Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003998
(1069 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001068720.1| myeloid-associated differentiation marker [B... 505 e-143
Alignment gi|XP_002696601.1| PREDICTED: myeloid-associated differentiatio... 384 e-107
Alignment gi|XP_002702668.1| PREDICTED: myeloid-associated differentiatio... 384 e-107
Alignment gi|XP_002696624.1| PREDICTED: myeloid-associated differentiatio... 348 5e-96
Alignment gi|XP_589598.2| PREDICTED: myeloid-associated differentiation m... 348 5e-96
Alignment gi|XP_002696608.1| PREDICTED: myeloid-associated differentiatio... 325 5e-89
Alignment gi|XP_002696603.1| PREDICTED: myeloid-associated differentiatio... 325 5e-89
Alignment gi|XP_593119.3| PREDICTED: myeloid-associated differentiation m... 322 5e-88
Alignment gi|NP_001093792.1| hypothetical protein LOC508153 [Bos taurus]. 320 1e-87
Alignment gi|NP_001098445.1| hypothetical protein LOC512150 [Bos taurus]. 320 1e-87
>ref|NP_001068720.1| myeloid-associated differentiation marker [Bos taurus].
Length = 322
Score = 505 bits (1301), Expect = e-143
Identities = 241/262 (91%), Positives = 249/262 (95%)
Frame = +1
Query: 283 ISTCVAFSLVASVGAWTGAMGNWSMFTWCFCFAVTLIILIVELAGLQARFPLSWRNFPIT 462
+STCVAFSLVASVGAWTG MGNWSMFTWCFCF+VTLIILIVEL GLQ RFPLSWRNFPIT
Sbjct: 45 VSTCVAFSLVASVGAWTGPMGNWSMFTWCFCFSVTLIILIVELCGLQVRFPLSWRNFPIT 104
Query: 463 YACYAALFCLSASVIYPTTYVQFLSHGRSRDHAIAATAFSCIACVAYATEVAWTRARPGE 642
YACYAALFCLS+S+IYPTTYVQFLSHGRSRDHAIAATAFSCIACVAYATEVAWTRARPGE
Sbjct: 105 YACYAALFCLSSSIIYPTTYVQFLSHGRSRDHAIAATAFSCIACVAYATEVAWTRARPGE 164
Query: 643 ITGYMATVPGLLKVLETFVACVIFAFISNPNLYQHQPALEWCVAVYSICFILAAVAILLN 822
ITGYMATVPGLLKVLETFVAC+IFAFIS+P LYQHQ ALEWCVAVYSICFILAAVAILLN
Sbjct: 165 ITGYMATVPGLLKVLETFVACIIFAFISDPGLYQHQSALEWCVAVYSICFILAAVAILLN 224
Query: 823 LGDCTNVLPIAFPTFLSGLALISVLFYATALVLWPLYQFDQKYGGHPRRSMDPGCGDRHT 1002
LGDCTNVLPIAFPTFLSGLALISVL YATALVLWPLYQFDQK+GG PRR MDPGC RH
Sbjct: 225 LGDCTNVLPIAFPTFLSGLALISVLLYATALVLWPLYQFDQKHGGEPRRQMDPGCSRRHV 284
Query: 1003 YYVCPWDRRLAVAILTAINLLA 1068
+YVC WDRRLAVAILT INLLA
Sbjct: 285 HYVCSWDRRLAVAILTGINLLA 306
>ref|XP_002696601.1| PREDICTED: myeloid-associated differentiation marker-like [Bos
taurus].
Length = 317
Score = 384 bits (986), Expect = e-107
Identities = 188/263 (71%), Positives = 213/263 (80%), Gaps = 2/263 (0%)
Frame = +1
Query: 283 ISTCVAFSLVASVGAWTGAMGNWSMFTWCFCFAVTLIILIVELAGLQARFPLSWRNFPIT 462
+STC+AFSLVASVG W GA+ NWS+F WCFCF VTLIILI+E GLQ+RFP SW NF IT
Sbjct: 26 LSTCLAFSLVASVGTWMGAVSNWSVFIWCFCFLVTLIILIIEFCGLQSRFPFSWYNFLIT 85
Query: 463 YACYAALFCLSASVIYPTTYVQFLSHGRSRDHAIAATAFSCIACVAYATEVAWTRARP-- 636
YACYAAL C+SAS++YP TY+ F HGRS+DHAIAATAFSCIA VAYA+EVAW R
Sbjct: 86 YACYAALLCISASIVYPITYIWFFPHGRSQDHAIAATAFSCIASVAYASEVAWARTWVWL 145
Query: 637 GEITGYMATVPGLLKVLETFVACVIFAFISNPNLYQHQPALEWCVAVYSICFILAAVAIL 816
G ITGYM TVPGLLK LETFVA VIFAFI + +LY HQPAL WCVAVYSICF+LAA A+L
Sbjct: 146 GVITGYMVTVPGLLKGLETFVAGVIFAFIIDSHLYMHQPALVWCVAVYSICFLLAASALL 205
Query: 817 LNLGDCTNVLPIAFPTFLSGLALISVLFYATALVLWPLYQFDQKYGGHPRRSMDPGCGDR 996
LN DC N LPIAFPTFL GL L+SVL Y +ALVLWPLYQFD+++GG P+RS C D
Sbjct: 206 LNWCDCDNRLPIAFPTFLLGLTLLSVLLYTSALVLWPLYQFDEQFGGQPKRS---SCNDG 262
Query: 997 HTYYVCPWDRRLAVAILTAINLL 1065
Y +C WD++LAVAILTAINLL
Sbjct: 263 LIYSLCTWDQQLAVAILTAINLL 285
>ref|XP_002702668.1| PREDICTED: myeloid-associated differentiation marker-like [Bos
taurus].
Length = 317
Score = 384 bits (986), Expect = e-107
Identities = 188/263 (71%), Positives = 213/263 (80%), Gaps = 2/263 (0%)
Frame = +1
Query: 283 ISTCVAFSLVASVGAWTGAMGNWSMFTWCFCFAVTLIILIVELAGLQARFPLSWRNFPIT 462
+STC+AFSLVASVG W GA+ NWS+F WCFCF VTLIILI+E GLQ+RFP SW NF IT
Sbjct: 26 LSTCLAFSLVASVGTWMGAVSNWSVFIWCFCFLVTLIILIIEFCGLQSRFPFSWYNFLIT 85
Query: 463 YACYAALFCLSASVIYPTTYVQFLSHGRSRDHAIAATAFSCIACVAYATEVAWTRARP-- 636
YACYAAL C+SAS++YP TY+ F HGRS+DHAIAATAFSCIA VAYA+EVAW R
Sbjct: 86 YACYAALLCISASIVYPITYIWFFPHGRSQDHAIAATAFSCIASVAYASEVAWARTWVWL 145
Query: 637 GEITGYMATVPGLLKVLETFVACVIFAFISNPNLYQHQPALEWCVAVYSICFILAAVAIL 816
G ITGYM TVPGLLK LETFVA VIFAFI + +LY HQPAL WCVAVYSICF+LAA A+L
Sbjct: 146 GVITGYMVTVPGLLKGLETFVAGVIFAFIIDSHLYMHQPALVWCVAVYSICFLLAASALL 205
Query: 817 LNLGDCTNVLPIAFPTFLSGLALISVLFYATALVLWPLYQFDQKYGGHPRRSMDPGCGDR 996
LN DC N LPIAFPTFL GL L+SVL Y +ALVLWPLYQFD+++GG P+RS C D
Sbjct: 206 LNWCDCDNRLPIAFPTFLLGLTLLSVLLYTSALVLWPLYQFDEQFGGQPKRS---SCNDG 262
Query: 997 HTYYVCPWDRRLAVAILTAINLL 1065
Y +C WD++LAVAILTAINLL
Sbjct: 263 LIYSLCTWDQQLAVAILTAINLL 285
>ref|XP_002696624.1| PREDICTED: myeloid-associated differentiation marker-like [Bos
taurus].
Length = 288
Score = 348 bits (893), Expect = 5e-96
Identities = 170/260 (65%), Positives = 196/260 (75%)
Frame = +1
Query: 286 STCVAFSLVASVGAWTGAMGNWSMFTWCFCFAVTLIILIVELAGLQARFPLSWRNFPITY 465
STC+AFSL ASVG W GA+GNWSMF WCFCF +TL+ILIVEL GL+ FP SW NF IT
Sbjct: 12 STCMAFSLGASVGTWKGAIGNWSMFIWCFCFVLTLLILIVELCGLEGHFPFSWDNFLITC 71
Query: 466 ACYAALFCLSASVIYPTTYVQFLSHGRSRDHAIAATAFSCIACVAYATEVAWTRARPGEI 645
CY+AL CLSAS+IYP Y+QF S+ D I +TAFSCIA VAYA +V WTRA+P I
Sbjct: 72 NCYSALLCLSASIIYPIIYIQFFSNSHDWDRTIISTAFSCIAFVAYAMDVTWTRAQPNMI 131
Query: 646 TGYMATVPGLLKVLETFVACVIFAFISNPNLYQHQPALEWCVAVYSICFILAAVAILLNL 825
TGYMATVPGLLK LET VACVIF F+SN +LY HQPALEWCVAVYSICF+L++VAILLNL
Sbjct: 132 TGYMATVPGLLKGLETVVACVIFVFLSNTSLYLHQPALEWCVAVYSICFVLSSVAILLNL 191
Query: 826 GDCTNVLPIAFPTFLSGLALISVLFYATALVLWPLYQFDQKYGGHPRRSMDPGCGDRHTY 1005
G C + I F F L L+SVL Y TAL+LWPLYQF+++ G +RS D C R
Sbjct: 192 GKCDSRPSIPFSVFQVVLTLLSVLLYTTALLLWPLYQFNEELGRQLQRSSDVNCSSRIPT 251
Query: 1006 YVCPWDRRLAVAILTAINLL 1065
VC WD++LAV LTAINLL
Sbjct: 252 SVCIWDQQLAVVSLTAINLL 271
>ref|XP_589598.2| PREDICTED: myeloid-associated differentiation marker-like [Bos
taurus].
Length = 288
Score = 348 bits (893), Expect = 5e-96
Identities = 170/260 (65%), Positives = 196/260 (75%)
Frame = +1
Query: 286 STCVAFSLVASVGAWTGAMGNWSMFTWCFCFAVTLIILIVELAGLQARFPLSWRNFPITY 465
STC+AFSL ASVG W GA+GNWSMF WCFCF +TL+ILIVEL GL+ FP SW NF IT
Sbjct: 12 STCMAFSLGASVGTWKGAIGNWSMFIWCFCFVLTLLILIVELCGLEGHFPFSWDNFLITC 71
Query: 466 ACYAALFCLSASVIYPTTYVQFLSHGRSRDHAIAATAFSCIACVAYATEVAWTRARPGEI 645
CY+AL CLSAS+IYP Y+QF S+ D I +TAFSCIA VAYA +V WTRA+P I
Sbjct: 72 NCYSALLCLSASIIYPIIYIQFFSNSHDWDRTIISTAFSCIAFVAYAMDVTWTRAQPNMI 131
Query: 646 TGYMATVPGLLKVLETFVACVIFAFISNPNLYQHQPALEWCVAVYSICFILAAVAILLNL 825
TGYMATVPGLLK LET VACVIF F+SN +LY HQPALEWCVAVYSICF+L++VAILLNL
Sbjct: 132 TGYMATVPGLLKGLETVVACVIFVFLSNTSLYLHQPALEWCVAVYSICFVLSSVAILLNL 191
Query: 826 GDCTNVLPIAFPTFLSGLALISVLFYATALVLWPLYQFDQKYGGHPRRSMDPGCGDRHTY 1005
G C + I F F L L+SVL Y TAL+LWPLYQF+++ G +RS D C R
Sbjct: 192 GKCDSRPSIPFSVFQVVLTLLSVLLYTTALLLWPLYQFNEELGRQLQRSSDVNCSSRIPT 251
Query: 1006 YVCPWDRRLAVAILTAINLL 1065
VC WD++LAV LTAINLL
Sbjct: 252 SVCIWDQQLAVVSLTAINLL 271
>ref|XP_002696608.1| PREDICTED: myeloid-associated differentiation marker-like [Bos
taurus].
Length = 313
Score = 325 bits (832), Expect = 5e-89
Identities = 159/261 (60%), Positives = 192/261 (73%)
Frame = +1
Query: 283 ISTCVAFSLVASVGAWTGAMGNWSMFTWCFCFAVTLIILIVELAGLQARFPLSWRNFPIT 462
+STCVAFSLVA V A GNWS+F WCFCF +TLIILIVEL GLQ R LSW F IT
Sbjct: 11 LSTCVAFSLVAGVSTLQVAAGNWSIFVWCFCFIMTLIILIVELCGLQPRLHLSWDGFLIT 70
Query: 463 YACYAALFCLSASVIYPTTYVQFLSHGRSRDHAIAATAFSCIACVAYATEVAWTRARPGE 642
A A CLS S+++ T +Q L H DHAIA TAFS +A VAYATEV WT AR GE
Sbjct: 71 SASCATFLCLSGSIVFATACIQLLPHSPFGDHAIAVTAFSSLASVAYATEVVWTCARSGE 130
Query: 643 ITGYMATVPGLLKVLETFVACVIFAFISNPNLYQHQPALEWCVAVYSICFILAAVAILLN 822
+ + T+PGLL LE FVAC+IFAFIS+P+LY HQPALEWCVAVYS+CF+L+AV +LLN
Sbjct: 131 FSCSVLTLPGLLHRLEIFVACIIFAFISSPHLYVHQPALEWCVAVYSLCFLLSAVTLLLN 190
Query: 823 LGDCTNVLPIAFPTFLSGLALISVLFYATALVLWPLYQFDQKYGGHPRRSMDPGCGDRHT 1002
+ N LP+ P GL L+S L YA+A+VLWPLYQF++++GG P+RS D C D+ +
Sbjct: 191 WYNWDNRLPVPVPLVHLGLTLLSTLLYASAVVLWPLYQFNREFGGQPQRSSDVSCRDKLS 250
Query: 1003 YYVCPWDRRLAVAILTAINLL 1065
YVC WD+RLAVA+LTA+NLL
Sbjct: 251 SYVCTWDQRLAVAVLTAVNLL 271
>ref|XP_002696603.1| PREDICTED: myeloid-associated differentiation marker-like [Bos
taurus].
Length = 321
Score = 325 bits (832), Expect = 5e-89
Identities = 163/263 (61%), Positives = 188/263 (71%), Gaps = 2/263 (0%)
Frame = +1
Query: 283 ISTCVAFSLVASVGAWTGAMGNWSMFTWCFCFAVTLIILIVELAGLQARFPLSWRNFPIT 462
+ST VA SLVASVG + NW MF WCFC+ VTL+I+IVE + L++ F W NFPI
Sbjct: 26 LSTGVASSLVASVGTQRVGVDNWFMFFWCFCYVVTLLIIIVEYSNLRSHFSSHWYNFPIN 85
Query: 463 YACYAALFCLSASVIYPTTYVQFLSHGRSRDHAIAATAFSCIACVAYATEVA--WTRARP 636
YACYAALFC S S+I TTYV FL G +R+HAI ATAFSCIA VAY TE W RP
Sbjct: 86 YACYAALFCFSTSIISATTYVPFLPQGPTRNHAITATAFSCIAAVAYGTEFVGTWVGHRP 145
Query: 637 GEITGYMATVPGLLKVLETFVACVIFAFISNPNLYQHQPALEWCVAVYSICFILAAVAIL 816
I Y+ T+ GLLK+LE FVAC+IFAFISN +LYQHQPAL WCVAVYS CFIL +AIL
Sbjct: 146 RRIITYVHTLHGLLKLLENFVACIIFAFISNTSLYQHQPALVWCVAVYSTCFILGTLAIL 205
Query: 817 LNLGDCTNVLPIAFPTFLSGLALISVLFYATALVLWPLYQFDQKYGGHPRRSMDPGCGDR 996
L L C N LPI FP GL L +L Y +ALVLWPLYQF+++ GG +RS D C D
Sbjct: 206 LGLLYCDNWLPIRFPVSQLGLTLFCILLYISALVLWPLYQFNEELGGQSQRSSDTTCRDE 265
Query: 997 HTYYVCPWDRRLAVAILTAINLL 1065
T YVC WD+RLAVA+LTAINLL
Sbjct: 266 FTTYVCNWDQRLAVAVLTAINLL 288
>ref|XP_593119.3| PREDICTED: myeloid-associated differentiation marker-like [Bos
taurus].
Length = 338
Score = 322 bits (824), Expect = 5e-88
Identities = 157/261 (60%), Positives = 190/261 (72%)
Frame = +1
Query: 283 ISTCVAFSLVASVGAWTGAMGNWSMFTWCFCFAVTLIILIVELAGLQARFPLSWRNFPIT 462
+STCVAFSLVA A GNWS+F WCFCF +TLIILIVEL GLQ R LSW F IT
Sbjct: 36 LSTCVAFSLVAGASTLQVAAGNWSIFVWCFCFIMTLIILIVELCGLQPRLHLSWDGFLIT 95
Query: 463 YACYAALFCLSASVIYPTTYVQFLSHGRSRDHAIAATAFSCIACVAYATEVAWTRARPGE 642
A A CLS S+++ T +Q L H DHAI TAFS +A VAYATEV WT AR GE
Sbjct: 96 SASCATFLCLSGSIVFATACIQLLPHSPFGDHAIVVTAFSSLASVAYATEVVWTCARSGE 155
Query: 643 ITGYMATVPGLLKVLETFVACVIFAFISNPNLYQHQPALEWCVAVYSICFILAAVAILLN 822
+ + T+PGLL LE FVAC+IFAFIS+P+LY HQPALEWCVAVYS+CF+L+AV +LLN
Sbjct: 156 FSCSVLTLPGLLHRLEIFVACIIFAFISSPHLYVHQPALEWCVAVYSLCFLLSAVTLLLN 215
Query: 823 LGDCTNVLPIAFPTFLSGLALISVLFYATALVLWPLYQFDQKYGGHPRRSMDPGCGDRHT 1002
+ N LP+ P GL L+S L YA+A+VLWPLYQF++++GG P+RS D C D+ +
Sbjct: 216 WYNWDNRLPVPVPLVHLGLTLLSTLLYASAVVLWPLYQFNREFGGQPQRSSDVSCRDKLS 275
Query: 1003 YYVCPWDRRLAVAILTAINLL 1065
YVC WD+RLAVA+LTA+NLL
Sbjct: 276 SYVCTWDQRLAVAVLTAVNLL 296
>ref|NP_001093792.1| hypothetical protein LOC508153 [Bos taurus].
Length = 299
Score = 320 bits (821), Expect = 1e-87
Identities = 168/262 (64%), Positives = 190/262 (72%), Gaps = 2/262 (0%)
Frame = +1
Query: 286 STCVAFSLVASVGAWTGAMGNWSMFTWCFCFAVTLIILIVELAGLQARFPLSWRNFPITY 465
STCVAFSLVA +G W G +GNW M WC CF VTL I+I+EL LQ RFP W NFP+T+
Sbjct: 27 STCVAFSLVADMGIWRGDIGNWFMSFWCICFIVTLFIVIIELNDLQPRFPFYWYNFPVTF 86
Query: 466 ACYAALFCLSASVIYPTTYVQFLSHGRSRDHAIAATAFSCIACVAYATEVA--WTRARPG 639
ACYAAL CLSAS+IY YVQFL G D A+AATAFSCIA V YA E+A W +
Sbjct: 87 ACYAALICLSASIIYSIAYVQFLPDGPEWDRAVAATAFSCIASVLYAIEMAGVWNFYKLK 146
Query: 640 EITGYMATVPGLLKVLETFVACVIFAFISNPNLYQHQPALEWCVAVYSICFILAAVAILL 819
EI Y+ TVPGLL VLETFVA VIFAF+SN +LY HQPALE CVAVYSICFI AAV ILL
Sbjct: 147 EIPCYVHTVPGLLNVLETFVAGVIFAFLSNTSLYLHQPALECCVAVYSICFIPAAVTILL 206
Query: 820 NLGDCTNVLPIAFPTFLSGLALISVLFYATALVLWPLYQFDQKYGGHPRRSMDPGCGDRH 999
NLG+ N LPI FP F L + SVL Y +ALVLW LYQF ++ GG P+RS D C D
Sbjct: 207 NLGEWENRLPIPFPIFQLVLTVFSVLLYISALVLWLLYQFYEELGGLPQRSSDVSCIDD- 265
Query: 1000 TYYVCPWDRRLAVAILTAINLL 1065
+C WD+RLAVA+LTAINLL
Sbjct: 266 --LMCAWDQRLAVAVLTAINLL 285
>ref|NP_001098445.1| hypothetical protein LOC512150 [Bos taurus].
Length = 323
Score = 320 bits (820), Expect = 1e-87
Identities = 164/262 (62%), Positives = 190/262 (72%), Gaps = 2/262 (0%)
Frame = +1
Query: 286 STCVAFSLVASVGAWTGAMGNWSMFTWCFCFAVTLIILIVELAGLQARFPLSWRNFPITY 465
STCVAFSLVA +G GA+GNWSM WC CFA+T II +VE + FP W N +TY
Sbjct: 27 STCVAFSLVADMGFQRGAIGNWSMSFWCVCFAMTFIITVVEYCRHPSSFPFFWYNISVTY 86
Query: 466 ACYAALFCLSASVIYPTTYVQFLSHGRSRDHAIAATAFSCIACVAYATEVA--WTRARPG 639
CYAAL CLSAS+IY TYVQF+ +G RD AIAATAFSCIA V Y EVA W +
Sbjct: 87 TCYAALICLSASIIYSITYVQFVPYGPYRDRAIAATAFSCIASVLYVIEVAIIWDCYKLK 146
Query: 640 EITGYMATVPGLLKVLETFVACVIFAFISNPNLYQHQPALEWCVAVYSICFILAAVAILL 819
EI Y+ T LLKVLETFVA VIFAF+SN +LY HQPALEWCVAVYSICFILAAV +LL
Sbjct: 147 EIFFYVHTTRSLLKVLETFVAGVIFAFLSNTSLYLHQPALEWCVAVYSICFILAAVVLLL 206
Query: 820 NLGDCTNVLPIAFPTFLSGLALISVLFYATALVLWPLYQFDQKYGGHPRRSMDPGCGDRH 999
L + + P AF F L+L+SVLFY +ALVLWPLYQF ++ GGHP+RS D C D
Sbjct: 207 GLAEWKYMPPRAFSIFQLVLSLLSVLFYISALVLWPLYQFIEELGGHPQRSSDEDCMDEL 266
Query: 1000 TYYVCPWDRRLAVAILTAINLL 1065
TY +C WD+RLAVA+LTA+NLL
Sbjct: 267 TYNMCAWDQRLAVAVLTAVNLL 288
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 36,186,118
Number of extensions: 1052583
Number of successful extensions: 5772
Number of sequences better than 1.0e-05: 36
Number of HSP's gapped: 5494
Number of HSP's successfully gapped: 36
Length of query: 356
Length of database: 17,681,374
Length adjustment: 103
Effective length of query: 253
Effective length of database: 14,273,310
Effective search space: 3611147430
Effective search space used: 3611147430
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003998
(1069 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_854291.1| PREDICTED: similar to myeloid-associated differ... 512 e-145
Alignment gi|XP_540492.1| PREDICTED: similar to myeloid-associated differ... 192 6e-49
>ref|XP_854291.1| PREDICTED: similar to myeloid-associated differentiation marker
[Canis familiaris].
Length = 322
Score = 512 bits (1319), Expect = e-145
Identities = 246/278 (88%), Positives = 257/278 (92%)
Frame = +1
Query: 235 PRAXXXXXXXXXXXXXISTCVAFSLVASVGAWTGAMGNWSMFTWCFCFAVTLIILIVELA 414
PRA +STCVAFSLVASVGAWTGAMGNWSMFTWCFCFAVTLIILIVEL
Sbjct: 29 PRALTQPLGLLRLLQLLSTCVAFSLVASVGAWTGAMGNWSMFTWCFCFAVTLIILIVELG 88
Query: 415 GLQARFPLSWRNFPITYACYAALFCLSASVIYPTTYVQFLSHGRSRDHAIAATAFSCIAC 594
GLQ+RFPLSWRNFPITYACYAALFCLSAS+IYPTTYVQFLSHGRSRDHAIAATAFSCIAC
Sbjct: 89 GLQSRFPLSWRNFPITYACYAALFCLSASIIYPTTYVQFLSHGRSRDHAIAATAFSCIAC 148
Query: 595 VAYATEVAWTRARPGEITGYMATVPGLLKVLETFVACVIFAFISNPNLYQHQPALEWCVA 774
VAYATEVAWTRARPGEITGYMATVPGLLKVLETFVAC+IFAFISNP+LYQHQPALEWCVA
Sbjct: 149 VAYATEVAWTRARPGEITGYMATVPGLLKVLETFVACIIFAFISNPSLYQHQPALEWCVA 208
Query: 775 VYSICFILAAVAILLNLGDCTNVLPIAFPTFLSGLALISVLFYATALVLWPLYQFDQKYG 954
VYSICFILAAVAILLNLGDCTN+LPI+FP+FLSGLAL+SVL YATALVLWPLYQF++KYG
Sbjct: 209 VYSICFILAAVAILLNLGDCTNMLPISFPSFLSGLALLSVLLYATALVLWPLYQFNEKYG 268
Query: 955 GHPRRSMDPGCGDRHTYYVCPWDRRLAVAILTAINLLA 1068
G PRRS D C DRHTYYVC WDRRLAVAILTAINLLA
Sbjct: 269 GQPRRSRDVSCADRHTYYVCTWDRRLAVAILTAINLLA 306
>ref|XP_540492.1| PREDICTED: similar to myeloid-associated differentiation marker
[Canis familiaris].
Length = 303
Score = 192 bits (487), Expect = 6e-49
Identities = 104/263 (39%), Positives = 146/263 (55%), Gaps = 5/263 (1%)
Frame = +1
Query: 292 CVAFSLVASVGAWTGAMGNWSMFTWCFCFAVTLIILIVELAGLQARFPLSWRNFPITYAC 471
C FSLVA G + G G + M W FCFA++ +++ E L + LSW NF +A
Sbjct: 30 CTTFSLVAHRGGFAGVQGTFCMAAWGFCFALSGLVVACEFTRLHSCLHLSWGNFTAAFAM 89
Query: 472 YAALFCLSASVIYPTTYVQFLSHGR-----SRDHAIAATAFSCIACVAYATEVAWTRARP 636
A L +A+VIYP + + +RD +AA+ F+ + +AYA EVA TRARP
Sbjct: 90 LATLLSATAAVIYPLYFTRLECPPEPAGCTARDFGLAASVFAGLLFLAYAAEVALTRARP 149
Query: 637 GEITGYMATVPGLLKVLETFVACVIFAFISNPNLYQHQPALEWCVAVYSICFILAAVAIL 816
G++T YMATV GLLK+++ FVAC+IF + + Y A +WCVAVYS+CF+ +
Sbjct: 150 GQVTSYMATVSGLLKIVQAFVACIIFGALVYDSRYGRYVATQWCVAVYSLCFLATVAVVA 209
Query: 817 LNLGDCTNVLPIAFPTFLSGLALISVLFYATALVLWPLYQFDQKYGGHPRRSMDPGCGDR 996
L++ T L F + ++VL Y +A V+WP++ FD KY G P R D G
Sbjct: 210 LSVTGHTGGLGCPFDRLVVVYTFLAVLLYLSAAVIWPVFCFDPKY-GEPGRPPDCPRGS- 267
Query: 997 HTYYVCPWDRRLAVAILTAINLL 1065
C WD +L VA T +NLL
Sbjct: 268 -----CSWDSQLVVATFTYVNLL 285
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 37,706,376
Number of extensions: 1085291
Number of successful extensions: 5765
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 5524
Number of HSP's successfully gapped: 2
Length of query: 356
Length of database: 18,874,504
Length adjustment: 104
Effective length of query: 252
Effective length of database: 15,407,560
Effective search space: 3882705120
Effective search space used: 3882705120
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003998
(1069 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001018657.1| myeloid-associated differentiation marker [H... 499 e-141
Alignment gi|NP_001018656.1| myeloid-associated differentiation marker [H... 499 e-141
Alignment gi|NP_001018655.1| myeloid-associated differentiation marker [H... 499 e-141
Alignment gi|NP_001018654.1| myeloid-associated differentiation marker [H... 499 e-141
Alignment gi|NP_612382.1| myeloid-associated differentiation marker [Homo... 499 e-141
Alignment gi|NP_001138585.2| myeloid-associated differentiation marker-li... 201 1e-51
Alignment gi|NP_002362.1| myelin and lymphocyte protein isoform a [Homo s... 49 6e-06
>ref|NP_001018657.1| myeloid-associated differentiation marker [Homo sapiens].
Length = 322
Score = 499 bits (1286), Expect = e-141
Identities = 239/278 (85%), Positives = 252/278 (90%)
Frame = +1
Query: 235 PRAXXXXXXXXXXXXXISTCVAFSLVASVGAWTGAMGNWSMFTWCFCFAVTLIILIVELA 414
PRA +STCVAFSLVASVGAWTG+MGNWSMFTWCFCF+VTLIILIVEL
Sbjct: 29 PRALTQPLGLLRLLQLVSTCVAFSLVASVGAWTGSMGNWSMFTWCFCFSVTLIILIVELC 88
Query: 415 GLQARFPLSWRNFPITYACYAALFCLSASVIYPTTYVQFLSHGRSRDHAIAATAFSCIAC 594
GLQARFPLSWRNFPIT+ACYAALFCLSAS+IYPTTYVQFLSHGRSRDHAIAAT FSCIAC
Sbjct: 89 GLQARFPLSWRNFPITFACYAALFCLSASIIYPTTYVQFLSHGRSRDHAIAATFFSCIAC 148
Query: 595 VAYATEVAWTRARPGEITGYMATVPGLLKVLETFVACVIFAFISNPNLYQHQPALEWCVA 774
VAYATEVAWTRARPGEITGYMATVPGLLKVLETFVAC+IFAFIS+PNLYQHQPALEWCVA
Sbjct: 149 VAYATEVAWTRARPGEITGYMATVPGLLKVLETFVACIIFAFISDPNLYQHQPALEWCVA 208
Query: 775 VYSICFILAAVAILLNLGDCTNVLPIAFPTFLSGLALISVLFYATALVLWPLYQFDQKYG 954
VY+ICFILAA+AILLNLG+CTNVLPI FP+FLSGLAL+SVL YATALVLWPLYQFD+KYG
Sbjct: 209 VYAICFILAAIAILLNLGECTNVLPIPFPSFLSGLALLSVLLYATALVLWPLYQFDEKYG 268
Query: 955 GHPRRSMDPGCGDRHTYYVCPWDRRLAVAILTAINLLA 1068
G PRRS D C H YYVC WDRRLAVAILTAINLLA
Sbjct: 269 GQPRRSRDVSCSRSHAYYVCAWDRRLAVAILTAINLLA 306
>ref|NP_001018656.1| myeloid-associated differentiation marker [Homo sapiens].
Length = 322
Score = 499 bits (1286), Expect = e-141
Identities = 239/278 (85%), Positives = 252/278 (90%)
Frame = +1
Query: 235 PRAXXXXXXXXXXXXXISTCVAFSLVASVGAWTGAMGNWSMFTWCFCFAVTLIILIVELA 414
PRA +STCVAFSLVASVGAWTG+MGNWSMFTWCFCF+VTLIILIVEL
Sbjct: 29 PRALTQPLGLLRLLQLVSTCVAFSLVASVGAWTGSMGNWSMFTWCFCFSVTLIILIVELC 88
Query: 415 GLQARFPLSWRNFPITYACYAALFCLSASVIYPTTYVQFLSHGRSRDHAIAATAFSCIAC 594
GLQARFPLSWRNFPIT+ACYAALFCLSAS+IYPTTYVQFLSHGRSRDHAIAAT FSCIAC
Sbjct: 89 GLQARFPLSWRNFPITFACYAALFCLSASIIYPTTYVQFLSHGRSRDHAIAATFFSCIAC 148
Query: 595 VAYATEVAWTRARPGEITGYMATVPGLLKVLETFVACVIFAFISNPNLYQHQPALEWCVA 774
VAYATEVAWTRARPGEITGYMATVPGLLKVLETFVAC+IFAFIS+PNLYQHQPALEWCVA
Sbjct: 149 VAYATEVAWTRARPGEITGYMATVPGLLKVLETFVACIIFAFISDPNLYQHQPALEWCVA 208
Query: 775 VYSICFILAAVAILLNLGDCTNVLPIAFPTFLSGLALISVLFYATALVLWPLYQFDQKYG 954
VY+ICFILAA+AILLNLG+CTNVLPI FP+FLSGLAL+SVL YATALVLWPLYQFD+KYG
Sbjct: 209 VYAICFILAAIAILLNLGECTNVLPIPFPSFLSGLALLSVLLYATALVLWPLYQFDEKYG 268
Query: 955 GHPRRSMDPGCGDRHTYYVCPWDRRLAVAILTAINLLA 1068
G PRRS D C H YYVC WDRRLAVAILTAINLLA
Sbjct: 269 GQPRRSRDVSCSRSHAYYVCAWDRRLAVAILTAINLLA 306
>ref|NP_001018655.1| myeloid-associated differentiation marker [Homo sapiens].
Length = 322
Score = 499 bits (1286), Expect = e-141
Identities = 239/278 (85%), Positives = 252/278 (90%)
Frame = +1
Query: 235 PRAXXXXXXXXXXXXXISTCVAFSLVASVGAWTGAMGNWSMFTWCFCFAVTLIILIVELA 414
PRA +STCVAFSLVASVGAWTG+MGNWSMFTWCFCF+VTLIILIVEL
Sbjct: 29 PRALTQPLGLLRLLQLVSTCVAFSLVASVGAWTGSMGNWSMFTWCFCFSVTLIILIVELC 88
Query: 415 GLQARFPLSWRNFPITYACYAALFCLSASVIYPTTYVQFLSHGRSRDHAIAATAFSCIAC 594
GLQARFPLSWRNFPIT+ACYAALFCLSAS+IYPTTYVQFLSHGRSRDHAIAAT FSCIAC
Sbjct: 89 GLQARFPLSWRNFPITFACYAALFCLSASIIYPTTYVQFLSHGRSRDHAIAATFFSCIAC 148
Query: 595 VAYATEVAWTRARPGEITGYMATVPGLLKVLETFVACVIFAFISNPNLYQHQPALEWCVA 774
VAYATEVAWTRARPGEITGYMATVPGLLKVLETFVAC+IFAFIS+PNLYQHQPALEWCVA
Sbjct: 149 VAYATEVAWTRARPGEITGYMATVPGLLKVLETFVACIIFAFISDPNLYQHQPALEWCVA 208
Query: 775 VYSICFILAAVAILLNLGDCTNVLPIAFPTFLSGLALISVLFYATALVLWPLYQFDQKYG 954
VY+ICFILAA+AILLNLG+CTNVLPI FP+FLSGLAL+SVL YATALVLWPLYQFD+KYG
Sbjct: 209 VYAICFILAAIAILLNLGECTNVLPIPFPSFLSGLALLSVLLYATALVLWPLYQFDEKYG 268
Query: 955 GHPRRSMDPGCGDRHTYYVCPWDRRLAVAILTAINLLA 1068
G PRRS D C H YYVC WDRRLAVAILTAINLLA
Sbjct: 269 GQPRRSRDVSCSRSHAYYVCAWDRRLAVAILTAINLLA 306
>ref|NP_001018654.1| myeloid-associated differentiation marker [Homo sapiens].
Length = 322
Score = 499 bits (1286), Expect = e-141
Identities = 239/278 (85%), Positives = 252/278 (90%)
Frame = +1
Query: 235 PRAXXXXXXXXXXXXXISTCVAFSLVASVGAWTGAMGNWSMFTWCFCFAVTLIILIVELA 414
PRA +STCVAFSLVASVGAWTG+MGNWSMFTWCFCF+VTLIILIVEL
Sbjct: 29 PRALTQPLGLLRLLQLVSTCVAFSLVASVGAWTGSMGNWSMFTWCFCFSVTLIILIVELC 88
Query: 415 GLQARFPLSWRNFPITYACYAALFCLSASVIYPTTYVQFLSHGRSRDHAIAATAFSCIAC 594
GLQARFPLSWRNFPIT+ACYAALFCLSAS+IYPTTYVQFLSHGRSRDHAIAAT FSCIAC
Sbjct: 89 GLQARFPLSWRNFPITFACYAALFCLSASIIYPTTYVQFLSHGRSRDHAIAATFFSCIAC 148
Query: 595 VAYATEVAWTRARPGEITGYMATVPGLLKVLETFVACVIFAFISNPNLYQHQPALEWCVA 774
VAYATEVAWTRARPGEITGYMATVPGLLKVLETFVAC+IFAFIS+PNLYQHQPALEWCVA
Sbjct: 149 VAYATEVAWTRARPGEITGYMATVPGLLKVLETFVACIIFAFISDPNLYQHQPALEWCVA 208
Query: 775 VYSICFILAAVAILLNLGDCTNVLPIAFPTFLSGLALISVLFYATALVLWPLYQFDQKYG 954
VY+ICFILAA+AILLNLG+CTNVLPI FP+FLSGLAL+SVL YATALVLWPLYQFD+KYG
Sbjct: 209 VYAICFILAAIAILLNLGECTNVLPIPFPSFLSGLALLSVLLYATALVLWPLYQFDEKYG 268
Query: 955 GHPRRSMDPGCGDRHTYYVCPWDRRLAVAILTAINLLA 1068
G PRRS D C H YYVC WDRRLAVAILTAINLLA
Sbjct: 269 GQPRRSRDVSCSRSHAYYVCAWDRRLAVAILTAINLLA 306
>ref|NP_612382.1| myeloid-associated differentiation marker [Homo sapiens].
Length = 322
Score = 499 bits (1286), Expect = e-141
Identities = 239/278 (85%), Positives = 252/278 (90%)
Frame = +1
Query: 235 PRAXXXXXXXXXXXXXISTCVAFSLVASVGAWTGAMGNWSMFTWCFCFAVTLIILIVELA 414
PRA +STCVAFSLVASVGAWTG+MGNWSMFTWCFCF+VTLIILIVEL
Sbjct: 29 PRALTQPLGLLRLLQLVSTCVAFSLVASVGAWTGSMGNWSMFTWCFCFSVTLIILIVELC 88
Query: 415 GLQARFPLSWRNFPITYACYAALFCLSASVIYPTTYVQFLSHGRSRDHAIAATAFSCIAC 594
GLQARFPLSWRNFPIT+ACYAALFCLSAS+IYPTTYVQFLSHGRSRDHAIAAT FSCIAC
Sbjct: 89 GLQARFPLSWRNFPITFACYAALFCLSASIIYPTTYVQFLSHGRSRDHAIAATFFSCIAC 148
Query: 595 VAYATEVAWTRARPGEITGYMATVPGLLKVLETFVACVIFAFISNPNLYQHQPALEWCVA 774
VAYATEVAWTRARPGEITGYMATVPGLLKVLETFVAC+IFAFIS+PNLYQHQPALEWCVA
Sbjct: 149 VAYATEVAWTRARPGEITGYMATVPGLLKVLETFVACIIFAFISDPNLYQHQPALEWCVA 208
Query: 775 VYSICFILAAVAILLNLGDCTNVLPIAFPTFLSGLALISVLFYATALVLWPLYQFDQKYG 954
VY+ICFILAA+AILLNLG+CTNVLPI FP+FLSGLAL+SVL YATALVLWPLYQFD+KYG
Sbjct: 209 VYAICFILAAIAILLNLGECTNVLPIPFPSFLSGLALLSVLLYATALVLWPLYQFDEKYG 268
Query: 955 GHPRRSMDPGCGDRHTYYVCPWDRRLAVAILTAINLLA 1068
G PRRS D C H YYVC WDRRLAVAILTAINLLA
Sbjct: 269 GQPRRSRDVSCSRSHAYYVCAWDRRLAVAILTAINLLA 306
>ref|NP_001138585.2| myeloid-associated differentiation marker-like protein 2 [Homo
sapiens].
Length = 307
Score = 201 bits (510), Expect = 1e-51
Identities = 106/263 (40%), Positives = 150/263 (57%), Gaps = 5/263 (1%)
Frame = +1
Query: 292 CVAFSLVASVGAWTGAMGNWSMFTWCFCFAVTLIILIVELAGLQARFPLSWRNFPITYAC 471
C FSLVA G + G G + M W FCFAV+ +++ E L LSW NF +A
Sbjct: 34 CTTFSLVAHRGGFAGVQGTFCMAAWGFCFAVSALVVACEFTRLHGCLRLSWGNFTAAFAM 93
Query: 472 YAALFCLSASVIYPTTYVQFLSHGR-----SRDHAIAATAFSCIACVAYATEVAWTRARP 636
A L C +A+V+YP + + +RD +AA+ F+ + +AYA EVA TRARP
Sbjct: 94 LATLLCATAAVLYPLYFARRECSPEPAGCAARDFRLAASVFAGLLFLAYAVEVALTRARP 153
Query: 637 GEITGYMATVPGLLKVLETFVACVIFAFISNPNLYQHQPALEWCVAVYSICFILAAVAIL 816
G+++ YMATV GLLK+++ FVAC+IF + + + Y A +WCVAVYS+CF+ +
Sbjct: 154 GQVSSYMATVSGLLKIVQAFVACIIFGALVHDSRYGRYVATQWCVAVYSLCFLATVAVVA 213
Query: 817 LNLGDCTNVLPIAFPTFLSGLALISVLFYATALVLWPLYQFDQKYGGHPRRSMDPGCGDR 996
L++ T L F + ++VL Y +A V+WP++ FD KY G P+R P C
Sbjct: 214 LSVMGHTGGLGCPFDRLVVVYTFLAVLLYLSAAVIWPVFCFDPKY-GEPKR--PPNCARG 270
Query: 997 HTYYVCPWDRRLAVAILTAINLL 1065
CPWD +L VAI T +NLL
Sbjct: 271 S----CPWDSQLVVAIFTYVNLL 289
>ref|NP_002362.1| myelin and lymphocyte protein isoform a [Homo sapiens].
Length = 153
Score = 49.3 bits (116), Expect = 6e-06
Identities = 37/111 (33%), Positives = 49/111 (44%), Gaps = 2/111 (1%)
Frame = +1
Query: 307 LVASVGAWTGAMGNWSMFTWCFCFAVTLIILIVELAGLQARFPLSWRNFPITYACYAALF 486
+ +S+ W G W MF FCF T ++I+ + G SW Y C AALF
Sbjct: 41 VASSLVPWPLVQG-WVMFVSVFCFVATTTLIILYIIGAHGG-ETSWVTLDAAYHCTAALF 98
Query: 487 CLSASVI--YPTTYVQFLSHGRSRDHAIAATAFSCIACVAYATEVAWTRAR 633
LSASV+ T +Q R IAA FS IA + Y ++ R
Sbjct: 99 YLSASVLEALATITMQDGFTYRHYHENIAAVVFSYIATLLYVVHAVFSLIR 149
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 36,778,769
Number of extensions: 1045181
Number of successful extensions: 5429
Number of sequences better than 1.0e-05: 7
Number of HSP's gapped: 5237
Number of HSP's successfully gapped: 7
Length of query: 356
Length of database: 18,297,164
Length adjustment: 104
Effective length of query: 252
Effective length of database: 14,868,908
Effective search space: 3746964816
Effective search space used: 3746964816
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003998
(1069 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_058665.2| myeloid-associated differentiation marker [Mus ... 467 e-132
Alignment gi|NP_001087235.1| myeloid-associated differentiation marker [M... 467 e-132
Alignment gi|NP_001087234.1| myeloid-associated differentiation marker [M... 467 e-132
Alignment gi|NP_001087233.1| myeloid-associated differentiation marker [M... 467 e-132
Alignment gi|NP_001171005.1| hypothetical protein LOC100271928 [Mus muscu... 339 2e-93
Alignment gi|NP_081027.1| myeloid-associated differentiation marker-like ... 196 3e-50
Alignment gi|NP_001191749.1| myeloid-associated differentiation marker-li... 68 1e-11
>ref|NP_058665.2| myeloid-associated differentiation marker [Mus musculus].
Length = 320
Score = 467 bits (1202), Expect = e-132
Identities = 224/266 (84%), Positives = 240/266 (90%), Gaps = 4/266 (1%)
Frame = +1
Query: 283 ISTCVAFSLVASVGAWTGAMGNWSMFTWCFCFAVTLIILIVELAGLQARFPLSWRNFPIT 462
ISTCVAFSLVASVGAWTG MGNW+MFTWCFCFAVTLIILIVEL GLQA FPLSWRNFPIT
Sbjct: 39 ISTCVAFSLVASVGAWTGPMGNWAMFTWCFCFAVTLIILIVELGGLQAHFPLSWRNFPIT 98
Query: 463 YACYAALFCLSASVIYPTTYVQFLSHGRSRDHAIAATAFSCIACVAYATEVAWTRARPGE 642
+ACYAALFCLS+S+IYPTTYVQFL+HGR+RDHAIAAT FSC+AC+AYATEVAWTRARPGE
Sbjct: 99 FACYAALFCLSSSIIYPTTYVQFLAHGRTRDHAIAATTFSCVACLAYATEVAWTRARPGE 158
Query: 643 ITGYMATVPGLLKVLETFVACVIFAFISNPNLYQHQPALEWCVAVYSICFILAAVAILLN 822
ITGYMATVPGLLKV ETFVAC+IFAFIS P LY +PALEWCVAVY+ICFILA V ILLN
Sbjct: 159 ITGYMATVPGLLKVFETFVACIIFAFISEPLLYNQKPALEWCVAVYAICFILAGVTILLN 218
Query: 823 LGDCTNVLPIAFPTFLSGLALISVLFYATALVLWPLYQFDQKYGGHPRRSMDPGCGDRHT 1002
LGDCTNVLPI FPTFLSGLAL+SVLFYATA+VLWPLYQFDQ+Y G PRRSMDP C +
Sbjct: 219 LGDCTNVLPIPFPTFLSGLALLSVLFYATAIVLWPLYQFDQRYQGQPRRSMDPSCTRSIS 278
Query: 1003 YY----VCPWDRRLAVAILTAINLLA 1068
Y VC WDRRLAV+ILT INLLA
Sbjct: 279 YIQPNTVCFWDRRLAVSILTGINLLA 304
>ref|NP_001087235.1| myeloid-associated differentiation marker [Mus musculus].
Length = 320
Score = 467 bits (1202), Expect = e-132
Identities = 224/266 (84%), Positives = 240/266 (90%), Gaps = 4/266 (1%)
Frame = +1
Query: 283 ISTCVAFSLVASVGAWTGAMGNWSMFTWCFCFAVTLIILIVELAGLQARFPLSWRNFPIT 462
ISTCVAFSLVASVGAWTG MGNW+MFTWCFCFAVTLIILIVEL GLQA FPLSWRNFPIT
Sbjct: 39 ISTCVAFSLVASVGAWTGPMGNWAMFTWCFCFAVTLIILIVELGGLQAHFPLSWRNFPIT 98
Query: 463 YACYAALFCLSASVIYPTTYVQFLSHGRSRDHAIAATAFSCIACVAYATEVAWTRARPGE 642
+ACYAALFCLS+S+IYPTTYVQFL+HGR+RDHAIAAT FSC+AC+AYATEVAWTRARPGE
Sbjct: 99 FACYAALFCLSSSIIYPTTYVQFLAHGRTRDHAIAATTFSCVACLAYATEVAWTRARPGE 158
Query: 643 ITGYMATVPGLLKVLETFVACVIFAFISNPNLYQHQPALEWCVAVYSICFILAAVAILLN 822
ITGYMATVPGLLKV ETFVAC+IFAFIS P LY +PALEWCVAVY+ICFILA V ILLN
Sbjct: 159 ITGYMATVPGLLKVFETFVACIIFAFISEPLLYNQKPALEWCVAVYAICFILAGVTILLN 218
Query: 823 LGDCTNVLPIAFPTFLSGLALISVLFYATALVLWPLYQFDQKYGGHPRRSMDPGCGDRHT 1002
LGDCTNVLPI FPTFLSGLAL+SVLFYATA+VLWPLYQFDQ+Y G PRRSMDP C +
Sbjct: 219 LGDCTNVLPIPFPTFLSGLALLSVLFYATAIVLWPLYQFDQRYQGQPRRSMDPSCTRSIS 278
Query: 1003 YY----VCPWDRRLAVAILTAINLLA 1068
Y VC WDRRLAV+ILT INLLA
Sbjct: 279 YIQPNTVCFWDRRLAVSILTGINLLA 304
>ref|NP_001087234.1| myeloid-associated differentiation marker [Mus musculus].
Length = 320
Score = 467 bits (1202), Expect = e-132
Identities = 224/266 (84%), Positives = 240/266 (90%), Gaps = 4/266 (1%)
Frame = +1
Query: 283 ISTCVAFSLVASVGAWTGAMGNWSMFTWCFCFAVTLIILIVELAGLQARFPLSWRNFPIT 462
ISTCVAFSLVASVGAWTG MGNW+MFTWCFCFAVTLIILIVEL GLQA FPLSWRNFPIT
Sbjct: 39 ISTCVAFSLVASVGAWTGPMGNWAMFTWCFCFAVTLIILIVELGGLQAHFPLSWRNFPIT 98
Query: 463 YACYAALFCLSASVIYPTTYVQFLSHGRSRDHAIAATAFSCIACVAYATEVAWTRARPGE 642
+ACYAALFCLS+S+IYPTTYVQFL+HGR+RDHAIAAT FSC+AC+AYATEVAWTRARPGE
Sbjct: 99 FACYAALFCLSSSIIYPTTYVQFLAHGRTRDHAIAATTFSCVACLAYATEVAWTRARPGE 158
Query: 643 ITGYMATVPGLLKVLETFVACVIFAFISNPNLYQHQPALEWCVAVYSICFILAAVAILLN 822
ITGYMATVPGLLKV ETFVAC+IFAFIS P LY +PALEWCVAVY+ICFILA V ILLN
Sbjct: 159 ITGYMATVPGLLKVFETFVACIIFAFISEPLLYNQKPALEWCVAVYAICFILAGVTILLN 218
Query: 823 LGDCTNVLPIAFPTFLSGLALISVLFYATALVLWPLYQFDQKYGGHPRRSMDPGCGDRHT 1002
LGDCTNVLPI FPTFLSGLAL+SVLFYATA+VLWPLYQFDQ+Y G PRRSMDP C +
Sbjct: 219 LGDCTNVLPIPFPTFLSGLALLSVLFYATAIVLWPLYQFDQRYQGQPRRSMDPSCTRSIS 278
Query: 1003 YY----VCPWDRRLAVAILTAINLLA 1068
Y VC WDRRLAV+ILT INLLA
Sbjct: 279 YIQPNTVCFWDRRLAVSILTGINLLA 304
>ref|NP_001087233.1| myeloid-associated differentiation marker [Mus musculus].
Length = 320
Score = 467 bits (1202), Expect = e-132
Identities = 224/266 (84%), Positives = 240/266 (90%), Gaps = 4/266 (1%)
Frame = +1
Query: 283 ISTCVAFSLVASVGAWTGAMGNWSMFTWCFCFAVTLIILIVELAGLQARFPLSWRNFPIT 462
ISTCVAFSLVASVGAWTG MGNW+MFTWCFCFAVTLIILIVEL GLQA FPLSWRNFPIT
Sbjct: 39 ISTCVAFSLVASVGAWTGPMGNWAMFTWCFCFAVTLIILIVELGGLQAHFPLSWRNFPIT 98
Query: 463 YACYAALFCLSASVIYPTTYVQFLSHGRSRDHAIAATAFSCIACVAYATEVAWTRARPGE 642
+ACYAALFCLS+S+IYPTTYVQFL+HGR+RDHAIAAT FSC+AC+AYATEVAWTRARPGE
Sbjct: 99 FACYAALFCLSSSIIYPTTYVQFLAHGRTRDHAIAATTFSCVACLAYATEVAWTRARPGE 158
Query: 643 ITGYMATVPGLLKVLETFVACVIFAFISNPNLYQHQPALEWCVAVYSICFILAAVAILLN 822
ITGYMATVPGLLKV ETFVAC+IFAFIS P LY +PALEWCVAVY+ICFILA V ILLN
Sbjct: 159 ITGYMATVPGLLKVFETFVACIIFAFISEPLLYNQKPALEWCVAVYAICFILAGVTILLN 218
Query: 823 LGDCTNVLPIAFPTFLSGLALISVLFYATALVLWPLYQFDQKYGGHPRRSMDPGCGDRHT 1002
LGDCTNVLPI FPTFLSGLAL+SVLFYATA+VLWPLYQFDQ+Y G PRRSMDP C +
Sbjct: 219 LGDCTNVLPIPFPTFLSGLALLSVLFYATAIVLWPLYQFDQRYQGQPRRSMDPSCTRSIS 278
Query: 1003 YY----VCPWDRRLAVAILTAINLLA 1068
Y VC WDRRLAV+ILT INLLA
Sbjct: 279 YIQPNTVCFWDRRLAVSILTGINLLA 304
>ref|NP_001171005.1| hypothetical protein LOC100271928 [Mus musculus].
Length = 316
Score = 339 bits (870), Expect = 2e-93
Identities = 159/278 (57%), Positives = 199/278 (71%)
Frame = +1
Query: 235 PRAXXXXXXXXXXXXXISTCVAFSLVASVGAWTGAMGNWSMFTWCFCFAVTLIILIVELA 414
PRA ST +AF LV +GAW G MG+W +F+W F FA+TLI+L VEL
Sbjct: 30 PRALLRPLGLLRLLQLCSTGMAFPLVLYMGAWMGPMGSWCVFSWSFSFAMTLIVLAVELT 89
Query: 415 GLQARFPLSWRNFPITYACYAALFCLSASVIYPTTYVQFLSHGRSRDHAIAATAFSCIAC 594
GLQ+R LSWR+FPIT ACYA LFCLS+S+IYP TYV+F+S+ R +A+ A FSCI+C
Sbjct: 90 GLQSRLLLSWRDFPITCACYAVLFCLSSSIIYPMTYVRFMSYDYIRKYAVCAIIFSCISC 149
Query: 595 VAYATEVAWTRARPGEITGYMATVPGLLKVLETFVACVIFAFISNPNLYQHQPALEWCVA 774
VAYATEV WT +RPG ITGYMA+ G+LKV E+F+ACVIF F+S P LY +PAL WC+
Sbjct: 150 VAYATEVTWTHSRPGYITGYMASKTGMLKVFESFIACVIFLFLSKPQLYGKEPALIWCLV 209
Query: 775 VYSICFILAAVAILLNLGDCTNVLPIAFPTFLSGLALISVLFYATALVLWPLYQFDQKYG 954
VY ICFIL V ILL LG CTN+LPI F T+L+G+ + VL Y TA+VLWPLYQF++++
Sbjct: 210 VYIICFILTMVVILLCLGKCTNILPIPFTTYLTGMTFMCVLLYTTAIVLWPLYQFNEEFH 269
Query: 955 GHPRRSMDPGCGDRHTYYVCPWDRRLAVAILTAINLLA 1068
G P R MD C + + VC WDR+L V LT +NL+A
Sbjct: 270 GFPHRVMDSSCSYKSAHSVCVWDRQLTVTFLTGVNLMA 307
>ref|NP_081027.1| myeloid-associated differentiation marker-like protein 2 isoform 1
[Mus musculus].
Length = 307
Score = 196 bits (498), Expect = 3e-50
Identities = 105/263 (39%), Positives = 149/263 (56%), Gaps = 5/263 (1%)
Frame = +1
Query: 292 CVAFSLVASVGAWTGAMGNWSMFTWCFCFAVTLIILIVELAGLQARFPLSWRNFPITYAC 471
C FSLVA G + G G + M W FCFA +++++ E L + LSW NF +A
Sbjct: 34 CTTFSLVAHRGGFGGVQGTFCMAAWGFCFAFSVLVVACEFTKLHSCLRLSWGNFTAAFAM 93
Query: 472 YAALFCLSASVIYPTTYVQFLSHGRS-----RDHAIAATAFSCIACVAYATEVAWTRARP 636
A L C +A+VIYP + + R+ +AA+ F+ + +AYA EVA TRARP
Sbjct: 94 LATLLCATAAVIYPLYFTRLECPPEPAGCMVRNFRLAASVFAGLLFLAYAAEVALTRARP 153
Query: 637 GEITGYMATVPGLLKVLETFVACVIFAFISNPNLYQHQPALEWCVAVYSICFILAAVAIL 816
G++ YMATV GLLK+++ FVAC+IF + + + Y A +WCVAVYS+CF+ ++
Sbjct: 154 GQVASYMATVSGLLKIVQAFVACIIFGALVHESRYGRYVATQWCVAVYSLCFMATVAVVV 213
Query: 817 LNLGDCTNVLPIAFPTFLSGLALISVLFYATALVLWPLYQFDQKYGGHPRRSMDPGCGDR 996
L++ T L F + ++VL Y +A V+WP++ FD KY G P R D G
Sbjct: 214 LSVMGHTAGLGCPFDRLVIVYTFLAVLLYLSAAVIWPVFCFDPKY-GEPGRPADCLRGS- 271
Query: 997 HTYYVCPWDRRLAVAILTAINLL 1065
CPWD +L VAI T +NLL
Sbjct: 272 -----CPWDSQLVVAIFTYVNLL 289
>ref|NP_001191749.1| myeloid-associated differentiation marker-like protein 2 isoform 2
[Mus musculus].
Length = 153
Score = 68.2 bits (165), Expect = 1e-11
Identities = 31/79 (39%), Positives = 44/79 (55%)
Frame = +1
Query: 292 CVAFSLVASVGAWTGAMGNWSMFTWCFCFAVTLIILIVELAGLQARFPLSWRNFPITYAC 471
C FSLVA G + G G + M W FCFA +++++ E L + LSW NF +A
Sbjct: 34 CTTFSLVAHRGGFGGVQGTFCMAAWGFCFAFSVLVVACEFTKLHSCLRLSWGNFTAAFAM 93
Query: 472 YAALFCLSASVIYPTTYVQ 528
A L C +A+VIYP + +
Sbjct: 94 LATLLCATAAVIYPLYFTR 112
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 30,795,490
Number of extensions: 854958
Number of successful extensions: 4184
Number of sequences better than 1.0e-05: 7
Number of HSP's gapped: 4018
Number of HSP's successfully gapped: 7
Length of query: 356
Length of database: 15,617,559
Length adjustment: 102
Effective length of query: 254
Effective length of database: 12,553,887
Effective search space: 3188687298
Effective search space used: 3188687298
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003998
(1069 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_003127453.1| PREDICTED: myeloid-associated differentiatio... 545 e-155
Alignment gi|XP_003127452.1| PREDICTED: myeloid-associated differentiatio... 545 e-155
Alignment gi|XP_001925042.1| PREDICTED: myeloid-associated differentiatio... 364 e-101
Alignment gi|XP_003128519.1| PREDICTED: myeloid-associated differentiatio... 345 2e-95
Alignment gi|XP_003356709.1| PREDICTED: myeloid-associated differentiatio... 336 1e-92
Alignment gi|XP_001924479.2| PREDICTED: myeloid-associated differentiatio... 268 4e-72
Alignment gi|XP_003361791.1| PREDICTED: myeloid-associated differentiatio... 65 5e-11
>ref|XP_003127453.1| PREDICTED: myeloid-associated differentiation marker-like isoform 2
[Sus scrofa].
Length = 322
Score = 545 bits (1403), Expect = e-155
Identities = 264/278 (94%), Positives = 265/278 (95%)
Frame = +1
Query: 235 PRAXXXXXXXXXXXXXISTCVAFSLVASVGAWTGAMGNWSMFTWCFCFAVTLIILIVELA 414
PRA ISTCVAFSLVASVGAWTGAMGNWSMFTWCFCFAVTLIILIVELA
Sbjct: 29 PRALTQPLGLLRLLQLISTCVAFSLVASVGAWTGAMGNWSMFTWCFCFAVTLIILIVELA 88
Query: 415 GLQARFPLSWRNFPITYACYAALFCLSASVIYPTTYVQFLSHGRSRDHAIAATAFSCIAC 594
GLQARFPLSWRNFPITYACYAALFCLSAS+IYPTTYVQFLSHGRSRDHAIAATAFSCIAC
Sbjct: 89 GLQARFPLSWRNFPITYACYAALFCLSASIIYPTTYVQFLSHGRSRDHAIAATAFSCIAC 148
Query: 595 VAYATEVAWTRARPGEITGYMATVPGLLKVLETFVACVIFAFISNPNLYQHQPALEWCVA 774
VAYATEVAWTRARPGEITGYMATVPGLLKVLETFVACVIFAFISNPNLYQHQPALEWCVA
Sbjct: 149 VAYATEVAWTRARPGEITGYMATVPGLLKVLETFVACVIFAFISNPNLYQHQPALEWCVA 208
Query: 775 VYSICFILAAVAILLNLGDCTNVLPIAFPTFLSGLALISVLFYATALVLWPLYQFDQKYG 954
VYSICFILAAVAILLNLGDCTNVLPIAFPTFLSGLALISVLFYATALVLWPLYQFDQKYG
Sbjct: 209 VYSICFILAAVAILLNLGDCTNVLPIAFPTFLSGLALISVLFYATALVLWPLYQFDQKYG 268
Query: 955 GHPRRSMDPGCGDRHTYYVCPWDRRLAVAILTAINLLA 1068
GHPRRSMDPGCGDRHTYYVCPWDRRLAVAILTAINLLA
Sbjct: 269 GHPRRSMDPGCGDRHTYYVCPWDRRLAVAILTAINLLA 306
>ref|XP_003127452.1| PREDICTED: myeloid-associated differentiation marker-like isoform 1
[Sus scrofa].
Length = 322
Score = 545 bits (1403), Expect = e-155
Identities = 264/278 (94%), Positives = 265/278 (95%)
Frame = +1
Query: 235 PRAXXXXXXXXXXXXXISTCVAFSLVASVGAWTGAMGNWSMFTWCFCFAVTLIILIVELA 414
PRA ISTCVAFSLVASVGAWTGAMGNWSMFTWCFCFAVTLIILIVELA
Sbjct: 29 PRALTQPLGLLRLLQLISTCVAFSLVASVGAWTGAMGNWSMFTWCFCFAVTLIILIVELA 88
Query: 415 GLQARFPLSWRNFPITYACYAALFCLSASVIYPTTYVQFLSHGRSRDHAIAATAFSCIAC 594
GLQARFPLSWRNFPITYACYAALFCLSAS+IYPTTYVQFLSHGRSRDHAIAATAFSCIAC
Sbjct: 89 GLQARFPLSWRNFPITYACYAALFCLSASIIYPTTYVQFLSHGRSRDHAIAATAFSCIAC 148
Query: 595 VAYATEVAWTRARPGEITGYMATVPGLLKVLETFVACVIFAFISNPNLYQHQPALEWCVA 774
VAYATEVAWTRARPGEITGYMATVPGLLKVLETFVACVIFAFISNPNLYQHQPALEWCVA
Sbjct: 149 VAYATEVAWTRARPGEITGYMATVPGLLKVLETFVACVIFAFISNPNLYQHQPALEWCVA 208
Query: 775 VYSICFILAAVAILLNLGDCTNVLPIAFPTFLSGLALISVLFYATALVLWPLYQFDQKYG 954
VYSICFILAAVAILLNLGDCTNVLPIAFPTFLSGLALISVLFYATALVLWPLYQFDQKYG
Sbjct: 209 VYSICFILAAVAILLNLGDCTNVLPIAFPTFLSGLALISVLFYATALVLWPLYQFDQKYG 268
Query: 955 GHPRRSMDPGCGDRHTYYVCPWDRRLAVAILTAINLLA 1068
GHPRRSMDPGCGDRHTYYVCPWDRRLAVAILTAINLLA
Sbjct: 269 GHPRRSMDPGCGDRHTYYVCPWDRRLAVAILTAINLLA 306
>ref|XP_001925042.1| PREDICTED: myeloid-associated differentiation marker-like [Sus
scrofa].
Length = 287
Score = 364 bits (934), Expect = e-101
Identities = 174/261 (66%), Positives = 199/261 (76%)
Frame = +1
Query: 283 ISTCVAFSLVASVGAWTGAMGNWSMFTWCFCFAVTLIILIVELAGLQARFPLSWRNFPIT 462
+ TCVAF L ASVG W+GA+G+W MF WCFCF +T IILI+EL L+ RF SW NF T
Sbjct: 11 LCTCVAFLLGASVGTWSGALGSWPMFIWCFCFVLTFIILIIELCELEDRFSFSWDNFLTT 70
Query: 463 YACYAALFCLSASVIYPTTYVQFLSHGRSRDHAIAATAFSCIACVAYATEVAWTRARPGE 642
Y CY+AL CLSAS+ YP TY+QFL RSRDHAI +TAFSCIA AYA EVAW RA+P
Sbjct: 71 YNCYSALLCLSASITYPITYIQFLPDSRSRDHAITSTAFSCIAFAAYAMEVAWNRAQPNA 130
Query: 643 ITGYMATVPGLLKVLETFVACVIFAFISNPNLYQHQPALEWCVAVYSICFILAAVAILLN 822
IT YMATVPGLLK LET VACVIFAFIS+P+LY+HQPAL WCV Y+ICF+LAAV ++LN
Sbjct: 131 ITSYMATVPGLLKGLETTVACVIFAFISSPHLYEHQPALGWCVVAYAICFLLAAVVLMLN 190
Query: 823 LGDCTNVLPIAFPTFLSGLALISVLFYATALVLWPLYQFDQKYGGHPRRSMDPGCGDRHT 1002
LG C N LPI F F GL L+SVL YA+ALVLW LYQFD+K GG P RS + C
Sbjct: 191 LGKCENRLPIPFHIFQLGLTLLSVLLYASALVLWSLYQFDEKVGGQPPRSSNVSCSHEPI 250
Query: 1003 YYVCPWDRRLAVAILTAINLL 1065
Y +C WD+RLAV ILTAINLL
Sbjct: 251 YSMCAWDQRLAVTILTAINLL 271
>ref|XP_003128519.1| PREDICTED: myeloid-associated differentiation marker-like [Sus
scrofa].
Length = 328
Score = 345 bits (885), Expect = 2e-95
Identities = 173/263 (65%), Positives = 197/263 (74%), Gaps = 2/263 (0%)
Frame = +1
Query: 283 ISTCVAFSLVASVGAWTGAMGNWSMFTWCFCFAVTLIILIVELAGLQARFPLSWRNFPIT 462
+STCVAFS+ AS G W G +G+WS+F WCFCF VTLIILIVE LQ+R P W NFPI
Sbjct: 44 LSTCVAFSMEASTGTWIGGIGSWSLFIWCFCFVVTLIILIVEFCELQSRIPFYWYNFPIN 103
Query: 463 YACYAALFCLSASVIYPTTYVQFLSHGRSRDHAIAATAFSCIACVAYATEVAWTRA--RP 636
YAC+AALFCL AS+IY TTYV L G +RD AI A+AFSCIA VAY TEV W A P
Sbjct: 104 YACHAALFCLLASIIYSTTYVHLLPPGPTRDQAITASAFSCIAAVAYVTEVVWIWACYLP 163
Query: 637 GEITGYMATVPGLLKVLETFVACVIFAFISNPNLYQHQPALEWCVAVYSICFILAAVAIL 816
GE TG+ TVP LLK LE VACVIFAFIS+P LYQHQPAL WCVAVY+ICF+L VA+L
Sbjct: 164 GEFTGF-TTVPMLLKGLENLVACVIFAFISSPYLYQHQPALVWCVAVYAICFLLDIVALL 222
Query: 817 LNLGDCTNVLPIAFPTFLSGLALISVLFYATALVLWPLYQFDQKYGGHPRRSMDPGCGDR 996
L DC N LP F L + L+SVL YA+ALVLWPLYQF++K GG P+RS D GC D
Sbjct: 223 QGLVDCDNRLPF-FSILLLVMNLLSVLLYASALVLWPLYQFEEKLGGQPQRSSDAGCRDE 281
Query: 997 HTYYVCPWDRRLAVAILTAINLL 1065
TY +C WD+RLAVA+LTAINLL
Sbjct: 282 VTYLMCTWDQRLAVAVLTAINLL 304
>ref|XP_003356709.1| PREDICTED: myeloid-associated differentiation marker-like [Sus
scrofa].
Length = 311
Score = 336 bits (862), Expect = 1e-92
Identities = 170/265 (64%), Positives = 199/265 (75%), Gaps = 5/265 (1%)
Frame = +1
Query: 286 STCVAFSLVASVGAWTGAMGNWSMFTWCFCFAVTLIILIVELAGLQARFPLSWRNFPITY 465
STCVAFSLVA +G GA+GNW++ WCFCFAVTLIIL++++ L + FP + +TY
Sbjct: 24 STCVAFSLVADMGIGRGALGNWTLSIWCFCFAVTLIILMLQIWKLMSDFPSIRYKYSVTY 83
Query: 466 ACYAALFCLSASVIYPTTYVQFLSHGRSRDHAIAATAFSCIACVAYATEVA--WTRARPG 639
ACYAAL CLS SVIY TTYVQFL +G RD AIAA FSCIA + YA EV W
Sbjct: 84 ACYAALLCLSVSVIYSTTYVQFLPYGPYRDRAIAAIVFSCIAFLLYAVEVGVIWRVFWFS 143
Query: 640 EITGYMATVPGLLKVLETFVACVIFAFISNPNLYQHQPALEWCVAVYSICFILAAVAILL 819
++T Y+ TVPGLLKVLETF ACVIFAFISN +LY QPAL WCVAVY+ICF+ AAV ++L
Sbjct: 144 DVTCYVLTVPGLLKVLETFTACVIFAFISNTSLYHDQPALRWCVAVYTICFLQAAVVLVL 203
Query: 820 NLGDCTNVLPIAFPTFLSGLALISVLFYATALVLWPLYQFDQKYGGHPRRSMDPGC---G 990
NLGDC LPI FP F GL L+SVL YA+A+VLWPLYQFD+K GG P+RS D C G
Sbjct: 204 NLGDCEYRLPIPFPIFQLGLTLLSVLLYASAVVLWPLYQFDEKVGGQPQRSSDVNCSIMG 263
Query: 991 DRHTYYVCPWDRRLAVAILTAINLL 1065
D + YYVCPWD+RLAV +LTAINLL
Sbjct: 264 DPN-YYVCPWDQRLAVTVLTAINLL 287
>ref|XP_001924479.2| PREDICTED: myeloid-associated differentiation marker-like [Sus
scrofa].
Length = 308
Score = 268 bits (685), Expect = 4e-72
Identities = 150/261 (57%), Positives = 177/261 (67%)
Frame = +1
Query: 283 ISTCVAFSLVASVGAWTGAMGNWSMFTWCFCFAVTLIILIVELAGLQARFPLSWRNFPIT 462
+STCVAFSLV GAW + N S+F WCFCF VTLIILIVEL L + F SW +F I
Sbjct: 41 LSTCVAFSLVVIAGAWNEDLNNSSVFIWCFCFTVTLIILIVELLELDSAF-YSWDSFLIV 99
Query: 463 YACYAALFCLSASVIYPTTYVQFLSHGRSRDHAIAATAFSCIACVAYATEVAWTRARPGE 642
YA Y LFCLS S+ Y Y+QF+ G R++AIAATAFSCIA VAYA EV WT E
Sbjct: 100 YASYFTLFCLSTSIAYSIIYLQFIPDGSPRNYAIAATAFSCIASVAYAIEVVWTCVHT-E 158
Query: 643 ITGYMATVPGLLKVLETFVACVIFAFISNPNLYQHQPALEWCVAVYSICFILAAVAILLN 822
T + PGLLK LE FVACVIF FISN +LY H AL W VAVYSICFIL AIL +
Sbjct: 159 ATS--CSFPGLLKRLEIFVACVIFTFISNTSLYWHHLALRWYVAVYSICFILVTTAILGH 216
Query: 823 LGDCTNVLPIAFPTFLSGLALISVLFYATALVLWPLYQFDQKYGGHPRRSMDPGCGDRHT 1002
C ++ P+ F F+ L S LFY TA+VLWPLYQF++++GG P+RS + C
Sbjct: 217 KCKC-DIRPL-FTCFV-WQTLPSTLFYFTAVVLWPLYQFNEEFGGQPQRSSNATCSS--V 271
Query: 1003 YYVCPWDRRLAVAILTAINLL 1065
++C WD+RLAVAILTAINLL
Sbjct: 272 IFMCVWDQRLAVAILTAINLL 292
>ref|XP_003361791.1| PREDICTED: myeloid-associated differentiation marker-like protein
2-like [Sus scrofa].
Length = 223
Score = 65.5 bits (158), Expect = 5e-11
Identities = 42/130 (32%), Positives = 65/130 (50%), Gaps = 5/130 (3%)
Frame = +1
Query: 292 CVAFSLVASVGAWTGAMGNWSMFTWCFCFAVTLIILIVELAGLQARFPLSWRNFPITYAC 471
C FSLVA G + G G + M W FCFA++++++ E L ++C
Sbjct: 34 CTTFSLVAHRGGFAGVQGTFCMAAWGFCFALSVLVVACEFTRL--------------HSC 79
Query: 472 YAALFCLSASVIYPTTYVQF-----LSHGRSRDHAIAATAFSCIACVAYATEVAWTRARP 636
L +A+VIYP + + + +RD +AA+ F+ + +AYA EVA TRAR
Sbjct: 80 LRLLLSATAAVIYPLYFTRLECPPDPAGCMARDFRLAASIFAGLLFLAYAAEVALTRAR- 138
Query: 637 GEITGYMATV 666
++ATV
Sbjct: 139 ---LSFLATV 145
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 23,441,791
Number of extensions: 687114
Number of successful extensions: 3837
Number of sequences better than 1.0e-05: 7
Number of HSP's gapped: 3657
Number of HSP's successfully gapped: 7
Length of query: 356
Length of database: 11,343,932
Length adjustment: 100
Effective length of query: 256
Effective length of database: 8,854,232
Effective search space: 2266683392
Effective search space used: 2266683392
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003998
(1069 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr06 1804 0.0
Sscrofa_Chr07 379 e-102
>Sscrofa_Chr06
|| Length = 157765593
Score = 1804 bits (910), Expect = 0.0
Identities = 919/922 (99%)
Strand = Plus / Plus
Query: 148 gccatgccggtgacggtgacccgtaccaccatcacgacaaccacgtcgtcgtcctcgggc 207
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 52976600 gccatgccggtgacggtgacccgtaccaccatcacgacaaccacgtcgtcgtcctcgggc 52976659
Query: 208 ctgggctcctcgaccatcgtggggtcccctcgggcactgacccagcccctgggcctcctc 267
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 52976660 ctgggctcctcgaccatcgtggggtcccctcgggcactgacccagcccctgggcctcctc 52976719
Query: 268 cgcctgctgcagctgatctccacctgcgtggccttctcactggtggccagcgtgggcgcg 327
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 52976720 cgcctgctgcagctgatctccacctgcgtggccttctcactggtggccagcgtgggcgcg 52976779
Query: 328 tggaccggagccatgggtaactggtccatgttcacgtggtgcttctgcttcgccgtgacc 387
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 52976780 tggaccggagccatgggtaactggtccatgttcacgtggtgcttctgcttcgccgtgacc 52976839
Query: 388 ctcatcatcctcatcgtcgagttagcggggctccaggcccgcttccccctgtcctggcgc 447
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 52976840 ctcatcatcctcatcgtcgagttagcggggctccaggcccgcttccccctgtcctggcgc 52976899
Query: 448 aacttccccatcacctacgcctgctacgccgccctcttctgcctctcggcctccgtcatc 507
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 52976900 aacttccccatcacctacgcctgctacgccgccctcttctgcctctcggcctccatcatc 52976959
Query: 508 taccccaccacctacgtccagttcttgtcccacggccgctcccgggaccatgccatcgcc 567
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 52976960 taccccaccacctacgtccagttcttgtcccacggccgctcccgggaccatgccatcgcc 52977019
Query: 568 gcaaccgccttctcctgcatcgcctgtgtggcttatgccaccgaagtggcctggacccgg 627
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 52977020 gcaaccgccttctcctgcatcgcctgtgtggcttatgccaccgaagtggcctggacccgg 52977079
Query: 628 gcccggcccggcgagatcaccggctacatggccaccgtgccaggcctgctcaaggtgctg 687
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 52977080 gcccggcccggcgagatcaccggctacatggccaccgtgccaggcctgctcaaggtgctg 52977139
Query: 688 gagaccttcgtggcctgtgtcatcttcgccttcatcagcaaccccaacctgtaccagcac 747
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 52977140 gagaccttcgtggcctgtgtcatcttcgccttcatcagcaaccccaacctgtaccagcac 52977199
Query: 748 cagccagccctggagtggtgcgtggccgtgtactccatctgcttcatcctggcggctgtg 807
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 52977200 cagccagccctggagtggtgcgtggccgtgtactccatctgcttcatcctggcggctgtg 52977259
Query: 808 gccatcctgctgaacctgggcgactgcacgaacgtgctgcccatcgccttccccactttc 867
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 52977260 gccatcctgctgaacctgggcgactgcacgaacgtgctgcccatcgccttccccactttc 52977319
Query: 868 ctgtcggggctggccctgatctccgtcctcttctatgccacggctctggtcctctggccg 927
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 52977320 ctgtccgggctggccctgatctccgtcctcttctatgccacggctctggtcctctggccg 52977379
Query: 928 ctttaccagttcgaccagaagtatggcggccatccccggcggtccatggatccaggctgc 987
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 52977380 ctctaccagttcgaccagaagtatggcggccatccccggcggtccatggatccaggctgc 52977439
Query: 988 ggcgaccggcacacctattacgtgtgcccctgggaccgacgtctggctgtggccatcctg 1047
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 52977440 ggcgaccggcacacctattacgtgtgcccctgggaccgacgtctggctgtggccatcctg 52977499
Query: 1048 acagccatcaacctgctggctt 1069
||||||||||||||||||||||
Sbjct: 52977500 acagccatcaacctgctggctt 52977521
Score = 155 bits (78), Expect = 6e-35
Identities = 78/78 (100%)
Strand = Plus / Plus
Query: 71 agccttttccaggtgtctgccttaatccgcctccagagccggatctttctctggtggggt 130
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 52974363 agccttttccaggtgtctgccttaatccgcctccagagccggatctttctctggtggggt 52974422
Query: 131 cctcagcaaaggccgctg 148
||||||||||||||||||
Sbjct: 52974423 cctcagcaaaggccgctg 52974440
Score = 135 bits (68), Expect = 6e-29
Identities = 68/68 (100%)
Strand = Plus / Plus
Query: 5 agtccgcagacccttctagtctgcagctgtcgcctctgcttcagccgctaacgccacagg 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 52972537 agtccgcagacccttctagtctgcagctgtcgcctctgcttcagccgctaacgccacagg 52972596
Query: 65 cccttgag 72
||||||||
Sbjct: 52972597 cccttgag 52972604
>Sscrofa_Chr07
|| Length = 134764511
Score = 379 bits (191), Expect = e-102
Identities = 554/675 (82%)
Strand = Plus / Minus
Query: 264 cctccgcctgctgcagctgatctccacctgcgtggccttctcactggtggccagcgtggg 323
|||||| | |||||||||| ||| ||||||||||||||||| |||| ||||||||||||
Sbjct: 59288950 cctccgacggctgcagctgctctgcacctgcgtggccttcttgctgggggccagcgtggg 59288891
Query: 324 cgcgtggaccggagccatgggtaactggtccatgttcacgtggtgcttctgcttcgccgt 383
| | |||| ||| ||| | |||| |||| ||||||||| |||||||||||||| | | |
Sbjct: 59288890 cacttggagcggggccctaggtagctggcccatgttcatctggtgcttctgctttgtcct 59288831
Query: 384 gaccctcatcatcctcatcgtcgagttagcggggctccaggcccgcttccccctgtcctg 443
|||| |||||||||||||| |||||||| | ||| ||| || ||| || | |||||
Sbjct: 59288830 gaccttcatcatcctcatcatcgagttatgtgagcttgaggatcgattctccttttcctg 59288771
Query: 444 gcgcaacttccccatcacctacgcctgctacgccgccctcttctgcctctcggcctccgt 503
| |||||| | || ||||||| ||||||| | |||||| |||||||||| |||||| |
Sbjct: 59288770 ggacaactttctcaccacctacaactgctactctgccctcctctgcctctcagcctccat 59288711
Query: 504 catctaccccaccacctacgtccagttcttgtcccacggccgctcccgggaccatgccat 563
|| |||||||| ||||||| ||||||||||| | || ||||||||||||||||||||||
Sbjct: 59288710 cacctaccccatcacctacatccagttcttgcctgacagccgctcccgggaccatgccat 59288651
Query: 564 cgccgcaaccgccttctcctgcatcgcctgtgtggcttatgccaccgaagtggcctggac 623
| || | || || |||||||| || || | || |||||||||| |||||||||||||
Sbjct: 59288650 cacctccactgcgttctcctgtattgcttttgccgcttatgccatggaagtggcctggaa 59288591
Query: 624 ccgggcccggcccggcgagatcaccggctacatggccaccgtgccaggcctgctcaaggt 683
| |||||| |||| || |||||| |||||||||||||||||||||| ||||||||||
Sbjct: 59288590 cagggcccagcccaacgcaatcaccagctacatggccaccgtgccagggctgctcaaggg 59288531
Query: 684 gctggagaccttcgtggcctgtgtcatcttcgccttcatcagcaaccccaacctgtacca 743
||||||||| ||||||||||||||||||||| |||||||||| |||| ||||||| |
Sbjct: 59288530 actggagaccaccgtggcctgtgtcatcttcgctttcatcagcagcccccacctgtatga 59288471
Query: 744 gcaccagccagccctggagtggtgcgtggccgtgtactccatctgcttcatcctggcggc 803
||| ||||||||||||| |||||||||| || || ||||||||||| ||||||| ||
Sbjct: 59288470 gcatcagccagccctgggctggtgcgtggtcgcatatgccatctgcttcctcctggcagc 59288411
Query: 804 tgtggccatcctgctgaacctgggcgactgcacgaacgtgctgcccatcgccttccccac 863
|||| | || |||||||||||||| | || |||| |||||||||| |||||| ||
Sbjct: 59288410 cgtggtcctcatgctgaacctgggcaaatgtgagaacaggctgcccatccccttccacat 59288351
Query: 864 tttcctgtcggggctggccctgatctccgtcctcttctatgccacggctctggtcctctg 923
||||| | ||||||| ||||| |||| |||||| ||||||||| || |||||||||||
Sbjct: 59288350 tttccagctggggctgaccctgctctctgtcctcctctatgccagcgcgctggtcctctg 59288291
Query: 924 gccgctttaccagtt 938
| | || ||||||||
Sbjct: 59288290 gtctctctaccagtt 59288276
Score = 238 bits (120), Expect = 5e-60
Identities = 430/533 (80%), Gaps = 9/533 (1%)
Strand = Plus / Plus
Query: 266 tccgcctgctgcagctgatctccacctgcgtggccttctcactggtggccagcgtgggcg 325
||||| ||||||||||| |||||||||| ||||||||||| ||| ||||||| |||
Sbjct: 59100087 tccgcgtgctgcagctgctctccacctgtgtggccttctccatggaggccagcacaggca 59100146
Query: 326 cgtggaccggagccatgggtaactggtccatgttcacgtggtgcttctgcttcgccgtga 385
| |||| || | ||| |||| ||||||| |||||| |||||||||||||| | |||||
Sbjct: 59100147 cttggataggtggcataggtagctggtccctgttcatctggtgcttctgctttgtcgtga 59100206
Query: 386 ccctcatcatcctcatcgtcgagttagcggggctccaggcccgcttccccctgtcctggc 445
|||||||||||||||| |||||||| | ||||||| ||||| ||||| | | ||||
Sbjct: 59100207 ccctcatcatcctcatagtcgagttctgcgagctccagtcccgcatccccttctactggt 59100266
Query: 446 gcaacttccccatcacctacgcctgctacgccgccctcttctgcctctcggcctccgtca 505
||| || ||||||| ||||||||| | || ||||||||||| |||| ||||||| |||
Sbjct: 59100267 acaattttcccatcaattacgcctgccatgcggccctcttctgtctcttggcctccatca 59100326
Query: 506 tctaccccaccacctacgtccagttcttgtcccacggccgctcccgggaccatgccatcg 565
||||| |||||||||||||||| ||||| | | |||| | |||||||||| ||||||
Sbjct: 59100327 tctactccaccacctacgtccacctcttgcctcctggccccacccgggaccaagccatca 59100386
Query: 566 ccgcaaccgccttctcctgcatcgcctgtgtggcttatgccaccgaagtggcctggaccc 625
| || | || |||||||||||||| |||||||||| ||||||||||| ||||| |
Sbjct: 59100387 ctgccagtgcgttctcctgcatcgctgccgtggcttatgtcaccgaagtggtctggatct 59100446
Query: 626 gggc------ccggcccggcgagatcaccggctacatggccaccgtgccaggcctgctca 679
|||| || ||| || ||| |||| |||| | | || |||||| ||| | |
Sbjct: 59100447 gggcttgttacctgcctggtgagttcactggct---ttacgactgtgccaatgctgttga 59100503
Query: 680 aggtgctggagaccttcgtggcctgtgtcatcttcgccttcatcagcaaccccaacctgt 739
||| |||||||| ||| ||||||||||||||||||||||||||||||| ||| ||||||
Sbjct: 59100504 aggggctggagaacttagtggcctgtgtcatcttcgccttcatcagcagtccctacctgt 59100563
Query: 740 accagcaccagccagccctggagtggtgcgtggccgtgtactccatctgcttc 792
||||||||||||| ||||||| |||||| ||||||||||| |||||||||||
Sbjct: 59100564 accagcaccagccggccctggtgtggtgtgtggccgtgtatgccatctgcttc 59100616
Score = 194 bits (98), Expect = 7e-47
Identities = 326/402 (81%)
Strand = Plus / Minus
Query: 664 gtgccaggcctgctcaaggtgctggagaccttcgtggcctgtgtcatcttcgccttcatc 723
|||||||||||||| ||| |||||||||||||| |||||||||||||||||||||||||
Sbjct: 59024686 gtgccaggcctgctgaagatgctggagaccttcacggcctgtgtcatcttcgccttcatc 59024627
Query: 724 agcaaccccaacctgtaccagcaccagccagccctggagtggtgcgtggccgtgtactcc 783
|||||| || |||||||||| ||||||| |||||| ||||||||||||||||||| ||
Sbjct: 59024626 agcaacacctccctgtaccaggaccagccggccctgaggtggtgcgtggccgtgtacacc 59024567
Query: 784 atctgcttcatcctggcggctgtggccatcctgctgaacctgggcgactgcacgaacgtg 843
||||| ||| ||| || | |||| | | ||||||||||||| ||||| || |
Sbjct: 59024566 atctgtttcctccatgccaccgtggtccttgtgctgaacctgggggactgtgaatacagg 59024507
Query: 844 ctgcccatcgccttccccactttcctgtcggggctggccctgatctccgtcctcttctat 903
||||||||| ||||||||| ||||| | |||||| ||||| ||||||||||| ||||
Sbjct: 59024506 ctgcccatccccttccccattttccagctggggctcaccctgctctccgtcctcctctac 59024447
Query: 904 gccacggctctggtcctctggccgctttaccagttcgaccagaagtatggcggccatccc 963
|||| || |||||||||||||| || |||||||| || ||||| || ||||| |||
Sbjct: 59024446 gccagcgcactggtcctctggcctctctaccagtttgatgagaaggtgggtggccagccc 59024387
Query: 964 cggcggtccatggatccaggctgcggcgaccggcacacctattacgtgtgcccctgggac 1023
| |||||||| ||| ||||| || || |||||| | ||||||| ||||||||
Sbjct: 59024386 cagcggtccagcgatgttagctgcaaagatgagctcacctactccgtgtgcgcctgggac 59024327
Query: 1024 cgacgtctggctgtggccatcctgacagccatcaacctgctg 1065
| ||| ||||||||| | |||||||||||||||||||||||
Sbjct: 59024326 caacgactggctgtgacagtcctgacagccatcaacctgctg 59024285
Score = 194 bits (98), Expect = 7e-47
Identities = 326/402 (81%)
Strand = Plus / Plus
Query: 664 gtgccaggcctgctcaaggtgctggagaccttcgtggcctgtgtcatcttcgccttcatc 723
|||||||||||||| ||| |||||||||||||| |||||||||||||||||||||||||
Sbjct: 59168220 gtgccaggcctgctgaagatgctggagaccttcacggcctgtgtcatcttcgccttcatc 59168279
Query: 724 agcaaccccaacctgtaccagcaccagccagccctggagtggtgcgtggccgtgtactcc 783
|||||| || |||||||||| ||||||| |||||| ||||||||||||||||||| ||
Sbjct: 59168280 agcaacacctccctgtaccaggaccagccggccctgaggtggtgcgtggccgtgtacacc 59168339
Query: 784 atctgcttcatcctggcggctgtggccatcctgctgaacctgggcgactgcacgaacgtg 843
||||| ||| ||| || | |||| | | ||||||||||||| ||||| || |
Sbjct: 59168340 atctgtttcctccatgccaccgtggtccttgtgctgaacctgggggactgtgaatacagg 59168399
Query: 844 ctgcccatcgccttccccactttcctgtcggggctggccctgatctccgtcctcttctat 903
||||||||| ||||||||| ||||| | |||||| ||||| ||||||||||| ||||
Sbjct: 59168400 ctgcccatccccttccccattttccagctggggctcaccctgctctccgtcctcctctac 59168459
Query: 904 gccacggctctggtcctctggccgctttaccagttcgaccagaagtatggcggccatccc 963
|||| || |||||||||||||| || |||||||| || ||||| || ||||| |||
Sbjct: 59168460 gccagcgcactggtcctctggcctctctaccagtttgatgagaaggtgggtggccagccc 59168519
Query: 964 cggcggtccatggatccaggctgcggcgaccggcacacctattacgtgtgcccctgggac 1023
| |||||||| ||| ||||| || || |||||| | ||||||| ||||||||
Sbjct: 59168520 cagcggtccagcgatgttagctgcaaagatgagctcacctactccgtgtgcgcctgggac 59168579
Query: 1024 cgacgtctggctgtggccatcctgacagccatcaacctgctg 1065
| ||| ||||||||| | |||||||||||||||||||||||
Sbjct: 59168580 caacgactggctgtgacagtcctgacagccatcaacctgctg 59168621
Score = 188 bits (95), Expect = 4e-45
Identities = 230/275 (83%)
Strand = Plus / Minus
Query: 664 gtgccaggcctgctcaaggtgctggagaccttcgtggcctgtgtcatcttcgccttcatc 723
|||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 59235608 gtgccaggcctgctgaaggtgctggagaccttcacggcctgtgtcatcttcgccttcatc 59235549
Query: 724 agcaaccccaacctgtaccagcaccagccagccctggagtggtgcgtggccgtgtactcc 783
|||||| || ||||||||| ||||||| |||||| ||||||||||||||||||| ||
Sbjct: 59235548 agcaacacctccctgtaccacgaccagccggccctgaggtggtgcgtggccgtgtacacc 59235489
Query: 784 atctgcttcatcctggcggctgtggccatcctgctgaacctgggcgactgcacgaacgtg 843
||||| ||| ||| ||| || |||| | | | ||||||||||| ||||| || |
Sbjct: 59235488 atctgtttcctccaggccgccgtggtccttgtactgaacctgggggactgtgaatacagg 59235429
Query: 844 ctgcccatcgccttccccactttcctgtcggggctggccctgatctccgtcctcttctat 903
||||||||| ||||||||| ||||| | |||||| ||||| ||||||||||| |||||
Sbjct: 59235428 ctgcccatccccttccccattttccagctggggctcaccctgctctccgtcctcctctat 59235369
Query: 904 gccacggctctggtcctctggccgctttaccagtt 938
|||| || ||||||||||||| || ||||||||
Sbjct: 59235368 gccagtgcggtggtcctctggcctctctaccagtt 59235334
Score = 174 bits (88), Expect = 6e-41
Identities = 220/264 (83%)
Strand = Plus / Plus
Query: 660 caccgtgccaggcctgctcaaggtgctggagaccttcgtggcctgtgtcatcttcgcctt 719
|||| ||||||||||||| |||||||||||||||||| |||||||||||||||||||||
Sbjct: 58984432 caccatgccaggcctgctgaaggtgctggagaccttcacggcctgtgtcatcttcgcctt 58984491
Query: 720 catcagcaaccccaacctgtaccagcaccagccagccctggagtggtgcgtggccgtgta 779
|||||||||| || ||||||||| ||||||| |||||| ||||||||||||||||||
Sbjct: 58984492 catcagcaacacctccctgtaccacgaccagccggccctgcggtggtgcgtggccgtgta 58984551
Query: 780 ctccatctgcttcatcctggcggctgtggccatcctgctgaacctgggcgactgcacgaa 839
| ||||||| ||| ||| ||| || |||| | | | ||||||||||| ||||| |
Sbjct: 58984552 caccatctgtttcctccaggccgccgtggtccttgtactgaacctgggggactgtgaata 58984611
Query: 840 cgtgctgcccatcgccttccccactttcctgtcggggctggccctgatctccgtcctctt 899
| |||||||||| ||||||||| ||||| | |||||| ||||| ||||||||||| |
Sbjct: 58984612 caggctgcccatccccttccccattttccagctggggctcaccctgctctccgtcctcct 58984671
Query: 900 ctatgccacggctctggtcctctg 923
||| |||| || |||||||||||
Sbjct: 58984672 ctacgccagtgcactggtcctctg 58984695
Score = 174 bits (88), Expect = 6e-41
Identities = 220/264 (83%)
Strand = Plus / Minus
Query: 660 caccgtgccaggcctgctcaaggtgctggagaccttcgtggcctgtgtcatcttcgcctt 719
|||| ||||||||||||| |||||||||||||||||| |||||||||||||||||||||
Sbjct: 59206706 caccatgccaggcctgctgaaggtgctggagaccttcacggcctgtgtcatcttcgcctt 59206647
Query: 720 catcagcaaccccaacctgtaccagcaccagccagccctggagtggtgcgtggccgtgta 779
|||||||||| || ||||||||| ||||||| |||||| ||||||||||||||||||
Sbjct: 59206646 catcagcaacacctccctgtaccacgaccagccggccctgcggtggtgcgtggccgtgta 59206587
Query: 780 ctccatctgcttcatcctggcggctgtggccatcctgctgaacctgggcgactgcacgaa 839
| ||||||| ||| ||| ||| || |||| | | | ||||||||||| ||||| |
Sbjct: 59206586 caccatctgtttcctccaggccgccgtggtccttgtactgaacctgggggactgtgaata 59206527
Query: 840 cgtgctgcccatcgccttccccactttcctgtcggggctggccctgatctccgtcctctt 899
| |||||||||| ||||||||| ||||| | |||||| ||||| ||||||||||| |
Sbjct: 59206526 caggctgcccatccccttccccattttccagctggggctcaccctgctctccgtcctcct 59206467
Query: 900 ctatgccacggctctggtcctctg 923
||| |||| || |||||||||||
Sbjct: 59206466 ctacgccagtgcactggtcctctg 59206443
Score = 149 bits (75), Expect = 4e-33
Identities = 129/147 (87%)
Strand = Plus / Minus
Query: 673 ctgctcaaggtgctggagaccttcgtggcctgtgtcatcttcgccttcatcagcaacccc 732
||||||||| |||||||| ||| ||||||||||||||||| ||||||||||||| ||||
Sbjct: 59277190 ctgctcaagaggctggagatctttgtggcctgtgtcatctttgccttcatcagcagcccc 59277131
Query: 733 aacctgtaccagcaccagccagccctggagtggtgcgtggccgtgtactccatctgcttc 792
|||||||||||||||||| ||||||| ||||||| |||| ||||| |||||||||||
Sbjct: 59277130 tccctgtaccagcaccagccggccctggggtggtgcatggctgtgtatgccatctgcttc 59277071
Query: 793 atcctggcggctgtggccatcctgctg 819
||||| | ||||||||| ||||||||
Sbjct: 59277070 ctcctgtcagctgtggccctcctgctg 59277044
Score = 147 bits (74), Expect = 1e-32
Identities = 131/150 (87%)
Strand = Plus / Minus
Query: 667 ccaggcctgctcaaggtgctggagaccttcgtggcctgtgtcatcttcgccttcatcagc 726
|||||||||||||| |||||||| || ||||| ||||||||||||||||||||||||
Sbjct: 59242247 ccaggcctgctcaaaaggctggagatttttgtggcttgtgtcatcttcgccttcatcagc 59242188
Query: 727 aaccccaacctgtaccagcaccagccagccctggagtggtgcgtggccgtgtactccatc 786
|||||| ||||||||||||||| | |||||| |||||| ||||||||||||||||||
Sbjct: 59242187 aacccctccctgtaccagcaccatctggccctgaggtggtgtgtggccgtgtactccatc 59242128
Query: 787 tgcttcatcctggcggctgtggccatcctg 816
|||| |||||||| | | ||||||||||||
Sbjct: 59242127 tgctccatcctggtgaccgtggccatcctg 59242098
Score = 117 bits (59), Expect = 1e-23
Identities = 119/139 (85%)
Strand = Plus / Plus
Query: 263 tcctccgcctgctgcagctgatctccacctgcgtggccttctcactggtggccagcgtgg 322
|||||||||| ||||||||| |||||||||| ||||||||||| |||||||||||| |||
Sbjct: 59115164 tcctccgcctcctgcagctgctctccacctgtgtggccttctccctggtggccagcatgg 59115223
Query: 323 gcgcgtggaccggagccatgggtaactggtccatgttcacgtggtgcttctgcttcgccg 382
|| | |||| || ||| | |||||||||||||||||| ||||||||||||| | ||
Sbjct: 59115224 gcacttggatgggggccgtaagtaactggtccatgttcatctggtgcttctgctccacca 59115283
Query: 383 tgaccctcatcatcctcat 401
||||| || ||||||||||
Sbjct: 59115284 tgaccatcttcatcctcat 59115302
Score = 105 bits (53), Expect = 5e-20
Identities = 62/65 (95%)
Strand = Plus / Minus
Query: 735 cctgtaccagcaccagccagccctggagtggtgcgtggccgtgtactccatctgcttcat 794
|||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||
Sbjct: 58980172 cctgtaccagcaccagccggccctggagtggtgcgtggccgtgtatgccatctgcttcat 58980113
Query: 795 cctgg 799
|||||
Sbjct: 58980112 cctgg 58980108
Score = 105 bits (53), Expect = 5e-20
Identities = 62/65 (95%)
Strand = Plus / Plus
Query: 735 cctgtaccagcaccagccagccctggagtggtgcgtggccgtgtactccatctgcttcat 794
|||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||
Sbjct: 59043579 cctgtaccagcaccagccggccctggagtggtgcgtggccgtgtatgccatctgcttcat 59043638
Query: 795 cctgg 799
|||||
Sbjct: 59043639 cctgg 59043643
Score = 105 bits (53), Expect = 5e-20
Identities = 62/65 (95%)
Strand = Plus / Plus
Query: 735 cctgtaccagcaccagccagccctggagtggtgcgtggccgtgtactccatctgcttcat 794
|||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||
Sbjct: 59210966 cctgtaccagcaccagccggccctggagtggtgcgtggccgtgtatgccatctgcttcat 59211025
Query: 795 cctgg 799
|||||
Sbjct: 59211026 cctgg 59211030
Score = 97.6 bits (49), Expect = 1e-17
Identities = 112/133 (84%)
Strand = Plus / Minus
Query: 667 ccaggcctgctcaaggtgctggagaccttcgtggcctgtgtcatcttcgccttcatcagc 726
|||||||||||||| |||||||| || ||||| |||||||||||| |||||||||||
Sbjct: 59079609 ccaggcctgctcaaaaggctggagatttttgtggcttgtgtcatcttcaccttcatcagc 59079550
Query: 727 aaccccaacctgtaccagcaccagccagccctggagtggtgcgtggccgtgtactccatc 786
||| || ||||||| |||||| | ||| || ||||| ||||||||||||||||||
Sbjct: 59079549 aacacctccctgtactggcaccatcttgccttgaggtggtatgtggccgtgtactccatc 59079490
Query: 787 tgcttcatcctgg 799
|||||||||||||
Sbjct: 59079489 tgcttcatcctgg 59079477
Score = 95.6 bits (48), Expect = 5e-17
Identities = 218/275 (79%)
Strand = Plus / Minus
Query: 664 gtgccaggcctgctcaaggtgctggagaccttcgtggcctgtgtcatcttcgccttcatc 723
|||||||||||||| |||||||| ||||||||| | |||||||||||||||||| |
Sbjct: 59063664 gtgccaggcctgctgaaggtgctagagaccttcacgccctgtgtcatcttcgcctcatnc 59063605
Query: 724 agcaaccccaacctgtaccagcaccagccagccctggagtggtgcgtggccgtgtactcc 783
|||||| | |||||||||| | |||| ||||||| |||||| ||||| ||||| ||
Sbjct: 59063604 agcaacatctccctgtaccaggagcagctggccctggggtggtgtgtggctgtgtatgcc 59063545
Query: 784 atctgcttcatcctggcggctgtggccatcctgctgaacctgggcgactgcacgaacgtg 843
||||||||| ||||||| || | | | || ||||||||||||| ||||| || |
Sbjct: 59063544 atctgcttcctcctggcagccatagtcctcatgctgaacctgggggactgtgaatacagg 59063485
Query: 844 ctgcccatcgccttccccactttcctgtcggggctggccctgatctccgtcctcttctat 903
||||||||| |||||||| ||||| | |||||| ||||| ||| ||||| | ||||
Sbjct: 59063484 ctgcccatcctcttccccattttccagctggggctcaccctgttcttcgtccgcctctac 59063425
Query: 904 gccacggctctggtcctctggccgctttaccagtt 938
| || || |||||||||||||| || ||||||||
Sbjct: 59063424 gacagcgcactggtcctctggcctctctaccagtt 59063390
Score = 81.8 bits (41), Expect = 7e-13
Identities = 47/49 (95%)
Strand = Plus / Minus
Query: 1017 ctgggaccgacgtctggctgtggccatcctgacagccatcaacctgctg 1065
|||||||| ||| ||||||||||||||||||||||||||||||||||||
Sbjct: 59079274 ctgggaccaacgactggctgtggccatcctgacagccatcaacctgctg 59079226
Score = 81.8 bits (41), Expect = 7e-13
Identities = 47/49 (95%)
Strand = Plus / Minus
Query: 1017 ctgggaccgacgtctggctgtggccatcctgacagccatcaacctgctg 1065
|||||||| ||| ||||||||||||||||||||||||||||||||||||
Sbjct: 59241911 ctgggaccaacgactggctgtggccatcctgacagccatcaacctgctg 59241863
Score = 81.8 bits (41), Expect = 7e-13
Identities = 122/149 (81%)
Strand = Plus / Minus
Query: 263 tcctccgcctgctgcagctgatctccacctgcgtggccttctcactggtggccagcgtgg 322
|||||| ||| ||||||||| |||||||||||||||||||||| ||||||| || || |
Sbjct: 59243729 tcctccacctcctgcagctgctctccacctgcgtggccttctccctggtggtcattgtcg 59243670
Query: 323 gcgcgtggaccggagccatgggtaactggtccatgttcacgtggtgcttctgcttcgccg 382
|||| |||| | | | | ||||| |||| || ||| |||| |||||||||| | |
Sbjct: 59243669 gcgcttggaatgaggacttaaataactcgtccgtgctcatctggtacttctgcttcacag 59243610
Query: 383 tgaccctcatcatcctcatcgtcgagtta 411
||||||||||||||||||| |||||||||
Sbjct: 59243609 tgaccctcatcatcctcatagtcgagtta 59243581
Score = 77.8 bits (39), Expect = 1e-11
Identities = 54/59 (91%)
Strand = Plus / Minus
Query: 261 cctcctccgcctgctgcagctgatctccacctgcgtggccttctcactggtggccagcg 319
|||| ||||||| ||||||||| |||||||||||||| ||||||| |||||||||||||
Sbjct: 58980646 cctcttccgcctcctgcagctgctctccacctgcgtgcccttctccctggtggccagcg 58980588
Score = 77.8 bits (39), Expect = 1e-11
Identities = 54/59 (91%)
Strand = Plus / Plus
Query: 261 cctcctccgcctgctgcagctgatctccacctgcgtggccttctcactggtggccagcg 319
|||| ||||||| ||||||||| |||||||||||||| ||||||| |||||||||||||
Sbjct: 59210492 cctcttccgcctcctgcagctgctctccacctgcgtgcccttctccctggtggccagcg 59210550
Score = 71.9 bits (36), Expect = 7e-10
Identities = 63/72 (87%)
Strand = Plus / Minus
Query: 57 gccacaggcccttgagccttttccaggtgtctgccttaatccgcctccagagccggatct 116
||||| ||||| ||||||||||||| | |||| ||| |||| ||||||||||| |||||
Sbjct: 59289129 gccactggcccctgagccttttccaagcatctgacttcatccacctccagagccagatct 59289070
Query: 117 ttctctggtggg 128
||||||||||||
Sbjct: 59289069 ttctctggtggg 59289058
Score = 69.9 bits (35), Expect = 3e-09
Identities = 59/67 (88%)
Strand = Plus / Minus
Query: 999 cacctattacgtgtgcccctgggaccgacgtctggctgtggccatcctgacagccatcaa 1058
|||||| ||| ||||| ||||||||| | | ||||||||||||||||||||||||| |||
Sbjct: 58979236 cacctactacttgtgcacctgggaccaaagactggctgtggccatcctgacagccaccaa 58979177
Query: 1059 cctgctg 1065
||||||
Sbjct: 58979176 gctgctg 58979170
Score = 69.9 bits (35), Expect = 3e-09
Identities = 143/179 (79%)
Strand = Plus / Plus
Query: 887 tctccgtcctcttctatgccacggctctggtcctctggccgctttaccagttcgaccaga 946
||||||||||| |||| |||| ||||| ||||||||||| || ||||||||||| |||
Sbjct: 59100708 tctccgtcctcctctacgccagcgctctagtcctctggcctctctaccagttcgaagaga 59100767
Query: 947 agtatggcggccatccccggcggtccatggatccaggctgcggcgaccggcacacctatt 1006
||| || ||||| |||| |||||||| ||| | |||||| | || | ||||||
Sbjct: 59100768 agttgggaggccaaccccagcggtccagtgatgccggctgcagagatgaggtcacctacc 59100827
Query: 1007 acgtgtgcccctgggaccgacgtctggctgtggccatcctgacagccatcaacctgctg 1065
||||| | ||||||| || |||||||||||| |||||||||||||||||||||||
Sbjct: 59100828 ttatgtgcacttgggaccagcgactggctgtggccgtcctgacagccatcaacctgctg 59100886
Score = 63.9 bits (32), Expect = 2e-07
Identities = 44/48 (91%)
Strand = Plus / Minus
Query: 364 tggtgcttctgcttcgccgtgaccctcatcatcctcatcgtcgagtta 411
||||||||||||||| | |||||||||||||||||||| || ||||||
Sbjct: 59079900 tggtgcttctgcttcacagtgaccctcatcatcctcatagttgagtta 59079853
Score = 61.9 bits (31), Expect = 7e-07
Identities = 52/59 (88%)
Strand = Plus / Minus
Query: 1006 tacgtgtgcccctgggaccgacgtctggctgtggccatcctgacagccatcaacctgct 1064
||||||||||||||||||| || ||||||||| || ||||||| ||||||||| ||||
Sbjct: 59063316 tacgtgtgcccctgggaccagcgactggctgtgaccgtcctgactgccatcaacttgct 59063258
Score = 61.9 bits (31), Expect = 7e-07
Identities = 46/51 (90%)
Strand = Plus / Minus
Query: 263 tcctccgcctgctgcagctgatctccacctgcgtggccttctcactggtgg 313
|||||| ||| ||||||||| |||||||||| ||||||||||| |||||||
Sbjct: 59080001 tcctccacctcctgcagctgctctccacctgtgtggccttctccctggtgg 59079951
Score = 61.9 bits (31), Expect = 7e-07
Identities = 34/35 (97%)
Strand = Plus / Minus
Query: 1031 tggctgtggccatcctgacagccatcaacctgctg 1065
|||||||||||| ||||||||||||||||||||||
Sbjct: 59276831 tggctgtggccaccctgacagccatcaacctgctg 59276797
Score = 60.0 bits (30), Expect = 3e-06
Identities = 48/54 (88%)
Strand = Plus / Minus
Query: 735 cctgtaccagcaccagccagccctggagtggtgcgtggccgtgtactccatctg 788
|||||||||||| || || ||||||| |||||||||||||||||| |||||||
Sbjct: 58979500 cctgtaccagcatcatccggccctggtgtggtgcgtggccgtgtatgccatctg 58979447
Score = 60.0 bits (30), Expect = 3e-06
Identities = 48/54 (88%)
Strand = Plus / Minus
Query: 266 tccgcctgctgcagctgatctccacctgcgtggccttctcactggtggccagcg 319
||||||| ||||||||| ||| || ||||||| ||||||| |||||||||||||
Sbjct: 59036986 tccgcctcctgcagctgctcttcatctgcgtgcccttctccctggtggccagcg 59036933
Score = 60.0 bits (30), Expect = 3e-06
Identities = 60/70 (85%)
Strand = Plus / Minus
Query: 458 tcacctacgcctgctacgccgccctcttctgcctctcggcctccgtcatctaccccacca 517
||||||| ||||| || || || ||| |||| ||||| | ||||||||||||| ||||||
Sbjct: 59235820 tcacctatgcctgttatgctgctctcctctgtctctctgtctccgtcatctactccacca 59235761
Query: 518 cctacgtcca 527
||||||||||
Sbjct: 59235760 cctacgtcca 59235751
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 23,508,447
Number of extensions: 213
Number of successful extensions: 213
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 207
Number of HSP's successfully gapped: 45
Length of query: 1069
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1048
Effective length of database: 2,808,413,156
Effective search space: 2943216987488
Effective search space used: 2943216987488
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)