Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-004021
(800 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001106711.1| macrophage scavenger receptor types I and II... 372 e-103
Alignment gi|NP_776538.1| macrophage scavenger receptor types I and II is... 372 e-103
>ref|NP_001106711.1| macrophage scavenger receptor types I and II isoform 1 [Bos
taurus].
Length = 453
Score = 372 bits (955), Expect = e-103
Identities = 184/253 (72%), Positives = 216/253 (85%), Gaps = 7/253 (2%)
Frame = +3
Query: 63 MEQWHSFPDQPEDTDSCMESVKFDARSMTALLPPNPKNGPTLQEKMKSFKAALIALYLLV 242
M QW FPDQ EDTDSC ESVKFDARS+TALLPP+PKNGPTLQE+MKS+K ALI LYL+V
Sbjct: 1 MAQWDDFPDQQEDTDSCTESVKFDARSVTALLPPHPKNGPTLQERMKSYKTALITLYLIV 60
Query: 243 FVVLVPIIGVLAAHLLKWEMKNCAVGSISA-------GKGNDSENDMRFRDVVTEHMSNM 401
FVVLVPIIG++AA LLKWE KNC VGS++A GKGN SE++MRFR+ V E MSNM
Sbjct: 61 FVVLVPIIGIVAAQLLKWETKNCTVGSVNADISPSPEGKGNGSEDEMRFREAVMERMSNM 120
Query: 402 EKRIQYLSDNEANLVESEHFQNFTAMTDQRFNDVLSQLNNLLSFIQEHGNVINEISKSLI 581
E RIQYLSDNEANL+++++FQNF+ TDQRFNDVL QLN+LLS IQEH N+I +ISKSL+
Sbjct: 121 ESRIQYLSDNEANLLDAKNFQNFSITTDQRFNDVLFQLNSLLSSIQEHENIIGDISKSLV 180
Query: 582 SLNTTLLDLQLNVETLKGKVQENTFKQQEEMGKLKERVYNVSAEIMSLNEKPAHLEQEIK 761
LNTT+LDLQ ++ETL G+VQEN FKQQEEM KL+ER+YN SAEI SL+EK +LEQEIK
Sbjct: 181 GLNTTVLDLQFSIETLNGRVQENAFKQQEEMRKLEERIYNASAEIKSLDEKQVYLEQEIK 240
Query: 762 GEVKLLNNVTNDL 800
GE+KLLNN+TNDL
Sbjct: 241 GEMKLLNNITNDL 253
>ref|NP_776538.1| macrophage scavenger receptor types I and II isoform 2 [Bos
taurus].
Length = 349
Score = 372 bits (955), Expect = e-103
Identities = 184/253 (72%), Positives = 216/253 (85%), Gaps = 7/253 (2%)
Frame = +3
Query: 63 MEQWHSFPDQPEDTDSCMESVKFDARSMTALLPPNPKNGPTLQEKMKSFKAALIALYLLV 242
M QW FPDQ EDTDSC ESVKFDARS+TALLPP+PKNGPTLQE+MKS+K ALI LYL+V
Sbjct: 1 MAQWDDFPDQQEDTDSCTESVKFDARSVTALLPPHPKNGPTLQERMKSYKTALITLYLIV 60
Query: 243 FVVLVPIIGVLAAHLLKWEMKNCAVGSISA-------GKGNDSENDMRFRDVVTEHMSNM 401
FVVLVPIIG++AA LLKWE KNC VGS++A GKGN SE++MRFR+ V E MSNM
Sbjct: 61 FVVLVPIIGIVAAQLLKWETKNCTVGSVNADISPSPEGKGNGSEDEMRFREAVMERMSNM 120
Query: 402 EKRIQYLSDNEANLVESEHFQNFTAMTDQRFNDVLSQLNNLLSFIQEHGNVINEISKSLI 581
E RIQYLSDNEANL+++++FQNF+ TDQRFNDVL QLN+LLS IQEH N+I +ISKSL+
Sbjct: 121 ESRIQYLSDNEANLLDAKNFQNFSITTDQRFNDVLFQLNSLLSSIQEHENIIGDISKSLV 180
Query: 582 SLNTTLLDLQLNVETLKGKVQENTFKQQEEMGKLKERVYNVSAEIMSLNEKPAHLEQEIK 761
LNTT+LDLQ ++ETL G+VQEN FKQQEEM KL+ER+YN SAEI SL+EK +LEQEIK
Sbjct: 181 GLNTTVLDLQFSIETLNGRVQENAFKQQEEMRKLEERIYNASAEIKSLDEKQVYLEQEIK 240
Query: 762 GEVKLLNNVTNDL 800
GE+KLLNN+TNDL
Sbjct: 241 GEMKLLNNITNDL 253
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 25,421,766
Number of extensions: 573741
Number of successful extensions: 2014
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 2001
Number of HSP's successfully gapped: 2
Length of query: 266
Length of database: 17,681,374
Length adjustment: 100
Effective length of query: 166
Effective length of database: 14,372,574
Effective search space: 2385847284
Effective search space used: 2385847284
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 33 (17.3 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-004021
(800 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_848261.1| PREDICTED: similar to Macrophage scavenger rece... 362 e-100
Alignment gi|XP_540006.2| PREDICTED: similar to macrophage scavenger rece... 362 e-100
Alignment gi|XP_855632.1| PREDICTED: similar to macrophage scavenger rece... 362 e-100
>ref|XP_848261.1| PREDICTED: similar to Macrophage scavenger receptor types I and II
(Macrophage acetylated LDL receptor I and II) (CD204
antigen) isoform 2 [Canis familiaris].
Length = 454
Score = 362 bits (930), Expect = e-100
Identities = 181/254 (71%), Positives = 214/254 (84%), Gaps = 8/254 (3%)
Frame = +3
Query: 63 MEQWHSFPDQPEDTDSCMESVKFDARSMTALLPPNPKNGPTLQEKMKSFKAALIALYLLV 242
ME W FPD +D D+ ESVKFDARSMTALLP NPKNGP +QEK+KS KAALI LYLLV
Sbjct: 1 MEPWDRFPDHQDDPDNYSESVKFDARSMTALLPLNPKNGPAVQEKLKSLKAALIILYLLV 60
Query: 243 FVVLVPIIGVLAAHLLKWEMKNCAVGSISA--------GKGNDSENDMRFRDVVTEHMSN 398
FVVL+PIIG++AA LLKWEMKNC V I A GKGNDSE++MRF++VV E MSN
Sbjct: 61 FVVLIPIIGIMAAQLLKWEMKNCTVDPIKANDISQSLTGKGNDSEDEMRFQEVVMEQMSN 120
Query: 399 MEKRIQYLSDNEANLVESEHFQNFTAMTDQRFNDVLSQLNNLLSFIQEHGNVINEISKSL 578
MEKRIQY+SD EANL++SEHFQNF+ +TDQRFNDVL QL+ L+S ++ HGN+I+EISKSL
Sbjct: 121 MEKRIQYISDTEANLIDSEHFQNFSLVTDQRFNDVLLQLSTLVSSVRGHGNMIDEISKSL 180
Query: 579 ISLNTTLLDLQLNVETLKGKVQENTFKQQEEMGKLKERVYNVSAEIMSLNEKPAHLEQEI 758
I+LNTTLLDLQLN++TL KVQ+NTFKQQE+M +L+ER+YN SAEIMS+ EK +LEQEI
Sbjct: 181 INLNTTLLDLQLNIKTLNDKVQDNTFKQQEDMSRLEERLYNASAEIMSMKEKQVNLEQEI 240
Query: 759 KGEVKLLNNVTNDL 800
KGEVKLLNN+TNDL
Sbjct: 241 KGEVKLLNNITNDL 254
>ref|XP_540006.2| PREDICTED: similar to macrophage scavenger receptor 1 isoform type
3 isoform 1 [Canis familiaris].
Length = 391
Score = 362 bits (930), Expect = e-100
Identities = 181/254 (71%), Positives = 214/254 (84%), Gaps = 8/254 (3%)
Frame = +3
Query: 63 MEQWHSFPDQPEDTDSCMESVKFDARSMTALLPPNPKNGPTLQEKMKSFKAALIALYLLV 242
ME W FPD +D D+ ESVKFDARSMTALLP NPKNGP +QEK+KS KAALI LYLLV
Sbjct: 1 MEPWDRFPDHQDDPDNYSESVKFDARSMTALLPLNPKNGPAVQEKLKSLKAALIILYLLV 60
Query: 243 FVVLVPIIGVLAAHLLKWEMKNCAVGSISA--------GKGNDSENDMRFRDVVTEHMSN 398
FVVL+PIIG++AA LLKWEMKNC V I A GKGNDSE++MRF++VV E MSN
Sbjct: 61 FVVLIPIIGIMAAQLLKWEMKNCTVDPIKANDISQSLTGKGNDSEDEMRFQEVVMEQMSN 120
Query: 399 MEKRIQYLSDNEANLVESEHFQNFTAMTDQRFNDVLSQLNNLLSFIQEHGNVINEISKSL 578
MEKRIQY+SD EANL++SEHFQNF+ +TDQRFNDVL QL+ L+S ++ HGN+I+EISKSL
Sbjct: 121 MEKRIQYISDTEANLIDSEHFQNFSLVTDQRFNDVLLQLSTLVSSVRGHGNMIDEISKSL 180
Query: 579 ISLNTTLLDLQLNVETLKGKVQENTFKQQEEMGKLKERVYNVSAEIMSLNEKPAHLEQEI 758
I+LNTTLLDLQLN++TL KVQ+NTFKQQE+M +L+ER+YN SAEIMS+ EK +LEQEI
Sbjct: 181 INLNTTLLDLQLNIKTLNDKVQDNTFKQQEDMSRLEERLYNASAEIMSMKEKQVNLEQEI 240
Query: 759 KGEVKLLNNVTNDL 800
KGEVKLLNN+TNDL
Sbjct: 241 KGEVKLLNNITNDL 254
>ref|XP_855632.1| PREDICTED: similar to macrophage scavenger receptor 1 isoform type
2 isoform 3 [Canis familiaris].
Length = 361
Score = 362 bits (930), Expect = e-100
Identities = 181/254 (71%), Positives = 214/254 (84%), Gaps = 8/254 (3%)
Frame = +3
Query: 63 MEQWHSFPDQPEDTDSCMESVKFDARSMTALLPPNPKNGPTLQEKMKSFKAALIALYLLV 242
ME W FPD +D D+ ESVKFDARSMTALLP NPKNGP +QEK+KS KAALI LYLLV
Sbjct: 1 MEPWDRFPDHQDDPDNYSESVKFDARSMTALLPLNPKNGPAVQEKLKSLKAALIILYLLV 60
Query: 243 FVVLVPIIGVLAAHLLKWEMKNCAVGSISA--------GKGNDSENDMRFRDVVTEHMSN 398
FVVL+PIIG++AA LLKWEMKNC V I A GKGNDSE++MRF++VV E MSN
Sbjct: 61 FVVLIPIIGIMAAQLLKWEMKNCTVDPIKANDISQSLTGKGNDSEDEMRFQEVVMEQMSN 120
Query: 399 MEKRIQYLSDNEANLVESEHFQNFTAMTDQRFNDVLSQLNNLLSFIQEHGNVINEISKSL 578
MEKRIQY+SD EANL++SEHFQNF+ +TDQRFNDVL QL+ L+S ++ HGN+I+EISKSL
Sbjct: 121 MEKRIQYISDTEANLIDSEHFQNFSLVTDQRFNDVLLQLSTLVSSVRGHGNMIDEISKSL 180
Query: 579 ISLNTTLLDLQLNVETLKGKVQENTFKQQEEMGKLKERVYNVSAEIMSLNEKPAHLEQEI 758
I+LNTTLLDLQLN++TL KVQ+NTFKQQE+M +L+ER+YN SAEIMS+ EK +LEQEI
Sbjct: 181 INLNTTLLDLQLNIKTLNDKVQDNTFKQQEDMSRLEERLYNASAEIMSMKEKQVNLEQEI 240
Query: 759 KGEVKLLNNVTNDL 800
KGEVKLLNN+TNDL
Sbjct: 241 KGEVKLLNNITNDL 254
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 26,505,262
Number of extensions: 587479
Number of successful extensions: 2196
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 2186
Number of HSP's successfully gapped: 3
Length of query: 266
Length of database: 18,874,504
Length adjustment: 101
Effective length of query: 165
Effective length of database: 15,507,568
Effective search space: 2558748720
Effective search space used: 2558748720
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-004021
(800 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_619730.1| macrophage scavenger receptor types I and II is... 374 e-104
Alignment gi|NP_619729.1| macrophage scavenger receptor types I and II is... 374 e-104
Alignment gi|NP_002436.1| macrophage scavenger receptor types I and II is... 374 e-104
>ref|NP_619730.1| macrophage scavenger receptor types I and II isoform type 3 [Homo
sapiens].
Length = 388
Score = 374 bits (959), Expect = e-104
Identities = 185/254 (72%), Positives = 216/254 (85%), Gaps = 8/254 (3%)
Frame = +3
Query: 63 MEQWHSFPDQPEDTDSCMESVKFDARSMTALLPPNPKNGPTLQEKMKSFKAALIALYLLV 242
MEQW F +Q EDTDSC ESVKFDARSMTALLPPNPKN P+LQEK+KSFKAALIALYLLV
Sbjct: 1 MEQWDHFHNQQEDTDSCSESVKFDARSMTALLPPNPKNSPSLQEKLKSFKAALIALYLLV 60
Query: 243 FVVLVPIIGVLAAHLLKWEMKNCAVGSISA--------GKGNDSENDMRFRDVVTEHMSN 398
F VL+P+IG++AA LLKWE KNC+V S +A GKGNDSE +MRF++V EHMSN
Sbjct: 61 FAVLIPLIGIVAAQLLKWETKNCSVSSTNANDITQSLTGKGNDSEEEMRFQEVFMEHMSN 120
Query: 399 MEKRIQYLSDNEANLVESEHFQNFTAMTDQRFNDVLSQLNNLLSFIQEHGNVINEISKSL 578
MEKRIQ++ D EANL+++EHFQNF+ TDQRFND+L QL+ L S +Q HGN I+EISKSL
Sbjct: 121 MEKRIQHILDMEANLMDTEHFQNFSMTTDQRFNDILLQLSTLFSSVQGHGNAIDEISKSL 180
Query: 579 ISLNTTLLDLQLNVETLKGKVQENTFKQQEEMGKLKERVYNVSAEIMSLNEKPAHLEQEI 758
ISLNTTLLDLQLN+E L GK+QENTFKQQEE+ KL+ERVYNVSAEIM++ E+ HLEQEI
Sbjct: 181 ISLNTTLLDLQLNIENLNGKIQENTFKQQEEISKLEERVYNVSAEIMAMKEEQVHLEQEI 240
Query: 759 KGEVKLLNNVTNDL 800
KGEVK+LNN+TNDL
Sbjct: 241 KGEVKVLNNITNDL 254
>ref|NP_619729.1| macrophage scavenger receptor types I and II isoform type 1 [Homo
sapiens].
Length = 451
Score = 374 bits (959), Expect = e-104
Identities = 185/254 (72%), Positives = 216/254 (85%), Gaps = 8/254 (3%)
Frame = +3
Query: 63 MEQWHSFPDQPEDTDSCMESVKFDARSMTALLPPNPKNGPTLQEKMKSFKAALIALYLLV 242
MEQW F +Q EDTDSC ESVKFDARSMTALLPPNPKN P+LQEK+KSFKAALIALYLLV
Sbjct: 1 MEQWDHFHNQQEDTDSCSESVKFDARSMTALLPPNPKNSPSLQEKLKSFKAALIALYLLV 60
Query: 243 FVVLVPIIGVLAAHLLKWEMKNCAVGSISA--------GKGNDSENDMRFRDVVTEHMSN 398
F VL+P+IG++AA LLKWE KNC+V S +A GKGNDSE +MRF++V EHMSN
Sbjct: 61 FAVLIPLIGIVAAQLLKWETKNCSVSSTNANDITQSLTGKGNDSEEEMRFQEVFMEHMSN 120
Query: 399 MEKRIQYLSDNEANLVESEHFQNFTAMTDQRFNDVLSQLNNLLSFIQEHGNVINEISKSL 578
MEKRIQ++ D EANL+++EHFQNF+ TDQRFND+L QL+ L S +Q HGN I+EISKSL
Sbjct: 121 MEKRIQHILDMEANLMDTEHFQNFSMTTDQRFNDILLQLSTLFSSVQGHGNAIDEISKSL 180
Query: 579 ISLNTTLLDLQLNVETLKGKVQENTFKQQEEMGKLKERVYNVSAEIMSLNEKPAHLEQEI 758
ISLNTTLLDLQLN+E L GK+QENTFKQQEE+ KL+ERVYNVSAEIM++ E+ HLEQEI
Sbjct: 181 ISLNTTLLDLQLNIENLNGKIQENTFKQQEEISKLEERVYNVSAEIMAMKEEQVHLEQEI 240
Query: 759 KGEVKLLNNVTNDL 800
KGEVK+LNN+TNDL
Sbjct: 241 KGEVKVLNNITNDL 254
>ref|NP_002436.1| macrophage scavenger receptor types I and II isoform type 2 [Homo
sapiens].
Length = 358
Score = 374 bits (959), Expect = e-104
Identities = 185/254 (72%), Positives = 216/254 (85%), Gaps = 8/254 (3%)
Frame = +3
Query: 63 MEQWHSFPDQPEDTDSCMESVKFDARSMTALLPPNPKNGPTLQEKMKSFKAALIALYLLV 242
MEQW F +Q EDTDSC ESVKFDARSMTALLPPNPKN P+LQEK+KSFKAALIALYLLV
Sbjct: 1 MEQWDHFHNQQEDTDSCSESVKFDARSMTALLPPNPKNSPSLQEKLKSFKAALIALYLLV 60
Query: 243 FVVLVPIIGVLAAHLLKWEMKNCAVGSISA--------GKGNDSENDMRFRDVVTEHMSN 398
F VL+P+IG++AA LLKWE KNC+V S +A GKGNDSE +MRF++V EHMSN
Sbjct: 61 FAVLIPLIGIVAAQLLKWETKNCSVSSTNANDITQSLTGKGNDSEEEMRFQEVFMEHMSN 120
Query: 399 MEKRIQYLSDNEANLVESEHFQNFTAMTDQRFNDVLSQLNNLLSFIQEHGNVINEISKSL 578
MEKRIQ++ D EANL+++EHFQNF+ TDQRFND+L QL+ L S +Q HGN I+EISKSL
Sbjct: 121 MEKRIQHILDMEANLMDTEHFQNFSMTTDQRFNDILLQLSTLFSSVQGHGNAIDEISKSL 180
Query: 579 ISLNTTLLDLQLNVETLKGKVQENTFKQQEEMGKLKERVYNVSAEIMSLNEKPAHLEQEI 758
ISLNTTLLDLQLN+E L GK+QENTFKQQEE+ KL+ERVYNVSAEIM++ E+ HLEQEI
Sbjct: 181 ISLNTTLLDLQLNIENLNGKIQENTFKQQEEISKLEERVYNVSAEIMAMKEEQVHLEQEI 240
Query: 759 KGEVKLLNNVTNDL 800
KGEVK+LNN+TNDL
Sbjct: 241 KGEVKVLNNITNDL 254
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 26,253,241
Number of extensions: 597855
Number of successful extensions: 2086
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 2069
Number of HSP's successfully gapped: 3
Length of query: 266
Length of database: 18,297,164
Length adjustment: 101
Effective length of query: 165
Effective length of database: 14,967,800
Effective search space: 2469687000
Effective search space used: 2469687000
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-004021
(800 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001106797.1| macrophage scavenger receptor types I and II... 288 3e-78
Alignment gi|NP_112472.2| macrophage scavenger receptor types I and II is... 288 3e-78
>ref|NP_001106797.1| macrophage scavenger receptor types I and II isoform b [Mus
musculus].
Length = 458
Score = 288 bits (738), Expect = 3e-78
Identities = 145/247 (58%), Positives = 194/247 (78%), Gaps = 8/247 (3%)
Frame = +3
Query: 84 PDQPEDTDSCMESVKFDARSMTALLPPNPKNGPTLQEKMKSFKAALIALYLLVFVVLVPI 263
P + ED D ESVKFDARSMTA LP + KNGP+LQEK+KSFKAALIALYLLVF VL+P+
Sbjct: 13 PHEQEDADCSSESVKFDARSMTASLPHSTKNGPSLQEKLKSFKAALIALYLLVFAVLIPV 72
Query: 264 IGVLAAHLLKWEMKNCAVGSISAG--------KGNDSENDMRFRDVVTEHMSNMEKRIQY 419
+G++ A LL WEMKNC V S++ K N S+ +MRF ++ EHM +ME+RI+
Sbjct: 73 VGIVTAQLLNWEMKNCLVCSLNTSDTSQGPMEKENTSKVEMRFT-IIMEHMKDMEERIES 131
Query: 420 LSDNEANLVESEHFQNFTAMTDQRFNDVLSQLNNLLSFIQEHGNVINEISKSLISLNTTL 599
+S+++A+L+++E FQNF+ TDQR ND+L QLN+L+S +QEHGN ++ ISKSL SLN TL
Sbjct: 132 ISNSKADLIDTERFQNFSMATDQRLNDILLQLNSLISSVQEHGNSLDAISKSLQSLNMTL 191
Query: 600 LDLQLNVETLKGKVQENTFKQQEEMGKLKERVYNVSAEIMSLNEKPAHLEQEIKGEVKLL 779
LD+QL+ ETL +V+E+T KQQE++ KL+ERVY VSAE+ S+ E+ AH+EQE+K EV++L
Sbjct: 192 LDVQLHTETLNVRVRESTAKQQEDISKLEERVYKVSAEVQSVKEEQAHVEQEVKQEVRVL 251
Query: 780 NNVTNDL 800
NN+TNDL
Sbjct: 252 NNITNDL 258
>ref|NP_112472.2| macrophage scavenger receptor types I and II isoform a [Mus
musculus].
Length = 354
Score = 288 bits (738), Expect = 3e-78
Identities = 145/247 (58%), Positives = 194/247 (78%), Gaps = 8/247 (3%)
Frame = +3
Query: 84 PDQPEDTDSCMESVKFDARSMTALLPPNPKNGPTLQEKMKSFKAALIALYLLVFVVLVPI 263
P + ED D ESVKFDARSMTA LP + KNGP+LQEK+KSFKAALIALYLLVF VL+P+
Sbjct: 13 PHEQEDADCSSESVKFDARSMTASLPHSTKNGPSLQEKLKSFKAALIALYLLVFAVLIPV 72
Query: 264 IGVLAAHLLKWEMKNCAVGSISAG--------KGNDSENDMRFRDVVTEHMSNMEKRIQY 419
+G++ A LL WEMKNC V S++ K N S+ +MRF ++ EHM +ME+RI+
Sbjct: 73 VGIVTAQLLNWEMKNCLVCSLNTSDTSQGPMEKENTSKVEMRFT-IIMEHMKDMEERIES 131
Query: 420 LSDNEANLVESEHFQNFTAMTDQRFNDVLSQLNNLLSFIQEHGNVINEISKSLISLNTTL 599
+S+++A+L+++E FQNF+ TDQR ND+L QLN+L+S +QEHGN ++ ISKSL SLN TL
Sbjct: 132 ISNSKADLIDTERFQNFSMATDQRLNDILLQLNSLISSVQEHGNSLDAISKSLQSLNMTL 191
Query: 600 LDLQLNVETLKGKVQENTFKQQEEMGKLKERVYNVSAEIMSLNEKPAHLEQEIKGEVKLL 779
LD+QL+ ETL +V+E+T KQQE++ KL+ERVY VSAE+ S+ E+ AH+EQE+K EV++L
Sbjct: 192 LDVQLHTETLNVRVRESTAKQQEDISKLEERVYKVSAEVQSVKEEQAHVEQEVKQEVRVL 251
Query: 780 NNVTNDL 800
NN+TNDL
Sbjct: 252 NNITNDL 258
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 22,617,944
Number of extensions: 515907
Number of successful extensions: 1896
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 1890
Number of HSP's successfully gapped: 2
Length of query: 266
Length of database: 15,617,559
Length adjustment: 99
Effective length of query: 167
Effective length of database: 12,643,995
Effective search space: 2111547165
Effective search space used: 2111547165
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 33 (17.3 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-004021
(800 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001230803.1| macrophage scavenger receptor 1 [Sus scrofa]. 480 e-136
>ref|NP_001230803.1| macrophage scavenger receptor 1 [Sus scrofa].
Length = 446
Score = 480 bits (1235), Expect = e-136
Identities = 243/246 (98%), Positives = 244/246 (99%)
Frame = +3
Query: 63 MEQWHSFPDQPEDTDSCMESVKFDARSMTALLPPNPKNGPTLQEKMKSFKAALIALYLLV 242
MEQWHSFPDQPEDTDSCMESVKFDARSMTALLPPNPKNGPTLQEKMKSFKAALIALYLLV
Sbjct: 1 MEQWHSFPDQPEDTDSCMESVKFDARSMTALLPPNPKNGPTLQEKMKSFKAALIALYLLV 60
Query: 243 FVVLVPIIGVLAAHLLKWEMKNCAVGSISAGKGNDSENDMRFRDVVTEHMSNMEKRIQYL 422
FVVLVPIIGVLAAHLLKWEMKNCAVGSISAGKGNDSENDMRFRDVVTEHMSNMEKRIQYL
Sbjct: 61 FVVLVPIIGVLAAHLLKWEMKNCAVGSISAGKGNDSENDMRFRDVVTEHMSNMEKRIQYL 120
Query: 423 SDNEANLVESEHFQNFTAMTDQRFNDVLSQLNNLLSFIQEHGNVINEISKSLISLNTTLL 602
SDNEANLVESEHFQNFTAMTDQRFNDVLSQLNNLLSFIQEHGNVINEISKSLISLNTTLL
Sbjct: 121 SDNEANLVESEHFQNFTAMTDQRFNDVLSQLNNLLSFIQEHGNVINEISKSLISLNTTLL 180
Query: 603 DLQLNVETLKGKVQENTFKQQEEMGKLKERVYNVSAEIMSLNEKPAHLEQEIKGEVKLLN 782
DLQLNVETLKGKVQENTFKQQEEM KL+ERVYNVSAEIMSLNEK AHLEQEIKGEVKLLN
Sbjct: 181 DLQLNVETLKGKVQENTFKQQEEMSKLEERVYNVSAEIMSLNEKQAHLEQEIKGEVKLLN 240
Query: 783 NVTNDL 800
NVTNDL
Sbjct: 241 NVTNDL 246
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 16,260,338
Number of extensions: 362654
Number of successful extensions: 1208
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 1197
Number of HSP's successfully gapped: 1
Length of query: 266
Length of database: 11,343,932
Length adjustment: 97
Effective length of query: 169
Effective length of database: 8,928,923
Effective search space: 1508987987
Effective search space used: 1508987987
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 33 (17.3 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-004021
(800 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr17 781 0.0
Sscrofa_Chr14 105 4e-20
>Sscrofa_Chr17
|| Length = 69701581
Score = 781 bits (394), Expect = 0.0
Identities = 394/394 (100%)
Strand = Plus / Minus
Query: 276 gcagctcatctcctgaaatgggaaatgaagaattgtgcagttggctcaattagtgcagga 335
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4172254 gcagctcatctcctgaaatgggaaatgaagaattgtgcagttggctcaattagtgcagga 4172195
Query: 336 aaaggaaatgacagtgaaaatgacatgagatttcgtgacgtcgttacagaacatatgagc 395
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4172194 aaaggaaatgacagtgaaaatgacatgagatttcgtgacgtcgttacagaacatatgagc 4172135
Query: 396 aacatggagaagagaattcagtatctttcagataatgaagccaatctcgtagaatccgag 455
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4172134 aacatggagaagagaattcagtatctttcagataatgaagccaatctcgtagaatccgag 4172075
Query: 456 catttccaaaatttcactgcaatgactgatcaaagatttaatgatgtcctttcccagcta 515
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4172074 catttccaaaatttcactgcaatgactgatcaaagatttaatgatgtcctttcccagcta 4172015
Query: 516 aataacttgctttccttcattcaggaacatggaaatgtaataaatgaaatctctaagtca 575
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4172014 aataacttgctttccttcattcaggaacatggaaatgtaataaatgaaatctctaagtca 4171955
Query: 576 ttaataagtctgaacaccacattgcttgatttgcagctcaatgtcgaaacactgaaaggc 635
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4171954 ttaataagtctgaacaccacattgcttgatttgcagctcaatgtcgaaacactgaaaggc 4171895
Query: 636 aaagtccaagagaatacatttaaacaacaagagg 669
||||||||||||||||||||||||||||||||||
Sbjct: 4171894 aaagtccaagagaatacatttaaacaacaagagg 4171861
Score = 234 bits (118), Expect = 6e-59
Identities = 130/134 (97%)
Strand = Plus / Minus
Query: 667 aggagatgggtaaattaaaggagcgtgtgtacaatgtgtcagcagaaattatgtctctga 726
|||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4166518 aggagatgagtaaattagaggagcgtgtgtacaatgtgtcagcagaaattatgtctctga 4166459
Query: 727 acgagaaaccagcgcatttggaacaagaaataaaaggagaagtgaaactgttgaataacg 786
||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 4166458 acgagaaacaagcgcatttggaacaggaaataaaaggagaagtgaaactgttgaataacg 4166399
Query: 787 tcacgaatgatctt 800
||||||||||||||
Sbjct: 4166398 tcacgaatgatctt 4166385
Score = 226 bits (114), Expect = 1e-56
Identities = 114/114 (100%)
Strand = Plus / Minus
Query: 166 atcctaaaaatggcccaacgcttcaagagaaaatgaagtctttcaaagctgcactgattg 225
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4178847 atcctaaaaatggcccaacgcttcaagagaaaatgaagtctttcaaagctgcactgattg 4178788
Query: 226 ccctttatctccttgtgtttgtcgtgctggtgcctatcattggagtactggcag 279
||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4178787 ccctttatctccttgtgtttgtcgtgctggtgcctatcattggagtactggcag 4178734
Score = 216 bits (109), Expect = 1e-53
Identities = 109/109 (100%)
Strand = Plus / Minus
Query: 57 agaagtatggaacagtggcatagctttcctgatcaaccggaggacactgacagttgtatg 116
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4180561 agaagtatggaacagtggcatagctttcctgatcaaccggaggacactgacagttgtatg 4180502
Query: 117 gaatctgtcaagttcgatgctcgctcaatgacagctttgcttcctccaa 165
|||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4180501 gaatctgtcaagttcgatgctcgctcaatgacagctttgcttcctccaa 4180453
Score = 113 bits (57), Expect = 2e-22
Identities = 57/57 (100%)
Strand = Plus / Minus
Query: 2 ttcatttgttaagagagggaagtggataaatcagtgctgccgtgtttaggacacaag 58
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4191492 ttcatttgttaagagagggaagtggataaatcagtgctgccgtgtttaggacacaag 4191436
>Sscrofa_Chr14
|| Length = 153851969
Score = 105 bits (53), Expect = 4e-20
Identities = 92/104 (88%), Gaps = 2/104 (1%)
Strand = Plus / Minus
Query: 144 atgacagctttgcttcctccaaatcctaaaaatggcccaacgcttcaagagaaaatgaag 203
||||||||||||||||||| |||||||||||||||| | ||||| ||||| |||||
Sbjct: 46969368 atgacagctttgcttcctctgaatcctaaaaatggccttgcccttcagcagaaactgaag 46969309
Query: 204 tctttcaaagctgcactgattgccctttatctccttgtgtttgt 247
||| |||||||||| ||||||||||||||||||||||||||||
Sbjct: 46969308 tct--caaagctgcattgattgccctttatctccttgtgtttgt 46969267
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 28,430,184
Number of extensions: 764
Number of successful extensions: 764
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 763
Number of HSP's successfully gapped: 6
Length of query: 800
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 779
Effective length of database: 2,808,413,156
Effective search space: 2187753848524
Effective search space used: 2187753848524
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 17 (34.2 bits)
S2: 29 (58.0 bits)