Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-004068
(928 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001033199.1| vasodilator-stimulated phosphoprotein [Bos t... 275 3e-74
Alignment gi|XP_002694044.1| PREDICTED: Enabled homolog (Drosophila)-like... 172 5e-43
Alignment gi|NP_001179013.1| ena/VASP-like protein [Bos taurus]. 168 5e-42
Alignment gi|XP_002696882.1| PREDICTED: Enah/Vasp-like [Bos taurus]. 156 2e-38
Alignment gi|XP_590728.4| PREDICTED: Enabled homolog (Drosophila)-like [B... 103 3e-22
Alignment gi|XP_002691493.1| PREDICTED: sprouty-related, EVH1 domain cont... 63 3e-10
Alignment gi|XP_870472.2| PREDICTED: sprouty-related protein with EVH-1 d... 63 3e-10
Alignment gi|NP_001179445.1| sprouty-related, EVH1 domain-containing prot... 63 4e-10
Alignment gi|XP_002690829.1| PREDICTED: sprouty-related protein 1 with EV... 63 4e-10
Alignment gi|NP_001068935.1| homer protein homolog 2 [Bos taurus]. 54 1e-07
>ref|NP_001033199.1| vasodilator-stimulated phosphoprotein [Bos taurus].
Length = 383
Score = 275 bits (704), Expect = 3e-74
Identities = 143/199 (71%), Positives = 149/199 (74%), Gaps = 2/199 (1%)
Frame = +3
Query: 336 MSETVICSSRATVMLYDDSNKRWLPAGTGPQAFSRVQIYHNPTANSFRVVGRKMQPDQQV 515
MSETV+C+SRATVMLYDDSNKRWLPAGTGPQAFSRVQIYHNPTANSFRVVGRKMQPDQQV
Sbjct: 1 MSETVVCTSRATVMLYDDSNKRWLPAGTGPQAFSRVQIYHNPTANSFRVVGRKMQPDQQV 60
Query: 516 VINCAIVRGVKYNQATPNFHQWRDARQVWGLNFGSKEDATQFASGMASALEALEXXXXXX 695
VINCAIVRGVKYNQATPNFHQWRDARQVWGLNFGSKEDATQFA+GMASALEALE
Sbjct: 61 VINCAIVRGVKYNQATPNFHQWRDARQVWGLNFGSKEDATQFANGMASALEALEGGGPLP 120
Query: 696 XXXXXXXXTWSVQNGPAPEELEQQKRQQQPEHL--ERRVSNXXXXXXXXXXXXXXXXXXX 869
TWS QNGP+PEE+EQQKRQQQ E + ERR SN
Sbjct: 121 PPPPTAPPTWSAQNGPSPEEMEQQKRQQQSELMERERRASNAGGPPAASAGAPPPPPGPP 180
Query: 870 XXXXXXXXXXXSSSGVSAA 926
SSSGVSAA
Sbjct: 181 PPPGPPPPPGLSSSGVSAA 199
>ref|XP_002694044.1| PREDICTED: Enabled homolog (Drosophila)-like [Bos taurus].
Length = 570
Score = 172 bits (435), Expect = 5e-43
Identities = 92/158 (58%), Positives = 109/158 (68%), Gaps = 1/158 (0%)
Frame = +3
Query: 336 MSETVICSSRATVMLYDDSNKRWLPAGTGPQAFSRVQIYHNPTANSFRVVGRKMQPDQQV 515
MSE IC +RA VM+YDD+NK+W+PAG G FSRV IYH+ N+FRVVGRK+Q D QV
Sbjct: 1 MSEQSICQARAAVMVYDDANKKWVPAG-GSTGFSRVHIYHHTGNNTFRVVGRKIQ-DHQV 58
Query: 516 VINCAIVRGVKYNQATPNFHQWRDARQVWGLNFGSKEDATQFASGMASALEAL-EXXXXX 692
VINCAI +G+KYNQAT FHQWRDARQV+GLNFGSKEDA FAS M ALE L
Sbjct: 59 VINCAIPKGLKYNQATQTFHQWRDARQVYGLNFGSKEDANVFASAMMHALEVLNSQETGP 118
Query: 693 XXXXXXXXXTWSVQNGPAPEELEQQKRQQQPEHLERRV 806
VQNGP+ EELE Q+RQ Q + ++ +
Sbjct: 119 TLPRQNSQLPAQVQNGPSQEELEIQRRQLQEQQRQKEL 156
>ref|NP_001179013.1| ena/VASP-like protein [Bos taurus].
Length = 419
Score = 168 bits (426), Expect = 5e-42
Identities = 88/166 (53%), Positives = 113/166 (68%), Gaps = 7/166 (4%)
Frame = +3
Query: 333 AMSETVICSSRATVMLYDDSNKRWLPAGTGPQAFSRVQIYHNPTANSFRVVGRKMQPDQQ 512
A E IC +RA+VM+YDD++K+W+P G Q FSR+ IYHN +N+FRVVG K+Q DQQ
Sbjct: 2 ASVEQSICQARASVMVYDDTSKKWVPIKPGQQGFSRINIYHNTASNTFRVVGVKLQ-DQQ 60
Query: 513 VVINCAIVRGVKYNQATPNFHQWRDARQVWGLNFGSKEDATQFASGMASALEALEXXXXX 692
VVIN +IV+G+KYNQATP FHQWRDARQV+GLNF SKE+AT F++ M AL +
Sbjct: 61 VVINYSIVKGLKYNQATPTFHQWRDARQVYGLNFASKEEATTFSNAMLFALNIMNSQEGG 120
Query: 693 XXXXXXXXXTWSVQNGPAPEELEQQKR-------QQQPEHLERRVS 809
VQNGP+P+E++ Q+R QQ+ E LERR S
Sbjct: 121 PSSQR------QVQNGPSPDEMDVQRRQVMEQQHQQRQESLERRAS 160
>ref|XP_002696882.1| PREDICTED: Enah/Vasp-like [Bos taurus].
Length = 404
Score = 156 bits (395), Expect = 2e-38
Identities = 81/152 (53%), Positives = 104/152 (68%), Gaps = 7/152 (4%)
Frame = +3
Query: 375 MLYDDSNKRWLPAGTGPQAFSRVQIYHNPTANSFRVVGRKMQPDQQVVINCAIVRGVKYN 554
M+YDD++K+W+P G Q FSR+ IYHN +N+FRVVG K+Q DQQVVIN +IV+G+KYN
Sbjct: 1 MVYDDTSKKWVPIKPGQQGFSRINIYHNTASNTFRVVGVKLQ-DQQVVINYSIVKGLKYN 59
Query: 555 QATPNFHQWRDARQVWGLNFGSKEDATQFASGMASALEALEXXXXXXXXXXXXXXTWSVQ 734
QATP FHQWRDARQV+GLNF SKE+AT F++ M AL + VQ
Sbjct: 60 QATPTFHQWRDARQVYGLNFASKEEATTFSNAMLFALNIMNSQEGGPSSQR------QVQ 113
Query: 735 NGPAPEELEQQKR-------QQQPEHLERRVS 809
NGP+P+E++ Q+R QQ+ E LERR S
Sbjct: 114 NGPSPDEMDVQRRQVMEQQHQQRQESLERRAS 145
>ref|XP_590728.4| PREDICTED: Enabled homolog (Drosophila)-like [Bos taurus].
Length = 529
Score = 103 bits (256), Expect = 3e-22
Identities = 55/99 (55%), Positives = 64/99 (64%), Gaps = 1/99 (1%)
Frame = +3
Query: 513 VVINCAIVRGVKYNQATPNFHQWRDARQVWGLNFGSKEDATQFASGMASALEAL-EXXXX 689
VVINCAI +G+KYNQAT FHQWRDARQV+GLNFGSKEDA FAS M ALE L
Sbjct: 17 VVINCAIPKGLKYNQATQTFHQWRDARQVYGLNFGSKEDANVFASAMMHALEVLNSQETG 76
Query: 690 XXXXXXXXXXTWSVQNGPAPEELEQQKRQQQPEHLERRV 806
VQNGP+ EELE Q+RQ Q + ++ +
Sbjct: 77 PTLPRQNSQLPAQVQNGPSQEELEIQRRQLQEQQRQKEL 115
>ref|XP_002691493.1| PREDICTED: sprouty-related, EVH1 domain containing 2-like [Bos
taurus].
Length = 575
Score = 63.2 bits (152), Expect = 3e-10
Identities = 42/126 (33%), Positives = 62/126 (49%), Gaps = 5/126 (3%)
Frame = +3
Query: 312 APPASRAAMSETVICSSRATVMLYDDSNKRWLPAGTGPQAFSRVQIYH--NPTANS---F 476
A PA+ ++ I +A VM DDS+ W P G SRV + +P N F
Sbjct: 158 AVPATATFFFDSYIVRVKAVVMTRDDSSGGWFPQEGG--GISRVGVCKVMHPEGNGRSGF 215
Query: 477 RVVGRKMQPDQQVVINCAIVRGVKYNQATPNFHQWRDARQVWGLNFGSKEDATQFASGMA 656
+ G + Q D+ VV+ C + + + Y +A P FH W+ + +GL F S DA F G+
Sbjct: 216 LIHGER-QKDKLVVLECYVRKDLVYTKANPTFHHWKVDNRKFGLTFQSPADARAFDRGVR 274
Query: 657 SALEAL 674
A+E L
Sbjct: 275 KAIEDL 280
>ref|XP_870472.2| PREDICTED: sprouty-related protein with EVH-1 domain 2 isoform 3
[Bos taurus].
Length = 575
Score = 63.2 bits (152), Expect = 3e-10
Identities = 42/126 (33%), Positives = 62/126 (49%), Gaps = 5/126 (3%)
Frame = +3
Query: 312 APPASRAAMSETVICSSRATVMLYDDSNKRWLPAGTGPQAFSRVQIYH--NPTANS---F 476
A PA+ ++ I +A VM DDS+ W P G SRV + +P N F
Sbjct: 158 AVPATATFFFDSYIVRVKAVVMTRDDSSGGWFPQEGG--GISRVGVCKVMHPEGNGRSGF 215
Query: 477 RVVGRKMQPDQQVVINCAIVRGVKYNQATPNFHQWRDARQVWGLNFGSKEDATQFASGMA 656
+ G + Q D+ VV+ C + + + Y +A P FH W+ + +GL F S DA F G+
Sbjct: 216 LIHGER-QKDKLVVLECYVRKDLVYTKANPTFHHWKVDNRKFGLTFQSPADARAFDRGVR 274
Query: 657 SALEAL 674
A+E L
Sbjct: 275 KAIEDL 280
>ref|NP_001179445.1| sprouty-related, EVH1 domain-containing protein 1 [Bos taurus].
Length = 443
Score = 62.8 bits (151), Expect = 4e-10
Identities = 36/105 (34%), Positives = 56/105 (53%), Gaps = 3/105 (2%)
Frame = +3
Query: 363 RATVMLYDDSNKRWLP-AGTGPQAFSRVQIYHNPTAN--SFRVVGRKMQPDQQVVINCAI 533
RA VM DDS+ WLP G+G + ++ H F + G +++ D+ VV+ C +
Sbjct: 18 RAVVMTRDDSSGGWLPLGGSGLSCVTVFKVPHQEENGCADFFIRGERLR-DKMVVLECML 76
Query: 534 VRGVKYNQATPNFHQWRDARQVWGLNFGSKEDATQFASGMASALE 668
+ + YN+ TP FH W+ + +GL F S DA F G+ A+E
Sbjct: 77 KKDLIYNKVTPTFHHWKIDDKKFGLTFQSPADARAFDRGIRRAIE 121
>ref|XP_002690829.1| PREDICTED: sprouty-related protein 1 with EVH-1 domain-like [Bos
taurus].
Length = 443
Score = 62.8 bits (151), Expect = 4e-10
Identities = 36/105 (34%), Positives = 56/105 (53%), Gaps = 3/105 (2%)
Frame = +3
Query: 363 RATVMLYDDSNKRWLP-AGTGPQAFSRVQIYHNPTAN--SFRVVGRKMQPDQQVVINCAI 533
RA VM DDS+ WLP G+G + ++ H F + G +++ D+ VV+ C +
Sbjct: 18 RAVVMTRDDSSGGWLPLGGSGLSCVTVFKVPHQEENGCADFFIRGERLR-DKMVVLECML 76
Query: 534 VRGVKYNQATPNFHQWRDARQVWGLNFGSKEDATQFASGMASALE 668
+ + YN+ TP FH W+ + +GL F S DA F G+ A+E
Sbjct: 77 KKDLIYNKVTPTFHHWKIDDKKFGLTFQSPADARAFDRGIRRAIE 121
>ref|NP_001068935.1| homer protein homolog 2 [Bos taurus].
Length = 343
Score = 54.3 bits (129), Expect = 1e-07
Identities = 37/115 (32%), Positives = 60/115 (52%), Gaps = 3/115 (2%)
Frame = +3
Query: 336 MSETVICSSRATVMLYDDSNKR-WLPAGTGPQAFSRVQIYHNPTANSFRVVGRKMQPDQQ 512
M E I ++RA V D + K+ W+PA QA + V +++ T NS+R++ +
Sbjct: 1 MGEQPIFTTRAHVFQIDPNTKKNWVPASK--QAVT-VSYFYDVTRNSYRIIS---VDGAK 54
Query: 513 VVINCAIVRGVKYNQATPNFHQWRDAR--QVWGLNFGSKEDATQFASGMASALEA 671
V+IN I + + + + F QW D+R V+GL F S++ T+FA EA
Sbjct: 55 VIINSTITPNMTFTKTSQKFGQWADSRANTVFGLGFSSEQQLTKFAEKFQEVKEA 109
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 35,051,030
Number of extensions: 1181952
Number of successful extensions: 8337
Number of sequences better than 1.0e-05: 10
Number of HSP's gapped: 8156
Number of HSP's successfully gapped: 10
Length of query: 309
Length of database: 17,681,374
Length adjustment: 102
Effective length of query: 207
Effective length of database: 14,306,398
Effective search space: 2961424386
Effective search space used: 2961424386
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-004068
(928 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001003256.1| vasodilator-stimulated phosphoprotein [Canis... 270 2e-72
Alignment gi|XP_537553.2| PREDICTED: similar to Enah/Vasp-like [Canis fam... 171 9e-43
Alignment gi|XP_547511.2| PREDICTED: similar to Enabled protein homolog [... 171 1e-42
Alignment gi|XP_541558.2| PREDICTED: similar to protein phosphatase 1B, m... 113 2e-25
Alignment gi|XP_855002.1| PREDICTED: similar to Vasodilator-stimulated ph... 110 1e-24
Alignment gi|XP_544609.2| PREDICTED: similar to sprouty-related protein 1... 63 4e-10
Alignment gi|XP_866218.1| PREDICTED: similar to sprouty-related protein w... 61 1e-09
Alignment gi|XP_538517.2| PREDICTED: similar to sprouty-related protein w... 61 1e-09
Alignment gi|XP_855400.1| PREDICTED: similar to Sprouty-related EVH1 doma... 57 3e-08
Alignment gi|XP_541929.2| PREDICTED: similar to Homer, neuronal immediate... 53 4e-07
>ref|NP_001003256.1| vasodilator-stimulated phosphoprotein [Canis lupus familiaris].
Length = 384
Score = 270 bits (689), Expect = 2e-72
Identities = 135/161 (83%), Positives = 139/161 (86%), Gaps = 2/161 (1%)
Frame = +3
Query: 336 MSETVICSSRATVMLYDDSNKRWLPAGTGPQAFSRVQIYHNPTANSFRVVGRKMQPDQQV 515
MSETVICSS ATVMLYDDSNKRWLPAGTGPQ+FSRVQIYHNPTANSFRVVG KMQPDQQV
Sbjct: 1 MSETVICSSWATVMLYDDSNKRWLPAGTGPQSFSRVQIYHNPTANSFRVVGWKMQPDQQV 60
Query: 516 VINCAIVRGVKYNQATPNFHQWRDARQVWGLNFGSKEDATQFASGMASALEALEXXXXXX 695
VINCAIVRG+KYNQATP FHQWRDARQVWGLNFGSKEDATQFA+ MASALEALE
Sbjct: 61 VINCAIVRGIKYNQATPTFHQWRDARQVWGLNFGSKEDATQFAAAMASALEALEGGGPPP 120
Query: 696 XXXXXXXXTWSVQNGPAPEELEQQKRQQ--QPEHLERRVSN 812
TWSVQNGPA EE+EQQKRQQ PEHLERRVSN
Sbjct: 121 PPPPAAPPTWSVQNGPASEEVEQQKRQQPGPPEHLERRVSN 161
>ref|XP_537553.2| PREDICTED: similar to Enah/Vasp-like [Canis familiaris].
Length = 419
Score = 171 bits (433), Expect = 9e-43
Identities = 90/167 (53%), Positives = 113/167 (67%), Gaps = 8/167 (4%)
Frame = +3
Query: 333 AMSETVICSSRATVMLYDDSNKRWLPAGTGPQAFSRVQIYHNPTANSFRVVGRKMQPDQQ 512
A E IC +RA+VM+YDD++K+W+P G Q FSR+ IYHN +N+FRVVG K+Q DQQ
Sbjct: 2 ATGEQSICQARASVMVYDDTSKKWVPIKPGQQGFSRINIYHNTASNTFRVVGVKLQ-DQQ 60
Query: 513 VVINCAIVRGVKYNQATPNFHQWRDARQVWGLNFGSKEDATQFASGMASALEALEXXXXX 692
VVIN +IV+G+KYNQATP FHQWRDARQV+GLNF SKE+AT F++ M AL +
Sbjct: 61 VVINYSIVKGLKYNQATPTFHQWRDARQVYGLNFASKEEATTFSNAMLFALNIMNSQEGG 120
Query: 693 XXXXXXXXXTWSVQNGPAPEE--------LEQQKRQQQPEHLERRVS 809
VQNGP+PEE +EQQ +QQ+ E LERR S
Sbjct: 121 PSTQR------QVQNGPSPEEMDIQRRQVMEQQHQQQRQESLERRTS 161
>ref|XP_547511.2| PREDICTED: similar to Enabled protein homolog [Canis familiaris].
Length = 806
Score = 171 bits (432), Expect = 1e-42
Identities = 94/170 (55%), Positives = 111/170 (65%), Gaps = 5/170 (2%)
Frame = +3
Query: 312 APPASRAAMSETVICSSRATVMLYDDSNKRWLPAGTGPQAFSRVQIYHNPTANSFRVVGR 491
A P R E IC +RA VM+YDD+NK+W+PAG G FSRV IYH+ N+FRVVGR
Sbjct: 2 AAPYLRCLGGEQSICQARAAVMVYDDANKKWVPAG-GSTGFSRVHIYHHTGNNTFRVVGR 60
Query: 492 KMQPDQQVVINCAIVRGVKYNQATPNFHQWRDARQVWGLNFGSKEDATQFASGMASALEA 671
K+Q D QVVINCAI +G+KYNQAT FHQWRDARQV+GLNFGSKEDA FAS M ALE
Sbjct: 61 KIQ-DHQVVINCAIPKGLKYNQATQTFHQWRDARQVYGLNFGSKEDANVFASAMMHALEV 119
Query: 672 LEXXXXXXXXXXXXXXTWS-----VQNGPAPEELEQQKRQQQPEHLERRV 806
L S VQNGP+ EELE Q+RQ Q + ++ +
Sbjct: 120 LNSQETVFYLGPTLPRQNSQLPAQVQNGPSQEELEIQRRQLQEQQRQKEL 169
>ref|XP_541558.2| PREDICTED: similar to protein phosphatase 1B, magnesium dependent,
beta isoform [Canis familiaris].
Length = 501
Score = 113 bits (283), Expect = 2e-25
Identities = 58/76 (76%), Positives = 60/76 (78%)
Frame = +1
Query: 4 GSGILERNVAKRSTVVRVTL*PPPAEGARRGGDAAPPFCRKDPGSAPQREEAPEDPRRPC 183
GSGILERNVAKRSTVVRVTL PPPAEGARRG DAAPPFCR+DP S QREEAPEDP RP
Sbjct: 414 GSGILERNVAKRSTVVRVTLYPPPAEGARRGRDAAPPFCRRDPRSNLQREEAPEDPPRPR 473
Query: 184 PRSPQEAGLYGAGPWG 231
PRSP + G G
Sbjct: 474 PRSPPGSRTLWGGTLG 489
Score = 59.3 bits (142), Expect = 5e-09
Identities = 25/25 (100%), Positives = 25/25 (100%)
Frame = +3
Query: 192 PPGSRTLWGGTLGETEQNLEPAPNP 266
PPGSRTLWGGTLGETEQNLEPAPNP
Sbjct: 477 PPGSRTLWGGTLGETEQNLEPAPNP 501
>ref|XP_855002.1| PREDICTED: similar to Vasodilator-stimulated phosphoprotein (VASP)
[Canis familiaris].
Length = 216
Score = 110 bits (276), Expect = 1e-24
Identities = 55/87 (63%), Positives = 61/87 (70%)
Frame = +3
Query: 480 VVGRKMQPDQQVVINCAIVRGVKYNQATPNFHQWRDARQVWGLNFGSKEDATQFASGMAS 659
VVGRK+QPDQQVVINCAIV G+KYNQATP FH+W + RQVWGLNFGSKED Q A+ + S
Sbjct: 4 VVGRKVQPDQQVVINCAIVWGIKYNQATPTFHRWCNTRQVWGLNFGSKEDDAQSAAAITS 63
Query: 660 ALEALEXXXXXXXXXXXXXXTWSVQNG 740
ALE LE T VQNG
Sbjct: 64 ALETLEGGEPPPPPPPVAPSTRGVQNG 90
>ref|XP_544609.2| PREDICTED: similar to sprouty-related protein 1 with EVH-1 domain
[Canis familiaris].
Length = 479
Score = 62.8 bits (151), Expect = 4e-10
Identities = 36/105 (34%), Positives = 56/105 (53%), Gaps = 3/105 (2%)
Frame = +3
Query: 363 RATVMLYDDSNKRWLP-AGTGPQAFSRVQIYHNPTAN--SFRVVGRKMQPDQQVVINCAI 533
RA VM DDS+ WLP G+G + ++ H F + G +++ D+ VV+ C +
Sbjct: 54 RAVVMTRDDSSGGWLPLGGSGLSCVTVFKVPHQEENGCADFFIRGERLR-DKMVVLECML 112
Query: 534 VRGVKYNQATPNFHQWRDARQVWGLNFGSKEDATQFASGMASALE 668
+ + YN+ TP FH W+ + +GL F S DA F G+ A+E
Sbjct: 113 KKDLIYNKVTPTFHHWKIDDKKFGLTFQSPADARAFDRGIRRAIE 157
>ref|XP_866218.1| PREDICTED: similar to sprouty-related protein with EVH-1 domain 2
isoform 3 [Canis familiaris].
Length = 410
Score = 61.2 bits (147), Expect = 1e-09
Identities = 40/117 (34%), Positives = 59/117 (50%), Gaps = 5/117 (4%)
Frame = +3
Query: 339 SETVICSSRATVMLYDDSNKRWLPAGTGPQAFSRVQIYH--NPTANS---FRVVGRKMQP 503
S++ I +A VM DDS+ W P G SRV + +P N F + G + Q
Sbjct: 6 SDSYIVRVKAVVMTRDDSSGGWFPQEGG--GISRVGVCKVMHPEGNGRSGFLIHGER-QK 62
Query: 504 DQQVVINCAIVRGVKYNQATPNFHQWRDARQVWGLNFGSKEDATQFASGMASALEAL 674
D+ VV+ C + + + Y +A P FH W+ + +GL F S DA F G+ A+E L
Sbjct: 63 DKLVVLECYVRKDLVYTKANPTFHHWKVDNRKFGLTFQSPADARAFDRGVRKAIEDL 119
>ref|XP_538517.2| PREDICTED: similar to sprouty-related protein with EVH-1 domain 2
isoform 1 [Canis familiaris].
Length = 414
Score = 61.2 bits (147), Expect = 1e-09
Identities = 40/117 (34%), Positives = 59/117 (50%), Gaps = 5/117 (4%)
Frame = +3
Query: 339 SETVICSSRATVMLYDDSNKRWLPAGTGPQAFSRVQIYH--NPTANS---FRVVGRKMQP 503
S++ I +A VM DDS+ W P G SRV + +P N F + G + Q
Sbjct: 6 SDSYIVRVKAVVMTRDDSSGGWFPQEGG--GISRVGVCKVMHPEGNGRSGFLIHGER-QK 62
Query: 504 DQQVVINCAIVRGVKYNQATPNFHQWRDARQVWGLNFGSKEDATQFASGMASALEAL 674
D+ VV+ C + + + Y +A P FH W+ + +GL F S DA F G+ A+E L
Sbjct: 63 DKLVVLECYVRKDLVYTKANPTFHHWKVDNRKFGLTFQSPADARAFDRGVRKAIEDL 119
>ref|XP_855400.1| PREDICTED: similar to Sprouty-related EVH1 domain-containing
protein [Canis familiaris].
Length = 429
Score = 56.6 bits (135), Expect = 3e-08
Identities = 36/112 (32%), Positives = 54/112 (48%), Gaps = 8/112 (7%)
Frame = +3
Query: 363 RATVMLYDDSNKRWLPAGTGPQAFSRVQIYHNPTANS--------FRVVGRKMQPDQQVV 518
RA VM DDS+ WLP G G S+V + A + + G +++ DQ+
Sbjct: 24 RAVVMARDDSSGGWLPVGGG--GLSQVSVCRVRGARPEGGARQGHYVIHGERLR-DQKTT 80
Query: 519 INCAIVRGVKYNQATPNFHQWRDARQVWGLNFGSKEDATQFASGMASALEAL 674
+ C + G+ YN+ P FH W +GL F S +A +F + +AL AL
Sbjct: 81 LECTLRPGLVYNKVNPIFHHWSLGDCKFGLTFQSPAEADEFQKSLLAALAAL 132
>ref|XP_541929.2| PREDICTED: similar to Homer, neuronal immediate early gene, 3
[Canis familiaris].
Length = 360
Score = 53.1 bits (126), Expect = 4e-07
Identities = 35/113 (30%), Positives = 55/113 (48%), Gaps = 3/113 (2%)
Frame = +3
Query: 342 ETVICSSRATVMLYDDSNKR-WLPAGTGPQAFSRVQIYHNPTANSFRVVGRKMQPDQQVV 518
E I S+RA V D + KR W+PAG V +++ T N +R++ + +
Sbjct: 6 EQPIFSTRAHVFQIDPATKRNWIPAGKHALT---VSYFYDATRNVYRIISIG---GAKAI 59
Query: 519 INCAIVRGVKYNQATPNFHQWRDARQ--VWGLNFGSKEDATQFASGMASALEA 671
IN + + + + + F QW D+R V+GL F S++ TQFA EA
Sbjct: 60 INSTVTPNMTFTKTSQKFGQWADSRANTVYGLGFASEQHLTQFAEKFQEVKEA 112
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 36,710,690
Number of extensions: 1233924
Number of successful extensions: 8969
Number of sequences better than 1.0e-05: 11
Number of HSP's gapped: 8772
Number of HSP's successfully gapped: 12
Length of query: 309
Length of database: 18,874,504
Length adjustment: 102
Effective length of query: 207
Effective length of database: 15,474,232
Effective search space: 3203166024
Effective search space used: 3203166024
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-004068
(928 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_003361.1| vasodilator-stimulated phosphoprotein [Homo sap... 270 1e-72
Alignment gi|NP_001008493.1| protein enabled homolog isoform a [Homo sapi... 172 5e-43
Alignment gi|NP_060682.2| protein enabled homolog isoform b [Homo sapiens]. 172 5e-43
Alignment gi|NP_057421.1| ena/VASP-like protein [Homo sapiens]. 170 1e-42
Alignment gi|NP_689807.1| sprouty-related, EVH1 domain-containing protein... 63 3e-10
Alignment gi|NP_001121682.1| sprouty-related, EVH1 domain-containing prot... 61 1e-09
Alignment gi|NP_861449.2| sprouty-related, EVH1 domain-containing protein... 60 4e-09
Alignment gi|NP_001035987.1| sprouty-related, EVH1 domain-containing prot... 57 2e-08
Alignment gi|NP_001034705.1| sprouty-related, EVH1 domain-containing prot... 57 2e-08
Alignment gi|NP_004830.2| homer protein homolog 2 isoform 1 [Homo sapiens]. 55 1e-07
>ref|NP_003361.1| vasodilator-stimulated phosphoprotein [Homo sapiens].
Length = 380
Score = 270 bits (690), Expect = 1e-72
Identities = 136/161 (84%), Positives = 140/161 (86%), Gaps = 2/161 (1%)
Frame = +3
Query: 336 MSETVICSSRATVMLYDDSNKRWLPAGTGPQAFSRVQIYHNPTANSFRVVGRKMQPDQQV 515
MSETVICSSRATVMLYDD NKRWLPAGTGPQAFSRVQIYHNPTANSFRVVGRKMQPDQQV
Sbjct: 1 MSETVICSSRATVMLYDDGNKRWLPAGTGPQAFSRVQIYHNPTANSFRVVGRKMQPDQQV 60
Query: 516 VINCAIVRGVKYNQATPNFHQWRDARQVWGLNFGSKEDATQFASGMASALEALEXXXXXX 695
VINCAIVRGVKYNQATPNFHQWRDARQVWGLNFGSKEDA QFA+GMASALEALE
Sbjct: 61 VINCAIVRGVKYNQATPNFHQWRDARQVWGLNFGSKEDAAQFAAGMASALEALE---GGG 117
Query: 696 XXXXXXXXTWSVQNGPAPEELEQQKRQQ--QPEHLERRVSN 812
TWSV NGP+PEE+EQQKRQQ EH+ERRVSN
Sbjct: 118 PPPPPALPTWSVPNGPSPEEVEQQKRQQPGPSEHIERRVSN 158
>ref|NP_001008493.1| protein enabled homolog isoform a [Homo sapiens].
Length = 591
Score = 172 bits (435), Expect = 5e-43
Identities = 92/158 (58%), Positives = 109/158 (68%), Gaps = 1/158 (0%)
Frame = +3
Query: 336 MSETVICSSRATVMLYDDSNKRWLPAGTGPQAFSRVQIYHNPTANSFRVVGRKMQPDQQV 515
MSE IC +RA VM+YDD+NK+W+PAG G FSRV IYH+ N+FRVVGRK+Q D QV
Sbjct: 1 MSEQSICQARAAVMVYDDANKKWVPAG-GSTGFSRVHIYHHTGNNTFRVVGRKIQ-DHQV 58
Query: 516 VINCAIVRGVKYNQATPNFHQWRDARQVWGLNFGSKEDATQFASGMASALEAL-EXXXXX 692
VINCAI +G+KYNQAT FHQWRDARQV+GLNFGSKEDA FAS M ALE L
Sbjct: 59 VINCAIPKGLKYNQATQTFHQWRDARQVYGLNFGSKEDANVFASAMMHALEVLNSQETGP 118
Query: 693 XXXXXXXXXTWSVQNGPAPEELEQQKRQQQPEHLERRV 806
VQNGP+ EELE Q+RQ Q + ++ +
Sbjct: 119 TLPRQNSQLPAQVQNGPSQEELEIQRRQLQEQQRQKEL 156
>ref|NP_060682.2| protein enabled homolog isoform b [Homo sapiens].
Length = 570
Score = 172 bits (435), Expect = 5e-43
Identities = 92/158 (58%), Positives = 109/158 (68%), Gaps = 1/158 (0%)
Frame = +3
Query: 336 MSETVICSSRATVMLYDDSNKRWLPAGTGPQAFSRVQIYHNPTANSFRVVGRKMQPDQQV 515
MSE IC +RA VM+YDD+NK+W+PAG G FSRV IYH+ N+FRVVGRK+Q D QV
Sbjct: 1 MSEQSICQARAAVMVYDDANKKWVPAG-GSTGFSRVHIYHHTGNNTFRVVGRKIQ-DHQV 58
Query: 516 VINCAIVRGVKYNQATPNFHQWRDARQVWGLNFGSKEDATQFASGMASALEAL-EXXXXX 692
VINCAI +G+KYNQAT FHQWRDARQV+GLNFGSKEDA FAS M ALE L
Sbjct: 59 VINCAIPKGLKYNQATQTFHQWRDARQVYGLNFGSKEDANVFASAMMHALEVLNSQETGP 118
Query: 693 XXXXXXXXXTWSVQNGPAPEELEQQKRQQQPEHLERRV 806
VQNGP+ EELE Q+RQ Q + ++ +
Sbjct: 119 TLPRQNSQLPAQVQNGPSQEELEIQRRQLQEQQRQKEL 156
>ref|NP_057421.1| ena/VASP-like protein [Homo sapiens].
Length = 418
Score = 170 bits (431), Expect = 1e-42
Identities = 89/166 (53%), Positives = 114/166 (68%), Gaps = 7/166 (4%)
Frame = +3
Query: 333 AMSETVICSSRATVMLYDDSNKRWLPAGTGPQAFSRVQIYHNPTANSFRVVGRKMQPDQQ 512
A SE IC +RA+VM+YDD++K+W+P G Q FSR+ IYHN +N+FRVVG K+Q DQQ
Sbjct: 2 ATSEQSICQARASVMVYDDTSKKWVPIKPGQQGFSRINIYHNTASNTFRVVGVKLQ-DQQ 60
Query: 513 VVINCAIVRGVKYNQATPNFHQWRDARQVWGLNFGSKEDATQFASGMASALEALEXXXXX 692
VVIN +IV+G+KYNQATP FHQWRDARQV+GLNF SKE+AT F++ M AL +
Sbjct: 61 VVINYSIVKGLKYNQATPTFHQWRDARQVYGLNFASKEEATTFSNAMLFALNIMNSQEGG 120
Query: 693 XXXXXXXXXTWSVQNGPAPEELEQQKR-------QQQPEHLERRVS 809
VQNGP+P+E++ Q+R QQ+ E LERR S
Sbjct: 121 PSSQR------QVQNGPSPDEMDIQRRQVMEQHQQQRQESLERRTS 160
>ref|NP_689807.1| sprouty-related, EVH1 domain-containing protein 1 [Homo sapiens].
Length = 444
Score = 63.2 bits (152), Expect = 3e-10
Identities = 36/105 (34%), Positives = 57/105 (54%), Gaps = 3/105 (2%)
Frame = +3
Query: 363 RATVMLYDDSNKRWLP-AGTGPQAFSRVQIYHNPTAN--SFRVVGRKMQPDQQVVINCAI 533
RA VM DDS+ WLP G+G + + ++ H F + G +++ D+ VV+ C +
Sbjct: 18 RAVVMTRDDSSGGWLPLGGSGLSSVTVFKVPHQEENGCADFFIRGERLR-DKMVVLECML 76
Query: 534 VRGVKYNQATPNFHQWRDARQVWGLNFGSKEDATQFASGMASALE 668
+ + YN+ TP FH W+ + +GL F S DA F G+ A+E
Sbjct: 77 KKDLIYNKVTPTFHHWKIDDKKFGLTFQSPADARAFDRGIRRAIE 121
>ref|NP_001121682.1| sprouty-related, EVH1 domain-containing protein 2 isoform b [Homo
sapiens].
Length = 415
Score = 61.2 bits (147), Expect = 1e-09
Identities = 40/117 (34%), Positives = 59/117 (50%), Gaps = 5/117 (4%)
Frame = +3
Query: 339 SETVICSSRATVMLYDDSNKRWLPAGTGPQAFSRVQIYH--NPTANS---FRVVGRKMQP 503
S++ I +A VM DDS+ W P G SRV + +P N F + G + Q
Sbjct: 6 SDSYIVRVKAVVMTRDDSSGGWFPQEGG--GISRVGVCKVMHPEGNGRSGFLIHGER-QK 62
Query: 504 DQQVVINCAIVRGVKYNQATPNFHQWRDARQVWGLNFGSKEDATQFASGMASALEAL 674
D+ VV+ C + + + Y +A P FH W+ + +GL F S DA F G+ A+E L
Sbjct: 63 DKLVVLECYVRKDLVYTKANPTFHHWKVDNRKFGLTFQSPADARAFDRGVRKAIEDL 119
>ref|NP_861449.2| sprouty-related, EVH1 domain-containing protein 2 isoform a [Homo
sapiens].
Length = 418
Score = 59.7 bits (143), Expect = 4e-09
Identities = 39/116 (33%), Positives = 58/116 (50%), Gaps = 5/116 (4%)
Frame = +3
Query: 342 ETVICSSRATVMLYDDSNKRWLPAGTGPQAFSRVQIYH--NPTANS---FRVVGRKMQPD 506
++ I +A VM DDS+ W P G SRV + +P N F + G + Q D
Sbjct: 10 DSYIVRVKAVVMTRDDSSGGWFPQEGG--GISRVGVCKVMHPEGNGRSGFLIHGER-QKD 66
Query: 507 QQVVINCAIVRGVKYNQATPNFHQWRDARQVWGLNFGSKEDATQFASGMASALEAL 674
+ VV+ C + + + Y +A P FH W+ + +GL F S DA F G+ A+E L
Sbjct: 67 KLVVLECYVRKDLVYTKANPTFHHWKVDNRKFGLTFQSPADARAFDRGVRKAIEDL 122
>ref|NP_001035987.1| sprouty-related, EVH1 domain-containing protein 3 isoform a [Homo
sapiens].
Length = 410
Score = 57.0 bits (136), Expect = 2e-08
Identities = 36/112 (32%), Positives = 54/112 (48%), Gaps = 8/112 (7%)
Frame = +3
Query: 363 RATVMLYDDSNKRWLPAGTGPQAFSRVQIYHNPTANS--------FRVVGRKMQPDQQVV 518
RA VM DDS+ WLP G G S+V + A + + G +++ DQ+
Sbjct: 5 RAVVMARDDSSGGWLPVGGG--GLSQVSVCRVRGARPEGGARQGHYVIHGERLR-DQKTT 61
Query: 519 INCAIVRGVKYNQATPNFHQWRDARQVWGLNFGSKEDATQFASGMASALEAL 674
+ C + G+ YN+ P FH W +GL F S +A +F + +AL AL
Sbjct: 62 LECTLKPGLVYNKVNPIFHHWSLGDCKFGLTFQSPAEADEFQKSLLAALAAL 113
>ref|NP_001034705.1| sprouty-related, EVH1 domain-containing protein 3 isoform b [Homo
sapiens].
Length = 152
Score = 57.0 bits (136), Expect = 2e-08
Identities = 36/112 (32%), Positives = 54/112 (48%), Gaps = 8/112 (7%)
Frame = +3
Query: 363 RATVMLYDDSNKRWLPAGTGPQAFSRVQIYHNPTANS--------FRVVGRKMQPDQQVV 518
RA VM DDS+ WLP G G S+V + A + + G +++ DQ+
Sbjct: 5 RAVVMARDDSSGGWLPVGGG--GLSQVSVCRVRGARPEGGARQGHYVIHGERLR-DQKTT 61
Query: 519 INCAIVRGVKYNQATPNFHQWRDARQVWGLNFGSKEDATQFASGMASALEAL 674
+ C + G+ YN+ P FH W +GL F S +A +F + +AL AL
Sbjct: 62 LECTLKPGLVYNKVNPIFHHWSLGDCKFGLTFQSPAEADEFQKSLLAALAAL 113
>ref|NP_004830.2| homer protein homolog 2 isoform 1 [Homo sapiens].
Length = 343
Score = 54.7 bits (130), Expect = 1e-07
Identities = 37/115 (32%), Positives = 60/115 (52%), Gaps = 3/115 (2%)
Frame = +3
Query: 336 MSETVICSSRATVMLYDDSNKR-WLPAGTGPQAFSRVQIYHNPTANSFRVVGRKMQPDQQ 512
M E I ++RA V D + K+ W+PA QA + V +++ T NS+R++ +
Sbjct: 1 MGEQPIFTTRAHVFQIDPNTKKNWMPASK--QAVT-VSYFYDVTRNSYRIIS---VDGAK 54
Query: 513 VVINCAIVRGVKYNQATPNFHQWRDAR--QVWGLNFGSKEDATQFASGMASALEA 671
V+IN I + + + + F QW D+R V+GL F S++ T+FA EA
Sbjct: 55 VIINSTITPNMTFTKTSQKFGQWADSRANTVFGLGFSSEQQLTKFAEKFQEVKEA 109
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 35,637,548
Number of extensions: 1171775
Number of successful extensions: 7965
Number of sequences better than 1.0e-05: 14
Number of HSP's gapped: 7772
Number of HSP's successfully gapped: 14
Length of query: 309
Length of database: 18,297,164
Length adjustment: 102
Effective length of query: 207
Effective length of database: 14,934,836
Effective search space: 3091511052
Effective search space used: 3091511052
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-004068
(928 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_033525.2| vasodilator-stimulated phosphoprotein [Mus musc... 268 6e-72
Alignment gi|NP_001076590.1| protein enabled homolog isoform 4 [Mus muscu... 172 4e-43
Alignment gi|NP_001076589.1| protein enabled homolog isoform 3 [Mus muscu... 172 4e-43
Alignment gi|NP_032706.2| protein enabled homolog isoform 2 [Mus musculus]. 171 6e-43
Alignment gi|NP_001156866.1| ena/VASP-like protein isoform 1 [Mus musculu... 170 1e-42
Alignment gi|NP_031991.3| ena/VASP-like protein isoform 2 [Mus musculus]. 170 1e-42
Alignment gi|NP_001156867.1| ena/VASP-like protein isoform 3 [Mus musculu... 168 5e-42
Alignment gi|NP_034265.2| protein enabled homolog isoform 1 [Mus musculus]. 166 2e-41
Alignment gi|NP_001156868.1| ena/VASP-like protein isoform 4 [Mus musculu... 155 4e-38
Alignment gi|NP_277059.1| sprouty-related, EVH1 domain-containing protein... 63 3e-10
>ref|NP_033525.2| vasodilator-stimulated phosphoprotein [Mus musculus].
Length = 375
Score = 268 bits (684), Expect = 6e-72
Identities = 134/159 (84%), Positives = 139/159 (87%)
Frame = +3
Query: 336 MSETVICSSRATVMLYDDSNKRWLPAGTGPQAFSRVQIYHNPTANSFRVVGRKMQPDQQV 515
MSETVICSSRATVMLYDDSNKRWLPAGTGPQAFSRVQIYHNPTANSFRVVGRKMQPDQQV
Sbjct: 1 MSETVICSSRATVMLYDDSNKRWLPAGTGPQAFSRVQIYHNPTANSFRVVGRKMQPDQQV 60
Query: 516 VINCAIVRGVKYNQATPNFHQWRDARQVWGLNFGSKEDATQFASGMASALEALEXXXXXX 695
VINCAI+RGVKYNQATP FHQWRDARQVWGLNFGSKEDA QFA+GMA+ALEALE
Sbjct: 61 VINCAIIRGVKYNQATPIFHQWRDARQVWGLNFGSKEDAIQFATGMANALEALE---GGG 117
Query: 696 XXXXXXXXTWSVQNGPAPEELEQQKRQQQPEHLERRVSN 812
WS QNGP+PEELEQQKR QPEH+ERRVSN
Sbjct: 118 PPPAPAPPAWSAQNGPSPEELEQQKR--QPEHMERRVSN 154
>ref|NP_001076590.1| protein enabled homolog isoform 4 [Mus musculus].
Length = 541
Score = 172 bits (435), Expect = 4e-43
Identities = 92/158 (58%), Positives = 109/158 (68%), Gaps = 1/158 (0%)
Frame = +3
Query: 336 MSETVICSSRATVMLYDDSNKRWLPAGTGPQAFSRVQIYHNPTANSFRVVGRKMQPDQQV 515
MSE IC +RA VM+YDD+NK+W+PAG G FSRV IYH+ N+FRVVGRK+Q D QV
Sbjct: 1 MSEQSICQARAAVMVYDDANKKWVPAG-GSTGFSRVHIYHHTGNNTFRVVGRKIQ-DHQV 58
Query: 516 VINCAIVRGVKYNQATPNFHQWRDARQVWGLNFGSKEDATQFASGMASALEAL-EXXXXX 692
VINCAI +G+KYNQAT FHQWRDARQV+GLNFGSKEDA FAS M ALE L
Sbjct: 59 VINCAIPKGLKYNQATQTFHQWRDARQVYGLNFGSKEDANVFASAMMHALEVLNSQEAGP 118
Query: 693 XXXXXXXXXTWSVQNGPAPEELEQQKRQQQPEHLERRV 806
VQNGP+ EELE Q+RQ Q + ++ +
Sbjct: 119 TLPRQNSQLPAQVQNGPSQEELEIQRRQLQEQQRQKEL 156
>ref|NP_001076589.1| protein enabled homolog isoform 3 [Mus musculus].
Length = 785
Score = 172 bits (435), Expect = 4e-43
Identities = 92/158 (58%), Positives = 109/158 (68%), Gaps = 1/158 (0%)
Frame = +3
Query: 336 MSETVICSSRATVMLYDDSNKRWLPAGTGPQAFSRVQIYHNPTANSFRVVGRKMQPDQQV 515
MSE IC +RA VM+YDD+NK+W+PAG G FSRV IYH+ N+FRVVGRK+Q D QV
Sbjct: 1 MSEQSICQARAAVMVYDDANKKWVPAG-GSTGFSRVHIYHHTGNNTFRVVGRKIQ-DHQV 58
Query: 516 VINCAIVRGVKYNQATPNFHQWRDARQVWGLNFGSKEDATQFASGMASALEAL-EXXXXX 692
VINCAI +G+KYNQAT FHQWRDARQV+GLNFGSKEDA FAS M ALE L
Sbjct: 59 VINCAIPKGLKYNQATQTFHQWRDARQVYGLNFGSKEDANVFASAMMHALEVLNSQEAGP 118
Query: 693 XXXXXXXXXTWSVQNGPAPEELEQQKRQQQPEHLERRV 806
VQNGP+ EELE Q+RQ Q + ++ +
Sbjct: 119 TLPRQNSQLPAQVQNGPSQEELEIQRRQLQEQQRQKEL 156
>ref|NP_032706.2| protein enabled homolog isoform 2 [Mus musculus].
Length = 789
Score = 171 bits (434), Expect = 6e-43
Identities = 93/162 (57%), Positives = 110/162 (67%), Gaps = 5/162 (3%)
Frame = +3
Query: 336 MSETVICSSRATVMLYDDSNKRWLPAGTGPQAFSRVQIYHNPTANSFRVVGRKMQPDQQV 515
MSE IC +RA VM+YDD+NK+W+PAG G FSRV IYH+ N+FRVVGRK+Q D QV
Sbjct: 1 MSEQSICQARAAVMVYDDANKKWVPAG-GSTGFSRVHIYHHTGNNTFRVVGRKIQ-DHQV 58
Query: 516 VINCAIVRGVKYNQATPNFHQWRDARQVWGLNFGSKEDATQFASGMASALEALEXXXXXX 695
VINCAI +G+KYNQAT FHQWRDARQV+GLNFGSKEDA FAS M ALE L
Sbjct: 59 VINCAIPKGLKYNQATQTFHQWRDARQVYGLNFGSKEDANVFASAMMHALEVLNSQEAVF 118
Query: 696 XXXXXXXXTWS-----VQNGPAPEELEQQKRQQQPEHLERRV 806
S VQNGP+ EELE Q+RQ Q + ++ +
Sbjct: 119 YLGPTLPRQNSQLPAQVQNGPSQEELEIQRRQLQEQQRQKEL 160
>ref|NP_001156866.1| ena/VASP-like protein isoform 1 [Mus musculus].
Length = 414
Score = 170 bits (431), Expect = 1e-42
Identities = 88/163 (53%), Positives = 114/163 (69%), Gaps = 5/163 (3%)
Frame = +3
Query: 336 MSETVICSSRATVMLYDDSNKRWLPAGTGPQAFSRVQIYHNPTANSFRVVGRKMQPDQQV 515
MSE IC +RA+VM+YDD++K+W+P G Q FSR+ IYHN +++FRVVG K+Q DQQV
Sbjct: 1 MSEQSICQARASVMVYDDTSKKWVPIKPGQQGFSRINIYHNTASSTFRVVGVKLQ-DQQV 59
Query: 516 VINCAIVRGVKYNQATPNFHQWRDARQVWGLNFGSKEDATQFASGMASALEALEXXXXXX 695
VIN +IV+G+KYNQATP FHQWRDARQV+GLNF SKE+AT F++ M AL +
Sbjct: 60 VINYSIVKGLKYNQATPTFHQWRDARQVYGLNFASKEEATTFSNAMLFALNIMNSQEGGP 119
Query: 696 XXXXXXXXTWSVQNGPAPEELEQQKR-----QQQPEHLERRVS 809
VQNGP+PEE++ Q+R Q + E LERR+S
Sbjct: 120 STQR------QVQNGPSPEEMDIQRRQVMEQQHRQESLERRIS 156
>ref|NP_031991.3| ena/VASP-like protein isoform 2 [Mus musculus].
Length = 393
Score = 170 bits (431), Expect = 1e-42
Identities = 88/163 (53%), Positives = 114/163 (69%), Gaps = 5/163 (3%)
Frame = +3
Query: 336 MSETVICSSRATVMLYDDSNKRWLPAGTGPQAFSRVQIYHNPTANSFRVVGRKMQPDQQV 515
MSE IC +RA+VM+YDD++K+W+P G Q FSR+ IYHN +++FRVVG K+Q DQQV
Sbjct: 1 MSEQSICQARASVMVYDDTSKKWVPIKPGQQGFSRINIYHNTASSTFRVVGVKLQ-DQQV 59
Query: 516 VINCAIVRGVKYNQATPNFHQWRDARQVWGLNFGSKEDATQFASGMASALEALEXXXXXX 695
VIN +IV+G+KYNQATP FHQWRDARQV+GLNF SKE+AT F++ M AL +
Sbjct: 60 VINYSIVKGLKYNQATPTFHQWRDARQVYGLNFASKEEATTFSNAMLFALNIMNSQEGGP 119
Query: 696 XXXXXXXXTWSVQNGPAPEELEQQKR-----QQQPEHLERRVS 809
VQNGP+PEE++ Q+R Q + E LERR+S
Sbjct: 120 STQR------QVQNGPSPEEMDIQRRQVMEQQHRQESLERRIS 156
>ref|NP_001156867.1| ena/VASP-like protein isoform 3 [Mus musculus].
Length = 399
Score = 168 bits (426), Expect = 5e-42
Identities = 87/162 (53%), Positives = 113/162 (69%), Gaps = 5/162 (3%)
Frame = +3
Query: 339 SETVICSSRATVMLYDDSNKRWLPAGTGPQAFSRVQIYHNPTANSFRVVGRKMQPDQQVV 518
SE IC +RA+VM+YDD++K+W+P G Q FSR+ IYHN +++FRVVG K+Q DQQVV
Sbjct: 8 SEQSICQARASVMVYDDTSKKWVPIKPGQQGFSRINIYHNTASSTFRVVGVKLQ-DQQVV 66
Query: 519 INCAIVRGVKYNQATPNFHQWRDARQVWGLNFGSKEDATQFASGMASALEALEXXXXXXX 698
IN +IV+G+KYNQATP FHQWRDARQV+GLNF SKE+AT F++ M AL +
Sbjct: 67 INYSIVKGLKYNQATPTFHQWRDARQVYGLNFASKEEATTFSNAMLFALNIMNSQEGGPS 126
Query: 699 XXXXXXXTWSVQNGPAPEELEQQKR-----QQQPEHLERRVS 809
VQNGP+PEE++ Q+R Q + E LERR+S
Sbjct: 127 TQR------QVQNGPSPEEMDIQRRQVMEQQHRQESLERRIS 162
>ref|NP_034265.2| protein enabled homolog isoform 1 [Mus musculus].
Length = 804
Score = 166 bits (420), Expect = 2e-41
Identities = 92/177 (51%), Positives = 111/177 (62%), Gaps = 20/177 (11%)
Frame = +3
Query: 336 MSETVICSSRATVMLYDDSNKRWLPAGTGPQAFSRVQIYHNPTANSFRVVGRKMQPDQQV 515
MSE IC +RA VM+YDD+NK+W+PAG G FSRV IYH+ N+FRVVGRK+Q D QV
Sbjct: 1 MSEQSICQARAAVMVYDDANKKWVPAG-GSTGFSRVHIYHHTGNNTFRVVGRKIQ-DHQV 58
Query: 516 VINCAIVRGVKYNQATPNFHQWRDARQVWGLNFGSKEDATQFASGMASALEALEXXXXXX 695
VINCAI +G+KYNQAT FHQWRDARQV+GLNFGSKEDA FAS M ALE L
Sbjct: 59 VINCAIPKGLKYNQATQTFHQWRDARQVYGLNFGSKEDANVFASAMMHALEVLNSQEAAQ 118
Query: 696 XXXXXXXXTWS--------------------VQNGPAPEELEQQKRQQQPEHLERRV 806
+ + VQNGP+ EELE Q+RQ Q + ++ +
Sbjct: 119 SKVTATQDSTNLRCIFCGPTLPRQNSQLPAQVQNGPSQEELEIQRRQLQEQQRQKEL 175
>ref|NP_001156868.1| ena/VASP-like protein isoform 4 [Mus musculus].
Length = 401
Score = 155 bits (392), Expect = 4e-38
Identities = 80/150 (53%), Positives = 104/150 (69%), Gaps = 5/150 (3%)
Frame = +3
Query: 375 MLYDDSNKRWLPAGTGPQAFSRVQIYHNPTANSFRVVGRKMQPDQQVVINCAIVRGVKYN 554
M+YDD++K+W+P G Q FSR+ IYHN +++FRVVG K+Q DQQVVIN +IV+G+KYN
Sbjct: 1 MVYDDTSKKWVPIKPGQQGFSRINIYHNTASSTFRVVGVKLQ-DQQVVINYSIVKGLKYN 59
Query: 555 QATPNFHQWRDARQVWGLNFGSKEDATQFASGMASALEALEXXXXXXXXXXXXXXTWSVQ 734
QATP FHQWRDARQV+GLNF SKE+AT F++ M AL + VQ
Sbjct: 60 QATPTFHQWRDARQVYGLNFASKEEATTFSNAMLFALNIMNSQEGGPSTQR------QVQ 113
Query: 735 NGPAPEELEQQKR-----QQQPEHLERRVS 809
NGP+PEE++ Q+R Q + E LERR+S
Sbjct: 114 NGPSPEEMDIQRRQVMEQQHRQESLERRIS 143
>ref|NP_277059.1| sprouty-related, EVH1 domain-containing protein 1 [Mus musculus].
Length = 444
Score = 63.2 bits (152), Expect = 3e-10
Identities = 37/107 (34%), Positives = 55/107 (51%), Gaps = 5/107 (4%)
Frame = +3
Query: 363 RATVMLYDDSNKRWLPAGTGPQAFSRVQIYHNPTANS-----FRVVGRKMQPDQQVVINC 527
RA VM DDS+ WLP G S V ++ P F + G +++ D+ VV+ C
Sbjct: 18 RAVVMTRDDSSGGWLPLGGS--GLSSVTVFRVPHQEENGCADFFIRGERLR-DKMVVLEC 74
Query: 528 AIVRGVKYNQATPNFHQWRDARQVWGLNFGSKEDATQFASGMASALE 668
+ + + YN+ TP FH W+ + +GL F S DA F G+ A+E
Sbjct: 75 MLKKDLIYNKVTPTFHHWKIDDKKFGLTFQSPADARAFDRGIRRAIE 121
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 29,619,215
Number of extensions: 938626
Number of successful extensions: 5656
Number of sequences better than 1.0e-05: 16
Number of HSP's gapped: 5515
Number of HSP's successfully gapped: 17
Length of query: 309
Length of database: 15,617,559
Length adjustment: 101
Effective length of query: 208
Effective length of database: 12,583,923
Effective search space: 2617455984
Effective search space used: 2617455984
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-004068
(928 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_003130593.2| PREDICTED: hypothetical protein LOC100525245... 168 3e-42
Alignment gi|XP_003128774.2| PREDICTED: hypothetical protein LOC100514853... 131 5e-31
Alignment gi|XP_003121670.2| PREDICTED: sprouty-related, EVH1 domain-cont... 63 2e-10
Alignment gi|XP_003125134.2| PREDICTED: sprouty-related, EVH1 domain-cont... 61 8e-10
Alignment gi|XP_003355930.1| PREDICTED: sprouty-related, EVH1 domain-cont... 57 2e-08
Alignment gi|XP_003127160.1| PREDICTED: sprouty-related, EVH1 domain-cont... 57 2e-08
Alignment gi|XP_001927331.2| PREDICTED: homer protein homolog 2 [Sus scro... 55 4e-08
Alignment gi|XP_003361687.1| PREDICTED: homer protein homolog 1-like, par... 48 9e-06
Alignment gi|NP_001230740.1| homer homolog 1 [Sus scrofa]. 48 9e-06
>ref|XP_003130593.2| PREDICTED: hypothetical protein LOC100525245, partial [Sus scrofa].
Length = 544
Score = 168 bits (426), Expect = 3e-42
Identities = 90/156 (57%), Positives = 107/156 (68%), Gaps = 1/156 (0%)
Frame = +3
Query: 342 ETVICSSRATVMLYDDSNKRWLPAGTGPQAFSRVQIYHNPTANSFRVVGRKMQPDQQVVI 521
E IC +RA VM+YDD+NK+W+PAG G FSRV IYH+ N+FRVVGRK+Q D QVVI
Sbjct: 7 EQSICQARAAVMVYDDANKKWVPAG-GSTGFSRVHIYHHTGNNTFRVVGRKIQ-DHQVVI 64
Query: 522 NCAIVRGVKYNQATPNFHQWRDARQVWGLNFGSKEDATQFASGMASALEAL-EXXXXXXX 698
NCAI +G+KYNQAT FHQWRDARQV+GLNFGSKEDA FAS M ALE L
Sbjct: 65 NCAIPKGLKYNQATQTFHQWRDARQVYGLNFGSKEDANVFASAMMHALEVLNSQEAGPTL 124
Query: 699 XXXXXXXTWSVQNGPAPEELEQQKRQQQPEHLERRV 806
VQNGP+ EELE Q+RQ Q + ++ +
Sbjct: 125 PRQNSQLPAQVQNGPSQEELEIQRRQLQEQQRQKEL 160
>ref|XP_003128774.2| PREDICTED: hypothetical protein LOC100514853, partial [Sus scrofa].
Length = 216
Score = 131 bits (330), Expect = 5e-31
Identities = 64/110 (58%), Positives = 83/110 (75%)
Frame = +3
Query: 276 SQGRPGSTYPVGAPPASRAAMSETVICSSRATVMLYDDSNKRWLPAGTGPQAFSRVQIYH 455
S+ PG P +P +A +E IC +RA+VM+YDD++K+W+P G Q FSR+ IYH
Sbjct: 73 SREEPGPGKP--SPRGLQALTAEQSICQARASVMVYDDTSKKWVPIKPGQQGFSRINIYH 130
Query: 456 NPTANSFRVVGRKMQPDQQVVINCAIVRGVKYNQATPNFHQWRDARQVWG 605
N +N+FRVVG K+Q DQQVVIN +IV+G+KYNQATP FHQWRDARQV+G
Sbjct: 131 NTASNTFRVVGVKLQ-DQQVVINYSIVKGLKYNQATPTFHQWRDARQVYG 179
>ref|XP_003121670.2| PREDICTED: sprouty-related, EVH1 domain-containing protein 1,
partial [Sus scrofa].
Length = 432
Score = 63.2 bits (152), Expect = 2e-10
Identities = 36/105 (34%), Positives = 56/105 (53%), Gaps = 3/105 (2%)
Frame = +3
Query: 363 RATVMLYDDSNKRWLP-AGTGPQAFSRVQIYHNPTAN--SFRVVGRKMQPDQQVVINCAI 533
RA VM DDS+ WLP G+G + ++ H F + G +++ D+ VV+ C +
Sbjct: 7 RAVVMTRDDSSGGWLPLGGSGLSCVTVFKVPHQEENGCADFYIRGERLR-DKMVVLECML 65
Query: 534 VRGVKYNQATPNFHQWRDARQVWGLNFGSKEDATQFASGMASALE 668
+ + YN+ TP FH W+ + +GL F S DA F G+ A+E
Sbjct: 66 KKDLIYNKVTPTFHHWKIDDKKFGLTFQSPADARAFDRGIRRAIE 110
>ref|XP_003125134.2| PREDICTED: sprouty-related, EVH1 domain-containing protein 2 [Sus
scrofa].
Length = 414
Score = 61.2 bits (147), Expect = 8e-10
Identities = 40/117 (34%), Positives = 59/117 (50%), Gaps = 5/117 (4%)
Frame = +3
Query: 339 SETVICSSRATVMLYDDSNKRWLPAGTGPQAFSRVQIYH--NPTANS---FRVVGRKMQP 503
S++ I +A VM DDS+ W P G SRV + +P N F + G + Q
Sbjct: 6 SDSYIVRVKAVVMTRDDSSGGWFPQEGG--GISRVGVCKVMHPEGNGRSGFLIHGER-QK 62
Query: 504 DQQVVINCAIVRGVKYNQATPNFHQWRDARQVWGLNFGSKEDATQFASGMASALEAL 674
D+ VV+ C + + + Y +A P FH W+ + +GL F S DA F G+ A+E L
Sbjct: 63 DKLVVLECYVRKDLVYTKANPTFHHWKVDNRKFGLTFQSPADARAFDRGVRKAIEDL 119
>ref|XP_003355930.1| PREDICTED: sprouty-related, EVH1 domain-containing protein 3-like
isoform 2 [Sus scrofa].
Length = 160
Score = 56.6 bits (135), Expect = 2e-08
Identities = 36/112 (32%), Positives = 54/112 (48%), Gaps = 8/112 (7%)
Frame = +3
Query: 363 RATVMLYDDSNKRWLPAGTGPQAFSRVQIYHNPTANS--------FRVVGRKMQPDQQVV 518
RA VM DDS+ WLP G G S+V + A + + G +++ DQ+
Sbjct: 5 RAVVMARDDSSGGWLPVGGG--GLSQVSVCRVRGARPEGGARQGHYVIHGERLR-DQKTT 61
Query: 519 INCAIVRGVKYNQATPNFHQWRDARQVWGLNFGSKEDATQFASGMASALEAL 674
+ C + G+ YN+ P FH W +GL F S +A +F + +AL AL
Sbjct: 62 LECTLRPGLVYNKVNPIFHHWSLGDCKFGLTFQSPAEADEFQKSLLAALAAL 113
>ref|XP_003127160.1| PREDICTED: sprouty-related, EVH1 domain-containing protein 3-like
isoform 1 [Sus scrofa].
Length = 409
Score = 56.6 bits (135), Expect = 2e-08
Identities = 36/112 (32%), Positives = 54/112 (48%), Gaps = 8/112 (7%)
Frame = +3
Query: 363 RATVMLYDDSNKRWLPAGTGPQAFSRVQIYHNPTANS--------FRVVGRKMQPDQQVV 518
RA VM DDS+ WLP G G S+V + A + + G +++ DQ+
Sbjct: 5 RAVVMARDDSSGGWLPVGGG--GLSQVSVCRVRGARPEGGARQGHYVIHGERLR-DQKTT 61
Query: 519 INCAIVRGVKYNQATPNFHQWRDARQVWGLNFGSKEDATQFASGMASALEAL 674
+ C + G+ YN+ P FH W +GL F S +A +F + +AL AL
Sbjct: 62 LECTLRPGLVYNKVNPIFHHWSLGDCKFGLTFQSPAEADEFQKSLLAALAAL 113
>ref|XP_001927331.2| PREDICTED: homer protein homolog 2 [Sus scrofa].
Length = 343
Score = 55.5 bits (132), Expect = 4e-08
Identities = 38/115 (33%), Positives = 60/115 (52%), Gaps = 3/115 (2%)
Frame = +3
Query: 336 MSETVICSSRATVMLYDDSNKR-WLPAGTGPQAFSRVQIYHNPTANSFRVVGRKMQPDQQ 512
M E I ++RA V D S K+ W+PA QA + V +++ T NS+R++ +
Sbjct: 1 MGEQPIFTTRAHVFQIDPSTKKNWVPASK--QAVT-VSYFYDVTRNSYRIIS---VDGAK 54
Query: 513 VVINCAIVRGVKYNQATPNFHQWRDAR--QVWGLNFGSKEDATQFASGMASALEA 671
V+IN I + + + + F QW D+R V+GL F S++ T+FA EA
Sbjct: 55 VIINSTITPNMTFTKTSQKFGQWADSRANTVFGLGFSSEQQLTKFAEKFLEVKEA 109
>ref|XP_003361687.1| PREDICTED: homer protein homolog 1-like, partial [Sus scrofa].
Length = 175
Score = 47.8 bits (112), Expect = 9e-06
Identities = 34/115 (29%), Positives = 56/115 (48%), Gaps = 3/115 (2%)
Frame = +3
Query: 336 MSETVICSSRATVMLYDDSNKR-WLPAGTGPQAFSRVQIYHNPTANSFRVVGRKMQPDQQ 512
M E I S+RA V D + K+ W+P T A + V +++ T N +R++ +
Sbjct: 1 MGEQPIFSTRAHVFQIDPNTKKNWVP--TSKHAVT-VSYFYDSTRNVYRIISLD---GSK 54
Query: 513 VVINCAIVRGVKYNQATPNFHQWRDAR--QVWGLNFGSKEDATQFASGMASALEA 671
+IN I + + + + F QW D+R V+GL F S+ ++FA EA
Sbjct: 55 AIINSTITPNMTFTKTSQKFGQWADSRANTVYGLGFSSEHHLSKFAEKFQEFKEA 109
>ref|NP_001230740.1| homer homolog 1 [Sus scrofa].
Length = 354
Score = 47.8 bits (112), Expect = 9e-06
Identities = 34/115 (29%), Positives = 56/115 (48%), Gaps = 3/115 (2%)
Frame = +3
Query: 336 MSETVICSSRATVMLYDDSNKR-WLPAGTGPQAFSRVQIYHNPTANSFRVVGRKMQPDQQ 512
M E I S+RA V D + K+ W+P T A + V +++ T N +R++ +
Sbjct: 1 MGEQPIFSTRAHVFQIDPNTKKNWVP--TNKHAVT-VSYFYDSTRNVYRIISLD---GSK 54
Query: 513 VVINCAIVRGVKYNQATPNFHQWRDAR--QVWGLNFGSKEDATQFASGMASALEA 671
+IN I + + + + F QW D+R V+GL F S+ ++FA EA
Sbjct: 55 AIINSTITPNMTFTKTSQKFGQWADSRANTVYGLGFSSEHHLSKFAEKFQEFKEA 109
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 22,761,460
Number of extensions: 775980
Number of successful extensions: 5765
Number of sequences better than 1.0e-05: 9
Number of HSP's gapped: 5421
Number of HSP's successfully gapped: 9
Length of query: 309
Length of database: 11,343,932
Length adjustment: 99
Effective length of query: 210
Effective length of database: 8,879,129
Effective search space: 1864617090
Effective search space used: 1864617090
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 33 (17.3 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-004068
(928 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|GL894354.1| Sus scrofa unplaced genomic scaffold chrU_scaffol... 62 6e-07
>gb|GL894354.1| Sus scrofa unplaced genomic scaffold chrU_scaffold3027
Length = 22586
Score = 61.9 bits (31), Expect = 6e-07
Identities = 49/55 (89%)
Strand = Plus / Minus
Query: 546 aagtacaaccaggccacccccaacttccaccagtggcgcgacgcccgccaggtct 600
|||||||| ||||| || || | ||||||||||||||| ||||||||||||||||
Sbjct: 8534 aagtacaatcaggcgacgccaaccttccaccagtggcgagacgcccgccaggtct 8480
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 19,649,025
Number of extensions: 163
Number of successful extensions: 163
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 163
Number of HSP's successfully gapped: 1
Length of query: 928
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 907
Effective length of database: 2,808,413,156
Effective search space: 2547230732492
Effective search space used: 2547230732492
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 29 (58.0 bits)