Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-004082
(514 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001107991.1| U6 snRNA-associated Sm-like protein LSm6 [Bo... 162 1e-40
Alignment gi|XP_002685328.1| PREDICTED: Sm protein F-like [Bos taurus]. 152 2e-37
Alignment gi|XP_001252392.1| PREDICTED: Sm protein F [Bos taurus]. 152 2e-37
Alignment gi|NP_001181956.1| small nuclear ribonucleoprotein F [Bos tauru... 75 3e-14
>ref|NP_001107991.1| U6 snRNA-associated Sm-like protein LSm6 [Bos taurus].
Length = 80
Score = 162 bits (410), Expect = 1e-40
Identities = 80/80 (100%), Positives = 80/80 (100%)
Frame = +3
Query: 90 MSLRKQTPSDFLKQIIGRPVVVKLNSGVDYRGVLACLDGYMNIALEQTEEYVNGQLKNKY 269
MSLRKQTPSDFLKQIIGRPVVVKLNSGVDYRGVLACLDGYMNIALEQTEEYVNGQLKNKY
Sbjct: 1 MSLRKQTPSDFLKQIIGRPVVVKLNSGVDYRGVLACLDGYMNIALEQTEEYVNGQLKNKY 60
Query: 270 GDAFIRGNNVLYISTQKRRM 329
GDAFIRGNNVLYISTQKRRM
Sbjct: 61 GDAFIRGNNVLYISTQKRRM 80
>ref|XP_002685328.1| PREDICTED: Sm protein F-like [Bos taurus].
Length = 80
Score = 152 bits (383), Expect = 2e-37
Identities = 75/80 (93%), Positives = 76/80 (95%)
Frame = +3
Query: 90 MSLRKQTPSDFLKQIIGRPVVVKLNSGVDYRGVLACLDGYMNIALEQTEEYVNGQLKNKY 269
MSL KQTPSDFLKQI GRPVVVKLNSGVDYRGVLACLDGYMNI LEQTEEYVNGQLKN Y
Sbjct: 1 MSLWKQTPSDFLKQITGRPVVVKLNSGVDYRGVLACLDGYMNIVLEQTEEYVNGQLKNTY 60
Query: 270 GDAFIRGNNVLYISTQKRRM 329
GDAFI+GNNVLYISTQKRRM
Sbjct: 61 GDAFIQGNNVLYISTQKRRM 80
>ref|XP_001252392.1| PREDICTED: Sm protein F [Bos taurus].
Length = 80
Score = 152 bits (383), Expect = 2e-37
Identities = 75/80 (93%), Positives = 76/80 (95%)
Frame = +3
Query: 90 MSLRKQTPSDFLKQIIGRPVVVKLNSGVDYRGVLACLDGYMNIALEQTEEYVNGQLKNKY 269
MSL KQTPSDFLKQI GRPVVVKLNSGVDYRGVLACLDGYMNI LEQTEEYVNGQLKN Y
Sbjct: 1 MSLWKQTPSDFLKQITGRPVVVKLNSGVDYRGVLACLDGYMNIVLEQTEEYVNGQLKNTY 60
Query: 270 GDAFIRGNNVLYISTQKRRM 329
GDAFI+GNNVLYISTQKRRM
Sbjct: 61 GDAFIQGNNVLYISTQKRRM 80
>ref|NP_001181956.1| small nuclear ribonucleoprotein F [Bos taurus].
Length = 86
Score = 75.1 bits (183), Expect = 3e-14
Identities = 34/66 (51%), Positives = 45/66 (68%)
Frame = +3
Query: 111 PSDFLKQIIGRPVVVKLNSGVDYRGVLACLDGYMNIALEQTEEYVNGQLKNKYGDAFIRG 290
P FL + G+PV+VKL G++Y+G L +DGYMN+ L TEEY++G L G+ IR
Sbjct: 7 PKPFLNGLTGKPVMVKLKWGMEYKGYLVSVDGYMNMQLANTEEYIDGALSGHLGEVLIRC 66
Query: 291 NNVLYI 308
NNVLYI
Sbjct: 67 NNVLYI 72
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 19,237,405
Number of extensions: 519106
Number of successful extensions: 2088
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 2087
Number of HSP's successfully gapped: 4
Length of query: 171
Length of database: 17,681,374
Length adjustment: 95
Effective length of query: 76
Effective length of database: 14,538,014
Effective search space: 1104889064
Effective search space used: 1104889064
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 32 (16.9 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-004082
(514 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_855162.1| PREDICTED: similar to U6 snRNA-associated Sm-li... 180 5e-46
Alignment gi|XP_539726.2| PREDICTED: similar to Small nuclear ribonucleop... 77 1e-14
>ref|XP_855162.1| PREDICTED: similar to U6 snRNA-associated Sm-like protein LSm6
[Canis familiaris].
Length = 356
Score = 180 bits (457), Expect = 5e-46
Identities = 90/91 (98%), Positives = 90/91 (98%)
Frame = +3
Query: 57 PAARFLTRIVKMSLRKQTPSDFLKQIIGRPVVVKLNSGVDYRGVLACLDGYMNIALEQTE 236
PAARFL RIVKMSLRKQTPSDFLKQIIGRPVVVKLNSGVDYRGVLACLDGYMNIALEQTE
Sbjct: 266 PAARFLIRIVKMSLRKQTPSDFLKQIIGRPVVVKLNSGVDYRGVLACLDGYMNIALEQTE 325
Query: 237 EYVNGQLKNKYGDAFIRGNNVLYISTQKRRM 329
EYVNGQLKNKYGDAFIRGNNVLYISTQKRRM
Sbjct: 326 EYVNGQLKNKYGDAFIRGNNVLYISTQKRRM 356
>ref|XP_539726.2| PREDICTED: similar to Small nuclear ribonucleoprotein F (snRNP-F)
(Sm protein F) (Sm-F) (SmF) [Canis familiaris].
Length = 280
Score = 76.6 bits (187), Expect = 1e-14
Identities = 38/76 (50%), Positives = 50/76 (65%)
Frame = +3
Query: 81 IVKMSLRKQTPSDFLKQIIGRPVVVKLNSGVDYRGVLACLDGYMNIALEQTEEYVNGQLK 260
+V MSL P FL + G+PV+VKL G++Y+G L +DGYMN+ L TEEY++G L
Sbjct: 192 VVAMSL-PLNPKPFLNGLTGKPVMVKLKWGMEYKGYLVSVDGYMNMQLANTEEYIDGALS 250
Query: 261 NKYGDAFIRGNNVLYI 308
G+ IR NNVLYI
Sbjct: 251 GHLGEVLIRCNNVLYI 266
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 20,053,073
Number of extensions: 531758
Number of successful extensions: 2028
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 2028
Number of HSP's successfully gapped: 2
Length of query: 171
Length of database: 18,874,504
Length adjustment: 95
Effective length of query: 76
Effective length of database: 15,707,584
Effective search space: 1193776384
Effective search space used: 1193776384
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 32 (16.9 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-004082
(514 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_009011.1| U6 snRNA-associated Sm-like protein LSm6 [Homo ... 162 1e-40
Alignment gi|NP_003086.1| small nuclear ribonucleoprotein F [Homo sapiens]. 75 3e-14
>ref|NP_009011.1| U6 snRNA-associated Sm-like protein LSm6 [Homo sapiens].
Length = 80
Score = 162 bits (410), Expect = 1e-40
Identities = 80/80 (100%), Positives = 80/80 (100%)
Frame = +3
Query: 90 MSLRKQTPSDFLKQIIGRPVVVKLNSGVDYRGVLACLDGYMNIALEQTEEYVNGQLKNKY 269
MSLRKQTPSDFLKQIIGRPVVVKLNSGVDYRGVLACLDGYMNIALEQTEEYVNGQLKNKY
Sbjct: 1 MSLRKQTPSDFLKQIIGRPVVVKLNSGVDYRGVLACLDGYMNIALEQTEEYVNGQLKNKY 60
Query: 270 GDAFIRGNNVLYISTQKRRM 329
GDAFIRGNNVLYISTQKRRM
Sbjct: 61 GDAFIRGNNVLYISTQKRRM 80
>ref|NP_003086.1| small nuclear ribonucleoprotein F [Homo sapiens].
Length = 86
Score = 75.1 bits (183), Expect = 3e-14
Identities = 34/66 (51%), Positives = 45/66 (68%)
Frame = +3
Query: 111 PSDFLKQIIGRPVVVKLNSGVDYRGVLACLDGYMNIALEQTEEYVNGQLKNKYGDAFIRG 290
P FL + G+PV+VKL G++Y+G L +DGYMN+ L TEEY++G L G+ IR
Sbjct: 7 PKPFLNGLTGKPVMVKLKWGMEYKGYLVSVDGYMNMQLANTEEYIDGALSGHLGEVLIRC 66
Query: 291 NNVLYI 308
NNVLYI
Sbjct: 67 NNVLYI 72
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 19,679,343
Number of extensions: 524979
Number of successful extensions: 2017
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 2017
Number of HSP's successfully gapped: 2
Length of query: 171
Length of database: 18,297,164
Length adjustment: 95
Effective length of query: 76
Effective length of database: 15,165,584
Effective search space: 1152584384
Effective search space used: 1152584384
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 32 (16.9 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-004082
(514 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001177933.1| U6 snRNA-associated Sm-like protein LSm6 [Mu... 162 1e-40
Alignment gi|NP_084421.1| U6 snRNA-associated Sm-like protein LSm6 [Mus m... 162 1e-40
Alignment gi|NP_081522.1| small nuclear ribonucleoprotein F [Mus musculus]. 75 3e-14
Alignment gi|XP_895391.1| PREDICTED: small nuclear ribonucleoprotein F [M... 63 1e-10
Alignment gi|XP_911093.1| PREDICTED: small nuclear ribonucleoprotein F [M... 63 1e-10
>ref|NP_001177933.1| U6 snRNA-associated Sm-like protein LSm6 [Mus musculus].
Length = 80
Score = 162 bits (410), Expect = 1e-40
Identities = 80/80 (100%), Positives = 80/80 (100%)
Frame = +3
Query: 90 MSLRKQTPSDFLKQIIGRPVVVKLNSGVDYRGVLACLDGYMNIALEQTEEYVNGQLKNKY 269
MSLRKQTPSDFLKQIIGRPVVVKLNSGVDYRGVLACLDGYMNIALEQTEEYVNGQLKNKY
Sbjct: 1 MSLRKQTPSDFLKQIIGRPVVVKLNSGVDYRGVLACLDGYMNIALEQTEEYVNGQLKNKY 60
Query: 270 GDAFIRGNNVLYISTQKRRM 329
GDAFIRGNNVLYISTQKRRM
Sbjct: 61 GDAFIRGNNVLYISTQKRRM 80
>ref|NP_084421.1| U6 snRNA-associated Sm-like protein LSm6 [Mus musculus].
Length = 80
Score = 162 bits (410), Expect = 1e-40
Identities = 80/80 (100%), Positives = 80/80 (100%)
Frame = +3
Query: 90 MSLRKQTPSDFLKQIIGRPVVVKLNSGVDYRGVLACLDGYMNIALEQTEEYVNGQLKNKY 269
MSLRKQTPSDFLKQIIGRPVVVKLNSGVDYRGVLACLDGYMNIALEQTEEYVNGQLKNKY
Sbjct: 1 MSLRKQTPSDFLKQIIGRPVVVKLNSGVDYRGVLACLDGYMNIALEQTEEYVNGQLKNKY 60
Query: 270 GDAFIRGNNVLYISTQKRRM 329
GDAFIRGNNVLYISTQKRRM
Sbjct: 61 GDAFIRGNNVLYISTQKRRM 80
>ref|NP_081522.1| small nuclear ribonucleoprotein F [Mus musculus].
Length = 86
Score = 75.1 bits (183), Expect = 3e-14
Identities = 34/66 (51%), Positives = 45/66 (68%)
Frame = +3
Query: 111 PSDFLKQIIGRPVVVKLNSGVDYRGVLACLDGYMNIALEQTEEYVNGQLKNKYGDAFIRG 290
P FL + G+PV+VKL G++Y+G L +DGYMN+ L TEEY++G L G+ IR
Sbjct: 7 PKPFLNGLTGKPVMVKLKWGMEYKGYLVSVDGYMNMQLANTEEYIDGALSGHLGEVLIRC 66
Query: 291 NNVLYI 308
NNVLYI
Sbjct: 67 NNVLYI 72
>ref|XP_895391.1| PREDICTED: small nuclear ribonucleoprotein F [Mus musculus].
Length = 83
Score = 62.8 bits (151), Expect = 1e-10
Identities = 31/66 (46%), Positives = 42/66 (63%)
Frame = +3
Query: 111 PSDFLKQIIGRPVVVKLNSGVDYRGVLACLDGYMNIALEQTEEYVNGQLKNKYGDAFIRG 290
P L + G+PV+VKL G++Y L +DGYMN+ L TEEY++G+L G+ R
Sbjct: 7 PKTSLNGLTGKPVMVKLKWGMEY---LVSMDGYMNMQLANTEEYIDGELSEHLGEVLKRC 63
Query: 291 NNVLYI 308
NNVLYI
Sbjct: 64 NNVLYI 69
>ref|XP_911093.1| PREDICTED: small nuclear ribonucleoprotein F [Mus musculus].
Length = 83
Score = 62.8 bits (151), Expect = 1e-10
Identities = 31/66 (46%), Positives = 42/66 (63%)
Frame = +3
Query: 111 PSDFLKQIIGRPVVVKLNSGVDYRGVLACLDGYMNIALEQTEEYVNGQLKNKYGDAFIRG 290
P L + G+PV+VKL G++Y L +DGYMN+ L TEEY++G+L G+ R
Sbjct: 7 PKTSLNGLTGKPVMVKLKWGMEY---LVSMDGYMNMQLANTEEYIDGELSEHLGEVLKRC 63
Query: 291 NNVLYI 308
NNVLYI
Sbjct: 64 NNVLYI 69
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 16,830,372
Number of extensions: 446815
Number of successful extensions: 1659
Number of sequences better than 1.0e-05: 5
Number of HSP's gapped: 1657
Number of HSP's successfully gapped: 5
Length of query: 171
Length of database: 15,617,559
Length adjustment: 94
Effective length of query: 77
Effective length of database: 12,794,175
Effective search space: 985151475
Effective search space used: 985151475
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 32 (16.9 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-004082
(514 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_003357054.1| PREDICTED: u6 snRNA-associated Sm-like prote... 162 9e-41
Alignment gi|NP_001177142.1| small nuclear ribonucleoprotein polypeptide ... 75 2e-14
Alignment gi|XP_003129211.2| PREDICTED: hypothetical protein LOC100523078... 61 4e-10
>ref|XP_003357054.1| PREDICTED: u6 snRNA-associated Sm-like protein LSm6-like [Sus
scrofa].
Length = 80
Score = 162 bits (410), Expect = 9e-41
Identities = 80/80 (100%), Positives = 80/80 (100%)
Frame = +3
Query: 90 MSLRKQTPSDFLKQIIGRPVVVKLNSGVDYRGVLACLDGYMNIALEQTEEYVNGQLKNKY 269
MSLRKQTPSDFLKQIIGRPVVVKLNSGVDYRGVLACLDGYMNIALEQTEEYVNGQLKNKY
Sbjct: 1 MSLRKQTPSDFLKQIIGRPVVVKLNSGVDYRGVLACLDGYMNIALEQTEEYVNGQLKNKY 60
Query: 270 GDAFIRGNNVLYISTQKRRM 329
GDAFIRGNNVLYISTQKRRM
Sbjct: 61 GDAFIRGNNVLYISTQKRRM 80
>ref|NP_001177142.1| small nuclear ribonucleoprotein polypeptide F [Sus scrofa].
Length = 86
Score = 75.1 bits (183), Expect = 2e-14
Identities = 34/66 (51%), Positives = 45/66 (68%)
Frame = +3
Query: 111 PSDFLKQIIGRPVVVKLNSGVDYRGVLACLDGYMNIALEQTEEYVNGQLKNKYGDAFIRG 290
P FL + G+PV+VKL G++Y+G L +DGYMN+ L TEEY++G L G+ IR
Sbjct: 7 PKPFLNGLTGKPVMVKLKWGMEYKGYLVSVDGYMNMQLANTEEYIDGALSGHLGEVLIRC 66
Query: 291 NNVLYI 308
NNVLYI
Sbjct: 67 NNVLYI 72
>ref|XP_003129211.2| PREDICTED: hypothetical protein LOC100523078 [Sus scrofa].
Length = 87
Score = 60.8 bits (146), Expect = 4e-10
Identities = 24/27 (88%), Positives = 25/27 (92%)
Frame = +2
Query: 2 RVGWRRPGLWGPRSWGSVPGREISDQD 82
RVGWRRPGLWGPRSWGSVPGRE+S D
Sbjct: 23 RVGWRRPGLWGPRSWGSVPGREVSHSD 49
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 12,348,387
Number of extensions: 331161
Number of successful extensions: 1288
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 1288
Number of HSP's successfully gapped: 3
Length of query: 171
Length of database: 11,343,932
Length adjustment: 92
Effective length of query: 79
Effective length of database: 9,053,408
Effective search space: 715219232
Effective search space used: 715219232
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 31 (16.5 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-004082
(514 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr15 278 3e-72
Sscrofa_Chr08 236 1e-59
Sscrofa_Chr01 62 3e-07
>Sscrofa_Chr15
|| Length = 157681621
Score = 278 bits (140), Expect = 3e-72
Identities = 251/288 (87%)
Strand = Plus / Plus
Query: 68 atttctgaccaggattgttaaaatgagtctgcggaagcaaacacccagtgacttcctaaa 127
|||||||| ||||||||||||||||||| || |||||||||||||||||||||||| ||
Sbjct: 129865386 atttctgatcaggattgttaaaatgagtatgaagaagcaaacacccagtgacttcctcaa 129865445
Query: 128 gcaaatcattggacgaccagtagtggtaaaattaaattctggagtggattatcgaggggt 187
| |||||| ||||| |||||||||||||||||||||||||||| ||||||| || ||
Sbjct: 129865446 gaaaatcactggacaaccagtagtggtaaaattaaattctggaatggattactgacggac 129865505
Query: 188 cctggcgtgcctggacggctacatgaacatagccttggaacagacggaggagtatgtaaa 247
||||| | |||||| ||||||||||| | ||||||||||||| |||||||||||||||
Sbjct: 129865506 cctggttttcctggatggctacatgaatgttgccttggaacagatggaggagtatgtaaa 129865565
Query: 248 cggacagctgaagaacaagtacggggacgcatttatccgaggaaacaatgtgttgtacat 307
|||| | |||||||| ||||| |||| |||||||||||||| ||||||||||||| |||
Sbjct: 129865566 cggagaactgaagaataagtatgggggtgcatttatccgagggaacaatgtgttgtgcat 129865625
Query: 308 aagtacccagaagaggaggatgtaaagtcaccaagagtacaatacttt 355
|||||| ||||||||||| |||| ||| ||| | | ||||||||||||
Sbjct: 129865626 aagtacacagaagaggagcatgtgaagacactatgggtacaatacttt 129865673
Score = 278 bits (140), Expect = 3e-72
Identities = 251/288 (87%)
Strand = Plus / Plus
Query: 68 atttctgaccaggattgttaaaatgagtctgcggaagcaaacacccagtgacttcctaaa 127
|||||||| ||||||||||||||||||| || |||||||||||||||||||||||| ||
Sbjct: 130002306 atttctgatcaggattgttaaaatgagtatgaagaagcaaacacccagtgacttcctcaa 130002365
Query: 128 gcaaatcattggacgaccagtagtggtaaaattaaattctggagtggattatcgaggggt 187
| |||||| ||||| |||||||||||||||||||||||||||| ||||||| || ||
Sbjct: 130002366 gaaaatcactggacaaccagtagtggtaaaattaaattctggaatggattactgacggac 130002425
Query: 188 cctggcgtgcctggacggctacatgaacatagccttggaacagacggaggagtatgtaaa 247
||||| | |||||| ||||||||||| | ||||||||||||| |||||||||||||||
Sbjct: 130002426 cctggttttcctggatggctacatgaatgttgccttggaacagatggaggagtatgtaaa 130002485
Query: 248 cggacagctgaagaacaagtacggggacgcatttatccgaggaaacaatgtgttgtacat 307
|||| | |||||||| ||||| |||| |||||||||||||| ||||||||||||| |||
Sbjct: 130002486 cggagaactgaagaataagtatgggggtgcatttatccgagggaacaatgtgttgtgcat 130002545
Query: 308 aagtacccagaagaggaggatgtaaagtcaccaagagtacaatacttt 355
|||||| ||||||||||| |||| ||| ||| | | ||||||||||||
Sbjct: 130002546 aagtacacagaagaggagcatgtgaagacactatgggtacaatacttt 130002593
>Sscrofa_Chr08
|| Length = 148491826
Score = 236 bits (119), Expect = 1e-59
Identities = 119/119 (100%)
Strand = Plus / Minus
Query: 66 agatttctgaccaggattgttaaaatgagtctgcggaagcaaacacccagtgacttccta 125
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 87719680 agatttctgaccaggattgttaaaatgagtctgcggaagcaaacacccagtgacttccta 87719621
Query: 126 aagcaaatcattggacgaccagtagtggtaaaattaaattctggagtggattatcgagg 184
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 87719620 aagcaaatcattggacgaccagtagtggtaaaattaaattctggagtggattatcgagg 87719562
Score = 230 bits (116), Expect = 6e-58
Identities = 116/116 (100%)
Strand = Plus / Minus
Query: 182 aggggtcctggcgtgcctggacggctacatgaacatagccttggaacagacggaggagta 241
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 87715314 aggggtcctggcgtgcctggacggctacatgaacatagccttggaacagacggaggagta 87715255
Query: 242 tgtaaacggacagctgaagaacaagtacggggacgcatttatccgaggaaacaatg 297
||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 87715254 tgtaaacggacagctgaagaacaagtacggggacgcatttatccgaggaaacaatg 87715199
Score = 147 bits (74), Expect = 7e-33
Identities = 74/74 (100%)
Strand = Plus / Minus
Query: 297 gtgttgtacataagtacccagaagaggaggatgtaaagtcaccaagagtacaatactttt 356
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 87712210 gtgttgtacataagtacccagaagaggaggatgtaaagtcaccaagagtacaatactttt 87712151
Query: 357 cgtactgggatata 370
||||||||||||||
Sbjct: 87712150 cgtactgggatata 87712137
Score = 123 bits (62), Expect = 1e-25
Identities = 65/66 (98%)
Strand = Plus / Minus
Query: 2 cgggttggttggcggaggccgggcttgtggggcccccggagttggggttctgttcccggc 61
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 87727453 cgggttggttggcggaggccgggcttgtggggtccccggagttggggttctgttcccggc 87727394
Query: 62 cgcgag 67
||||||
Sbjct: 87727393 cgcgag 87727388
Score = 115 bits (58), Expect = 2e-23
Identities = 58/58 (100%)
Strand = Plus / Minus
Query: 423 aacagttgtgatttttcactgacatgtgaataagataaatatatacaattgtggattt 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 87712084 aacagttgtgatttttcactgacatgtgaataagataaatatatacaattgtggattt 87712027
>Sscrofa_Chr01
|| Length = 315321322
Score = 61.9 bits (31), Expect = 3e-07
Identities = 49/55 (89%)
Strand = Plus / Minus
Query: 426 agttgtgatttttcactgacatgtgaataagataaatatatacaattgtggattt 480
||||||||||||||||||||| |||||| |||||| ||||| |||||||||||
Sbjct: 176757832 agttgtgatttttcactgacacatgaatacgataaaaatataggattgtggattt 176757778
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 11,900,026
Number of extensions: 315
Number of successful extensions: 315
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 313
Number of HSP's successfully gapped: 8
Length of query: 514
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 493
Effective length of database: 2,808,413,156
Effective search space: 1384547685908
Effective search space used: 1384547685908
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 17 (34.2 bits)
S2: 29 (58.0 bits)