Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-004043
(1113 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001035690.1| F-box/LRR-repeat protein 12 [Bos taurus]. 491 e-158
Alignment gi|XP_002696492.1| PREDICTED: F-box and leucine-rich repeat pro... 74 2e-13
Alignment gi|XP_597007.4| PREDICTED: F-box and leucine-rich repeat protei... 74 2e-13
Alignment gi|NP_001030268.1| F-box/LRR-repeat protein 20 [Bos taurus]. 53 4e-07
Alignment gi|NP_001095522.1| S-phase kinase-associated protein 2 [Bos tau... 50 3e-06
Alignment gi|NP_001069415.1| F-box/LRR-repeat protein 14 [Bos taurus]. 50 4e-06
>ref|NP_001035690.1| F-box/LRR-repeat protein 12 [Bos taurus].
Length = 326
Score = 491 bits (1263), Expect(2) = e-158
Identities = 244/250 (97%), Positives = 247/250 (98%)
Frame = +1
Query: 226 MATFADLPDSVLLEIFSYLPVRDRIRISRVCHRWKRLVDDRWLWRHVDLTLYTMRPKVMW 405
MATFADLPDSVLLEIFSYLPVRDRIRISRVCH WK+LVDDRWLWRHVDLTLYTMRPKVMW
Sbjct: 1 MATFADLPDSVLLEIFSYLPVRDRIRISRVCHHWKKLVDDRWLWRHVDLTLYTMRPKVMW 60
Query: 406 HLLRRYMASRLHSLRMGGYLFSGSQAPQLSPALMRALGQKCPNLKRLCLHVANLSMVPIT 585
HLLRRYMASRLHSLRMGGYLFSGSQAPQLSPALMRALGQKCPNLKRLCLHVANLSMVPIT
Sbjct: 61 HLLRRYMASRLHSLRMGGYLFSGSQAPQLSPALMRALGQKCPNLKRLCLHVANLSMVPIT 120
Query: 586 SLPSTLRTLELHSCEISMAWLLKEQDPTVLPLLECIVLDRVPAFRDEHLQGLTRFRALRS 765
SLP TLRTLELHSCEISMAWL KEQDPTVLPLLECIVLDRVPAFRDEHLQGLTRFRALRS
Sbjct: 121 SLPCTLRTLELHSCEISMAWLHKEQDPTVLPLLECIVLDRVPAFRDEHLQGLTRFRALRS 180
Query: 766 LVLGGTYRVTETGLDMGLQELSYLQRLEVLGCTLSADSTLLAISRHLRDVRKIRLTVRGL 945
LVLGGTYRVTETGLDMGLQEL+YLQRLEVLGCTLSADSTLLAISRHLRDVRKIRLTVRGL
Sbjct: 181 LVLGGTYRVTETGLDMGLQELNYLQRLEVLGCTLSADSTLLAISRHLRDVRKIRLTVRGL 240
Query: 946 SAPGLAVLEG 975
SAPGL+VLEG
Sbjct: 241 SAPGLSVLEG 250
Score = 88.6 bits (218), Expect(2) = e-158
Identities = 40/46 (86%), Positives = 44/46 (95%)
Frame = +2
Query: 974 GMPALESLCLLGPLITPEMPTPAEILSSCLHMPKLRVLDLQGLGWE 1111
GMPALESLCLLGPL+TPEMP+P EIL+SCL MPKLRVL+LQGLGWE
Sbjct: 250 GMPALESLCLLGPLVTPEMPSPQEILASCLTMPKLRVLELQGLGWE 295
>ref|XP_002696492.1| PREDICTED: F-box and leucine-rich repeat protein 7 [Bos taurus].
Length = 482
Score = 74.3 bits (181), Expect = 2e-13
Identities = 67/252 (26%), Positives = 112/252 (44%), Gaps = 12/252 (4%)
Frame = +1
Query: 229 ATFADLPDSVLLEIFSYLPVRDRIRISRVCHRWKRLVDDRWLWRHVDLTLYTMRPKVMWH 408
A+ LPD ++++FS+LP R +RVC RW L D LWR + LT T+
Sbjct: 103 ASIERLPDHAMVQVFSFLPTNQLCRCARVCRRWYNLAWDPRLWRTIRLTGETINVDRALK 162
Query: 409 LLRRYMASRLHSLRMGGYLFSGSQAPQLSPALMRALGQKCPNLKRL----CLHVANLSMV 576
+L R + ++ + S S +L+ + + Q CP L+RL C +++N ++
Sbjct: 163 VLTRRLCQDTPNVCLMLETVSVSGCRRLTDRGLYTIAQCCPELRRLEVSGCYNISNEAVF 222
Query: 577 PITSLPSTLRTLELHSC-EISMAWLLKEQDPTVLPL----LECIVLDRVPAF--RDEHLQ 735
+ SL L L++ C +++ L +E + PL + LD F DE L
Sbjct: 223 DVVSLCPNLEHLDVSGCSKVTCISLTREASIKLSPLHGKQISIRYLDMTDCFVLEDEGLH 282
Query: 736 GL-TRFRALRSLVLGGTYRVTETGLDMGLQELSYLQRLEVLGCTLSADSTLLAISRHLRD 912
+ L L L R+T+ GL + + ++ L V C +D LR+
Sbjct: 283 TIAAHCTQLTHLYLRRCVRLTDEGLRYLMIYCTSIKELSVSDCRFVSDF-------GLRE 335
Query: 913 VRKIRLTVRGLS 948
+ K+ +R LS
Sbjct: 336 IAKLESRLRYLS 347
>ref|XP_597007.4| PREDICTED: F-box and leucine-rich repeat protein 7 [Bos taurus].
Length = 482
Score = 74.3 bits (181), Expect = 2e-13
Identities = 67/252 (26%), Positives = 112/252 (44%), Gaps = 12/252 (4%)
Frame = +1
Query: 229 ATFADLPDSVLLEIFSYLPVRDRIRISRVCHRWKRLVDDRWLWRHVDLTLYTMRPKVMWH 408
A+ LPD ++++FS+LP R +RVC RW L D LWR + LT T+
Sbjct: 103 ASIERLPDHAMVQVFSFLPTNQLCRCARVCRRWYNLAWDPRLWRTIRLTGETINVDRALK 162
Query: 409 LLRRYMASRLHSLRMGGYLFSGSQAPQLSPALMRALGQKCPNLKRL----CLHVANLSMV 576
+L R + ++ + S S +L+ + + Q CP L+RL C +++N ++
Sbjct: 163 VLTRRLCQDTPNVCLMLETVSVSGCRRLTDRGLYTIAQCCPELRRLEVSGCYNISNEAVF 222
Query: 577 PITSLPSTLRTLELHSC-EISMAWLLKEQDPTVLPL----LECIVLDRVPAF--RDEHLQ 735
+ SL L L++ C +++ L +E + PL + LD F DE L
Sbjct: 223 DVVSLCPNLEHLDVSGCSKVTCISLTREASIKLSPLHGKQISIRYLDMTDCFVLEDEGLH 282
Query: 736 GL-TRFRALRSLVLGGTYRVTETGLDMGLQELSYLQRLEVLGCTLSADSTLLAISRHLRD 912
+ L L L R+T+ GL + + ++ L V C +D LR+
Sbjct: 283 TIAAHCTQLTHLYLRRCVRLTDEGLRYLMIYCTSIKELSVSDCRFVSDF-------GLRE 335
Query: 913 VRKIRLTVRGLS 948
+ K+ +R LS
Sbjct: 336 IAKLESRLRYLS 347
>ref|NP_001030268.1| F-box/LRR-repeat protein 20 [Bos taurus].
Length = 438
Score = 53.1 bits (126), Expect = 4e-07
Identities = 65/261 (24%), Positives = 103/261 (39%), Gaps = 18/261 (6%)
Frame = +1
Query: 244 LPDSVLLEIFSYLPVRDRIRISRVCHRWKRLVDDRWLWRHVDLTLY--TMRPKVMWHLLR 417
LP +LL IFS+L V R ++V W L D W+ +DL + + +V+ ++ +
Sbjct: 30 LPKELLLRIFSFLDVVTLCRCAQVSRAWNVLALDGSNWQRIDLFDFQRDIEGRVVENISK 89
Query: 418 RYMASRLHSLRMGGYLFSGSQAPQLSPALMRALGQKCPNLKRL----CLHVANLSMVPIT 585
R L L + G L G A +R Q C N++ L C + + ++
Sbjct: 90 R-CGGFLRKLSLRGCLGVGDNA-------LRTFAQNCRNIEVLNLNGCTKTTDATCTSLS 141
Query: 586 SLPSTLRTLELHSCEISMAWLLKEQDPTVLPLLECIVLDRVPAFRDEHLQGLTR-FRALR 762
S LR L+L SC LK PLLE + + + +Q L R L+
Sbjct: 142 KFCSKLRHLDLASCTSITNMSLKALSEG-CPLLEQLNISWCDQVTKDGIQALVRGCGGLK 200
Query: 763 SLVLGGTYRVTETGLDMGLQELSYLQRLEVLGCTLSADSTLLAISRHLRDVRKI------ 924
+L L G ++ + L L L + C D L+ I R ++ +
Sbjct: 201 ALFLKGCTQLEDEALKYIGAHCPELVTLNLQTCLQITDEGLITICRGCHKLQSLCASGCS 260
Query: 925 -----RLTVRGLSAPGLAVLE 972
L G + P L +LE
Sbjct: 261 NITDAILNALGQNCPRLRILE 281
>ref|NP_001095522.1| S-phase kinase-associated protein 2 [Bos taurus].
Length = 424
Score = 50.4 bits (119), Expect = 3e-06
Identities = 26/59 (44%), Positives = 35/59 (59%)
Frame = +1
Query: 244 LPDSVLLEIFSYLPVRDRIRISRVCHRWKRLVDDRWLWRHVDLTLYTMRPKVMWHLLRR 420
LPD +LL IFS L + + +++S VC RW L D LW+ VDL + P V+ LL R
Sbjct: 100 LPDELLLGIFSCLCLPELLKVSSVCKRWYHLAFDESLWQTVDLAGRNLYPDVVGRLLSR 158
>ref|NP_001069415.1| F-box/LRR-repeat protein 14 [Bos taurus].
Length = 400
Score = 50.1 bits (118), Expect = 4e-06
Identities = 68/258 (26%), Positives = 107/258 (41%), Gaps = 33/258 (12%)
Frame = +1
Query: 256 VLLEIFSYLPVRDRIRISRVCHRWKRLVDDRWLWRHVDLTLYTMRP-------------- 393
+L IF YL VRD+ R ++VC W+ + +WR V+ L+ R
Sbjct: 12 LLAMIFGYLDVRDKGRAAQVCTAWRDAAYHKSVWRGVEAKLHLRRANPSLFPSLQARGIR 71
Query: 394 KVMWHLLRRYMA------SRLHSLRMGG-YLFSGSQAPQLSPALMRALGQKCPNLKRLCL 552
+V LRR ++ + + SL + G Y + + L A ++ +G LC
Sbjct: 72 RVQILSLRRSLSYVIQGMANIESLNLSGCYNLTDN---GLGHAFVQEIGSLRALNLSLCK 128
Query: 553 HVANLSMVPITSLPSTLRTLELHSCE-------ISMAWLLKEQDPTVLPLLECIVLDRVP 711
+ + S+ I L LEL C + +AW L Q L L C L V
Sbjct: 129 QITDSSLGRIAQYLKGLEVLELGGCSNITNTGLLLIAWGL--QRLKSLNLRSCRHLSDVG 186
Query: 712 AFRDEHLQGLTRFRA-----LRSLVLGGTYRVTETGLDMGLQELSYLQRLEVLGCTLSAD 876
HL G+TR A L L L ++T+ L + L+ L+ L + C +D
Sbjct: 187 I---GHLAGMTRSAAEGCLGLEQLTLQDCQKLTDLSLKHISRGLTGLRLLNLSFCGGISD 243
Query: 877 STLLAISRHLRDVRKIRL 930
+ LL +S H+ +R + L
Sbjct: 244 AGLLHLS-HMGSLRSLNL 260
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 42,144,374
Number of extensions: 1313895
Number of successful extensions: 11016
Number of sequences better than 1.0e-05: 6
Number of HSP's gapped: 10239
Number of HSP's successfully gapped: 7
Length of query: 371
Length of database: 17,681,374
Length adjustment: 104
Effective length of query: 267
Effective length of database: 14,240,222
Effective search space: 3802139274
Effective search space used: 3802139274
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-004043
(1113 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_542082.2| PREDICTED: similar to F-box/LRR-repeat protein ... 492 e-160
Alignment gi|XP_546380.2| PREDICTED: similar to F-box/LRR-repeat protein ... 65 2e-10
Alignment gi|XP_850563.1| PREDICTED: similar to F-box and leucine-rich re... 53 5e-07
Alignment gi|XP_546346.2| PREDICTED: similar to S-phase kinase-associated... 52 1e-06
Alignment gi|XP_543882.1| PREDICTED: similar to F-box/LRR-repeat protein ... 50 4e-06
>ref|XP_542082.2| PREDICTED: similar to F-box/LRR-repeat protein 12 (F-box and
leucine-rich repeat protein 12) (F-box protein FBL12)
[Canis familiaris].
Length = 448
Score = 492 bits (1266), Expect(2) = e-160
Identities = 246/257 (95%), Positives = 251/257 (97%)
Frame = +1
Query: 205 EMRVGGMMATFADLPDSVLLEIFSYLPVRDRIRISRVCHRWKRLVDDRWLWRHVDLTLYT 384
E+ VG +MAT ADLPDSVLLEIFSYLPVRDRIRISRVCHRWKRLVDDRWLWRHVDLTLYT
Sbjct: 116 EVGVGRIMATLADLPDSVLLEIFSYLPVRDRIRISRVCHRWKRLVDDRWLWRHVDLTLYT 175
Query: 385 MRPKVMWHLLRRYMASRLHSLRMGGYLFSGSQAPQLSPALMRALGQKCPNLKRLCLHVAN 564
MRPKVMWHLLRRYMASRL+SLRMGGYLFSGSQAPQLSPALMRALGQKCPNLKRLCLHVA+
Sbjct: 176 MRPKVMWHLLRRYMASRLYSLRMGGYLFSGSQAPQLSPALMRALGQKCPNLKRLCLHVAD 235
Query: 565 LSMVPITSLPSTLRTLELHSCEISMAWLLKEQDPTVLPLLECIVLDRVPAFRDEHLQGLT 744
LSMVPITSLP TLRTLELHSCEISMAWLLKEQDPTVLPLLECIVLDRVPAFRDEHLQGLT
Sbjct: 236 LSMVPITSLPCTLRTLELHSCEISMAWLLKEQDPTVLPLLECIVLDRVPAFRDEHLQGLT 295
Query: 745 RFRALRSLVLGGTYRVTETGLDMGLQELSYLQRLEVLGCTLSADSTLLAISRHLRDVRKI 924
RF ALRSLVLGGTYRVTETGLD GLQELSYLQRLEVLGCTLSADSTLLAISRHLRDVRKI
Sbjct: 296 RFHALRSLVLGGTYRVTETGLDAGLQELSYLQRLEVLGCTLSADSTLLAISRHLRDVRKI 355
Query: 925 RLTVRGLSAPGLAVLEG 975
RLTVRGLSAPGL+VLEG
Sbjct: 356 RLTVRGLSAPGLSVLEG 372
Score = 92.0 bits (227), Expect(2) = e-160
Identities = 43/46 (93%), Positives = 45/46 (97%)
Frame = +2
Query: 974 GMPALESLCLLGPLITPEMPTPAEILSSCLHMPKLRVLDLQGLGWE 1111
GMPALESLCLLGPLITPEMP+PAEILSSCL MPKLRVL+LQGLGWE
Sbjct: 372 GMPALESLCLLGPLITPEMPSPAEILSSCLTMPKLRVLELQGLGWE 417
>ref|XP_546380.2| PREDICTED: similar to F-box/LRR-repeat protein 7 (F-box and
leucine-rich repeat protein 7) (F-box protein FBL6/FBL7)
[Canis familiaris].
Length = 633
Score = 64.7 bits (156), Expect = 2e-10
Identities = 65/247 (26%), Positives = 107/247 (43%), Gaps = 12/247 (4%)
Frame = +1
Query: 244 LPDSVLLEIFSYLPVRDRIRISRVCHRWKRLVDDRWLWRHVDLTLYTMRPKVMWHLLRRY 423
LPD+ L+ +FS+L R +RVC RW + D LWR + L + +L R
Sbjct: 259 LPDACLVRVFSFLRTDQLCRCARVCRRWYNVAWDPRLWRAIRLAGAGLHADRALRVLTRR 318
Query: 424 MASRLHSLRMGGYLFSGSQAPQLSPALMRALGQKCPNLKRL----CLHVANLSMVPITSL 591
+ ++ + + S +L+ + L Q CP L+RL C +++N ++ + SL
Sbjct: 319 LCQDTPNVCLLLETVAVSGCRRLTDRGLYTLAQCCPELRRLEVAGCHNISNEAVFDVVSL 378
Query: 592 PSTLRTLELHSC-EISMAWLLKEQDPTVLPL----LECIVLDRVPAF--RDEHLQGL-TR 747
L L++ C +++ L +E + PL + LD F DE L +
Sbjct: 379 CPNLEHLDVSGCSKVTCISLTREASIQLSPLHGKQISIRYLDMTDCFALEDEGLHTIAAH 438
Query: 748 FRALRSLVLGGTYRVTETGLDMGLQELSYLQRLEVLGCTLSADSTLLAISRHLRDVRKIR 927
L L L R+T+ GL + S L+ L V C +D LR++ K+
Sbjct: 439 CTRLTHLYLRRCARLTDEGLRYLVIYCSSLRELSVSDCRCISDF-------GLREIAKLE 491
Query: 928 LTVRGLS 948
+R LS
Sbjct: 492 ARLRYLS 498
>ref|XP_850563.1| PREDICTED: similar to F-box and leucine-rich repeat protein 20
[Canis familiaris].
Length = 524
Score = 53.1 bits (126), Expect = 5e-07
Identities = 65/261 (24%), Positives = 103/261 (39%), Gaps = 18/261 (6%)
Frame = +1
Query: 244 LPDSVLLEIFSYLPVRDRIRISRVCHRWKRLVDDRWLWRHVDLTLY--TMRPKVMWHLLR 417
LP +LL IFS+L V R ++V W L D W+ +DL + + +V+ ++ +
Sbjct: 116 LPKELLLRIFSFLDVVTLCRCAQVSRAWNVLALDGSNWQRIDLFDFQRDIEGRVVENISK 175
Query: 418 RYMASRLHSLRMGGYLFSGSQAPQLSPALMRALGQKCPNLKRL----CLHVANLSMVPIT 585
R L L + G L G A +R Q C N++ L C + + ++
Sbjct: 176 R-CGGFLRKLSLRGCLGVGDNA-------LRTFAQNCRNIEVLNLNGCTKTTDATCTSLS 227
Query: 586 SLPSTLRTLELHSCEISMAWLLKEQDPTVLPLLECIVLDRVPAFRDEHLQGLTR-FRALR 762
S LR L+L SC LK PLLE + + + +Q L R L+
Sbjct: 228 KFCSKLRHLDLASCTSITNMSLKALSEG-CPLLEQLNISWCDQVTKDGIQALVRGCGGLK 286
Query: 763 SLVLGGTYRVTETGLDMGLQELSYLQRLEVLGCTLSADSTLLAISRHLRDVRKI------ 924
+L L G ++ + L L L + C D L+ I R ++ +
Sbjct: 287 ALFLKGCTQLEDEALKYIGAHCPELVTLNLQTCLQITDEGLITICRGCHKLQSLCASGCS 346
Query: 925 -----RLTVRGLSAPGLAVLE 972
L G + P L +LE
Sbjct: 347 NITDAILNALGQNCPRLRILE 367
>ref|XP_546346.2| PREDICTED: similar to S-phase kinase-associated protein 2 isoform 1
[Canis familiaris].
Length = 749
Score = 52.0 bits (123), Expect = 1e-06
Identities = 26/59 (44%), Positives = 36/59 (61%)
Frame = +1
Query: 244 LPDSVLLEIFSYLPVRDRIRISRVCHRWKRLVDDRWLWRHVDLTLYTMRPKVMWHLLRR 420
LPD +LL IFS L + + +++S VC RW L D LW+ +DLT + P V+ LL R
Sbjct: 425 LPDELLLGIFSCLCLPELLKVSSVCKRWYHLAFDESLWQTLDLTGRNLHPDVIGRLLSR 483
>ref|XP_543882.1| PREDICTED: similar to F-box/LRR-repeat protein 14 (F-box and
leucine-rich repeat protein 14) [Canis familiaris].
Length = 400
Score = 50.1 bits (118), Expect = 4e-06
Identities = 68/258 (26%), Positives = 107/258 (41%), Gaps = 33/258 (12%)
Frame = +1
Query: 256 VLLEIFSYLPVRDRIRISRVCHRWKRLVDDRWLWRHVDLTLYTMRP-------------- 393
+L IF YL VRD+ R ++VC W+ + +WR V+ L+ R
Sbjct: 12 LLAMIFGYLDVRDKGRAAQVCTAWRDAAYHKSVWRGVEAKLHLRRANPSLFPSLQARGIR 71
Query: 394 KVMWHLLRRYMA------SRLHSLRMGG-YLFSGSQAPQLSPALMRALGQKCPNLKRLCL 552
+V LRR ++ + + SL + G Y + + L A ++ +G LC
Sbjct: 72 RVQILSLRRSLSYVIQGMANIESLNLSGCYNLTDN---GLGHAFVQEIGSLRALNLSLCK 128
Query: 553 HVANLSMVPITSLPSTLRTLELHSCE-------ISMAWLLKEQDPTVLPLLECIVLDRVP 711
+ + S+ I L LEL C + +AW L Q L L C L V
Sbjct: 129 QITDSSLGRIAQYLKGLEVLELGGCSNITNTGLLLIAWGL--QRLKSLNLRSCRHLSDVG 186
Query: 712 AFRDEHLQGLTRFRA-----LRSLVLGGTYRVTETGLDMGLQELSYLQRLEVLGCTLSAD 876
HL G+TR A L L L ++T+ L + L+ L+ L + C +D
Sbjct: 187 I---GHLAGMTRSAAEGCLGLEQLTLQDCQKLTDLSLKHISRGLTGLRLLNLSFCGGISD 243
Query: 877 STLLAISRHLRDVRKIRL 930
+ LL +S H+ +R + L
Sbjct: 244 AGLLHLS-HMGSLRSLNL 260
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 43,904,192
Number of extensions: 1353502
Number of successful extensions: 11003
Number of sequences better than 1.0e-05: 5
Number of HSP's gapped: 10361
Number of HSP's successfully gapped: 6
Length of query: 371
Length of database: 18,874,504
Length adjustment: 104
Effective length of query: 267
Effective length of database: 15,407,560
Effective search space: 4113818520
Effective search space used: 4113818520
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-004043
(1113 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_060173.1| F-box/LRR-repeat protein 12 [Homo sapiens]. 486 e-157
Alignment gi|NP_036436.1| F-box/LRR-repeat protein 7 [Homo sapiens]. 72 9e-13
Alignment gi|NP_116264.2| F-box/LRR-repeat protein 20 isoform 1 [Homo sap... 53 4e-07
Alignment gi|NP_116026.1| S-phase kinase-associated protein 2 isoform 2 [... 52 8e-07
Alignment gi|NP_005974.2| S-phase kinase-associated protein 2 isoform 1 [... 52 8e-07
Alignment gi|NP_001156787.2| F-box/LRR-repeat protein 17 [Homo sapiens]. 52 1e-06
Alignment gi|NP_689654.1| F-box/LRR-repeat protein 14 [Homo sapiens]. 50 4e-06
Alignment gi|NP_036289.3| F-box/LRR-repeat protein 2 isoform 1 [Homo sapi... 50 5e-06
>ref|NP_060173.1| F-box/LRR-repeat protein 12 [Homo sapiens].
Length = 326
Score = 486 bits (1251), Expect(2) = e-157
Identities = 242/250 (96%), Positives = 246/250 (98%)
Frame = +1
Query: 226 MATFADLPDSVLLEIFSYLPVRDRIRISRVCHRWKRLVDDRWLWRHVDLTLYTMRPKVMW 405
MAT +LPDSVLLEIFSYLPVRDRIRISRVCHRWKRLVDDRWLWRHVDLTLYTMRPKVMW
Sbjct: 1 MATLVELPDSVLLEIFSYLPVRDRIRISRVCHRWKRLVDDRWLWRHVDLTLYTMRPKVMW 60
Query: 406 HLLRRYMASRLHSLRMGGYLFSGSQAPQLSPALMRALGQKCPNLKRLCLHVANLSMVPIT 585
HLLRRYMASRLHSLRMGGYLFSGSQAPQLSPAL+RALGQKCPNLKRLCLHVA+LSMVPIT
Sbjct: 61 HLLRRYMASRLHSLRMGGYLFSGSQAPQLSPALLRALGQKCPNLKRLCLHVADLSMVPIT 120
Query: 586 SLPSTLRTLELHSCEISMAWLLKEQDPTVLPLLECIVLDRVPAFRDEHLQGLTRFRALRS 765
SLPSTLRTLELHSCEISMAWL K+QDPTVLPLLECIVLDRVPAFRDEHLQGLTRFRALRS
Sbjct: 121 SLPSTLRTLELHSCEISMAWLHKQQDPTVLPLLECIVLDRVPAFRDEHLQGLTRFRALRS 180
Query: 766 LVLGGTYRVTETGLDMGLQELSYLQRLEVLGCTLSADSTLLAISRHLRDVRKIRLTVRGL 945
LVLGGTYRVTETGLD GLQELSYLQRLEVLGCTLSADSTLLAISRHLRDVRKIRLTVRGL
Sbjct: 181 LVLGGTYRVTETGLDAGLQELSYLQRLEVLGCTLSADSTLLAISRHLRDVRKIRLTVRGL 240
Query: 946 SAPGLAVLEG 975
SAPGLAVLEG
Sbjct: 241 SAPGLAVLEG 250
Score = 87.8 bits (216), Expect(2) = e-157
Identities = 40/46 (86%), Positives = 43/46 (93%)
Frame = +2
Query: 974 GMPALESLCLLGPLITPEMPTPAEILSSCLHMPKLRVLDLQGLGWE 1111
GMPALESLCL GPL+TPEMP+P EILSSCL MPKLRVL+LQGLGWE
Sbjct: 250 GMPALESLCLQGPLVTPEMPSPTEILSSCLTMPKLRVLELQGLGWE 295
>ref|NP_036436.1| F-box/LRR-repeat protein 7 [Homo sapiens].
Length = 491
Score = 72.0 bits (175), Expect = 9e-13
Identities = 67/252 (26%), Positives = 112/252 (44%), Gaps = 12/252 (4%)
Frame = +1
Query: 229 ATFADLPDSVLLEIFSYLPVRDRIRISRVCHRWKRLVDDRWLWRHVDLTLYTMRPKVMWH 408
A+ LPD +++IFS+LP R +RVC RW L D LWR + LT T+
Sbjct: 112 ASIDRLPDHSMVQIFSFLPTNQLCRCARVCRRWYNLAWDPRLWRTIRLTGETINVDRALK 171
Query: 409 LLRRYMASRLHSLRMGGYLFSGSQAPQLSPALMRALGQKCPNLKRL----CLHVANLSMV 576
+L R + ++ + + S +L+ + + Q CP L+RL C +++N ++
Sbjct: 172 VLTRRLCQDTPNVCLMLETVTVSGCRRLTDRGLYTIAQCCPELRRLEVSGCYNISNEAVF 231
Query: 577 PITSLPSTLRTLELHSC-EISMAWLLKEQDPTVLPL----LECIVLDRVPAF--RDEHLQ 735
+ SL L L++ C +++ L +E + PL + LD F DE L
Sbjct: 232 DVVSLCPNLEHLDVSGCSKVTCISLTREASIKLSPLHGKQISIRYLDMTDCFVLEDEGLH 291
Query: 736 GL-TRFRALRSLVLGGTYRVTETGLDMGLQELSYLQRLEVLGCTLSADSTLLAISRHLRD 912
+ L L L R+T+ GL + + ++ L V C +D LR+
Sbjct: 292 TIAAHCTQLTHLYLRRCVRLTDEGLRYLVIYCASIKELSVSDCRFVSDF-------GLRE 344
Query: 913 VRKIRLTVRGLS 948
+ K+ +R LS
Sbjct: 345 IAKLESRLRYLS 356
>ref|NP_116264.2| F-box/LRR-repeat protein 20 isoform 1 [Homo sapiens].
Length = 436
Score = 53.1 bits (126), Expect = 4e-07
Identities = 65/261 (24%), Positives = 103/261 (39%), Gaps = 18/261 (6%)
Frame = +1
Query: 244 LPDSVLLEIFSYLPVRDRIRISRVCHRWKRLVDDRWLWRHVDLTLY--TMRPKVMWHLLR 417
LP +LL IFS+L V R ++V W L D W+ +DL + + +V+ ++ +
Sbjct: 28 LPKELLLRIFSFLDVVTLCRCAQVSRAWNVLALDGSNWQRIDLFDFQRDIEGRVVENISK 87
Query: 418 RYMASRLHSLRMGGYLFSGSQAPQLSPALMRALGQKCPNLKRL----CLHVANLSMVPIT 585
R L L + G L G A +R Q C N++ L C + + ++
Sbjct: 88 R-CGGFLRKLSLRGCLGVGDNA-------LRTFAQNCRNIEVLNLNGCTKTTDATCTSLS 139
Query: 586 SLPSTLRTLELHSCEISMAWLLKEQDPTVLPLLECIVLDRVPAFRDEHLQGLTR-FRALR 762
S LR L+L SC LK PLLE + + + +Q L R L+
Sbjct: 140 KFCSKLRHLDLASCTSITNMSLKALSEG-CPLLEQLNISWCDQVTKDGIQALVRGCGGLK 198
Query: 763 SLVLGGTYRVTETGLDMGLQELSYLQRLEVLGCTLSADSTLLAISRHLRDVRKI------ 924
+L L G ++ + L L L + C D L+ I R ++ +
Sbjct: 199 ALFLKGCTQLEDEALKYIGAHCPELVTLNLQTCLQITDEGLITICRGCHKLQSLCASGCS 258
Query: 925 -----RLTVRGLSAPGLAVLE 972
L G + P L +LE
Sbjct: 259 NITDAILNALGQNCPRLRILE 279
>ref|NP_116026.1| S-phase kinase-associated protein 2 isoform 2 [Homo sapiens].
Length = 410
Score = 52.4 bits (124), Expect = 8e-07
Identities = 26/57 (45%), Positives = 35/57 (61%)
Frame = +1
Query: 244 LPDSVLLEIFSYLPVRDRIRISRVCHRWKRLVDDRWLWRHVDLTLYTMRPKVMWHLL 414
LPD +LL IFS L + + +++S VC RW RL D LW+ +DLT + P V LL
Sbjct: 100 LPDELLLGIFSCLCLPELLKVSGVCKRWYRLASDESLWQTLDLTGKNLHPDVTGRLL 156
>ref|NP_005974.2| S-phase kinase-associated protein 2 isoform 1 [Homo sapiens].
Length = 424
Score = 52.4 bits (124), Expect = 8e-07
Identities = 26/57 (45%), Positives = 35/57 (61%)
Frame = +1
Query: 244 LPDSVLLEIFSYLPVRDRIRISRVCHRWKRLVDDRWLWRHVDLTLYTMRPKVMWHLL 414
LPD +LL IFS L + + +++S VC RW RL D LW+ +DLT + P V LL
Sbjct: 100 LPDELLLGIFSCLCLPELLKVSGVCKRWYRLASDESLWQTLDLTGKNLHPDVTGRLL 156
>ref|NP_001156787.2| F-box/LRR-repeat protein 17 [Homo sapiens].
Length = 701
Score = 51.6 bits (122), Expect = 1e-06
Identities = 57/233 (24%), Positives = 104/233 (44%), Gaps = 6/233 (2%)
Frame = +1
Query: 244 LPDSVLLEIFSYLPVRDR-IRISRVCHRWKRLVDDRWLWRHVDLTLYTMRPKVMWHLLRR 420
LP S+LL+IFS L + +R + S VC W+ L D W+ +DL + R +V LL +
Sbjct: 324 LPPSILLKIFSNLSLDERCLSASLVCKYWRDLCLDFQFWKQLDL---SSRQQVTDELLEK 380
Query: 421 YMASRLHSLRMGGYLFSGSQAPQLSPALMRALGQKCPNLKRL----CLHVANLSMVPITS 588
+ASR ++ + S +S + L KCP L R C +++ S++ + S
Sbjct: 381 -IASRSQNI----IEINISDCRSMSDNGVCVLAFKCPGLLRYTAYRCKQLSDTSIIAVAS 435
Query: 589 LPSTLRTLELHSCEISMAWLLKEQDPTVLPLLECIVLDRVPAFRDEHLQGL-TRFRALRS 765
C PLL+ + + DE L+ L ++ R L+
Sbjct: 436 -----------HC----------------PLLQKVHVGNQDKLTDEGLKQLGSKCRELKD 468
Query: 766 LVLGGTYRVTETGLDMGLQELSYLQRLEVLGCTLSADSTLLAISRHLRDVRKI 924
+ G Y++++ G+ + + LQR+ + L D ++ A + H +++ +
Sbjct: 469 IHFGQCYKISDEGMIVIAKGCLKLQRIYMQENKLVTDQSVKAFAEHCPELQYV 521
>ref|NP_689654.1| F-box/LRR-repeat protein 14 [Homo sapiens].
Length = 418
Score = 50.1 bits (118), Expect = 4e-06
Identities = 68/258 (26%), Positives = 107/258 (41%), Gaps = 33/258 (12%)
Frame = +1
Query: 256 VLLEIFSYLPVRDRIRISRVCHRWKRLVDDRWLWRHVDLTLYTMRP-------------- 393
+L IF YL VRD+ R ++VC W+ + +WR V+ L+ R
Sbjct: 12 LLAMIFGYLDVRDKGRAAQVCTAWRDAAYHKSVWRGVEAKLHLRRANPSLFPSLQARGIR 71
Query: 394 KVMWHLLRRYMA------SRLHSLRMGG-YLFSGSQAPQLSPALMRALGQKCPNLKRLCL 552
+V LRR ++ + + SL + G Y + + L A ++ +G LC
Sbjct: 72 RVQILSLRRSLSYVIQGMANIESLNLSGCYNLTDN---GLGHAFVQEIGSLRALNLSLCK 128
Query: 553 HVANLSMVPITSLPSTLRTLELHSCE-------ISMAWLLKEQDPTVLPLLECIVLDRVP 711
+ + S+ I L LEL C + +AW L Q L L C L V
Sbjct: 129 QITDSSLGRIAQYLKGLEVLELGGCSNITNTGLLLIAWGL--QRLKSLNLRSCRHLSDVG 186
Query: 712 AFRDEHLQGLTRFRA-----LRSLVLGGTYRVTETGLDMGLQELSYLQRLEVLGCTLSAD 876
HL G+TR A L L L ++T+ L + L+ L+ L + C +D
Sbjct: 187 I---GHLAGMTRSAAEGCLGLEQLTLQDCQKLTDLSLKHISRGLTGLRLLNLSFCGGISD 243
Query: 877 STLLAISRHLRDVRKIRL 930
+ LL +S H+ +R + L
Sbjct: 244 AGLLHLS-HMGSLRSLNL 260
>ref|NP_036289.3| F-box/LRR-repeat protein 2 isoform 1 [Homo sapiens].
Length = 423
Score = 49.7 bits (117), Expect = 5e-06
Identities = 59/261 (22%), Positives = 107/261 (40%), Gaps = 18/261 (6%)
Frame = +1
Query: 244 LPDSVLLEIFSYLPVRDRIRISRVCHRWKRLVDDRWLWRHVDLTLYTMRPKVMWHLLRRY 423
LP +LL IFS+L + R +++ W L D W+ +D L+ + V ++
Sbjct: 15 LPKELLLRIFSFLDIVTLCRCAQISKAWNILALDGSNWQRID--LFNFQTDVEGRVVENI 72
Query: 424 MASRLHSLRMGGYL--FSGSQAPQLSPALMRALGQKCPNLKRL----CLHVANLSMVPIT 585
S R GG+L S + + ++ Q C N++ L C + + + ++
Sbjct: 73 ------SKRCGGFLRKLSLRGCIGVGDSSLKTFAQNCRNIEHLNLNGCTKITDSTCYSLS 126
Query: 586 SLPSTLRTLELHSCEISMAWLLKEQDPTVLPLLECIVLDRVPAFRDEHLQGLTR-FRALR 762
S L+ L+L SC +S+ + LE + L + ++ L R R L+
Sbjct: 127 RFCSKLKHLDLTSC-VSITNSSLKGISEGCRNLEYLNLSWCDQITKDGIEALVRGCRGLK 185
Query: 763 SLVLGGTYRVTETGLDMGLQELSYLQRLEVLGCTLSADSTLLAISRHLRDVRKI------ 924
+L+L G ++ + L L L + C+ D ++ I R ++ +
Sbjct: 186 ALLLRGCTQLEDEALKHIQNYCHELVSLNLQSCSRITDEGVVQICRGCHRLQALCLSGCS 245
Query: 925 -----RLTVRGLSAPGLAVLE 972
LT GL+ P L +LE
Sbjct: 246 NLTDASLTALGLNCPRLQILE 266
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 42,968,863
Number of extensions: 1318536
Number of successful extensions: 10646
Number of sequences better than 1.0e-05: 8
Number of HSP's gapped: 9945
Number of HSP's successfully gapped: 10
Length of query: 371
Length of database: 18,297,164
Length adjustment: 104
Effective length of query: 267
Effective length of database: 14,868,908
Effective search space: 3969998436
Effective search space used: 3969998436
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-004043
(1113 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_038939.2| F-box/LRR-repeat protein 12 isoform a [Mus musc... 471 e-151
Alignment gi|NP_001002846.1| F-box/LRR-repeat protein 12 isoform b [Mus m... 367 e-119
Alignment gi|NP_795933.2| F-box/LRR-repeat protein 7 [Mus musculus]. 71 1e-12
Alignment gi|NP_056609.1| F-box/LRR-repeat protein 17 [Mus musculus]. 56 4e-08
Alignment gi|NP_082425.1| F-box/LRR-repeat protein 20 [Mus musculus]. 53 4e-07
Alignment gi|NP_848739.1| F-box/LRR-repeat protein 2 [Mus musculus]. 52 6e-07
Alignment gi|NP_663443.1| S-phase kinase-associated protein 2 isoform b [... 52 1e-06
Alignment gi|NP_038815.1| S-phase kinase-associated protein 2 isoform a [... 52 1e-06
Alignment gi|NP_598701.2| F-box/LRR-repeat protein 14 [Mus musculus]. 50 3e-06
>ref|NP_038939.2| F-box/LRR-repeat protein 12 isoform a [Mus musculus].
Length = 326
Score = 471 bits (1213), Expect(2) = e-151
Identities = 237/250 (94%), Positives = 239/250 (95%)
Frame = +1
Query: 226 MATFADLPDSVLLEIFSYLPVRDRIRISRVCHRWKRLVDDRWLWRHVDLTLYTMRPKVMW 405
MAT DLPD VLLEIFSYLPVRDRIRISRVCHRWKRLVDDRWLWRHVDLTLYTMRPKVMW
Sbjct: 1 MATLFDLPDLVLLEIFSYLPVRDRIRISRVCHRWKRLVDDRWLWRHVDLTLYTMRPKVMW 60
Query: 406 HLLRRYMASRLHSLRMGGYLFSGSQAPQLSPALMRALGQKCPNLKRLCLHVANLSMVPIT 585
HLLRRYMASRL+SLRMGGYLFSGSQAPQLSPALMRALGQKCPNLKRLCLHVA+LSMVPIT
Sbjct: 61 HLLRRYMASRLYSLRMGGYLFSGSQAPQLSPALMRALGQKCPNLKRLCLHVADLSMVPIT 120
Query: 586 SLPSTLRTLELHSCEISMAWLLKEQDPTVLPLLECIVLDRVPAFRDEHLQGLTRFRALRS 765
SLPSTLRTLELHSCEISM WL KEQDPTVLPLLECIVLDRVPAFRDEHLQGLTRFRALRS
Sbjct: 121 SLPSTLRTLELHSCEISMIWLQKEQDPTVLPLLECIVLDRVPAFRDEHLQGLTRFRALRS 180
Query: 766 LVLGGTYRVTETGLDMGLQELSYLQRLEVLGCTLSADSTLLAISRHLRDVRKIRLTVRGL 945
LVLGGTYRVTETGLD LQELSYLQRLEVLGCTLSADSTLLAISRHLRDVRKIRLTV GL
Sbjct: 181 LVLGGTYRVTETGLDASLQELSYLQRLEVLGCTLSADSTLLAISRHLRDVRKIRLTVGGL 240
Query: 946 SAPGLAVLEG 975
SA GL LEG
Sbjct: 241 SAQGLVFLEG 250
Score = 82.0 bits (201), Expect(2) = e-151
Identities = 36/46 (78%), Positives = 41/46 (89%)
Frame = +2
Query: 974 GMPALESLCLLGPLITPEMPTPAEILSSCLHMPKLRVLDLQGLGWE 1111
GMP LESLC GPLITP+MPTP +I+SSCL MPKLRVL++QGLGWE
Sbjct: 250 GMPVLESLCFQGPLITPDMPTPTQIVSSCLTMPKLRVLEVQGLGWE 295
>ref|NP_001002846.1| F-box/LRR-repeat protein 12 isoform b [Mus musculus].
Length = 273
Score = 367 bits (943), Expect(2) = e-119
Identities = 187/197 (94%), Positives = 189/197 (95%)
Frame = +1
Query: 385 MRPKVMWHLLRRYMASRLHSLRMGGYLFSGSQAPQLSPALMRALGQKCPNLKRLCLHVAN 564
MRPKVMWHLLRRYMASRL+SLRMGGYLFSGSQAPQLSPALMRALGQKCPNLKRLCLHVA+
Sbjct: 1 MRPKVMWHLLRRYMASRLYSLRMGGYLFSGSQAPQLSPALMRALGQKCPNLKRLCLHVAD 60
Query: 565 LSMVPITSLPSTLRTLELHSCEISMAWLLKEQDPTVLPLLECIVLDRVPAFRDEHLQGLT 744
LSMVPITSLPSTLRTLELHSCEISM WL KEQDPTVLPLLECIVLDRVPAFRDEHLQGLT
Sbjct: 61 LSMVPITSLPSTLRTLELHSCEISMIWLQKEQDPTVLPLLECIVLDRVPAFRDEHLQGLT 120
Query: 745 RFRALRSLVLGGTYRVTETGLDMGLQELSYLQRLEVLGCTLSADSTLLAISRHLRDVRKI 924
RFRALRSLVLGGTYRVTETGLD LQELSYLQRLEVLGCTLSADSTLLAISRHLRDVRKI
Sbjct: 121 RFRALRSLVLGGTYRVTETGLDASLQELSYLQRLEVLGCTLSADSTLLAISRHLRDVRKI 180
Query: 925 RLTVRGLSAPGLAVLEG 975
RLTV GLSA GL LEG
Sbjct: 181 RLTVGGLSAQGLVFLEG 197
Score = 82.0 bits (201), Expect(2) = e-119
Identities = 36/46 (78%), Positives = 41/46 (89%)
Frame = +2
Query: 974 GMPALESLCLLGPLITPEMPTPAEILSSCLHMPKLRVLDLQGLGWE 1111
GMP LESLC GPLITP+MPTP +I+SSCL MPKLRVL++QGLGWE
Sbjct: 197 GMPVLESLCFQGPLITPDMPTPTQIVSSCLTMPKLRVLEVQGLGWE 242
>ref|NP_795933.2| F-box/LRR-repeat protein 7 [Mus musculus].
Length = 491
Score = 71.2 bits (173), Expect = 1e-12
Identities = 69/254 (27%), Positives = 114/254 (44%), Gaps = 14/254 (5%)
Frame = +1
Query: 229 ATFADLPDSVLLEIFSYLPVRDRIRISRVCHRWKRLVDDRWLWRHVDLTLYTMRPKVMWH 408
A+ LPD +++IFS+LP R +RVC RW L D LWR + LT T+
Sbjct: 112 ASIDRLPDHSMVQIFSFLPTNQLCRCARVCRRWYNLAWDPRLWRTIRLTGETINVDRALK 171
Query: 409 LLRRYMASRLHS--LRMGGYLFSGSQAPQLSPALMRALGQKCPNLKRL----CLHVANLS 570
+L R + + L + + SG + +L+ + + Q CP L+RL C +++N +
Sbjct: 172 VLTRRLCQDTPNVCLMLETVIVSGCR--RLTDRGLYTIAQCCPELRRLEVSGCYNISNEA 229
Query: 571 MVPITSLPSTLRTLELHSC-EISMAWLLKEQDPTVLPL----LECIVLDRVPAF--RDEH 729
+ + SL L L++ C +++ L +E + PL + LD F DE
Sbjct: 230 VFDVVSLCPNLEHLDVSGCSKVTCISLTREASIKLSPLHGKQISIRYLDMTDCFVLEDEG 289
Query: 730 LQGL-TRFRALRSLVLGGTYRVTETGLDMGLQELSYLQRLEVLGCTLSADSTLLAISRHL 906
L + L L L R+T+ GL + + ++ L V C +D L
Sbjct: 290 LHTIAAHCTQLTHLYLRRCVRLTDEGLRYLVIYCTSIKELSVSDCRFVSDF-------GL 342
Query: 907 RDVRKIRLTVRGLS 948
R++ K+ +R LS
Sbjct: 343 REIAKLESRLRYLS 356
>ref|NP_056609.1| F-box/LRR-repeat protein 17 [Mus musculus].
Length = 701
Score = 56.2 bits (134), Expect = 4e-08
Identities = 59/233 (25%), Positives = 105/233 (45%), Gaps = 6/233 (2%)
Frame = +1
Query: 244 LPDSVLLEIFSYLPVRDR-IRISRVCHRWKRLVDDRWLWRHVDLTLYTMRPKVMWHLLRR 420
LP S+LL+IFS L + +R + S VC W+ L D W+ +DL+ R +V LL +
Sbjct: 324 LPPSILLKIFSNLSLNERCLSASLVCKYWRDLCLDFQFWKQLDLS---SRQQVTDELLEK 380
Query: 421 YMASRLHSLRMGGYLFSGSQAPQLSPALMRALGQKCPNLKRL----CLHVANLSMVPITS 588
+ASR ++ + S LS + + L KCP L R C +++ S++ + S
Sbjct: 381 -IASRSQNI----IEINISDCRSLSDSGVCVLAFKCPGLLRYTAYRCKQLSDTSIIAVAS 435
Query: 589 LPSTLRTLELHSCEISMAWLLKEQDPTVLPLLECIVLDRVPAFRDEHLQGL-TRFRALRS 765
C PLL+ + + DE L+ L +R R L+
Sbjct: 436 -----------HC----------------PLLQKVHVGNQDKLTDEGLKQLGSRCRELKD 468
Query: 766 LVLGGTYRVTETGLDMGLQELSYLQRLEVLGCTLSADSTLLAISRHLRDVRKI 924
+ G Y++++ G+ + + LQR+ + L D ++ A + H +++ +
Sbjct: 469 IHFGQCYKISDEGMIVIAKSCLKLQRIYMQENKLVTDQSVKAFAEHCPELQYV 521
>ref|NP_082425.1| F-box/LRR-repeat protein 20 [Mus musculus].
Length = 436
Score = 53.1 bits (126), Expect = 4e-07
Identities = 65/261 (24%), Positives = 103/261 (39%), Gaps = 18/261 (6%)
Frame = +1
Query: 244 LPDSVLLEIFSYLPVRDRIRISRVCHRWKRLVDDRWLWRHVDLTLY--TMRPKVMWHLLR 417
LP +LL IFS+L V R ++V W L D W+ +DL + + +V+ ++ +
Sbjct: 28 LPKELLLRIFSFLDVVTLCRCAQVSRAWNVLALDGSNWQRIDLFDFQRDIEGRVVENISK 87
Query: 418 RYMASRLHSLRMGGYLFSGSQAPQLSPALMRALGQKCPNLKRL----CLHVANLSMVPIT 585
R L L + G L G A +R Q C N++ L C + + ++
Sbjct: 88 R-CGGFLRKLSLRGCLGVGDNA-------LRTFAQNCRNIEVLSLNGCTKTTDATCTSLS 139
Query: 586 SLPSTLRTLELHSCEISMAWLLKEQDPTVLPLLECIVLDRVPAFRDEHLQGLTR-FRALR 762
S LR L+L SC LK PLLE + + + +Q L R L+
Sbjct: 140 KFCSKLRHLDLASCTSITNMSLKALSEG-CPLLEQLNISWCDQVTKDGIQALVRGCGGLK 198
Query: 763 SLVLGGTYRVTETGLDMGLQELSYLQRLEVLGCTLSADSTLLAISRHLRDVRKI------ 924
+L L G ++ + L L L + C D L+ I R ++ +
Sbjct: 199 ALFLKGCTQLEDEALKYIGAHCPELVTLNLQTCLQITDEGLITICRGCHKLQSLCASGCS 258
Query: 925 -----RLTVRGLSAPGLAVLE 972
L G + P L +LE
Sbjct: 259 NITDAILNALGQNCPRLRILE 279
>ref|NP_848739.1| F-box/LRR-repeat protein 2 [Mus musculus].
Length = 423
Score = 52.4 bits (124), Expect = 6e-07
Identities = 62/261 (23%), Positives = 107/261 (40%), Gaps = 18/261 (6%)
Frame = +1
Query: 244 LPDSVLLEIFSYLPVRDRIRISRVCHRWKRLVDDRWLWRHVDLTLYTMRPKVMWHLLRRY 423
LP +LL IFS+L + R +++ W L D W+ VD L+ + V ++
Sbjct: 15 LPKELLLRIFSFLDIVTLCRCAQISKAWNILALDGSNWQRVD--LFNFQTDVEGRVVENI 72
Query: 424 MASRLHSLRMGGYL--FSGSQAPQLSPALMRALGQKCPNLKRL----CLHVANLSMVPIT 585
S R GG+L S + + ++ Q C N++ L C + + + ++
Sbjct: 73 ------SKRCGGFLRKLSLRGCIGVGDSSLKTFAQNCRNIEHLNLNGCTKITDSTCYSLS 126
Query: 586 SLPSTLRTLELHSCEISMAWLLKEQDPTVLPLLECIVLDRVPAFRDEHLQGLTR-FRALR 762
S L+ L+L SC +S+ + LE + L E ++ L R R L+
Sbjct: 127 RFCSKLKHLDLTSC-VSVTNSSLKGISEGCRNLEYLNLSWCDQITKEGIEALVRGCRGLK 185
Query: 763 SLVLGGTYRVTETGLDMGLQELSYLQRLEVLGCTLSADSTLLAISRHLRDVRKI------ 924
+L+L G ++ + L L L + C+ D ++ I R ++ +
Sbjct: 186 ALLLRGCTQLEDEALKHIQNHCHELVSLNLQSCSRITDDGVVQICRGCHRLQALCLSGCS 245
Query: 925 -----RLTVRGLSAPGLAVLE 972
LT GL+ P L VLE
Sbjct: 246 NLTDASLTALGLNCPRLQVLE 266
>ref|NP_663443.1| S-phase kinase-associated protein 2 isoform b [Mus musculus].
Length = 354
Score = 51.6 bits (122), Expect = 1e-06
Identities = 41/142 (28%), Positives = 63/142 (44%), Gaps = 11/142 (7%)
Frame = +1
Query: 244 LPDSVLLEIFSYLPVRDRIRISRVCHRWKRLVDDRWLWRHVDLTLYTMRPKVMWHLLRR- 420
LPD +LL IFS L + + +R+S VC RW RL D LW+ +DL + P V LL R
Sbjct: 100 LPDELLLGIFSCLCLPELLRVSGVCKRWYRLSLDESLWQSLDLAGKNLHPDVTVRLLSRG 159
Query: 421 ---YMASRLHSLRMGGYLFSGSQAPQ-------LSPALMRALGQKCPNLKRLCLHVANLS 570
+ R + G FS + ++ + + + +C L+ L L LS
Sbjct: 160 VVAFRCPRSFMEQPLGESFSSFRVQHMDLSNSVINVSNLHKILSECSKLQNLSLEGLQLS 219
Query: 571 MVPITSLPSTLRTLELHSCEIS 636
+ +L + L+ C S
Sbjct: 220 DPIVKTLAQNENLVRLNLCGCS 241
>ref|NP_038815.1| S-phase kinase-associated protein 2 isoform a [Mus musculus].
Length = 424
Score = 51.6 bits (122), Expect = 1e-06
Identities = 41/142 (28%), Positives = 63/142 (44%), Gaps = 11/142 (7%)
Frame = +1
Query: 244 LPDSVLLEIFSYLPVRDRIRISRVCHRWKRLVDDRWLWRHVDLTLYTMRPKVMWHLLRR- 420
LPD +LL IFS L + + +R+S VC RW RL D LW+ +DL + P V LL R
Sbjct: 100 LPDELLLGIFSCLCLPELLRVSGVCKRWYRLSLDESLWQSLDLAGKNLHPDVTVRLLSRG 159
Query: 421 ---YMASRLHSLRMGGYLFSGSQAPQ-------LSPALMRALGQKCPNLKRLCLHVANLS 570
+ R + G FS + ++ + + + +C L+ L L LS
Sbjct: 160 VVAFRCPRSFMEQPLGESFSSFRVQHMDLSNSVINVSNLHKILSECSKLQNLSLEGLQLS 219
Query: 571 MVPITSLPSTLRTLELHSCEIS 636
+ +L + L+ C S
Sbjct: 220 DPIVKTLAQNENLVRLNLCGCS 241
>ref|NP_598701.2| F-box/LRR-repeat protein 14 [Mus musculus].
Length = 400
Score = 50.1 bits (118), Expect = 3e-06
Identities = 68/258 (26%), Positives = 107/258 (41%), Gaps = 33/258 (12%)
Frame = +1
Query: 256 VLLEIFSYLPVRDRIRISRVCHRWKRLVDDRWLWRHVDLTLYTMRP-------------- 393
+L IF YL VRD+ R ++VC W+ + +WR V+ L+ R
Sbjct: 12 LLAMIFGYLDVRDKGRAAQVCTAWRDAAYHKSVWRGVEAKLHLRRANPSLFPSLQARGIR 71
Query: 394 KVMWHLLRRYMA------SRLHSLRMGG-YLFSGSQAPQLSPALMRALGQKCPNLKRLCL 552
+V LRR ++ + + SL + G Y + + L A ++ +G LC
Sbjct: 72 RVQILSLRRSLSYVIQGMANIESLNLSGCYNLTDN---GLGHAFVQEIGSLRALNLSLCK 128
Query: 553 HVANLSMVPITSLPSTLRTLELHSCE-------ISMAWLLKEQDPTVLPLLECIVLDRVP 711
+ + S+ I L LEL C + +AW L Q L L C L V
Sbjct: 129 QITDSSLGRIAQYLKGLEVLELGGCSNITNTGLLLIAWGL--QRLKSLNLRSCRHLSDVG 186
Query: 712 AFRDEHLQGLTRFRA-----LRSLVLGGTYRVTETGLDMGLQELSYLQRLEVLGCTLSAD 876
HL G+TR A L L L ++T+ L + L+ L+ L + C +D
Sbjct: 187 I---GHLAGMTRSAAEGCLGLEQLTLQDCQKLTDLSLKHISRGLTGLRLLNLSFCGGISD 243
Query: 877 STLLAISRHLRDVRKIRL 930
+ LL +S H+ +R + L
Sbjct: 244 AGLLHLS-HMGSLRSLNL 260
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 36,160,494
Number of extensions: 1080900
Number of successful extensions: 8660
Number of sequences better than 1.0e-05: 9
Number of HSP's gapped: 8028
Number of HSP's successfully gapped: 11
Length of query: 371
Length of database: 15,617,559
Length adjustment: 103
Effective length of query: 268
Effective length of database: 12,523,851
Effective search space: 3356392068
Effective search space used: 3356392068
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-004043
(1113 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_003123279.2| PREDICTED: f-box/LRR-repeat protein 12-like ... 390 e-130
Alignment gi|XP_003133898.1| PREDICTED: f-box/LRR-repeat protein 7 [Sus s... 74 1e-13
Alignment gi|NP_001165226.1| S-phase kinase-associated protein 2 [Sus scr... 51 1e-06
Alignment gi|XP_003126989.1| PREDICTED: f-box/LRR-repeat protein 8-like [... 51 1e-06
>ref|XP_003123279.2| PREDICTED: f-box/LRR-repeat protein 12-like [Sus scrofa].
Length = 273
Score = 390 bits (1001), Expect(2) = e-130
Identities = 197/197 (100%), Positives = 197/197 (100%)
Frame = +1
Query: 385 MRPKVMWHLLRRYMASRLHSLRMGGYLFSGSQAPQLSPALMRALGQKCPNLKRLCLHVAN 564
MRPKVMWHLLRRYMASRLHSLRMGGYLFSGSQAPQLSPALMRALGQKCPNLKRLCLHVAN
Sbjct: 1 MRPKVMWHLLRRYMASRLHSLRMGGYLFSGSQAPQLSPALMRALGQKCPNLKRLCLHVAN 60
Query: 565 LSMVPITSLPSTLRTLELHSCEISMAWLLKEQDPTVLPLLECIVLDRVPAFRDEHLQGLT 744
LSMVPITSLPSTLRTLELHSCEISMAWLLKEQDPTVLPLLECIVLDRVPAFRDEHLQGLT
Sbjct: 61 LSMVPITSLPSTLRTLELHSCEISMAWLLKEQDPTVLPLLECIVLDRVPAFRDEHLQGLT 120
Query: 745 RFRALRSLVLGGTYRVTETGLDMGLQELSYLQRLEVLGCTLSADSTLLAISRHLRDVRKI 924
RFRALRSLVLGGTYRVTETGLDMGLQELSYLQRLEVLGCTLSADSTLLAISRHLRDVRKI
Sbjct: 121 RFRALRSLVLGGTYRVTETGLDMGLQELSYLQRLEVLGCTLSADSTLLAISRHLRDVRKI 180
Query: 925 RLTVRGLSAPGLAVLEG 975
RLTVRGLSAPGLAVLEG
Sbjct: 181 RLTVRGLSAPGLAVLEG 197
Score = 93.6 bits (231), Expect(2) = e-130
Identities = 44/46 (95%), Positives = 45/46 (97%)
Frame = +2
Query: 974 GMPALESLCLLGPLITPEMPTPAEILSSCLHMPKLRVLDLQGLGWE 1111
GMPALESLCLLGPLITPEMPTPAEILSSCL MPKLRVL+LQGLGWE
Sbjct: 197 GMPALESLCLLGPLITPEMPTPAEILSSCLTMPKLRVLELQGLGWE 242
>ref|XP_003133898.1| PREDICTED: f-box/LRR-repeat protein 7 [Sus scrofa].
Length = 450
Score = 74.3 bits (181), Expect = 1e-13
Identities = 67/252 (26%), Positives = 112/252 (44%), Gaps = 12/252 (4%)
Frame = +1
Query: 229 ATFADLPDSVLLEIFSYLPVRDRIRISRVCHRWKRLVDDRWLWRHVDLTLYTMRPKVMWH 408
A+ LPD ++++FS+LP R +RVC RW L D LWR + LT T+
Sbjct: 71 ASIERLPDHAMVQVFSFLPTNQLCRCARVCRRWYNLAWDPRLWRTIRLTGETINVDRALK 130
Query: 409 LLRRYMASRLHSLRMGGYLFSGSQAPQLSPALMRALGQKCPNLKRL----CLHVANLSMV 576
+L R + ++ + S S +L+ + + Q CP L+RL C +++N ++
Sbjct: 131 VLTRRLCQDTPNVCLMLETVSVSGCRRLTDRGLYTIAQCCPELRRLEVSGCYNISNEAVF 190
Query: 577 PITSLPSTLRTLELHSC-EISMAWLLKEQDPTVLPL----LECIVLDRVPAF--RDEHLQ 735
+ SL L L++ C +++ L +E + PL + LD F DE L
Sbjct: 191 DVVSLCPNLEHLDVSGCSKVTCISLTREASIKLSPLHGKQISIRYLDMTDCFVLEDEGLH 250
Query: 736 GL-TRFRALRSLVLGGTYRVTETGLDMGLQELSYLQRLEVLGCTLSADSTLLAISRHLRD 912
+ L L L R+T+ GL + + ++ L V C +D LR+
Sbjct: 251 TIAAHCTQLTHLYLRRCVRLTDEGLRYLMIYCTSIKELSVSDCRFVSDF-------GLRE 303
Query: 913 VRKIRLTVRGLS 948
+ K+ +R LS
Sbjct: 304 IAKLESRLRYLS 315
>ref|NP_001165226.1| S-phase kinase-associated protein 2 [Sus scrofa].
Length = 424
Score = 51.2 bits (121), Expect = 1e-06
Identities = 26/59 (44%), Positives = 35/59 (59%)
Frame = +1
Query: 244 LPDSVLLEIFSYLPVRDRIRISRVCHRWKRLVDDRWLWRHVDLTLYTMRPKVMWHLLRR 420
LPD +LL IFS L + + +++S VC RW L D LW+ +DLT + P V LL R
Sbjct: 100 LPDELLLGIFSCLCLPELLKVSSVCKRWYHLAFDESLWQTLDLTGRNLHPDVTGRLLSR 158
>ref|XP_003126989.1| PREDICTED: f-box/LRR-repeat protein 8-like [Sus scrofa].
Length = 374
Score = 50.8 bits (120), Expect = 1e-06
Identities = 35/109 (32%), Positives = 54/109 (49%), Gaps = 6/109 (5%)
Frame = +1
Query: 244 LPDSVLLEIFSYLPVRDRIRISRVCHRWKRLVDDRWLWRHV----DLTLYTMRPKVMWHL 411
LP+ VL+ IF +LP+RDR +RVC W +W + D L +M P ++
Sbjct: 8 LPEEVLVLIFRHLPLRDRAAAARVCRAWAAAATCSAVWHNTNISCDCELKSMLPPYLYAC 67
Query: 412 LRRYMASRLHSLRMGGYLFSGSQAP--QLSPALMRALGQKCPNLKRLCL 552
L +H+LR+ F S+ P +++ L+ AL P L+ LCL
Sbjct: 68 L-----DHVHNLRLE---FEPSREPSRRVATELLTALAGHTPGLRGLCL 108
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 27,259,530
Number of extensions: 852046
Number of successful extensions: 7231
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 6697
Number of HSP's successfully gapped: 5
Length of query: 371
Length of database: 11,343,932
Length adjustment: 100
Effective length of query: 271
Effective length of database: 8,854,232
Effective search space: 2399496872
Effective search space used: 2399496872
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-004043
(1113 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr02 1384 0.0
>Sscrofa_Chr02
|| Length = 162569375
Score = 1384 bits (698), Expect = 0.0
Identities = 723/730 (99%), Gaps = 1/730 (0%)
Strand = Plus / Minus
Query: 384 gatgcggccaaaagtcatgtggcatctccttcgccggtacatggcctcccggctccattc 443
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 68921965 gatgcggccaaaagtcatgtggcatctccttcgccggtacatggcctcccggctccattc 68921906
Query: 444 cctgcggatgggtggctacctgttctcaggctcccaggctccccagctgtcccctgccct 503
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 68921905 cctgcggatgggtggctacctgttctcaggctcccaggctccccagctgtcccctgccct 68921846
Query: 504 gatgagagccctgggccagaagtgccccaacctgaagcgcctctgcctacatgtggccaa 563
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 68921845 gatgagagccctgggccagaagtgccccaacctgaagcgcctctgcctacatgtggccaa 68921786
Query: 564 cctgagcatggtgcccatcaccagcctgcccagcaccctgaggaccctggagttgcacag 623
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 68921785 cctgagcatggtgcccatcaccagcctacccagcaccctgaggaccctggagttgcacag 68921726
Query: 624 ctgtgaaatctccatggcctggctcctgaaagagcaggaccctacggtgctgcccctgct 683
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 68921725 ctgtgaaatctccatggcctggctcctgaaagagcaggaccctacggtgctgcccctgct 68921666
Query: 684 tgagtgcatcgtgctggaccgcgtccccgccttccgagacgagcacctgcagggcctgac 743
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 68921665 tgagtgcatcgtgctggaccgcgtccccgccttccgagacgagcacctgcagggcctgac 68921606
Query: 744 gcgcttccgggccttgcgctctctagtgctaggtggcacttaccgtgtgaccgagacggg 803
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 68921605 gcgcttccgggccttgcgctctctagtgctaggtggcacctaccgtgtgaccgagacggg 68921546
Query: 804 gctggatatgggcctgcaggagctgagctacctgcagaggctggaagtgctgggctgcac 863
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 68921545 gctggatatgggcctgcaggagctgagctacctgcagaggctggaagtgctgggctgcac 68921486
Query: 864 cctctcggccgacagcaccctcctggccatcagccgccacctccgagatgtgcggaagat 923
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 68921485 cctctcggccgacagcaccctcctggccatcagccgccacctccgagatgtgcggaagat 68921426
Query: 924 ccggctgaccgtgaggggcctctctgcccccggcctggcggtcctggaggggcatgccag 983
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 68921425 ccggctgaccgtgaggggcctctctgcccccggcctggcggtcctgga-gggcatgccag 68921367
Query: 984 ccctggagagtctctgcctgctggggccgctcatcaccccggaaatgccaaccccggctg 1043
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 68921366 ccctggagagtctctgcctgctggggccgctcatcaccccggaaatgccaaccccggctg 68921307
Query: 1044 aaattctctcctcctgccttcacatgcccaagctcagggtccttgaccttcaggggctag 1103
||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||
Sbjct: 68921306 aaattctctcctcctgcctcaccatgcccaagctcagggtccttgagcttcaggggctag 68921247
Query: 1104 gctgggaggg 1113
||||||||||
Sbjct: 68921246 gctgggaggg 68921237
Score = 618 bits (312), Expect = e-174
Identities = 312/312 (100%)
Strand = Plus / Minus
Query: 1 gtcccagttctcagctgcatttttggttcggcgttcagatcctgtgctgctctggctcca 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 68929605 gtcccagttctcagctgcatttttggttcggcgttcagatcctgtgctgctctggctcca 68929546
Query: 61 gtgcccagccacgtccccgcaagaggaaagctgaatctctgctggctacctgaagccgcg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 68929545 gtgcccagccacgtccccgcaagaggaaagctgaatctctgctggctacctgaagccgcg 68929486
Query: 121 accacctccgtgccagcaccctcacttcccccacctccttggtcgccctcagaacgagtc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 68929485 accacctccgtgccagcaccctcacttcccccacctccttggtcgccctcagaacgagtc 68929426
Query: 181 cccgagtccctctggacggaaacggaaatgcgtgtcggcgggatgatggcgacttttgcc 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 68929425 cccgagtccctctggacggaaacggaaatgcgtgtcggcgggatgatggcgacttttgcc 68929366
Query: 241 gacttgccggactctgtcctgttggagatcttctcttacctcccggtccgggaccggatc 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 68929365 gacttgccggactctgtcctgttggagatcttctcttacctcccggtccgggaccggatc 68929306
Query: 301 cgcatctccagg 312
||||||||||||
Sbjct: 68929305 cgcatctccagg 68929294
Score = 618 bits (312), Expect = e-174
Identities = 312/312 (100%)
Strand = Plus / Minus
Query: 1 gtcccagttctcagctgcatttttggttcggcgttcagatcctgtgctgctctggctcca 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 69031663 gtcccagttctcagctgcatttttggttcggcgttcagatcctgtgctgctctggctcca 69031604
Query: 61 gtgcccagccacgtccccgcaagaggaaagctgaatctctgctggctacctgaagccgcg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 69031603 gtgcccagccacgtccccgcaagaggaaagctgaatctctgctggctacctgaagccgcg 69031544
Query: 121 accacctccgtgccagcaccctcacttcccccacctccttggtcgccctcagaacgagtc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 69031543 accacctccgtgccagcaccctcacttcccccacctccttggtcgccctcagaacgagtc 69031484
Query: 181 cccgagtccctctggacggaaacggaaatgcgtgtcggcgggatgatggcgacttttgcc 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 69031483 cccgagtccctctggacggaaacggaaatgcgtgtcggcgggatgatggcgacttttgcc 69031424
Query: 241 gacttgccggactctgtcctgttggagatcttctcttacctcccggtccgggaccggatc 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 69031423 gacttgccggactctgtcctgttggagatcttctcttacctcccggtccgggaccggatc 69031364
Query: 301 cgcatctccagg 312
||||||||||||
Sbjct: 69031363 cgcatctccagg 69031352
Score = 153 bits (77), Expect = 2e-34
Identities = 77/77 (100%)
Strand = Plus / Minus
Query: 308 ccagggtctgtcaccgctggaagaggctggtggacgaccggtggctgtggcgacatgtcg 367
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 68929188 ccagggtctgtcaccgctggaagaggctggtggacgaccggtggctgtggcgacatgtcg 68929129
Query: 368 acctgacgctctacacg 384
|||||||||||||||||
Sbjct: 68929128 acctgacgctctacacg 68929112
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 27,292,860
Number of extensions: 709
Number of successful extensions: 709
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 708
Number of HSP's successfully gapped: 4
Length of query: 1113
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1092
Effective length of database: 2,808,413,156
Effective search space: 3066787166352
Effective search space used: 3066787166352
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)