Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-004050
(1445 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001069921.1| folate transporter 1 [Bos taurus]. 237 2e-62
Alignment gi|NP_001095668.1| thiamine transporter 2 [Bos taurus]. 131 2e-30
Alignment gi|NP_001192939.1| thiamine transporter 1 [Bos taurus]. 123 4e-28
Alignment gi|XP_002694058.1| PREDICTED: feline leukemia virus subgroup A ... 123 4e-28
>ref|NP_001069921.1| folate transporter 1 [Bos taurus].
Length = 508
Score = 237 bits (605), Expect = 2e-62
Identities = 129/190 (67%), Positives = 140/190 (73%)
Frame = +2
Query: 422 GAITSFSAGFVKIRWALWAKLVIAVVTAVQAGLVFLMYSTSSIWLCYGAFVLFRGAYQFL 601
GA+TSF+AGFVKIRWALWA+LVIAVVT +QAGLVFLMY T IWLCY AFVLFRG+YQFL
Sbjct: 320 GALTSFAAGFVKIRWALWARLVIAVVTVLQAGLVFLMYKTDDIWLCYAAFVLFRGSYQFL 379
Query: 602 VPIATFQIASSLSQELRALVFGVNTFLATVLKTVITVIVSDKRGLGLPVPSQFLIYSXXX 781
VPIATFQIA+SLSQELRALVFG+NTFLATVLKTVIT+IVSDKRGLGLPV SQFL+Y
Sbjct: 380 VPIATFQIAASLSQELRALVFGINTFLATVLKTVITLIVSDKRGLGLPVHSQFLVYFVYF 439
Query: 782 XXXXXXXXXXXXXXXXRHFRQGRHQPLALAQELRSPAHEKAGQALSAQAGAPGDGARASR 961
RHF+Q RHQPL AQEL SP EKA Q AQ A DG A
Sbjct: 440 LVLFAAYFLAAVLVGLRHFQQSRHQPLPAAQELMSPMQEKATQD-GAQLPALEDGVFAVG 498
Query: 962 ERCQLPETRA 991
E E +A
Sbjct: 499 ELSPQSEAKA 508
Score = 104 bits (260), Expect = 2e-22
Identities = 46/55 (83%), Positives = 48/55 (87%)
Frame = +3
Query: 261 KQASAEPRPGGRLPSWWCLVFFLCFYGFLAQMRPGESFITPYLLGPDKNFTQKQV 425
KQ AEP+PG SWWCLVFFLCFYGF+AQMRPGESFITPYLLGPDKNFTQ QV
Sbjct: 10 KQMPAEPQPGHEQQSWWCLVFFLCFYGFMAQMRPGESFITPYLLGPDKNFTQTQV 64
>ref|NP_001095668.1| thiamine transporter 2 [Bos taurus].
Length = 485
Score = 131 bits (329), Expect = 2e-30
Identities = 59/116 (50%), Positives = 86/116 (74%)
Frame = +2
Query: 422 GAITSFSAGFVKIRWALWAKLVIAVVTAVQAGLVFLMYSTSSIWLCYGAFVLFRGAYQFL 601
GA+ +F+ G+VK+ W L +L +A+ + V AG +FLM+ T++IW CY +++F+ Y L
Sbjct: 321 GALAAFAVGYVKVNWDLLGELALAIFSVVNAGSLFLMHYTTNIWACYAGYLIFKTVYMLL 380
Query: 602 VPIATFQIASSLSQELRALVFGVNTFLATVLKTVITVIVSDKRGLGLPVPSQFLIY 769
+ IA FQIA +LS E ALVFG+NTF+A V++T+ITVIV D+ GLGLP+ QFL+Y
Sbjct: 381 ITIAVFQIAVNLSVERYALVFGINTFIALVIQTIITVIVVDQGGLGLPISIQFLVY 436
>ref|NP_001192939.1| thiamine transporter 1 [Bos taurus].
Length = 496
Score = 123 bits (309), Expect = 4e-28
Identities = 55/117 (47%), Positives = 85/117 (72%)
Frame = +2
Query: 422 GAITSFSAGFVKIRWALWAKLVIAVVTAVQAGLVFLMYSTSSIWLCYGAFVLFRGAYQFL 601
GA+ F+ G++KI W+ W +L +++ + + A V++M + +IW+CY ++V+FR Y L
Sbjct: 343 GAVAVFAVGYIKISWSTWGELTLSLFSLLIAAAVYIMDTVGNIWVCYASYVVFRIIYMLL 402
Query: 602 VPIATFQIASSLSQELRALVFGVNTFLATVLKTVITVIVSDKRGLGLPVPSQFLIYS 772
+ IATFQIA++LS E ALVFGVNTF+A L+T++T+IV D GLGL + +QF IY+
Sbjct: 403 ITIATFQIAANLSMERYALVFGVNTFIALALQTLLTLIVVDASGLGLEITTQFFIYA 459
Score = 57.8 bits (138), Expect = 2e-08
Identities = 23/40 (57%), Positives = 29/40 (72%)
Frame = +3
Query: 306 WWCLVFFLCFYGFLAQMRPGESFITPYLLGPDKNFTQKQV 425
W+ LC YGF A +RP E F+TPYLLGPDKN T+++V
Sbjct: 29 WFLPTALLCAYGFFASLRPSEPFLTPYLLGPDKNLTEREV 68
>ref|XP_002694058.1| PREDICTED: feline leukemia virus subgroup A receptor-like [Bos
taurus].
Length = 496
Score = 123 bits (309), Expect = 4e-28
Identities = 55/117 (47%), Positives = 85/117 (72%)
Frame = +2
Query: 422 GAITSFSAGFVKIRWALWAKLVIAVVTAVQAGLVFLMYSTSSIWLCYGAFVLFRGAYQFL 601
GA+ F+ G++KI W+ W +L +++ + + A V++M + +IW+CY ++V+FR Y L
Sbjct: 343 GAVAVFAVGYIKISWSTWGELTLSLFSLLIAAAVYIMDTVGNIWVCYASYVVFRIIYMLL 402
Query: 602 VPIATFQIASSLSQELRALVFGVNTFLATVLKTVITVIVSDKRGLGLPVPSQFLIYS 772
+ IATFQIA++LS E ALVFGVNTF+A L+T++T+IV D GLGL + +QF IY+
Sbjct: 403 ITIATFQIAANLSMERYALVFGVNTFIALALQTLLTLIVVDASGLGLEITTQFFIYA 459
Score = 57.8 bits (138), Expect = 2e-08
Identities = 23/40 (57%), Positives = 29/40 (72%)
Frame = +3
Query: 306 WWCLVFFLCFYGFLAQMRPGESFITPYLLGPDKNFTQKQV 425
W+ LC YGF A +RP E F+TPYLLGPDKN T+++V
Sbjct: 29 WFLPTALLCAYGFFASLRPSEPFLTPYLLGPDKNLTEREV 68
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 56,306,217
Number of extensions: 1782636
Number of successful extensions: 11215
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 11060
Number of HSP's successfully gapped: 7
Length of query: 481
Length of database: 17,681,374
Length adjustment: 106
Effective length of query: 375
Effective length of database: 14,174,046
Effective search space: 5315267250
Effective search space used: 5315267250
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-004050
(1445 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_548727.2| PREDICTED: similar to Folate transporter 1 (Sol... 215 1e-55
Alignment gi|XP_543276.2| PREDICTED: similar to solute carrier family 19,... 134 3e-31
Alignment gi|XP_543277.2| PREDICTED: similar to solute carrier family 19,... 130 2e-30
Alignment gi|XP_850843.1| PREDICTED: similar to Thiamine transporter 1 (T... 123 5e-28
Alignment gi|XP_547474.2| PREDICTED: similar to Thiamine transporter 1 (T... 123 5e-28
>ref|XP_548727.2| PREDICTED: similar to Folate transporter 1 (Solute carrier family 19,
member 1) (Placental folate transporter) (FOLT) (Reduced
folate carrier protein) (RFC) (Intestinal folate carrier)
(IFC-1) [Canis familiaris].
Length = 1097
Score = 215 bits (547), Expect = 1e-55
Identities = 127/195 (65%), Positives = 138/195 (70%), Gaps = 5/195 (2%)
Frame = +2
Query: 422 GAITSFSAGFVKIRWALWAKLVIAVVTAVQAGLVFLMYSTSSIWLCYGAFVLFRGAYQFL 601
GAITSFSAGFVKIRWALWAKLVIA VTAVQAGLVFLMYST+SIWLCY AFVLFRGAYQFL
Sbjct: 908 GAITSFSAGFVKIRWALWAKLVIASVTAVQAGLVFLMYSTNSIWLCYVAFVLFRGAYQFL 967
Query: 602 VPIATFQIASSLSQELRALVFGVNTFLATVLKTVITVIVSDKRGLGLPVPSQFLIYSXXX 781
VPIATFQIASSLS+EL ALVFGVNTFLATVLKT+IT+IVSDKRGLGLPV SQFLIY
Sbjct: 968 VPIATFQIASSLSKELCALVFGVNTFLATVLKTIITLIVSDKRGLGLPVHSQFLIYFGYF 1027
Query: 782 XXXXXXXXXXXXXXXXRHFRQGRHQPLALAQELRSPAHEKAGQALSAQAGA-----PGDG 946
+H ++ R P E SPA EKA LS Q+ P
Sbjct: 1028 LVLFVIYLLGAILVIVQHIQEARRAP----PEPGSPA-EKAIPMLSTQSSGLSNLQPTAP 1082
Query: 947 ARASRERCQLPETRA 991
+ S E+ PE +A
Sbjct: 1083 PQTSPEQHPQPEAKA 1097
>ref|XP_543276.2| PREDICTED: similar to solute carrier family 19, member 3 [Canis
familiaris].
Length = 491
Score = 134 bits (336), Expect = 3e-31
Identities = 63/116 (54%), Positives = 87/116 (75%)
Frame = +2
Query: 422 GAITSFSAGFVKIRWALWAKLVIAVVTAVQAGLVFLMYSTSSIWLCYGAFVLFRGAYQFL 601
GA+ +F+AG VK+ W L +L +A+ +A AG +FLM+ T++IW+CY F++F+ +Y L
Sbjct: 322 GALAAFTAGCVKVNWDLLGELALAIFSAADAGSLFLMHYTTNIWVCYAGFLIFKSSYMLL 381
Query: 602 VPIATFQIASSLSQELRALVFGVNTFLATVLKTVITVIVSDKRGLGLPVPSQFLIY 769
+ IA FQIA +LS E ALVFG+NTF+A V++TVITV V D +GLGLPV QFLIY
Sbjct: 382 ITIAAFQIAVNLSVERYALVFGINTFIALVIQTVITVAVVDNQGLGLPVSIQFLIY 437
>ref|XP_543277.2| PREDICTED: similar to solute carrier family 19, member 3 [Canis
familiaris].
Length = 608
Score = 130 bits (328), Expect = 2e-30
Identities = 57/116 (49%), Positives = 87/116 (75%)
Frame = +2
Query: 422 GAITSFSAGFVKIRWALWAKLVIAVVTAVQAGLVFLMYSTSSIWLCYGAFVLFRGAYQFL 601
GA+T+F+ G+VK+ W L +L +A+ + + AG +FLM+ T+ IW CY +++F+ +Y L
Sbjct: 439 GAVTAFAVGYVKVNWDLLGELALAIFSIINAGSLFLMHYTTDIWACYAGYLIFKSSYMLL 498
Query: 602 VPIATFQIASSLSQELRALVFGVNTFLATVLKTVITVIVSDKRGLGLPVPSQFLIY 769
+ IA FQIA +LS E ALVFG+NTF+A V++T++TVIV D++GL LP+ QFL+Y
Sbjct: 499 ITIAVFQIAVNLSVERYALVFGMNTFMALVIQTIMTVIVVDQKGLNLPISIQFLVY 554
Score = 50.4 bits (119), Expect = 4e-06
Identities = 20/41 (48%), Positives = 25/41 (60%)
Frame = +3
Query: 303 SWWCLVFFLCFYGFLAQMRPGESFITPYLLGPDKNFTQKQV 425
SW LC +GF + MRP E F+ PYL GPDKN T ++
Sbjct: 124 SWIYPTVILCLFGFFSMMRPSEPFLIPYLSGPDKNLTSSEI 164
>ref|XP_850843.1| PREDICTED: similar to Thiamine transporter 1 (THTR-1) (ThTr1)
(Thiamine carrier 1) (TC1) (Solute carrier family 19,
member 2) isoform 2 [Canis familiaris].
Length = 459
Score = 123 bits (308), Expect = 5e-28
Identities = 55/117 (47%), Positives = 86/117 (73%)
Frame = +2
Query: 422 GAITSFSAGFVKIRWALWAKLVIAVVTAVQAGLVFLMYSTSSIWLCYGAFVLFRGAYQFL 601
GA+ F+ G+VKI W+ W ++ +++ + + A V++M + +IW+CY ++++FR Y L
Sbjct: 306 GAVAVFAVGYVKISWSTWGEMTLSLFSLLIASSVYIMDTVRNIWVCYTSYIIFRIIYMLL 365
Query: 602 VPIATFQIASSLSQELRALVFGVNTFLATVLKTVITVIVSDKRGLGLPVPSQFLIYS 772
+ IATFQIA++LS E ALVFGVNTF+A L+T++T+IV D GLGL + +QFLIY+
Sbjct: 366 ITIATFQIAANLSMERYALVFGVNTFIALALQTLLTLIVVDASGLGLEITTQFLIYA 422
Score = 58.9 bits (141), Expect = 1e-08
Identities = 24/40 (60%), Positives = 29/40 (72%)
Frame = +3
Query: 306 WWCLVFFLCFYGFLAQMRPGESFITPYLLGPDKNFTQKQV 425
W+ LC YGF A +RP E F+TPYLLGPDKN T++QV
Sbjct: 30 WFLPTALLCAYGFFASLRPSEPFLTPYLLGPDKNLTERQV 69
>ref|XP_547474.2| PREDICTED: similar to Thiamine transporter 1 (THTR-1) (ThTr1)
(Thiamine carrier 1) (TC1) (Solute carrier family 19,
member 2) isoform 1 [Canis familiaris].
Length = 296
Score = 123 bits (308), Expect = 5e-28
Identities = 55/117 (47%), Positives = 86/117 (73%)
Frame = +2
Query: 422 GAITSFSAGFVKIRWALWAKLVIAVVTAVQAGLVFLMYSTSSIWLCYGAFVLFRGAYQFL 601
GA+ F+ G+VKI W+ W ++ +++ + + A V++M + +IW+CY ++++FR Y L
Sbjct: 143 GAVAVFAVGYVKISWSTWGEMTLSLFSLLIASSVYIMDTVRNIWVCYTSYIIFRIIYMLL 202
Query: 602 VPIATFQIASSLSQELRALVFGVNTFLATVLKTVITVIVSDKRGLGLPVPSQFLIYS 772
+ IATFQIA++LS E ALVFGVNTF+A L+T++T+IV D GLGL + +QFLIY+
Sbjct: 203 ITIATFQIAANLSMERYALVFGVNTFIALALQTLLTLIVVDASGLGLEITTQFLIYA 259
Score = 59.3 bits (142), Expect = 9e-09
Identities = 24/41 (58%), Positives = 29/41 (70%)
Frame = +3
Query: 306 WWCLVFFLCFYGFLAQMRPGESFITPYLLGPDKNFTQKQVP 428
W+ LC YGF A +RP E F+TPYLLGPDKN T++Q P
Sbjct: 30 WFLPTALLCAYGFFASLRPSEPFLTPYLLGPDKNLTERQEP 70
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 58,551,548
Number of extensions: 1830262
Number of successful extensions: 11372
Number of sequences better than 1.0e-05: 5
Number of HSP's gapped: 11254
Number of HSP's successfully gapped: 8
Length of query: 481
Length of database: 18,874,504
Length adjustment: 107
Effective length of query: 374
Effective length of database: 15,307,552
Effective search space: 5725024448
Effective search space used: 5725024448
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-004050
(1445 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001192136.1| folate transporter 1 isoform 3 [Homo sapiens]. 204 1e-52
Alignment gi|NP_919231.1| folate transporter 1 isoform 1 [Homo sapiens]. 204 1e-52
Alignment gi|NP_001192135.1| folate transporter 1 isoform 2 [Homo sapiens]. 174 2e-43
Alignment gi|NP_079519.1| thiamine transporter 2 [Homo sapiens]. 130 4e-30
Alignment gi|NP_008927.1| thiamine transporter 1 [Homo sapiens]. 124 2e-28
>ref|NP_001192136.1| folate transporter 1 isoform 3 [Homo sapiens].
Length = 551
Score = 204 bits (520), Expect = 1e-52
Identities = 120/207 (57%), Positives = 136/207 (65%), Gaps = 3/207 (1%)
Frame = +2
Query: 422 GAITSFSAGFVKIRWALWAKLVIAVVTAVQAGLVFLMYST---SSIWLCYGAFVLFRGAY 592
GAITSF+AGFVKIRWA W+KL+IA VTA QAGLVFL+ T SSIWLCY AFVLFRG+Y
Sbjct: 277 GAITSFAAGFVKIRWARWSKLLIAGVTATQAGLVFLLAHTRHPSSIWLCYAAFVLFRGSY 336
Query: 593 QFLVPIATFQIASSLSQELRALVFGVNTFLATVLKTVITVIVSDKRGLGLPVPSQFLIYS 772
QFLVPIATFQIASSLS+EL ALVFGVNTF AT++KT+IT IVSD RGLGLPV QF +YS
Sbjct: 337 QFLVPIATFQIASSLSKELCALVFGVNTFFATIVKTIITFIVSDVRGLGLPVRKQFQLYS 396
Query: 773 XXXXXXXXXXXXXXXXXXXRHFRQGRHQPLALAQELRSPAHEKAGQALSAQAGAPGDGAR 952
RH ++G H AQ LRS A EKA QALS Q G G +
Sbjct: 397 VYFLILSIIYFLGAMLDGLRHCQRGHHPRQPPAQGLRSAAEEKAAQALSVQDKGLG-GLQ 455
Query: 953 ASRERCQLPETRA*PTRPAVLPAERPD 1033
++ PE PA L + D
Sbjct: 456 PAQSPPLSPEDSLGAVGPASLEQRQSD 482
>ref|NP_919231.1| folate transporter 1 isoform 1 [Homo sapiens].
Length = 591
Score = 204 bits (520), Expect = 1e-52
Identities = 120/207 (57%), Positives = 136/207 (65%), Gaps = 3/207 (1%)
Frame = +2
Query: 422 GAITSFSAGFVKIRWALWAKLVIAVVTAVQAGLVFLMYST---SSIWLCYGAFVLFRGAY 592
GAITSF+AGFVKIRWA W+KL+IA VTA QAGLVFL+ T SSIWLCY AFVLFRG+Y
Sbjct: 317 GAITSFAAGFVKIRWARWSKLLIAGVTATQAGLVFLLAHTRHPSSIWLCYAAFVLFRGSY 376
Query: 593 QFLVPIATFQIASSLSQELRALVFGVNTFLATVLKTVITVIVSDKRGLGLPVPSQFLIYS 772
QFLVPIATFQIASSLS+EL ALVFGVNTF AT++KT+IT IVSD RGLGLPV QF +YS
Sbjct: 377 QFLVPIATFQIASSLSKELCALVFGVNTFFATIVKTIITFIVSDVRGLGLPVRKQFQLYS 436
Query: 773 XXXXXXXXXXXXXXXXXXXRHFRQGRHQPLALAQELRSPAHEKAGQALSAQAGAPGDGAR 952
RH ++G H AQ LRS A EKA QALS Q G G +
Sbjct: 437 VYFLILSIIYFLGAMLDGLRHCQRGHHPRQPPAQGLRSAAEEKAAQALSVQDKGLG-GLQ 495
Query: 953 ASRERCQLPETRA*PTRPAVLPAERPD 1033
++ PE PA L + D
Sbjct: 496 PAQSPPLSPEDSLGAVGPASLEQRQSD 522
Score = 85.1 bits (209), Expect = 1e-16
Identities = 39/55 (70%), Positives = 44/55 (80%)
Frame = +3
Query: 261 KQASAEPRPGGRLPSWWCLVFFLCFYGFLAQMRPGESFITPYLLGPDKNFTQKQV 425
KQ EP P L SW LV +LCFYGF+AQ+RPGESFITPYLLGPDKNFT++QV
Sbjct: 10 KQVPVEPGPDPELRSWRHLVCYLCFYGFMAQIRPGESFITPYLLGPDKNFTREQV 64
>ref|NP_001192135.1| folate transporter 1 isoform 2 [Homo sapiens].
Length = 489
Score = 174 bits (441), Expect = 2e-43
Identities = 91/115 (79%), Positives = 100/115 (86%), Gaps = 3/115 (2%)
Frame = +2
Query: 422 GAITSFSAGFVKIRWALWAKLVIAVVTAVQAGLVFLMYST---SSIWLCYGAFVLFRGAY 592
GAITSF+AGFVKIRWA W+KL+IA VTA QAGLVFL+ T SSIWLCY AFVLFRG+Y
Sbjct: 317 GAITSFAAGFVKIRWARWSKLLIAGVTATQAGLVFLLAHTRHPSSIWLCYAAFVLFRGSY 376
Query: 593 QFLVPIATFQIASSLSQELRALVFGVNTFLATVLKTVITVIVSDKRGLGLPVPSQ 757
QFLVPIATFQIASSLS+EL ALVFGVNTF AT++KT+IT IVSD RGLGLPV Q
Sbjct: 377 QFLVPIATFQIASSLSKELCALVFGVNTFFATIVKTIITFIVSDVRGLGLPVRKQ 431
Score = 85.1 bits (209), Expect = 1e-16
Identities = 39/55 (70%), Positives = 44/55 (80%)
Frame = +3
Query: 261 KQASAEPRPGGRLPSWWCLVFFLCFYGFLAQMRPGESFITPYLLGPDKNFTQKQV 425
KQ EP P L SW LV +LCFYGF+AQ+RPGESFITPYLLGPDKNFT++QV
Sbjct: 10 KQVPVEPGPDPELRSWRHLVCYLCFYGFMAQIRPGESFITPYLLGPDKNFTREQV 64
>ref|NP_079519.1| thiamine transporter 2 [Homo sapiens].
Length = 496
Score = 130 bits (326), Expect = 4e-30
Identities = 58/116 (50%), Positives = 86/116 (74%)
Frame = +2
Query: 422 GAITSFSAGFVKIRWALWAKLVIAVVTAVQAGLVFLMYSTSSIWLCYGAFVLFRGAYQFL 601
GA+ +F+ G+VK+ W L +L + V + V AG +FLM+ T++IW CY +++F+ +Y L
Sbjct: 327 GAVAAFAVGYVKVNWDLLGELALVVFSVVNAGSLFLMHYTANIWACYAGYLIFKSSYMLL 386
Query: 602 VPIATFQIASSLSQELRALVFGVNTFLATVLKTVITVIVSDKRGLGLPVPSQFLIY 769
+ IA FQIA +L+ E ALVFG+NTF+A V++T++TVIV D+RGL LPV QFL+Y
Sbjct: 387 ITIAVFQIAVNLNVERYALVFGINTFIALVIQTIMTVIVVDQRGLNLPVSIQFLVY 442
Score = 50.1 bits (118), Expect = 5e-06
Identities = 20/41 (48%), Positives = 25/41 (60%)
Frame = +3
Query: 303 SWWCLVFFLCFYGFLAQMRPGESFITPYLLGPDKNFTQKQV 425
SW LC +GF + MRP E F+ PYL GPDKN T ++
Sbjct: 11 SWIYPTVILCLFGFFSMMRPSEPFLIPYLSGPDKNLTSAEI 51
>ref|NP_008927.1| thiamine transporter 1 [Homo sapiens].
Length = 497
Score = 124 bits (311), Expect = 2e-28
Identities = 55/117 (47%), Positives = 86/117 (73%)
Frame = +2
Query: 422 GAITSFSAGFVKIRWALWAKLVIAVVTAVQAGLVFLMYSTSSIWLCYGAFVLFRGAYQFL 601
GA+ F+ G++KI W+ W ++ +++ + + A V++M + +IW+CY ++V+FR Y L
Sbjct: 344 GAVAVFAVGYIKISWSTWGEMTLSLFSLLIAAAVYIMDTVGNIWVCYASYVVFRIIYMLL 403
Query: 602 VPIATFQIASSLSQELRALVFGVNTFLATVLKTVITVIVSDKRGLGLPVPSQFLIYS 772
+ IATFQIA++LS E ALVFGVNTF+A L+T++T+IV D GLGL + +QFLIY+
Sbjct: 404 ITIATFQIAANLSMERYALVFGVNTFIALALQTLLTLIVVDASGLGLEITTQFLIYA 460
Score = 58.2 bits (139), Expect = 2e-08
Identities = 24/44 (54%), Positives = 30/44 (68%)
Frame = +3
Query: 294 RLPSWWCLVFFLCFYGFLAQMRPGESFITPYLLGPDKNFTQKQV 425
R W+ LC YGF A +RP E F+TPYLLGPDKN T+++V
Sbjct: 26 RRECWFLPTALLCAYGFFASLRPSEPFLTPYLLGPDKNLTEREV 69
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 57,073,274
Number of extensions: 1756216
Number of successful extensions: 10606
Number of sequences better than 1.0e-05: 5
Number of HSP's gapped: 10482
Number of HSP's successfully gapped: 9
Length of query: 481
Length of database: 18,297,164
Length adjustment: 106
Effective length of query: 375
Effective length of database: 14,802,980
Effective search space: 5551117500
Effective search space used: 5551117500
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-004050
(1445 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001186200.1| folate transporter 1 [Mus musculus]. 199 6e-51
Alignment gi|NP_112473.1| folate transporter 1 [Mus musculus]. 199 6e-51
Alignment gi|NP_085033.2| thiamine transporter 2 [Mus musculus]. 128 1e-29
Alignment gi|NP_473428.1| thiamine transporter 1 [Mus musculus]. 122 7e-28
>ref|NP_001186200.1| folate transporter 1 [Mus musculus].
Length = 512
Score = 199 bits (505), Expect = 6e-51
Identities = 108/169 (63%), Positives = 122/169 (72%)
Frame = +2
Query: 425 AITSFSAGFVKIRWALWAKLVIAVVTAVQAGLVFLMYSTSSIWLCYGAFVLFRGAYQFLV 604
AITSFSAGF+ IRW LW+KLVIA V A+QA LVF M+ IW+CY FVLFRGAYQFLV
Sbjct: 314 AITSFSAGFLSIRWTLWSKLVIAGVIAIQASLVFCMFQIRDIWVCYVTFVLFRGAYQFLV 373
Query: 605 PIATFQIASSLSQELRALVFGVNTFLATVLKTVITVIVSDKRGLGLPVPSQFLIYSXXXX 784
PIATFQIASSLS+EL ALVFG+NTFLAT LKT IT++VSDKRGLGL V QF IY
Sbjct: 374 PIATFQIASSLSKELCALVFGINTFLATALKTCITLVVSDKRGLGLQVRDQFRIYFIYFL 433
Query: 785 XXXXXXXXXXXXXXXRHFRQGRHQPLALAQELRSPAHEKAGQALSAQAG 931
R+ ++GRHQPLA AQELRSP E + QA+S Q G
Sbjct: 434 MLSITCFAWAGLDGLRYCQRGRHQPLAQAQELRSPL-ETSVQAISLQDG 481
Score = 79.3 bits (194), Expect = 7e-15
Identities = 39/66 (59%), Positives = 50/66 (75%), Gaps = 2/66 (3%)
Frame = +3
Query: 261 KQASAEPRPGGRLPSWWCLVFFLCFYGFLAQMRPGESFITPYLLGPDKNFTQKQVPS--L 434
KQA EPR L SW CLVF+LCF+GF+AQ+RPGESFITP+LL ++ FT++QV + +
Sbjct: 10 KQAYEEPRQDHELKSWRCLVFYLCFFGFMAQLRPGESFITPFLL--ERKFTKEQVTNEII 67
Query: 435 PFLPAS 452
P LP S
Sbjct: 68 PMLPYS 73
>ref|NP_112473.1| folate transporter 1 [Mus musculus].
Length = 512
Score = 199 bits (505), Expect = 6e-51
Identities = 108/169 (63%), Positives = 122/169 (72%)
Frame = +2
Query: 425 AITSFSAGFVKIRWALWAKLVIAVVTAVQAGLVFLMYSTSSIWLCYGAFVLFRGAYQFLV 604
AITSFSAGF+ IRW LW+KLVIA V A+QA LVF M+ IW+CY FVLFRGAYQFLV
Sbjct: 314 AITSFSAGFLSIRWTLWSKLVIAGVIAIQASLVFCMFQIRDIWVCYVTFVLFRGAYQFLV 373
Query: 605 PIATFQIASSLSQELRALVFGVNTFLATVLKTVITVIVSDKRGLGLPVPSQFLIYSXXXX 784
PIATFQIASSLS+EL ALVFG+NTFLAT LKT IT++VSDKRGLGL V QF IY
Sbjct: 374 PIATFQIASSLSKELCALVFGINTFLATALKTCITLVVSDKRGLGLQVRDQFRIYFIYFL 433
Query: 785 XXXXXXXXXXXXXXXRHFRQGRHQPLALAQELRSPAHEKAGQALSAQAG 931
R+ ++GRHQPLA AQELRSP E + QA+S Q G
Sbjct: 434 MLSITCFAWAGLDGLRYCQRGRHQPLAQAQELRSPL-ETSVQAISLQDG 481
Score = 79.3 bits (194), Expect = 7e-15
Identities = 39/66 (59%), Positives = 50/66 (75%), Gaps = 2/66 (3%)
Frame = +3
Query: 261 KQASAEPRPGGRLPSWWCLVFFLCFYGFLAQMRPGESFITPYLLGPDKNFTQKQVPS--L 434
KQA EPR L SW CLVF+LCF+GF+AQ+RPGESFITP+LL ++ FT++QV + +
Sbjct: 10 KQAYEEPRQDHELKSWRCLVFYLCFFGFMAQLRPGESFITPFLL--ERKFTKEQVTNEII 67
Query: 435 PFLPAS 452
P LP S
Sbjct: 68 PMLPYS 73
>ref|NP_085033.2| thiamine transporter 2 [Mus musculus].
Length = 488
Score = 128 bits (322), Expect = 1e-29
Identities = 61/116 (52%), Positives = 88/116 (75%)
Frame = +2
Query: 422 GAITSFSAGFVKIRWALWAKLVIAVVTAVQAGLVFLMYSTSSIWLCYGAFVLFRGAYQFL 601
GA+ SFS G++K+ W L +L +AV +AV AG +FLM + SIW+CY ++L + +Y FL
Sbjct: 321 GALASFSVGYLKVNWDLLGELGLAVFSAVIAGSLFLMNYSRSIWVCYAGYLLVKSSYSFL 380
Query: 602 VPIATFQIASSLSQELRALVFGVNTFLATVLKTVITVIVSDKRGLGLPVPSQFLIY 769
+ IA FQIA +LS E ALVFG++TF+A V++T++T+IV D+RGL LPV +QFL+Y
Sbjct: 381 ITIAVFQIAVNLSLERYALVFGIDTFIALVIQTIMTMIVVDQRGLQLPVTTQFLVY 436
>ref|NP_473428.1| thiamine transporter 1 [Mus musculus].
Length = 498
Score = 122 bits (306), Expect = 7e-28
Identities = 56/117 (47%), Positives = 85/117 (72%)
Frame = +2
Query: 422 GAITSFSAGFVKIRWALWAKLVIAVVTAVQAGLVFLMYSTSSIWLCYGAFVLFRGAYQFL 601
GA F+ G++K+ W+ W ++ + + + + A V++M + SIW+CY ++V+FR Y L
Sbjct: 345 GASAVFAVGYIKLSWSTWGEMTLFLCSLLIAAAVYVMDTVQSIWVCYASYVVFRIIYMVL 404
Query: 602 VPIATFQIASSLSQELRALVFGVNTFLATVLKTVITVIVSDKRGLGLPVPSQFLIYS 772
+ IATFQIA++LS E ALVFGVNTF+A L+T++T+IV D RGLGL + +QFLIY+
Sbjct: 405 ITIATFQIAANLSMERYALVFGVNTFIALALQTLLTLIVVDARGLGLCITTQFLIYA 461
Score = 58.9 bits (141), Expect = 1e-08
Identities = 24/40 (60%), Positives = 29/40 (72%)
Frame = +3
Query: 306 WWCLVFFLCFYGFLAQMRPGESFITPYLLGPDKNFTQKQV 425
W+ LC YGF A +RP E F+TPYLLGPDKN T++QV
Sbjct: 30 WFLPTALLCAYGFFANLRPSEPFLTPYLLGPDKNLTERQV 69
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 47,706,945
Number of extensions: 1428265
Number of successful extensions: 8364
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 8251
Number of HSP's successfully gapped: 7
Length of query: 481
Length of database: 15,617,559
Length adjustment: 105
Effective length of query: 376
Effective length of database: 12,463,779
Effective search space: 4686380904
Effective search space used: 4686380904
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-004050
(1445 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_003359060.1| PREDICTED: folate transporter 1 [Sus scrofa]. 327 1e-89
Alignment gi|XP_003133743.1| PREDICTED: thiamine transporter 2-like [Sus ... 132 6e-31
Alignment gi|NP_001136139.1| feline leukemia virus subgroup A receptor [S... 127 2e-29
>ref|XP_003359060.1| PREDICTED: folate transporter 1 [Sus scrofa].
Length = 663
Score = 327 bits (838), Expect = 1e-89
Identities = 171/190 (90%), Positives = 171/190 (90%)
Frame = +2
Query: 422 GAITSFSAGFVKIRWALWAKLVIAVVTAVQAGLVFLMYSTSSIWLCYGAFVLFRGAYQFL 601
GAITSFSAGFVKIRWALWAKLVIAVVTAVQAGLVFLMYSTSSIWLCYGAFVLFRGAYQFL
Sbjct: 474 GAITSFSAGFVKIRWALWAKLVIAVVTAVQAGLVFLMYSTSSIWLCYGAFVLFRGAYQFL 533
Query: 602 VPIATFQIASSLSQELRALVFGVNTFLATVLKTVITVIVSDKRGLGLPVPSQFLIYSXXX 781
VPIATFQIASSLSQELRALVFGVNTFLATVLKTVITVIVSDKRGLGLPVPSQFLIYS
Sbjct: 534 VPIATFQIASSLSQELRALVFGVNTFLATVLKTVITVIVSDKRGLGLPVPSQFLIYSVYF 593
Query: 782 XXXXXXXXXXXXXXXXRHFRQGRHQPLALAQELRSPAHEKAGQALSAQAGAPGDGARASR 961
RHFRQGRHQPLALAQELRSPAHEKAGQALSAQAGAPGDGARASR
Sbjct: 594 LVLFVAYFFAAVLAGLRHFRQGRHQPLALAQELRSPAHEKAGQALSAQAGAPGDGARASR 653
Query: 962 ERCQLPETRA 991
ERCQLPETRA
Sbjct: 654 ERCQLPETRA 663
Score = 129 bits (324), Expect = 4e-30
Identities = 62/75 (82%), Positives = 62/75 (82%)
Frame = +3
Query: 201 RSCSAARAXXXXXXXXXXXXKQASAEPRPGGRLPSWWCLVFFLCFYGFLAQMRPGESFIT 380
RS SAARA KQASAEPRPGGRLPSWWCLVFFLCFYGFLAQMRPGESFIT
Sbjct: 155 RSRSAARAPGGMELPGPEGEKQASAEPRPGGRLPSWWCLVFFLCFYGFLAQMRPGESFIT 214
Query: 381 PYLLGPDKNFTQKQV 425
PYLLGPDKNFTQKQV
Sbjct: 215 PYLLGPDKNFTQKQV 229
>ref|XP_003133743.1| PREDICTED: thiamine transporter 2-like [Sus scrofa].
Length = 485
Score = 132 bits (331), Expect = 6e-31
Identities = 60/116 (51%), Positives = 86/116 (74%)
Frame = +2
Query: 422 GAITSFSAGFVKIRWALWAKLVIAVVTAVQAGLVFLMYSTSSIWLCYGAFVLFRGAYQFL 601
GA+ + + G+VK+ W L +L +A+ + V AG +FLM+ T+SIW CY +++F+ Y L
Sbjct: 322 GAVAALAVGYVKVNWDLLGELALAIFSVVSAGSLFLMHYTTSIWACYAGYLIFKTVYMLL 381
Query: 602 VPIATFQIASSLSQELRALVFGVNTFLATVLKTVITVIVSDKRGLGLPVPSQFLIY 769
+ IA FQIA +LS E ALVFG+NTF+A V++T+ITVIV D+RGL LPV +QFL+Y
Sbjct: 382 ITIAVFQIAVNLSVERYALVFGINTFIALVIQTIITVIVVDRRGLELPVSTQFLVY 437
Score = 51.6 bits (122), Expect = 1e-06
Identities = 21/41 (51%), Positives = 26/41 (63%)
Frame = +3
Query: 303 SWWCLVFFLCFYGFLAQMRPGESFITPYLLGPDKNFTQKQV 425
SW LC +GF + MRP E F+ PYL GPDKN T +Q+
Sbjct: 11 SWIYPTVILCLFGFFSMMRPSEPFLMPYLSGPDKNLTTEQI 51
>ref|NP_001136139.1| feline leukemia virus subgroup A receptor [Sus scrofa].
Length = 496
Score = 127 bits (318), Expect = 2e-29
Identities = 58/117 (49%), Positives = 85/117 (72%)
Frame = +2
Query: 422 GAITSFSAGFVKIRWALWAKLVIAVVTAVQAGLVFLMYSTSSIWLCYGAFVLFRGAYQFL 601
GA+ F+ G++KI W+ W +L ++V + + A V++M + +IW+CY ++V+FR Y L
Sbjct: 343 GAVAVFAVGYIKISWSTWGELTLSVFSLLIAAAVYIMDTVGNIWVCYASYVVFRIIYMLL 402
Query: 602 VPIATFQIASSLSQELRALVFGVNTFLATVLKTVITVIVSDKRGLGLPVPSQFLIYS 772
+ IATFQIA+SLS E ALVFGVNTF+A L+T++TVIV D GLGL + +QF IY+
Sbjct: 403 ITIATFQIAASLSMERYALVFGVNTFIALALQTLLTVIVVDASGLGLEITTQFFIYA 459
Score = 57.0 bits (136), Expect = 3e-08
Identities = 22/40 (55%), Positives = 29/40 (72%)
Frame = +3
Query: 306 WWCLVFFLCFYGFLAQMRPGESFITPYLLGPDKNFTQKQV 425
W+ +C YGF A +RP E F+TPYLLGPDKN T+++V
Sbjct: 30 WFLPTALICAYGFFASLRPSEPFLTPYLLGPDKNLTEREV 69
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 36,507,055
Number of extensions: 1163789
Number of successful extensions: 7567
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 7471
Number of HSP's successfully gapped: 6
Length of query: 481
Length of database: 11,343,932
Length adjustment: 103
Effective length of query: 378
Effective length of database: 8,779,541
Effective search space: 3318666498
Effective search space used: 3318666498
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-004050
(1445 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr13 1314 0.0
>Sscrofa_Chr13
|| Length = 218635234
Score = 1314 bits (663), Expect = 0.0
Identities = 686/691 (99%), Gaps = 2/691 (0%)
Strand = Plus / Minus
Query: 755 cagttcctcatctactccgtgtacttcctggtgctctttgtcgcctacttcttcgcagct 814
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 218092827 cagttcctcatctactccgtgtacttcctggtgctctttgtcgcctacttcttcgcagct 218092768
Query: 815 gtgctggcgggcctgcgccacttccgacagggccgccaccagcccctggcgctggcccag 874
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 218092767 gtgctggcgggcctgcgccacttccgacagggccgccaccagcccctggcgctggcccag 218092708
Query: 875 gagctgaggagtcccgcgcacgagaaggctgggcaggcgctgagcgcacaggccggggcc 934
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 218092707 gagctgaggagtcccgcgcacgagaaggctgggcaggcgctgagcgcacaggccggggcc 218092648
Query: 935 ccgggggacggtgccagggcctcccgggagcgctgccagctgcccgagaccagagcctga 994
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 218092647 ccgggggacggtgccagggcctcccgggagcgctgccagctgcccgagaccagagcctga 218092588
Query: 995 cccacccggcctgctgtcctgcccgctgagcggccagattcctgacgccagagcctcctg 1054
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 218092587 cccacccggcctgctgtcctgcccgctgagcggccagattcctgacgccagagcctcctg 218092528
Query: 1055 ggccttgacctctgggcactgatgcgtccctgcagctgcctctcctcttggggtcagcag 1114
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 218092527 ggccttgacctctgggcactgatgcgtccctgcagctgcctctcctcttggggtcagcag 218092468
Query: 1115 gccatgctgtggcatcgtccgaattccagccttcagttgcagtaccggtgacccaggggt 1174
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 218092467 gccatgctgtggcatcgtccgaattccagccttcagttgcagtaccggtgacccaggggt 218092408
Query: 1175 ccctaatggtccgtccccgtgacccccaccccagcgaggggtccttggcctgtcccatgt 1234
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 218092407 ccctaatggtccgtccccgtgacccccaccccagcgaggggtccttggcctgtcccatgt 218092348
Query: 1235 ggccccgaacgcggcaccctcggcctgcttcacgccctggcgggggcgcttcctcatgcc 1294
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 218092347 ggccccgaacgcggcaccctcggcctgcttcacgccctggcgggggcgcttcctcatgcc 218092288
Query: 1295 cacaggcctttgtcctcacccccagggaggcaggtcccacttgtccccaggtggtcccag 1354
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 218092287 cacaggcctttgtcctcacccccagggaggcaggtcccacttgtccccaggtggtcccag 218092228
Query: 1355 atgccagccagggaactggcccccctcagctgtcctgggcccctgcgggcgggagtggga 1414
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 218092227 atgccagccagggaactggcccccctcagctgtcctggg-ccctgcgggcgggagtggga 218092169
Query: 1415 ccccaagtcctggggccccgcggctaaactg 1445
|| | ||||||||| |||||||||||||||
Sbjct: 218092168 gccaaggtcctgggg-cccgcggctaaactg 218092139
Score = 438 bits (221), Expect = e-120
Identities = 224/225 (99%)
Strand = Plus / Minus
Query: 199 ccaggtcctgcagcgccgccagggccccgggtggcatggagctgcctggcccagaagggg 258
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 218109080 ccaggtcccgcagcgccgccagggccccgggtggcatggagctgcctggcccagaagggg 218109021
Query: 259 agaagcaggcgtctgcggagccccggccgggtggcaggctgccgtcctggtggtgcctgg 318
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 218109020 agaagcaggcgtctgcggagccccggccgggtggcaggctgccgtcctggtggtgcctgg 218108961
Query: 319 tcttcttcctctgcttctacggcttcctggcccagatgcggcccggggagagcttcatca 378
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 218108960 tcttcttcctctgcttctacggcttcctggcccagatgcggcccggggagagcttcatca 218108901
Query: 379 cgccctacctcctaggccccgacaagaacttcacgcagaagcagg 423
|||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 218108900 cgccctacctcctaggccccgacaagaacttcacgcagaagcagg 218108856
Score = 394 bits (199), Expect = e-107
Identities = 199/199 (100%)
Strand = Plus / Minus
Query: 419 gcaggtgccatcacttccttttctgccggcttcgtgaagatccgctgggcgctgtgggcg 478
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 218104092 gcaggtgccatcacttccttttctgccggcttcgtgaagatccgctgggcgctgtgggcg 218104033
Query: 479 aagctggtcatcgccgtggtgacggccgtgcaggcggggctcgtcttcctcatgtacagc 538
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 218104032 aagctggtcatcgccgtggtgacggccgtgcaggcggggctcgtcttcctcatgtacagc 218103973
Query: 539 acgagcagcatctggctgtgctacggcgccttcgtgctcttccgcggcgcctaccagttc 598
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 218103972 acgagcagcatctggctgtgctacggcgccttcgtgctcttccgcggcgcctaccagttc 218103913
Query: 599 ctggtgcccatcgccacgt 617
|||||||||||||||||||
Sbjct: 218103912 ctggtgcccatcgccacgt 218103894
Score = 351 bits (177), Expect = 7e-94
Identities = 177/177 (100%)
Strand = Plus / Minus
Query: 26 caggctgtgtgggtgcagagtcctgggccagctcagaccttcagacacgcttctgactgg 85
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 218110489 caggctgtgtgggtgcagagtcctgggccagctcagaccttcagacacgcttctgactgg 218110430
Query: 86 aagcaccgcctcggggtttcagaagccatgggcgtccaggaagtagaaacgaagacagca 145
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 218110429 aagcaccgcctcggggtttcagaagccatgggcgtccaggaagtagaaacgaagacagca 218110370
Query: 146 gttttctttcccggcgctggagtctgagacgtctgtccggggactcggggacaccag 202
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 218110369 gttttctttcccggcgctggagtctgagacgtctgtccggggactcggggacaccag 218110313
Score = 281 bits (142), Expect = 5e-73
Identities = 142/142 (100%)
Strand = Plus / Minus
Query: 616 gttccagatcgcgtcctctctttctcaagagctgcgggccctggtcttcggagtcaacac 675
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 218100669 gttccagatcgcgtcctctctttctcaagagctgcgggccctggtcttcggagtcaacac 218100610
Query: 676 cttcctcgccaccgtgctgaagaccgtcattactgtcatcgtctccgacaagcggggcct 735
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 218100609 cttcctcgccaccgtgctgaagaccgtcattactgtcatcgtctccgacaagcggggcct 218100550
Query: 736 gggcctcccggtcccctctcag 757
||||||||||||||||||||||
Sbjct: 218100549 gggcctcccggtcccctctcag 218100528
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 34,559,681
Number of extensions: 245
Number of successful extensions: 245
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 244
Number of HSP's successfully gapped: 5
Length of query: 1445
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1424
Effective length of database: 2,808,413,156
Effective search space: 3999180334144
Effective search space used: 3999180334144
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)