728 gtggtgggcgaagtcaccgaggatggggtcgtgcggccgcggctcc 133595773
Score = 204 bits (103), Expect = 6e-50
Identities = 103/103 (100%)
Strand = Plus / Plus
Query: 343 agactggagaccggcgctgaatctcgctgccctggactgtgctgaggagaccaacaacgc 402
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 133605299 agactggagaccggcgctgaatctcgctgccctggactgtgctgaggagaccaacaacgc 133605358
Query: 403 agtctgcagagaatttgacatccctggcttcccgactgtgagg 445
|||||||||||||||||||||||||||||||||||||||||||
Sbjct: 133605359 agtctgcagagaatttgacatccctggcttcccgactgtgagg 133605401
Score = 192 bits (97), Expect = 2e-46
Identities = 97/97 (100%)
Strand = Plus / Plus
Query: 592 caggttggaggagattactggattctttgcaagaaacagtgaagagtacctggccctgat 651
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 133618750 caggttggaggagattactggattctttgcaagaaacagtgaagagtacctggccctgat 133618809
Query: 652 ctttgaaaaggaaggctcctacctgggtagggaggtg 688
|||||||||||||||||||||||||||||||||||||
Sbjct: 133618810 ctttgaaaaggaaggctcctacctgggtagggaggtg 133618846
Score = 147 bits (74), Expect = 1e-32
Identities = 74/74 (100%)
Strand = Plus / Plus
Query: 489 cagtggctggtgccgatgtgcagacgctgcgggaaaggctcattgatgccctcgagaccc 548
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 133615552 cagtggctggtgccgatgtgcagacgctgcgggaaaggctcattgatgccctcgagaccc 133615611
Query: 549 acagtgacacgtgg 562
||||||||||||||
Sbjct: 133615612 acagtgacacgtgg 133615625
Score = 141 bits (71), Expect = 8e-31
Identities = 95/103 (92%)
Strand = Plus / Plus
Query: 832 gcttatggaattcaggtccttctacaccgcttacctgcagaagatatccggggtcatcag 891
||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 133623361 gcttatggaatccaggtccttctacaccgcttacctgcagagattatccggggtcatcag 133623420
Query: 892 gaaacctgtcccgacaacgactgtgcaaaccaacacccgcacg 934
||| ||||||||||| |||||||||| ||||| ||||||||||
Sbjct: 133623421 gaagcctgtcccgaccacgactgtgccaaccaccacccgcacg 133623463
Score = 93.7 bits (47), Expect = 2e-16
Identities = 47/47 (100%)
Strand = Plus / Plus
Query: 445 gttctttaaggccttttccaggaccggctcaggagctaccctgccag 491
|||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 133614984 gttctttaaggccttttccaggaccggctcaggagctaccctgccag 133615030
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 18,686,908
Number of extensions: 85
Number of successful extensions: 85
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 85
Number of HSP's successfully gapped: 8
Length of query: 934
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 913
Effective length of database: 2,808,413,156
Effective search space: 2564081211428
Effective search space used: 2564081211428
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 29 (58.0 bits)