Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-004072
(987 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001179115.1| zinc finger protein 593 [Bos taurus]. 272 4e-73
Alignment gi|XP_002685749.1| PREDICTED: zinc finger protein 593-like [Bos... 272 4e-73
>ref|NP_001179115.1| zinc finger protein 593 [Bos taurus].
Length = 134
Score = 272 bits (695), Expect = 4e-73
Identities = 131/134 (97%), Positives = 133/134 (99%)
Frame = +3
Query: 75 MGRSRRTGAHRAHSLARQMKAKRRRPDLDEIHRELRPQVATRTRPDPGAEPDPDLPGGGL 254
MGRSRRTGAHRAHSLARQMKAKRRRPDLDEIHRELRPQVATR RPDPGAEPDPDLPGGGL
Sbjct: 1 MGRSRRTGAHRAHSLARQMKAKRRRPDLDEIHRELRPQVATRPRPDPGAEPDPDLPGGGL 60
Query: 255 HRCLACARYFIDSANLKTHFRSKDHKKRLKQLSVEPYSQEEAERAAGMGSYVPPQRLAVP 434
HRCLACARYFIDSANLKTHFRSKDHKKRLKQLSVEPYSQEEAERAAGMGSY+PPQRLAVP
Sbjct: 61 HRCLACARYFIDSANLKTHFRSKDHKKRLKQLSVEPYSQEEAERAAGMGSYIPPQRLAVP 120
Query: 435 TEVSTDVPEMDTST 476
TEVST+VPEMDTST
Sbjct: 121 TEVSTEVPEMDTST 134
>ref|XP_002685749.1| PREDICTED: zinc finger protein 593-like [Bos taurus].
Length = 134
Score = 272 bits (695), Expect = 4e-73
Identities = 131/134 (97%), Positives = 133/134 (99%)
Frame = +3
Query: 75 MGRSRRTGAHRAHSLARQMKAKRRRPDLDEIHRELRPQVATRTRPDPGAEPDPDLPGGGL 254
MGRSRRTGAHRAHSLARQMKAKRRRPDLDEIHRELRPQVATR RPDPGAEPDPDLPGGGL
Sbjct: 1 MGRSRRTGAHRAHSLARQMKAKRRRPDLDEIHRELRPQVATRPRPDPGAEPDPDLPGGGL 60
Query: 255 HRCLACARYFIDSANLKTHFRSKDHKKRLKQLSVEPYSQEEAERAAGMGSYVPPQRLAVP 434
HRCLACARYFIDSANLKTHFRSKDHKKRLKQLSVEPYSQEEAERAAGMGSY+PPQRLAVP
Sbjct: 61 HRCLACARYFIDSANLKTHFRSKDHKKRLKQLSVEPYSQEEAERAAGMGSYIPPQRLAVP 120
Query: 435 TEVSTDVPEMDTST 476
TEVST+VPEMDTST
Sbjct: 121 TEVSTEVPEMDTST 134
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 45,990,555
Number of extensions: 1519836
Number of successful extensions: 8282
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 8193
Number of HSP's successfully gapped: 2
Length of query: 329
Length of database: 17,681,374
Length adjustment: 103
Effective length of query: 226
Effective length of database: 14,273,310
Effective search space: 3225768060
Effective search space used: 3225768060
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-004072
(987 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_544486.2| PREDICTED: similar to Zinc finger protein 593 (... 259 4e-69
>ref|XP_544486.2| PREDICTED: similar to Zinc finger protein 593 (Zinc finger protein
T86) [Canis familiaris].
Length = 182
Score = 259 bits (661), Expect = 4e-69
Identities = 128/149 (85%), Positives = 133/149 (89%)
Frame = +3
Query: 27 CPPNSALGPLVPLLPAMGRSRRTGAHRAHSLARQMKAKRRRPDLDEIHRELRPQVATRTR 206
C P AL P PL AMGR+RRTGAHRA SLARQMKAKRRRPDLDEIHRELRPQV R+R
Sbjct: 30 CAPLPALSPPGPLSLAMGRARRTGAHRARSLARQMKAKRRRPDLDEIHRELRPQVPARSR 89
Query: 207 PDPGAEPDPDLPGGGLHRCLACARYFIDSANLKTHFRSKDHKKRLKQLSVEPYSQEEAER 386
PDP +EPDPDLPGGGLHRCLACARYFIDSA LKTHFRSKDHKKRLKQLSVEPYSQEEAER
Sbjct: 90 PDPASEPDPDLPGGGLHRCLACARYFIDSATLKTHFRSKDHKKRLKQLSVEPYSQEEAER 149
Query: 387 AAGMGSYVPPQRLAVPTEVSTDVPEMDTS 473
AAGMGSYV PQRLAVP EVST+VPEM T+
Sbjct: 150 AAGMGSYVTPQRLAVPMEVSTEVPEMVTT 178
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 47,972,711
Number of extensions: 1571244
Number of successful extensions: 8052
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 7963
Number of HSP's successfully gapped: 1
Length of query: 329
Length of database: 18,874,504
Length adjustment: 103
Effective length of query: 226
Effective length of database: 15,440,896
Effective search space: 3489642496
Effective search space used: 3489642496
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-004072
(987 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_056955.2| zinc finger protein 593 [Homo sapiens]. 255 4e-68
>ref|NP_056955.2| zinc finger protein 593 [Homo sapiens].
Length = 134
Score = 255 bits (652), Expect = 4e-68
Identities = 124/134 (92%), Positives = 128/134 (95%)
Frame = +3
Query: 75 MGRSRRTGAHRAHSLARQMKAKRRRPDLDEIHRELRPQVATRTRPDPGAEPDPDLPGGGL 254
MGRSRRTGAHRAHSLARQMKAKRRRPDLDEIHRELRPQ + R +PDP AE DPDLPGGGL
Sbjct: 1 MGRSRRTGAHRAHSLARQMKAKRRRPDLDEIHRELRPQGSARPQPDPNAEFDPDLPGGGL 60
Query: 255 HRCLACARYFIDSANLKTHFRSKDHKKRLKQLSVEPYSQEEAERAAGMGSYVPPQRLAVP 434
HRCLACARYFIDS NLKTHFRSKDHKKRLKQLSVEPYSQEEAERAAGMGSYVPP+RLAVP
Sbjct: 61 HRCLACARYFIDSTNLKTHFRSKDHKKRLKQLSVEPYSQEEAERAAGMGSYVPPRRLAVP 120
Query: 435 TEVSTDVPEMDTST 476
TEVST+VPEMDTST
Sbjct: 121 TEVSTEVPEMDTST 134
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 46,935,500
Number of extensions: 1525195
Number of successful extensions: 8243
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 8160
Number of HSP's successfully gapped: 1
Length of query: 329
Length of database: 18,297,164
Length adjustment: 103
Effective length of query: 226
Effective length of database: 14,901,872
Effective search space: 3367823072
Effective search space used: 3367823072
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-004072
(987 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_077177.2| zinc finger protein 593 [Mus musculus]. 255 3e-68
>ref|NP_077177.2| zinc finger protein 593 [Mus musculus].
Length = 134
Score = 255 bits (652), Expect = 3e-68
Identities = 123/134 (91%), Positives = 127/134 (94%)
Frame = +3
Query: 75 MGRSRRTGAHRAHSLARQMKAKRRRPDLDEIHRELRPQVATRTRPDPGAEPDPDLPGGGL 254
MGRSRRTGAHRAHSLARQMKAK+RRPDLDEIHRELRPQ R +P+P AEPDPDLPGGGL
Sbjct: 1 MGRSRRTGAHRAHSLARQMKAKKRRPDLDEIHRELRPQGLPRPKPEPDAEPDPDLPGGGL 60
Query: 255 HRCLACARYFIDSANLKTHFRSKDHKKRLKQLSVEPYSQEEAERAAGMGSYVPPQRLAVP 434
HRCLACARYFIDSANLKTHFRSKDHKKRLKQLSVEPYSQEEAERAAGMGSYV PQRL VP
Sbjct: 61 HRCLACARYFIDSANLKTHFRSKDHKKRLKQLSVEPYSQEEAERAAGMGSYVQPQRLGVP 120
Query: 435 TEVSTDVPEMDTST 476
TEVSTD+PEMDTST
Sbjct: 121 TEVSTDIPEMDTST 134
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 39,452,076
Number of extensions: 1258796
Number of successful extensions: 6715
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 6638
Number of HSP's successfully gapped: 1
Length of query: 329
Length of database: 15,617,559
Length adjustment: 102
Effective length of query: 227
Effective length of database: 12,553,887
Effective search space: 2849732349
Effective search space used: 2849732349
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-004072
(987 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
***** No hits found ******
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 29,772,937
Number of extensions: 984354
Number of successful extensions: 5290
Number of sequences better than 1.0e-05: 0
Number of HSP's gapped: 5244
Number of HSP's successfully gapped: 0
Length of query: 329
Length of database: 11,343,932
Length adjustment: 99
Effective length of query: 230
Effective length of database: 8,879,129
Effective search space: 2042199670
Effective search space used: 2042199670
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-004072
(987 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_ChrX 585 e-164
>Sscrofa_ChrX
|| Length = 144288218
Score = 585 bits (295), Expect = e-164
Identities = 331/342 (96%), Gaps = 2/342 (0%)
Strand = Plus / Minus
Query: 336 aggttgaagcagctgagtgtggagccctacagtcaggaagaggcagagagggcagcgggt 395
||||||||||||||||| ||||||||||||||||||||||||||||||| ||||| ||||
Sbjct: 53143798 aggttgaagcagctgagcgtggagccctacagtcaggaagaggcagagaaggcagtgggt 53143739
Query: 396 atgggttcctatgtacctccccagcggctggcagtgcccacagaagtatccactgatgtc 455
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 53143738 atgggttcctatgtgcctccccagcggctggcagtgcccacagaagtatccactgaggtc 53143679
Query: 456 cctgagatggacacatctacttgacagatcctgagaattcaaggcagaagagttgcccat 515
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 53143678 cctgagatggacacatctgcttgacagatcctgagaattcaaggcagaagagttgcccat 53143619
Query: 516 ggacagtgatgcaagggccagtctgggagagactgtaccagtctgttttggcccggggtt 575
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 53143618 ggacagtgacgcaagggccagtctgggagagactgtaccagtctgttttggcccgggctt 53143559
Query: 576 tggggagtggatggcctcttcccagtgccctccctcccaataaaataactggataaaggg 635
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 53143558 tggggagtggatggcctcttcccagtgccctccctcccaataaaataactggataaaggg 53143499
Query: 636 ggcttgcccctgactc--taacccccaggccactactccaaa 675
|||||||||||||||| || |||||||||||||||||||||
Sbjct: 53143498 ggcttgcccctgactctttagcccccaggccactactccaaa 53143457
Score = 343 bits (173), Expect = 1e-91
Identities = 231/250 (92%), Gaps = 4/250 (1%)
Strand = Plus / Minus
Query: 25 cgtgtcctcccaactcggctctaggcccgttggtcccgctgttaccagcaatgggtcgct 84
||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||
Sbjct: 53144430 cgtgtcctcccaactcggccctaggcctgttggtcccgctgttaccagcaatgggtc--- 53144374
Query: 85 ctcgccgaaccggcgcacaccgagcgcactccctggcccgccagatgaaggcgaagcggc 144
| |||| ||| |||||||||||| | ||||||||||| |||||||||||||||||||||
Sbjct: 53144373 -ttgccggaccagcgcacaccgagtgtactccctggcctgccagatgaaggcgaagcggc 53144315
Query: 145 ggcggccggacctcgatgagattcaccgcgagctgcggccccaggttgccacaaggaccc 204
|||||||||||||| |||||||||||| |||||| ||||||||||||||||||||||||
Sbjct: 53144314 ggcggccggacctcaatgagattcaccatgagctgtggccccaggttgccacaaggaccc 53144255
Query: 205 gaccagaccccggcgccgagcccgaccccgacctgccagggggcggcctgcatcgctgtc 264
||||||||||||||| | ||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 53144254 gaccagaccccggcggctagcccgacctcgacctgccagggggcggcctgcatcgctgtc 53144195
Query: 265 tggcctgcgc 274
||||||||||
Sbjct: 53144194 tggcctgcgc 53144185
Score = 129 bits (65), Expect = 3e-27
Identities = 65/65 (100%)
Strand = Plus / Minus
Query: 275 gagatacttcatcgattctgccaacctgaagacccacttccgatccaaagaccacaagaa 334
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 53143950 gagatacttcatcgattctgccaacctgaagacccacttccgatccaaagaccacaagaa 53143891
Query: 335 aaggt 339
|||||
Sbjct: 53143890 aaggt 53143886
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 25,156,498
Number of extensions: 131
Number of successful extensions: 131
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 129
Number of HSP's successfully gapped: 3
Length of query: 987
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 966
Effective length of database: 2,808,413,156
Effective search space: 2712927108696
Effective search space used: 2712927108696
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 29 (58.0 bits)