Animal-Genome cDNA 20110601C-004028


Search to RefSeqBP_Rel49

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-004028
         (1124 letters)

Database: RefSeq49_BP.fasta 
           33,088 sequences; 17,681,374 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|NP_001069239.1| prostatic androgen-repressed message-1 [Bos ...   227   1e-59

>ref|NP_001069239.1| prostatic androgen-repressed message-1 [Bos taurus].
          Length = 300

 Score =  227 bits (579), Expect = 1e-59
 Identities = 142/283 (50%), Positives = 154/283 (54%)
 Frame = +1

Query: 274  MVRKTLFALFIVTAGLRVQRVSASTVLPVFLPTKITPATAVWXXXXXXXXXXXXXXXXXX 453
            MV KTLFAL I TAGLR+Q VSAS      L  + T  TA+W                  
Sbjct: 1    MVCKTLFALCIFTAGLRLQSVSASIPSTDSLLAETTTPTAIWTSSPQSPPASPTSGPSNS 60

Query: 454  XVLPIIASAPTSPPTKNVSVEAGAEEEPTSPASQSAGTETVPSSTSGGLHLTPTPEEHSP 633
             VL      PTS PTKN+S E   EE+ TSPAS   GT+  PS TSGG+HLTPTPEEHS 
Sbjct: 61   SVLLDPTPVPTSLPTKNISTEP-REEQSTSPASNWEGTD--PSPTSGGVHLTPTPEEHSS 117

Query: 634  VTPEASVPATGSQPQAEXXXXXXXXXXXXXXXXXXXXXXEVPXXXXXXXXXXXXXXXXXX 813
             TPEA VP TGSQP AE                      EVP                  
Sbjct: 118  DTPEAGVPTTGSQPPAESPTLTSPQGPASSPLPPSTSPPEVPSASISTSHSSAETSTEPT 177

Query: 814  GAPTTPKSPEEEHSSGQTPTSHATATPMPTETTSQAAVPPKGTPMLIDTETTAASPRVIM 993
            GAPTTP+S  EEHSS  TPTSHA++  +PTE T QA VPPK T +LID ETT  SP VIM
Sbjct: 178  GAPTTPESHTEEHSSTLTPTSHASSESVPTEATPQATVPPKVTCILIDMETTTTSPGVIM 237

Query: 994  XEVEHALSSGSXXXXXXXXXXXXXXXFGVATYLKIRHSSYGRL 1122
             EVEHALSSGS               FGVA YLKIRHSSYGRL
Sbjct: 238  QEVEHALSSGSIAAITVTVIAVVLLVFGVAAYLKIRHSSYGRL 280


  Database: RefSeq49_BP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 17,681,374
  Number of sequences in database:  33,088
  
Lambda     K      H
   0.308    0.122    0.348 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 37,928,313
Number of extensions: 1092050
Number of successful extensions: 6833
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 6624
Number of HSP's successfully gapped: 1
Length of query: 374
Length of database: 17,681,374
Length adjustment: 104
Effective length of query: 270
Effective length of database: 14,240,222
Effective search space: 3844859940
Effective search space used: 3844859940
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.2 bits)
S2: 35 (18.1 bits)

Search to RefSeqCP_Rel49

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-004028
         (1124 letters)

Database: RefSeq49_CP.fasta 
           33,336 sequences; 18,874,504 total letters

Searching..................................................done

 ***** No hits found ******


  Database: RefSeq49_CP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 18,874,504
  Number of sequences in database:  33,336
  
Lambda     K      H
   0.308    0.122    0.348 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 39,370,042
Number of extensions: 1091528
Number of successful extensions: 7009
Number of sequences better than 1.0e-05: 0
Number of HSP's gapped: 6852
Number of HSP's successfully gapped: 0
Length of query: 374
Length of database: 18,874,504
Length adjustment: 104
Effective length of query: 270
Effective length of database: 15,407,560
Effective search space: 4160041200
Effective search space used: 4160041200
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.2 bits)
S2: 35 (18.1 bits)

Search to RefSeqHP_Rel49

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-004028
         (1124 letters)

Database: RefSeq49_HP.fasta 
           32,964 sequences; 18,297,164 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|NP_056208.2| prostate androgen-regulated mucin-like protein ...   206   3e-53

>ref|NP_056208.2| prostate androgen-regulated mucin-like protein 1 precursor [Homo
            sapiens].
          Length = 310

 Score =  206 bits (524), Expect = 3e-53
 Identities = 138/291 (47%), Positives = 148/291 (50%), Gaps = 8/291 (2%)
 Frame = +1

Query: 274  MVRKTLFALFIVTAGLRVQRVSASTVLPVFLPTKITPATAVWXXXXXXXXXXXXXXXXXX 453
            MV KTLFAL I+TAG RVQ +  S  L V LPT I P T +W                  
Sbjct: 1    MVYKTLFALCILTAGWRVQSLPTSAPLSVSLPTNIVPPTTIWTSSPQNTDADTASPSNGT 60

Query: 454  X---VLPIIASAPTSPPTKNVSVEAGAEEEPTSPASQSAGTETVPS-----STSGGLHLT 609
                VLP+ ASAPTS   KN+S+E+  EEE TSP S   GT T PS     STSGG+HLT
Sbjct: 61   HNNSVLPVTASAPTSLLPKNISIES-REEEITSPGSNWEGTNTDPSPSGFSSTSGGVHLT 119

Query: 610  PTPEEHSPVTPEASVPATGSQPQAEXXXXXXXXXXXXXXXXXXXXXXEVPXXXXXXXXXX 789
             T EEHS  TPEA V AT SQ  AE                      EV           
Sbjct: 120  TTLEEHSSGTPEAGVAATLSQSAAEPPTLISPQAPASSPSSLSTSPPEVFSASVTTNHSS 179

Query: 790  XXXXXXXXGAPTTPKSPEEEHSSGQTPTSHATATPMPTETTSQAAVPPKGTPMLIDTETT 969
                    GAPT P+SP EE SS  TPTSHATA P+P E T    V  K    LID ETT
Sbjct: 180  TVTSTQPTGAPTAPESPTEESSSDHTPTSHATAEPVPQEKTPPTTVSGKVMCELIDMETT 239

Query: 970  AASPRVIMXEVEHALSSGSXXXXXXXXXXXXXXXFGVATYLKIRHSSYGRL 1122
               PRVIM EVEHALSSGS               FGVA YLKIRHSSYGRL
Sbjct: 240  TTFPRVIMQEVEHALSSGSIAAITVTVIAVVLLVFGVAAYLKIRHSSYGRL 290


  Database: RefSeq49_HP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 18,297,164
  Number of sequences in database:  32,964
  
Lambda     K      H
   0.308    0.122    0.348 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 38,543,031
Number of extensions: 1071475
Number of successful extensions: 7438
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 7195
Number of HSP's successfully gapped: 1
Length of query: 374
Length of database: 18,297,164
Length adjustment: 104
Effective length of query: 270
Effective length of database: 14,868,908
Effective search space: 4014605160
Effective search space used: 4014605160
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.2 bits)
S2: 35 (18.1 bits)

Search to RefSeqMP_Rel49

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-004028
         (1124 letters)

Database: RefSeq49_MP.fasta 
           30,036 sequences; 15,617,559 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|NP_663537.1| prostate androgen-regulated mucin-like protein ...   131   8e-31

>ref|NP_663537.1| prostate androgen-regulated mucin-like protein 1 homolog precursor
            [Mus musculus].
          Length = 296

 Score =  131 bits (330), Expect = 8e-31
 Identities = 110/293 (37%), Positives = 130/293 (44%), Gaps = 10/293 (3%)
 Frame = +1

Query: 274  MVRKTLFALFIVTAGLRVQRVSASTVLPVFLPTKITPATAVWXXXXXXXXXXXXXXXXXX 453
            MV K L AL I TAGLRVQ  S +  LPV L TK +   A W                  
Sbjct: 1    MVCKVLIALCIFTAGLRVQG-SPTVPLPVSLMTKSSAPVATWTTSAPHTARATTPVASAT 59

Query: 454  XVLPII----ASAPTSPPTKNVSVEAGAEEEPTSPA------SQSAGTETVPSSTSGGLH 603
                ++    AS  +  PT +       EE  TSP       S  +     PS++S G H
Sbjct: 60   HNASVLRTTAASLTSQLPTDH------REEAVTSPPLKRDVNSTDSSPAGFPSTSSDG-H 112

Query: 604  LTPTPEEHSPVTPEASVPATGSQPQAEXXXXXXXXXXXXXXXXXXXXXXEVPXXXXXXXX 783
            L PTPEEHS  +PEA+VPATGSQ                          E          
Sbjct: 113  LAPTPEEHSLGSPEATVPATGSQSPM----LLSSQAPTSATTSPATSLSESLSASVTSSH 168

Query: 784  XXXXXXXXXXGAPTTPKSPEEEHSSGQTPTSHATATPMPTETTSQAAVPPKGTPMLIDTE 963
                       AP  P SP EEHSS  TPTSH TA P+P E + Q   P K   ++ ++E
Sbjct: 169  NSTVANIQPTEAPMAPASPTEEHSSSHTPTSHVTAEPVPKEKSPQDTEPGK---VICESE 225

Query: 964  TTAASPRVIMXEVEHALSSGSXXXXXXXXXXXXXXXFGVATYLKIRHSSYGRL 1122
            TT  +P +IM EVE+ALSSGS               FG A YLKIRHSSYGRL
Sbjct: 226  TT--TPFLIMQEVENALSSGSIAAITVTVIAVVLLVFGGAAYLKIRHSSYGRL 276


  Database: RefSeq49_MP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 15,617,559
  Number of sequences in database:  30,036
  
Lambda     K      H
   0.308    0.122    0.348 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 32,502,420
Number of extensions: 893599
Number of successful extensions: 5419
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 5274
Number of HSP's successfully gapped: 2
Length of query: 374
Length of database: 15,617,559
Length adjustment: 103
Effective length of query: 271
Effective length of database: 12,523,851
Effective search space: 3393963621
Effective search space used: 3393963621
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.2 bits)
S2: 35 (18.1 bits)

Search to RefSeqSP_Rel49

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-004028
         (1124 letters)

Database: RefSeq49_SP.fasta 
           24,897 sequences; 11,343,932 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|NP_001230645.1| prostate androgen-regulated mucin-like prote...   377   e-105

>ref|NP_001230645.1| prostate androgen-regulated mucin-like protein 1 [Sus scrofa].
          Length = 303

 Score =  377 bits (967), Expect = e-105
 Identities = 206/283 (72%), Positives = 206/283 (72%)
 Frame = +1

Query: 274  MVRKTLFALFIVTAGLRVQRVSASTVLPVFLPTKITPATAVWXXXXXXXXXXXXXXXXXX 453
            MV KTLFALFIVTAGLRVQRVSASTVLPVFLPTKITPATAVW                  
Sbjct: 1    MVCKTLFALFIVTAGLRVQRVSASTVLPVFLPTKITPATAVWTSPPQSPPASPTSGTPST 60

Query: 454  XVLPIIASAPTSPPTKNVSVEAGAEEEPTSPASQSAGTETVPSSTSGGLHLTPTPEEHSP 633
             VLPIIASAPTSPPTKNVSVEAGAEEEPTSPASQSAGTETVPSSTSGGLHLTPTPEEHSP
Sbjct: 61   SVLPIIASAPTSPPTKNVSVEAGAEEEPTSPASQSAGTETVPSSTSGGLHLTPTPEEHSP 120

Query: 634  VTPEASVPATGSQPQAEXXXXXXXXXXXXXXXXXXXXXXEVPXXXXXXXXXXXXXXXXXX 813
            VTPEASVPATGSQPQAE                      EVP                  
Sbjct: 121  VTPEASVPATGSQPQAESPALTSPQAPTSSPSPPSTSPLEVPSASISTSNSSTETSTKPT 180

Query: 814  GAPTTPKSPEEEHSSGQTPTSHATATPMPTETTSQAAVPPKGTPMLIDTETTAASPRVIM 993
            GAPTTPKSPEEEHSSGQTPTSHATATPMPTETTSQAAVPPKGTPMLIDTETTAASPRVIM
Sbjct: 181  GAPTTPKSPEEEHSSGQTPTSHATATPMPTETTSQAAVPPKGTPMLIDTETTAASPRVIM 240

Query: 994  XEVEHALSSGSXXXXXXXXXXXXXXXFGVATYLKIRHSSYGRL 1122
             EVEHALSSGS               FGVA YLKIRHSSYGRL
Sbjct: 241  QEVEHALSSGSIAAITVTVIAVVLLVFGVAAYLKIRHSSYGRL 283


  Database: RefSeq49_SP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 11,343,932
  Number of sequences in database:  24,897
  
Lambda     K      H
   0.308    0.122    0.348 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 24,735,329
Number of extensions: 732517
Number of successful extensions: 4136
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 4090
Number of HSP's successfully gapped: 1
Length of query: 374
Length of database: 11,343,932
Length adjustment: 100
Effective length of query: 274
Effective length of database: 8,854,232
Effective search space: 2426059568
Effective search space used: 2426059568
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.2 bits)
S2: 34 (17.7 bits)

Search to Sscrofa10_2

BLASTN 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-004028
         (1124 letters)

Database: Sscrofa_10.2.fasta 
           4582 sequences; 2,808,509,378 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Sscrofa_Chr08                                                        1400   0.0  

>Sscrofa_Chr08 
||          Length = 148491826

 Score = 1400 bits (706), Expect = 0.0
 Identities = 708/709 (99%)
 Strand = Plus / Plus

                                                                            
Query: 314      caggactaagggtacagcgtgtgtctgcatcaacagtcttgcctgtttttcttcccacaa 373
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 75007833 caggactaagggtacagcgtgtgtctgcatcaacagtcttgcctgtttttcttcccacaa 75007892

                                                                            
Query: 374      agatcacccctgcaacggccgtctggaccagcactccgcaaagccctcctgcctccccta 433
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 75007893 agatcacccctgcaacggccgtctggaccagcactccgcaaagccctcctgcctccccta 75007952

                                                                            
Query: 434      ccagtggcacgcccagcacctcggtcctcccgattatagcatcggccccgacatctccac 493
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 75007953 ccagtggcacgcccagcacctcggtcctcccgattatagcatcggccccgacatctccac 75008012

                                                                            
Query: 494      ccactaagaacgtctctgtagaggccggagcagaggaggagcccacgagtccagcctccc 553
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 75008013 ccactaagaacgtctctgtagaggccggagcagaggaggagcccacgagtccagcctccc 75008072

                                                                            
Query: 554      agtcggcaggcacagagacagtcccctcatcaacaagcggtgggctccatttaacaccca 613
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 75008073 agtcggcaggcacagagacagtcccctcatcaacaagcggtgggctccatttaacaccca 75008132

                                                                            
Query: 614      cgccggaggaacacagcccggtcacgcccgaggccagcgtgccagctacagggtcgcaac 673
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 75008133 cgccggaggaacacagcccggtcacgcccgaggccagcgtgccagctacagggtcgcaac 75008192

                                                                            
Query: 674      cccaggccgagtctcccgcactcacctcccctcaagcgccaacctcatcaccctcgcctc 733
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 75008193 cccaggccgagtctcccgcactcacctcccctcaagcgccaacctcatcaccctcgcctc 75008252

                                                                            
Query: 734      catcaacctcaccgctggaggttccttctgcctccatcagcaccagtaacagctctacag 793
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 75008253 catcaacctcaccgctggaggttccttctgcctccatcagcaccagtaacagctctacag 75008312

                                                                            
Query: 794      aaaccagcaccaagcccacaggagccccgaccaccccgaagtccccagaggaggagcaca 853
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 75008313 aaaccagcaccaagcccacaggagccccgaccaccccgaagtccccagaggaggagcaca 75008372

                                                                            
Query: 854      gctctggacagacacccacttcacatgccacagccacgccgatgcccacagagaccacgt 913
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 75008373 gctctggacagacacccacttcacatgccacagccacgccgatgcccacagagaccacgt 75008432

                                                                            
Query: 914      cccaagcagctgtgccccccaaagggacccctatgctgatagacacagagaccaccgctg 973
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 75008433 cccaagcagctgtgccccccaaagggacccctatgctgatagacacagagaccaccgctg 75008492

                                                                 
Query: 974      cctccccccgggtgatcatgcangaagtggagcatgcactaagctcagg 1022
                |||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 75008493 cctccccccgggtgatcatgcaggaagtggagcatgcactaagctcagg 75008541



 Score =  305 bits (154), Expect = 3e-80
 Identities = 157/158 (99%)
 Strand = Plus / Plus

                                                                            
Query: 160      tcccacagtagccaaccgggcagaggaggagccgcccgcgcccggtgcgctctgtcagtc 219
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 74937887 tcccacagtagccaaccgggcagaggaggagccgcccgcgcccggtgcgctctgtcagtc 74937946

                                                                            
Query: 220      ctggcaaactctcctgccgcccgcgccgggtttggcactaagcaccacggtaccatggtc 279
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 74937947 ctggcaaactctcctgccgcccgcgccgggtttggcactaagcaccacggtaccatggtc 74938006

                                                      
Query: 280      cgcaagacgctcttcgctctcttcatcgtcacagcagg 317
                 |||||||||||||||||||||||||||||||||||||
Sbjct: 74938007 tgcaagacgctcttcgctctcttcatcgtcacagcagg 74938044



 Score =  157 bits (79), Expect = 2e-35
 Identities = 82/83 (98%)
 Strand = Plus / Plus

                                                                            
Query: 1019     caggcagcatcgccgccatcacagtgacagtcattgccgtggtcttgctggtgtttggag 1078
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 75028100 caggcagcatcgccgccatcacagtgacagtcattgccgtggtcttgctggtgtttggag 75028159

                                       
Query: 1079     ttgcaacctatctgaagatcagg 1101
                ||||| |||||||||||||||||
Sbjct: 75028160 ttgcagcctatctgaagatcagg 75028182



 Score =  155 bits (78), Expect = 6e-35
 Identities = 78/78 (100%)
 Strand = Plus / Plus

                                                                            
Query: 51       tgggatggagcagaagcgcgccgggcgccggaggatacgcagctgacggagccgcgcggc 110
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 74937778 tgggatggagcagaagcgcgccgggcgccggaggatacgcagctgacggagccgcgcggc 74937837

                                  
Query: 111      gctcgcctctcttcccct 128
                ||||||||||||||||||
Sbjct: 74937838 gctcgcctctcttcccct 74937855


  Database: Sscrofa_10.2.fasta
    Posted date:  Nov 16, 2011 10:34 AM
  Number of letters in database: 2,808,509,378
  Number of sequences in database:  4582
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 24,507,291
Number of extensions: 106
Number of successful extensions: 106
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 106
Number of HSP's successfully gapped: 4
Length of query: 1124
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1103
Effective length of database: 2,808,413,156
Effective search space: 3097679711068
Effective search space used: 3097679711068
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)