Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-004052
(1126 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_002695803.1| PREDICTED: cytochrome b5 domain containing 2... 441 e-124
Alignment gi|XP_593364.3| PREDICTED: cytochrome b5 domain containing 2-li... 441 e-124
Alignment gi|NP_001068601.1| membrane-associated progesterone receptor co... 76 6e-14
Alignment gi|NP_001069887.1| neudesin precursor [Bos taurus]. 75 8e-14
Alignment gi|NP_001092530.1| membrane-associated progesterone receptor co... 73 5e-13
>ref|XP_002695803.1| PREDICTED: cytochrome b5 domain containing 2-like [Bos taurus].
Length = 263
Score = 441 bits (1133), Expect = e-124
Identities = 202/237 (85%), Positives = 220/237 (92%)
Frame = +1
Query: 370 GWWSPRADFRLFIPEELARYRGRPGDPGLYLALLGRVYDVSSGRRHYEPGAPYSGFAGRD 549
GWWSPRADFRLFIPEELARYRGRPGDPGLYLALLGRVYDVSSGRRHYEPGA YSGFAGRD
Sbjct: 27 GWWSPRADFRLFIPEELARYRGRPGDPGLYLALLGRVYDVSSGRRHYEPGAHYSGFAGRD 86
Query: 550 ASRAFVTGDYSETGLVDDVSDLSFSEMLTLQNWLSFYEKNYEFIGRVSGRFYGQDGLPTP 729
ASRAFVTGDYSE GLVDDVSDLSFSEMLTLQNWLSFYEKNY+FIGRV GRFYG+DGLPTP
Sbjct: 87 ASRAFVTGDYSEAGLVDDVSDLSFSEMLTLQNWLSFYEKNYKFIGRVIGRFYGEDGLPTP 146
Query: 730 ELTRTEAMIARGVQANKQDLEEKQRFPPCNAEWSSARGSRLWCSPKSGGVSRDWTGVPRK 909
ELT+ EAM+ +G++A++Q+L EKQRFPPCNAEWS RGSR WCS +SGGVSRDW GVPRK
Sbjct: 147 ELTQAEAMMTKGLEADRQELIEKQRFPPCNAEWSFIRGSRFWCSQQSGGVSRDWIGVPRK 206
Query: 910 LFKPGAKEPHCVCVKTTGAPSDQTPDSPPHRNRGDLDHPSLAEYPGCPPLATSCSLP 1080
LFKPG K PHCVCV+TTG PSDQ+P++P HRNRGDLDHP+L EYPGCPPLA +CS+P
Sbjct: 207 LFKPGVK-PHCVCVRTTGPPSDQSPENPTHRNRGDLDHPNLGEYPGCPPLAITCSVP 262
>ref|XP_593364.3| PREDICTED: cytochrome b5 domain containing 2-like [Bos taurus].
Length = 267
Score = 441 bits (1133), Expect = e-124
Identities = 202/237 (85%), Positives = 220/237 (92%)
Frame = +1
Query: 370 GWWSPRADFRLFIPEELARYRGRPGDPGLYLALLGRVYDVSSGRRHYEPGAPYSGFAGRD 549
GWWSPRADFRLFIPEELARYRGRPGDPGLYLALLGRVYDVSSGRRHYEPGA YSGFAGRD
Sbjct: 31 GWWSPRADFRLFIPEELARYRGRPGDPGLYLALLGRVYDVSSGRRHYEPGAHYSGFAGRD 90
Query: 550 ASRAFVTGDYSETGLVDDVSDLSFSEMLTLQNWLSFYEKNYEFIGRVSGRFYGQDGLPTP 729
ASRAFVTGDYSE GLVDDVSDLSFSEMLTLQNWLSFYEKNY+FIGRV GRFYG+DGLPTP
Sbjct: 91 ASRAFVTGDYSEAGLVDDVSDLSFSEMLTLQNWLSFYEKNYKFIGRVIGRFYGEDGLPTP 150
Query: 730 ELTRTEAMIARGVQANKQDLEEKQRFPPCNAEWSSARGSRLWCSPKSGGVSRDWTGVPRK 909
ELT+ EAM+ +G++A++Q+L EKQRFPPCNAEWS RGSR WCS +SGGVSRDW GVPRK
Sbjct: 151 ELTQAEAMMTKGLEADRQELIEKQRFPPCNAEWSFIRGSRFWCSQQSGGVSRDWIGVPRK 210
Query: 910 LFKPGAKEPHCVCVKTTGAPSDQTPDSPPHRNRGDLDHPSLAEYPGCPPLATSCSLP 1080
LFKPG K PHCVCV+TTG PSDQ+P++P HRNRGDLDHP+L EYPGCPPLA +CS+P
Sbjct: 211 LFKPGVK-PHCVCVRTTGPPSDQSPENPTHRNRGDLDHPNLGEYPGCPPLAITCSVP 266
>ref|NP_001068601.1| membrane-associated progesterone receptor component 1 [Bos taurus].
Length = 194
Score = 75.9 bits (185), Expect = 6e-14
Identities = 43/106 (40%), Positives = 61/106 (57%), Gaps = 3/106 (2%)
Frame = +1
Query: 382 PRADFRLFIPEELARYRGRPGDPGLYLALLGRVYDVSSGRRHYEPGAPYSGFAGRDASRA 561
PR R F P EL R+ G DP + +A+ G+V+DV+ GR+ Y P PY FAGRDASR
Sbjct: 65 PRLKRRDFTPAELRRFDGVQ-DPRILMAINGKVFDVTKGRKFYGPEGPYGVFAGRDASRG 123
Query: 562 FVTGDYSETGL---VDDVSDLSFSEMLTLQNWLSFYEKNYEFIGRV 690
T + L DD+SDL+ ++ TL +W S + Y +G++
Sbjct: 124 LATFCLDKEALKDEYDDLSDLTPAQQETLSDWDSQFTFKYHHVGKL 169
>ref|NP_001069887.1| neudesin precursor [Bos taurus].
Length = 169
Score = 75.5 bits (184), Expect = 8e-14
Identities = 39/110 (35%), Positives = 59/110 (53%), Gaps = 1/110 (0%)
Frame = +1
Query: 397 RLFIPEELARYRGRPGDPGLYLALLGRVYDVSSGRRHYEPGAPYSGFAGRDASRAFVTGD 576
RLF EELARY G D +Y+A+ G V+DV+SG+ Y GAPY+ G+D++R
Sbjct: 42 RLFTEEELARYGGEEEDQPIYMAVKGVVFDVTSGKEFYGRGAPYNALTGKDSTRGVAKMS 101
Query: 577 YSETGLVDDVSDLSFSEMLTLQN-WLSFYEKNYEFIGRVSGRFYGQDGLP 723
L D + L+ E+ +L + + Y+ Y +G + R +DG P
Sbjct: 102 LDPADLTHDTTGLTAEELESLDDVFTRVYKAKYPIVGYTARRILNEDGSP 151
>ref|NP_001092530.1| membrane-associated progesterone receptor component 2 [Bos taurus].
Length = 223
Score = 72.8 bits (177), Expect = 5e-13
Identities = 40/106 (37%), Positives = 63/106 (59%), Gaps = 3/106 (2%)
Frame = +1
Query: 382 PRADFRLFIPEELARYRGRPGDPGLYLALLGRVYDVSSGRRHYEPGAPYSGFAGRDASRA 561
PR R F E+L +Y G +P + LA+ G+V+DV+ G + Y P PY FAGRDASR
Sbjct: 96 PRMKKRDFSLEQLRQYDGSR-NPRILLAVNGKVFDVTKGSKFYGPAGPYGIFAGRDASRG 154
Query: 562 FVTGDYSETGL---VDDVSDLSFSEMLTLQNWLSFYEKNYEFIGRV 690
T + L DD+SDL+ +M +++ W +++ Y+++GR+
Sbjct: 155 LATFCLDKDALKDEYDDLSDLNAVQMESVREWEMQFKEKYDYVGRL 200
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 47,700,633
Number of extensions: 1520279
Number of successful extensions: 7491
Number of sequences better than 1.0e-05: 5
Number of HSP's gapped: 7410
Number of HSP's successfully gapped: 5
Length of query: 375
Length of database: 17,681,374
Length adjustment: 104
Effective length of query: 271
Effective length of database: 14,240,222
Effective search space: 3859100162
Effective search space used: 3859100162
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-004052
(1126 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_546555.2| PREDICTED: similar to Temporarily Assigned Gene... 415 e-116
Alignment gi|NP_001182077.1| membrane-associated progesterone receptor co... 76 7e-14
Alignment gi|XP_533292.1| PREDICTED: similar to progesterone membrane bin... 72 1e-12
Alignment gi|XP_537145.2| PREDICTED: similar to SPUF protein precursor (S... 59 7e-09
>ref|XP_546555.2| PREDICTED: similar to Temporarily Assigned Gene name family member
(tag-131) [Canis familiaris].
Length = 263
Score = 415 bits (1066), Expect = e-116
Identities = 190/237 (80%), Positives = 207/237 (87%)
Frame = +1
Query: 370 GWWSPRADFRLFIPEELARYRGRPGDPGLYLALLGRVYDVSSGRRHYEPGAPYSGFAGRD 549
GWWS RA RLF+PEELARYRG PG PGLYLALLGRVYDVS GRRHYEPGA YSGFAGRD
Sbjct: 26 GWWSDRAGLRLFVPEELARYRGGPGAPGLYLALLGRVYDVSPGRRHYEPGAHYSGFAGRD 85
Query: 550 ASRAFVTGDYSETGLVDDVSDLSFSEMLTLQNWLSFYEKNYEFIGRVSGRFYGQDGLPTP 729
ASRAFVTGDYSE GLVDDVSDLSFSE+LTLQNWLSFYEKNYE +GRV GRFYG+DGLPTP
Sbjct: 86 ASRAFVTGDYSEAGLVDDVSDLSFSEVLTLQNWLSFYEKNYELVGRVIGRFYGEDGLPTP 145
Query: 730 ELTRTEAMIARGVQANKQDLEEKQRFPPCNAEWSSARGSRLWCSPKSGGVSRDWTGVPRK 909
LTR EA++ARG +A ++ L+EKQ+FPPCNAEWSS RGSRLWCS +SGGVSRDW GVPRK
Sbjct: 146 TLTRVEAVMARGAEAGQRALQEKQKFPPCNAEWSSGRGSRLWCSTESGGVSRDWVGVPRK 205
Query: 910 LFKPGAKEPHCVCVKTTGAPSDQTPDSPPHRNRGDLDHPSLAEYPGCPPLATSCSLP 1080
L++PGAKEPHCVCV+TTG PSDQ P H NRGDLD+P L EY GCPPLA +CS P
Sbjct: 206 LYRPGAKEPHCVCVRTTGPPSDQAPGLTAHANRGDLDNPGLGEYAGCPPLAVACSFP 262
>ref|NP_001182077.1| membrane-associated progesterone receptor component 1 [Canis lupus
familiaris].
Length = 195
Score = 75.9 bits (185), Expect = 7e-14
Identities = 43/106 (40%), Positives = 61/106 (57%), Gaps = 3/106 (2%)
Frame = +1
Query: 382 PRADFRLFIPEELARYRGRPGDPGLYLALLGRVYDVSSGRRHYEPGAPYSGFAGRDASRA 561
PR R F P EL R+ G DP + +A+ G+V+DV+ GR+ Y P PY FAGRDASR
Sbjct: 66 PRLKRRDFTPAELRRFDGVQ-DPRILMAINGKVFDVTKGRKFYGPEGPYGVFAGRDASRG 124
Query: 562 FVTGDYSETGL---VDDVSDLSFSEMLTLQNWLSFYEKNYEFIGRV 690
T + L DD+SDL+ ++ TL +W S + Y +G++
Sbjct: 125 LATFCLDKEALKEEYDDLSDLTPAQQETLSDWDSQFTFKYHHVGKL 170
>ref|XP_533292.1| PREDICTED: similar to progesterone membrane binding protein [Canis
familiaris].
Length = 223
Score = 72.0 bits (175), Expect = 1e-12
Identities = 40/106 (37%), Positives = 62/106 (58%), Gaps = 3/106 (2%)
Frame = +1
Query: 382 PRADFRLFIPEELARYRGRPGDPGLYLALLGRVYDVSSGRRHYEPGAPYSGFAGRDASRA 561
PR R F E+L +Y G P + LA+ G+V+DV+ G + Y P PY FAGRDASR
Sbjct: 96 PRMKKRDFSLEQLRQYDGSR-TPRILLAVNGKVFDVTKGSKFYGPAGPYGIFAGRDASRG 154
Query: 562 FVTGDYSETGL---VDDVSDLSFSEMLTLQNWLSFYEKNYEFIGRV 690
T + L DD+SDL+ +M +++ W +++ Y+++GR+
Sbjct: 155 LATFCLDKDALKDEYDDLSDLNAVQMESVREWEMQFKEKYDYVGRL 200
>ref|XP_537145.2| PREDICTED: similar to SPUF protein precursor (Secreted protein of
unknown function) [Canis familiaris].
Length = 151
Score = 59.3 bits (142), Expect = 7e-09
Identities = 30/98 (30%), Positives = 50/98 (51%), Gaps = 1/98 (1%)
Frame = +1
Query: 433 GRPGDPGLYLALLGRVYDVSSGRRHYEPGAPYSGFAGRDASRAFVTGDYSETGLVDDVSD 612
G D +Y+A+ G V+DV+SG+ Y GAPY+ G+D++R L D +
Sbjct: 36 GMSEDQPIYMAVKGVVFDVTSGKEFYGRGAPYNALTGKDSTRGVAKMSLDPADLTHDTTG 95
Query: 613 LSFSEMLTLQN-WLSFYEKNYEFIGRVSGRFYGQDGLP 723
L+ E+ +L + + Y+ Y +G + R +DG P
Sbjct: 96 LTAEELKSLDDVFNKVYKAKYPIVGYTARRILNEDGSP 133
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 49,859,137
Number of extensions: 1570127
Number of successful extensions: 7321
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 7284
Number of HSP's successfully gapped: 4
Length of query: 375
Length of database: 18,874,504
Length adjustment: 104
Effective length of query: 271
Effective length of database: 15,407,560
Effective search space: 4175448760
Effective search space used: 4175448760
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-004052
(1126 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_653212.1| neuferricin [Homo sapiens]. 426 e-119
Alignment gi|NP_006658.1| membrane-associated progesterone receptor compo... 77 3e-14
Alignment gi|NP_037481.1| neudesin precursor [Homo sapiens]. 76 6e-14
Alignment gi|NP_006311.2| membrane-associated progesterone receptor compo... 73 5e-13
>ref|NP_653212.1| neuferricin [Homo sapiens].
Length = 264
Score = 426 bits (1094), Expect = e-119
Identities = 196/237 (82%), Positives = 211/237 (89%)
Frame = +1
Query: 370 GWWSPRADFRLFIPEELARYRGRPGDPGLYLALLGRVYDVSSGRRHYEPGAPYSGFAGRD 549
GWW PRA FRLFIPEEL+RYRG PGDPGLYLALLGRVYDVSSGRRHYEPG+ YSGFAGRD
Sbjct: 27 GWWGPRAGFRLFIPEELSRYRGGPGDPGLYLALLGRVYDVSSGRRHYEPGSHYSGFAGRD 86
Query: 550 ASRAFVTGDYSETGLVDDVSDLSFSEMLTLQNWLSFYEKNYEFIGRVSGRFYGQDGLPTP 729
ASRAFVTGD SE GLVDDVSDLS +EMLTL NWLSFYEKNY +GRV+GRFYG+DGLPTP
Sbjct: 87 ASRAFVTGDCSEAGLVDDVSDLSAAEMLTLHNWLSFYEKNYVCVGRVTGRFYGEDGLPTP 146
Query: 730 ELTRTEAMIARGVQANKQDLEEKQRFPPCNAEWSSARGSRLWCSPKSGGVSRDWTGVPRK 909
LT+ EA I RG++ANK L+EKQ FPPCNAEWSSARGSRLWCS KSGGVSRDW GVPRK
Sbjct: 147 ALTQVEAAITRGLEANKLQLQEKQTFPPCNAEWSSARGSRLWCSQKSGGVSRDWIGVPRK 206
Query: 910 LFKPGAKEPHCVCVKTTGAPSDQTPDSPPHRNRGDLDHPSLAEYPGCPPLATSCSLP 1080
L+KPGAKEP CVCV+TTG PS Q PD+PPHRNRGDLDHP+LAEY GCPPLA +CS P
Sbjct: 207 LYKPGAKEPRCVCVRTTGPPSGQMPDNPPHRNRGDLDHPNLAEYTGCPPLAITCSFP 263
>ref|NP_006658.1| membrane-associated progesterone receptor component 1 [Homo
sapiens].
Length = 195
Score = 77.0 bits (188), Expect = 3e-14
Identities = 43/106 (40%), Positives = 61/106 (57%), Gaps = 3/106 (2%)
Frame = +1
Query: 382 PRADFRLFIPEELARYRGRPGDPGLYLALLGRVYDVSSGRRHYEPGAPYSGFAGRDASRA 561
PR R F P EL R+ G DP + +A+ G+V+DV+ GR+ Y P PY FAGRDASR
Sbjct: 66 PRLKRRDFTPAELRRFDGVQ-DPRILMAINGKVFDVTKGRKFYGPEGPYGVFAGRDASRG 124
Query: 562 FVTGDYSETGL---VDDVSDLSFSEMLTLQNWLSFYEKNYEFIGRV 690
T + L DD+SDL+ ++ TL +W S + Y +G++
Sbjct: 125 LATFCLDKEALKDEYDDLSDLTAAQQETLSDWESQFTFKYHHVGKL 170
>ref|NP_037481.1| neudesin precursor [Homo sapiens].
Length = 172
Score = 75.9 bits (185), Expect = 6e-14
Identities = 40/110 (36%), Positives = 57/110 (51%), Gaps = 1/110 (0%)
Frame = +1
Query: 397 RLFIPEELARYRGRPGDPGLYLALLGRVYDVSSGRRHYEPGAPYSGFAGRDASRAFVTGD 576
RLF EELARY G D +YLA+ G V+DV+SG+ Y GAPY+ G+D++R
Sbjct: 45 RLFTEEELARYGGEEEDQPIYLAVKGVVFDVTSGKEFYGRGAPYNALTGKDSTRGVAKMS 104
Query: 577 YSETGLVDDVSDLSFSEMLTLQN-WLSFYEKNYEFIGRVSGRFYGQDGLP 723
L D + L+ E+ L + Y+ Y +G + R +DG P
Sbjct: 105 LDPADLTHDTTGLTAKELEALDEVFTKVYKAKYPIVGYTARRILNEDGSP 154
>ref|NP_006311.2| membrane-associated progesterone receptor component 2 [Homo
sapiens].
Length = 247
Score = 72.8 bits (177), Expect = 5e-13
Identities = 40/106 (37%), Positives = 63/106 (59%), Gaps = 3/106 (2%)
Frame = +1
Query: 382 PRADFRLFIPEELARYRGRPGDPGLYLALLGRVYDVSSGRRHYEPGAPYSGFAGRDASRA 561
PR R F E+L +Y G +P + LA+ G+V+DV+ G + Y P PY FAGRDASR
Sbjct: 120 PRMKKRDFSLEQLRQYDGSR-NPRILLAVNGKVFDVTKGSKFYGPAGPYGIFAGRDASRG 178
Query: 562 FVTGDYSETGL---VDDVSDLSFSEMLTLQNWLSFYEKNYEFIGRV 690
T + L DD+SDL+ +M +++ W +++ Y+++GR+
Sbjct: 179 LATFCLDKDALRDEYDDLSDLNAVQMESVREWEMQFKEKYDYVGRL 224
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 48,618,728
Number of extensions: 1524855
Number of successful extensions: 7272
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 7191
Number of HSP's successfully gapped: 4
Length of query: 375
Length of database: 18,297,164
Length adjustment: 104
Effective length of query: 271
Effective length of database: 14,868,908
Effective search space: 4029474068
Effective search space used: 4029474068
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-004052
(1126 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001020097.2| neuferricin [Mus musculus]. 401 e-112
Alignment gi|NP_079700.1| neudesin precursor [Mus musculus]. 79 5e-15
Alignment gi|NP_058063.2| membrane-associated progesterone receptor compo... 77 3e-14
Alignment gi|NP_081834.1| membrane-associated progesterone receptor compo... 72 8e-13
>ref|NP_001020097.2| neuferricin [Mus musculus].
Length = 263
Score = 401 bits (1030), Expect = e-112
Identities = 183/236 (77%), Positives = 206/236 (87%)
Frame = +1
Query: 373 WWSPRADFRLFIPEELARYRGRPGDPGLYLALLGRVYDVSSGRRHYEPGAPYSGFAGRDA 552
WW PR RLF+PEELARYRG PGDPGLYLALLGRVYDVSSGRRHYEPGA YSGFAGRDA
Sbjct: 28 WWGPRPGIRLFLPEELARYRGGPGDPGLYLALLGRVYDVSSGRRHYEPGAHYSGFAGRDA 87
Query: 553 SRAFVTGDYSETGLVDDVSDLSFSEMLTLQNWLSFYEKNYEFIGRVSGRFYGQDGLPTPE 732
SRAFVTGDYSE GLVDD++ LS SE+LTL NWLSFYEKNY F+GR+ GRFY +DGLPT E
Sbjct: 88 SRAFVTGDYSEAGLVDDINGLSSSEILTLHNWLSFYEKNYVFVGRLVGRFYRKDGLPTSE 147
Query: 733 LTRTEAMIARGVQANKQDLEEKQRFPPCNAEWSSARGSRLWCSPKSGGVSRDWTGVPRKL 912
LT+ EAM+ +G++AN+Q+ EKQ+FPPCN+EWSSA+GSRLWCS KSGGV RDW GVPRKL
Sbjct: 148 LTQVEAMVTKGMEANEQEQREKQKFPPCNSEWSSAKGSRLWCSQKSGGVHRDWIGVPRKL 207
Query: 913 FKPGAKEPHCVCVKTTGAPSDQTPDSPPHRNRGDLDHPSLAEYPGCPPLATSCSLP 1080
+KPGAKEPHCVCV+TTG PSDQ D+P H N GDLD+P+L EY GCPPLAT+CS P
Sbjct: 208 YKPGAKEPHCVCVRTTGPPSDQ-QDNPRHSNHGDLDNPNLEEYTGCPPLATTCSFP 262
>ref|NP_079700.1| neudesin precursor [Mus musculus].
Length = 171
Score = 79.3 bits (194), Expect = 5e-15
Identities = 43/110 (39%), Positives = 59/110 (53%), Gaps = 1/110 (0%)
Frame = +1
Query: 397 RLFIPEELARYRGRPGDPGLYLALLGRVYDVSSGRRHYEPGAPYSGFAGRDASRAFVTGD 576
RLF EELARY G D +YLA+ G V+DV+SG+ Y GAPY+ AG+D+SR
Sbjct: 44 RLFTEEELARYGGEEEDQPIYLAVKGVVFDVTSGKEFYGRGAPYNALAGKDSSRGVAKMS 103
Query: 577 YSETGLVDDVSDLSFSEMLTLQNWLS-FYEKNYEFIGRVSGRFYGQDGLP 723
L D + L+ E+ L + S Y+ Y +G + R +DG P
Sbjct: 104 LDPADLTHDTTGLTAKELEALDDVFSKVYKAKYPIVGYTARRILNEDGSP 153
>ref|NP_058063.2| membrane-associated progesterone receptor component 1 [Mus
musculus].
Length = 195
Score = 76.6 bits (187), Expect = 3e-14
Identities = 48/128 (37%), Positives = 66/128 (51%), Gaps = 8/128 (6%)
Frame = +1
Query: 382 PRADFRLFIPEELARYRGRPGDPGLYLALLGRVYDVSSGRRHYEPGAPYSGFAGRDASRA 561
PR R F P EL R+ G DP + +A+ G+V+DV+ GR+ Y P PY FAGRDASR
Sbjct: 66 PRLKRRDFTPAELRRFDGVQ-DPRILMAINGKVFDVTKGRKFYGPEGPYGVFAGRDASRG 124
Query: 562 FVTGDYSETGL---VDDVSDLSFSEMLTLQNWLSFYEKNYEFIGRV-----SGRFYGQDG 717
T + L DD+SDL+ ++ TL +W S + Y +G++ Y D
Sbjct: 125 LATFCLDKEALKDEYDDLSDLTPAQQETLSDWDSQFTFKYHHVGKLLKEGEEPTVYSDDE 184
Query: 718 LPTPELTR 741
P E R
Sbjct: 185 EPKDETAR 192
>ref|NP_081834.1| membrane-associated progesterone receptor component 2 [Mus
musculus].
Length = 217
Score = 72.0 bits (175), Expect = 8e-13
Identities = 40/106 (37%), Positives = 62/106 (58%), Gaps = 3/106 (2%)
Frame = +1
Query: 382 PRADFRLFIPEELARYRGRPGDPGLYLALLGRVYDVSSGRRHYEPGAPYSGFAGRDASRA 561
PR R F E+L +Y G P + LA+ G+V+DV+ G + Y P PY FAGRDASR
Sbjct: 90 PRMKKRDFSLEQLRQYDGAR-TPRILLAVNGKVFDVTKGSKFYGPAGPYGIFAGRDASRG 148
Query: 562 FVTGDYSETGL---VDDVSDLSFSEMLTLQNWLSFYEKNYEFIGRV 690
T + L DD+SDL+ +M +++ W +++ Y+++GR+
Sbjct: 149 LATFCLDKDALRDEYDDLSDLNAVQMESVREWEMQFKEKYDYVGRL 194
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 40,779,239
Number of extensions: 1249445
Number of successful extensions: 5760
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 5708
Number of HSP's successfully gapped: 4
Length of query: 375
Length of database: 15,617,559
Length adjustment: 103
Effective length of query: 272
Effective length of database: 12,523,851
Effective search space: 3406487472
Effective search space used: 3406487472
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-004052
(1126 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_003131918.1| PREDICTED: neuferricin-like [Sus scrofa]. 509 e-144
Alignment gi|NP_999076.1| membrane-associated progesterone receptor compo... 76 4e-14
Alignment gi|XP_003357640.1| PREDICTED: neudesin-like [Sus scrofa]. 75 7e-14
Alignment gi|NP_001090990.2| membrane-associated progesterone receptor co... 72 6e-13
Alignment gi|XP_003130463.1| PREDICTED: neudesin-like [Sus scrofa]. 59 5e-09
>ref|XP_003131918.1| PREDICTED: neuferricin-like [Sus scrofa].
Length = 264
Score = 509 bits (1310), Expect = e-144
Identities = 238/238 (100%), Positives = 238/238 (100%)
Frame = +1
Query: 367 TGWWSPRADFRLFIPEELARYRGRPGDPGLYLALLGRVYDVSSGRRHYEPGAPYSGFAGR 546
TGWWSPRADFRLFIPEELARYRGRPGDPGLYLALLGRVYDVSSGRRHYEPGAPYSGFAGR
Sbjct: 26 TGWWSPRADFRLFIPEELARYRGRPGDPGLYLALLGRVYDVSSGRRHYEPGAPYSGFAGR 85
Query: 547 DASRAFVTGDYSETGLVDDVSDLSFSEMLTLQNWLSFYEKNYEFIGRVSGRFYGQDGLPT 726
DASRAFVTGDYSETGLVDDVSDLSFSEMLTLQNWLSFYEKNYEFIGRVSGRFYGQDGLPT
Sbjct: 86 DASRAFVTGDYSETGLVDDVSDLSFSEMLTLQNWLSFYEKNYEFIGRVSGRFYGQDGLPT 145
Query: 727 PELTRTEAMIARGVQANKQDLEEKQRFPPCNAEWSSARGSRLWCSPKSGGVSRDWTGVPR 906
PELTRTEAMIARGVQANKQDLEEKQRFPPCNAEWSSARGSRLWCSPKSGGVSRDWTGVPR
Sbjct: 146 PELTRTEAMIARGVQANKQDLEEKQRFPPCNAEWSSARGSRLWCSPKSGGVSRDWTGVPR 205
Query: 907 KLFKPGAKEPHCVCVKTTGAPSDQTPDSPPHRNRGDLDHPSLAEYPGCPPLATSCSLP 1080
KLFKPGAKEPHCVCVKTTGAPSDQTPDSPPHRNRGDLDHPSLAEYPGCPPLATSCSLP
Sbjct: 206 KLFKPGAKEPHCVCVKTTGAPSDQTPDSPPHRNRGDLDHPSLAEYPGCPPLATSCSLP 263
>ref|NP_999076.1| membrane-associated progesterone receptor component 1 [Sus scrofa].
Length = 194
Score = 75.9 bits (185), Expect = 4e-14
Identities = 43/106 (40%), Positives = 61/106 (57%), Gaps = 3/106 (2%)
Frame = +1
Query: 382 PRADFRLFIPEELARYRGRPGDPGLYLALLGRVYDVSSGRRHYEPGAPYSGFAGRDASRA 561
PR R F P EL R+ G DP + +A+ G+V+DV+ GR+ Y P PY FAGRDASR
Sbjct: 65 PRLKRRDFTPAELRRFDGVQ-DPRILMAINGKVFDVTKGRKFYGPEGPYGVFAGRDASRG 123
Query: 562 FVTGDYSETGL---VDDVSDLSFSEMLTLQNWLSFYEKNYEFIGRV 690
T + L DD+SDL+ ++ TL +W S + Y +G++
Sbjct: 124 LATFCLDKEALKDEYDDLSDLTPAQQETLNDWDSQFTFKYHHVGKL 169
>ref|XP_003357640.1| PREDICTED: neudesin-like [Sus scrofa].
Length = 169
Score = 75.1 bits (183), Expect = 7e-14
Identities = 39/110 (35%), Positives = 59/110 (53%), Gaps = 1/110 (0%)
Frame = +1
Query: 397 RLFIPEELARYRGRPGDPGLYLALLGRVYDVSSGRRHYEPGAPYSGFAGRDASRAFVTGD 576
RLF EELARY G D +Y+A+ G V+DV+SG+ Y GAPY+ G+D++R
Sbjct: 42 RLFTEEELARYGGDEEDQPIYMAVKGVVFDVTSGKEFYGRGAPYNALTGKDSTRGVAKMS 101
Query: 577 YSETGLVDDVSDLSFSEMLTLQN-WLSFYEKNYEFIGRVSGRFYGQDGLP 723
L D + L+ E+ +L + + Y+ Y +G + R +DG P
Sbjct: 102 LDPADLTHDTTGLTAEELQSLDDVFTRVYKAKYPIVGYTARRILNEDGSP 151
>ref|NP_001090990.2| membrane-associated progesterone receptor component 2 [Sus scrofa].
Length = 223
Score = 72.0 bits (175), Expect = 6e-13
Identities = 40/106 (37%), Positives = 62/106 (58%), Gaps = 3/106 (2%)
Frame = +1
Query: 382 PRADFRLFIPEELARYRGRPGDPGLYLALLGRVYDVSSGRRHYEPGAPYSGFAGRDASRA 561
PR R F E+L +Y G P + LA+ G+V+DV+ G + Y P PY FAGRDASR
Sbjct: 96 PRMKKRDFSLEQLRQYDGSR-TPRILLAVNGKVFDVTKGSKFYGPAGPYGIFAGRDASRG 154
Query: 562 FVTGDYSETGL---VDDVSDLSFSEMLTLQNWLSFYEKNYEFIGRV 690
T + L DD+SDL+ +M +++ W +++ Y+++GR+
Sbjct: 155 LATFCLDKDALKDEYDDLSDLNAVQMESVREWEMQFKEKYDYVGRL 200
>ref|XP_003130463.1| PREDICTED: neudesin-like [Sus scrofa].
Length = 232
Score = 58.9 bits (141), Expect = 5e-09
Identities = 29/94 (30%), Positives = 49/94 (52%), Gaps = 1/94 (1%)
Frame = +1
Query: 445 DPGLYLALLGRVYDVSSGRRHYEPGAPYSGFAGRDASRAFVTGDYSETGLVDDVSDLSFS 624
D +Y+A+ G V+DV+SG+ Y GAPY+ G+D++R L D + L+
Sbjct: 121 DQPIYMAVKGVVFDVTSGKEFYGRGAPYNALTGKDSTRGVAKMSLDPADLTHDTTGLTAE 180
Query: 625 EMLTLQN-WLSFYEKNYEFIGRVSGRFYGQDGLP 723
E+ +L + + Y+ Y +G + R +DG P
Sbjct: 181 ELQSLDDVFTRVYKAKYPIVGYTARRILNEDGSP 214
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 30,898,242
Number of extensions: 985618
Number of successful extensions: 4801
Number of sequences better than 1.0e-05: 5
Number of HSP's gapped: 4766
Number of HSP's successfully gapped: 5
Length of query: 375
Length of database: 11,343,932
Length adjustment: 101
Effective length of query: 274
Effective length of database: 8,829,335
Effective search space: 2419237790
Effective search space used: 2419237790
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-004052
(1126 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr12 569 e-159
>Sscrofa_Chr12
|| Length = 63588571
Score = 569 bits (287), Expect = e-159
Identities = 287/287 (100%)
Strand = Plus / Plus
Query: 12 atctttgttgggggcggcaacttgagggcccagaaagcttgtcgctgctcactttctcgg 71
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 52112665 atctttgttgggggcggcaacttgagggcccagaaagcttgtcgctgctcactttctcgg 52112724
Query: 72 tatcgttccacgttcactacctatgctggtaaagtacgagaaagagttggagctaagtag 131
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 52112725 tatcgttccacgttcactacctatgctggtaaagtacgagaaagagttggagctaagtag 52112784
Query: 132 tgacgcttttgccaaagacttccctttccgtggtccccttaacgacaggaggacacggga 191
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 52112785 tgacgcttttgccaaagacttccctttccgtggtccccttaacgacaggaggacacggga 52112844
Query: 192 gagcgcgcgtcgcgccgatgacgttgcggcggctcctccaccatcttggttgtggacgga 251
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 52112845 gagcgcgcgtcgcgccgatgacgttgcggcggctcctccaccatcttggttgtggacgga 52112904
Query: 252 ggtggcaacttcggagcagcggaggggtacagctgtctaaatgccga 298
|||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 52112905 ggtggcaacttcggagcagcggaggggtacagctgtctaaatgccga 52112951
Score = 494 bits (249), Expect = e-137
Identities = 258/260 (99%), Gaps = 1/260 (0%)
Strand = Plus / Plus
Query: 868 agtggaggtgtgagcagagactggactggagtccccaggaagctgtttaagccaggtgcc 927
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 52119784 agtggaggtgtgagcagagactggactggagtccccaggaagctgtttaagccaggtgcc 52119843
Query: 928 aaggagccccactgcgtgtgcgtgaaaacaaccggcgcccctagcgaccagacgccggac 987
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 52119844 aaggagccccactgcgtgtgcgtgaaaacaaccggcgcccctagcgaccagacgccggac 52119903
Query: 988 agccccccacacaggaatcgtggggacttggaccaccccagcttggccgagtacccaggc 1047
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 52119904 agccccccacacaggaatcgtggggacttggaccaccccagcttggccgagtacccaggc 52119963
Query: 1048 tgcccacccctggccacctcgtgctccct-cccctctaaagtggttccctgtatgctgcc 1106
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 52119964 tgcccacccctggccacctcgtgctccctccccctctaaagtggttccctgtatgctgcc 52120023
Query: 1107 cacccaccnagagccctgcc 1126
|||||||| |||||||||||
Sbjct: 52120024 cacccaccaagagccctgcc 52120043
Score = 373 bits (188), Expect = e-100
Identities = 188/188 (100%)
Strand = Plus / Plus
Query: 682 ggaagggtgagcggacgcttctatggccaggatgggctgcccaccccagaactgacccgg 741
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 52117121 ggaagggtgagcggacgcttctatggccaggatgggctgcccaccccagaactgacccgg 52117180
Query: 742 acagaagccatgatcgcccgaggcgtgcaggcaaataagcaggacctggaagagaagcag 801
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 52117181 acagaagccatgatcgcccgaggcgtgcaggcaaataagcaggacctggaagagaagcag 52117240
Query: 802 aggttccccccgtgcaatgccgagtggagctccgcccggggcagccgcctctggtgttcc 861
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 52117241 aggttccccccgtgcaatgccgagtggagctccgcccggggcagccgcctctggtgttcc 52117300
Query: 862 ccgaagag 869
||||||||
Sbjct: 52117301 ccgaagag 52117308
Score = 371 bits (187), Expect = e-100
Identities = 190/191 (99%)
Strand = Plus / Plus
Query: 352 atgatcgctcggctgacaggctggtggagtccccgcgctgacttccgccttttcataccc 411
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 52113005 atgatcgctcggctgacaggctggtggagtccccgcgctgacttccgccttttcataccc 52113064
Query: 412 gaggagctggcccgctatcgcggccgccctggggacccgggcctctacttggccttgctc 471
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 52113065 gaggagctggcccgctatcgcggccgccctggggaccctggcctctacttggccttgctc 52113124
Query: 472 ggccgcgtctacgatgtgtcctctggccggaggcactacgaacctggggccccgtatagc 531
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 52113125 ggccgcgtctacgatgtgtcctctggccggaggcactacgaacctggggccccgtatagc 52113184
Query: 532 ggcttcgcagg 542
|||||||||||
Sbjct: 52113185 ggcttcgcagg 52113195
Score = 287 bits (145), Expect = 7e-75
Identities = 145/145 (100%)
Strand = Plus / Plus
Query: 539 caggccgagatgcatccagagcgtttgtgaccggggactactctgaaacaggccttgtgg 598
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 52115030 caggccgagatgcatccagagcgtttgtgaccggggactactctgaaacaggccttgtgg 52115089
Query: 599 atgatgtatctgacctgtcattttctgagatgctgacactccaaaactggctttcattct 658
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 52115090 atgatgtatctgacctgtcattttctgagatgctgacactccaaaactggctttcattct 52115149
Query: 659 acgagaagaattatgaattcattgg 683
|||||||||||||||||||||||||
Sbjct: 52115150 acgagaagaattatgaattcattgg 52115174
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 24,178,690
Number of extensions: 129
Number of successful extensions: 129
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 128
Number of HSP's successfully gapped: 5
Length of query: 1126
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1105
Effective length of database: 2,808,413,156
Effective search space: 3103296537380
Effective search space used: 3103296537380
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)