Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-004097
(938 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_002696008.1| PREDICTED: gasdermin B [Bos taurus]. 230 1e-60
Alignment gi|XP_586229.2| PREDICTED: gasdermin B isoform 2 [Bos taurus]. 229 2e-60
Alignment gi|NP_001071558.1| gasdermin-A [Bos taurus]. 69 8e-12
>ref|XP_002696008.1| PREDICTED: gasdermin B [Bos taurus].
Length = 443
Score = 230 bits (587), Expect = 1e-60
Identities = 137/306 (44%), Positives = 184/306 (60%), Gaps = 32/306 (10%)
Frame = +1
Query: 115 MPKEFEAATRAVVREVDPRGDWIAVRSLTDADRFHCLYLVKKKKRFFGHQYDKADLSLLD 294
MP FE+ +RAVV+E+D G+ IAVRSL+DAD+FHC YLVKK++RFFG+QYDK +L+L D
Sbjct: 1 MPTVFESISRAVVKEIDTSGETIAVRSLSDADKFHCSYLVKKRRRFFGYQYDKTNLTLKD 60
Query: 295 ILEVQEGDELFDKLV---------SGLQDHKAP----------------------FRVTD 381
ILE + FD +V SG++ A F + D
Sbjct: 61 ILECEVP---FDMVVPELQGDLPDSGIKPASAALPEDSLPLSHLGNPHNKGQGDNFEILD 117
Query: 382 NVDSKGGLTVKLPENMMFEVATYRSRKCNAEVSGSRTPRQLLAALENTKLKRKLPDSFQS 561
VDSKG L VK M F++A + ++ N ++ S P++ L +L+N KLK++LP SFQS
Sbjct: 118 VVDSKGSLAVKFHPQMTFKIAFHIFQEKNIKLEKSEIPQEFLDSLKNKKLKKELPPSFQS 177
Query: 562 IRAMRXXXXXXXXXXXXXXXXXXXSEQGCVIQLLVDCLGFRYRRKRQKAVTVPPGTVLGY 741
I+A R E Q+L+ GF+ + K QK VT+ P VL Y
Sbjct: 178 IQAKREDLYLVTETLKTKRTETLKYETQFGFQILLKMFGFQCKHKHQKEVTITPEKVLAY 237
Query: 742 RLKQLVFPNEESMNI-ISEKTKSFPHEKDGGASCLGKSLSLEGSRSMKEKVQDLVRVLQD 918
R+KQLVFP+ E M+I +KT+SFP EKDGG+S LGKSL+L+ RS+KE VQD+VRVLQD
Sbjct: 238 RVKQLVFPSAERMDICFLDKTRSFPEEKDGGSSWLGKSLNLQNFRSIKETVQDMVRVLQD 297
Query: 919 LTEKEQ 936
LT +EQ
Sbjct: 298 LTPEEQ 303
>ref|XP_586229.2| PREDICTED: gasdermin B isoform 2 [Bos taurus].
Length = 443
Score = 229 bits (585), Expect = 2e-60
Identities = 137/306 (44%), Positives = 184/306 (60%), Gaps = 32/306 (10%)
Frame = +1
Query: 115 MPKEFEAATRAVVREVDPRGDWIAVRSLTDADRFHCLYLVKKKKRFFGHQYDKADLSLLD 294
MP FE+ +RAVV+E+D G+ IAVRSL+DAD+FHC YLVKK++RFFG+QYDK +L+L D
Sbjct: 1 MPTVFESISRAVVKEIDTSGETIAVRSLSDADKFHCSYLVKKRRRFFGYQYDKTNLTLKD 60
Query: 295 ILEVQEGDELFDKLV---------SGLQDHKAP----------------------FRVTD 381
ILE + FD +V SG++ A F + D
Sbjct: 61 ILECEVP---FDMVVPELQGDLPDSGIKPASAALPEDSLPLSHLGNPHNKGQGDNFEILD 117
Query: 382 NVDSKGGLTVKLPENMMFEVATYRSRKCNAEVSGSRTPRQLLAALENTKLKRKLPDSFQS 561
VDSKG L VK M F++A + ++ N ++ S P++ L +L+N KLK++LP SFQS
Sbjct: 118 VVDSKGSLAVKFHPQMTFKIAFHIFQEKNIKLEKSEIPQEFLDSLKNKKLKKELPPSFQS 177
Query: 562 IRAMRXXXXXXXXXXXXXXXXXXXSEQGCVIQLLVDCLGFRYRRKRQKAVTVPPGTVLGY 741
I+A R E Q+L+ GF+ + K QK VT+ P VL Y
Sbjct: 178 IQAKREDLYLVTETLKTKRTETLKYETQFGFQILLKMFGFQCKHKHQKEVTITPEKVLAY 237
Query: 742 RLKQLVFPNEESMNI-ISEKTKSFPHEKDGGASCLGKSLSLEGSRSMKEKVQDLVRVLQD 918
R+KQLVFP+ E M+I +KT+SFP EKDGG+S LGKSL+L+ RS+KE VQD+VRVLQD
Sbjct: 238 RVKQLVFPSAERMDICFLDKTRSFPEEKDGGSSWLGKSLNLQNFRSIKETVQDMVRVLQD 297
Query: 919 LTEKEQ 936
LT +EQ
Sbjct: 298 LTLEEQ 303
>ref|NP_001071558.1| gasdermin-A [Bos taurus].
Length = 446
Score = 68.6 bits (166), Expect = 8e-12
Identities = 77/284 (27%), Positives = 120/284 (42%), Gaps = 18/284 (6%)
Frame = +1
Query: 127 FEAATRAVVREVDPRGDWIAVRSLTDADRFH--CLYLVKKKKR-FFGHQYDKADLSLLDI 297
FE TRA+ R+++PRGD + SL D RFH CL L K+K F+G +Y D + LDI
Sbjct: 4 FENVTRALTRQLNPRGDLTPLDSLIDFKRFHPFCLVLRKRKSTLFWGARYVCTDYTFLDI 63
Query: 298 LEVQEGDELFDKLVSGLQDHKAPFRVTDNVDSKGGLTVKLPENMMFEVATYRSRKCNAEV 477
LE G D SG F + +D++ V +P+ + + SR EV
Sbjct: 64 LE--PGSSPSDPTDSG------NFGFKNMLDARVEGEVDVPKTVKVKGTAGLSRNSTLEV 115
Query: 478 SGSRTPRQLLAALENTKLKRKLPDSFQSIRAMRXXXXXXXXXXXXXXXXXXXS------E 639
+T ALE +RKL + MR +
Sbjct: 116 ---QTLSVAPKALETLHQERKLMAEHPFLEEMRRRGENLYVVMEVVEAVQEVTLERAGRA 172
Query: 640 QGCVIQLLVDCLGFRYRRKRQKAVTVPPGTVLGYRLKQLVFPNEESM---NIISEKTKSF 810
+GC LG + ++AVT+P G VL +R++QL+ ++ +I ++ +F
Sbjct: 173 EGCFSLPFFAPLGLQGSVNHKEAVTIPKGCVLAFRVRQLMVKGKDEWDIPHIYNDNMHTF 232
Query: 811 P------HEKDGGASCLGKSLSLEGSRSMKEKVQDLVRVLQDLT 924
P EK E R++KE+VQ + ++ L+
Sbjct: 233 PPGEKPEDEKFTLIQASDVGAVHEDFRTLKEEVQRETQEVEKLS 276
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 37,119,131
Number of extensions: 1026569
Number of successful extensions: 3787
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 3774
Number of HSP's successfully gapped: 3
Length of query: 312
Length of database: 17,681,374
Length adjustment: 102
Effective length of query: 210
Effective length of database: 14,306,398
Effective search space: 3004343580
Effective search space used: 3004343580
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-004097
(938 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_850338.1| PREDICTED: similar to gasdermin 1 [Canis famili... 70 2e-12
>ref|XP_850338.1| PREDICTED: similar to gasdermin 1 [Canis familiaris].
Length = 442
Score = 70.5 bits (171), Expect = 2e-12
Identities = 74/293 (25%), Positives = 132/293 (45%), Gaps = 23/293 (7%)
Frame = +1
Query: 127 FEAATRAVVREVDPRGDWIAVRSLTDADRFH--CLYLVKKKKR-FFGHQYDKADLSLLDI 297
FE TRA+ R+++PRGD + SL D RFH CL L K+K F+G +Y + D +LLD+
Sbjct: 4 FENVTRALARQLNPRGDLTPLDSLIDFKRFHPFCLVLRKRKSTLFWGARYVRTDYTLLDV 63
Query: 298 LE--------VQEGDELFDKLVSGLQDHKAPFRVTDNVDSKGGLT-VKLPENMMFEVATY 450
LE G+ F K + + + + T V GL+ + +VA Y
Sbjct: 64 LEPGSSPSDPTDSGNFSFKKTLDARVEGEVIVQKTVKVTGTAGLSRSSTLRSRHSQVAPY 123
Query: 451 RSRKCNAEVSGSRT-PRQLLAALENTKLKRKLPDSFQSIRAMRXXXXXXXXXXXXXXXXX 627
C+ ++S +++ EN + ++ ++ Q + R
Sbjct: 124 -CFSCHRKLSAEHPFLKEMRNRGENLYVVMEVVETAQEVTLER----------------- 165
Query: 628 XXSEQGCVIQLLVDCLGFRYRRKRQKAVTVPPGTVLGYRLKQLVFPNEESM---NIISEK 798
+GC LG + ++AVT+P G +L +R++QL+ +E +I ++
Sbjct: 166 ASKAEGCFSLPFFAPLGLQGSIDHKEAVTIPKGCILAFRVRQLMVKGKEEWDIPHICNDS 225
Query: 799 TKSFPHEKDGG-------ASCLGKSLSLEGSRSMKEKVQDLVRVLQDLTEKEQ 936
++FP E+ AS G+ E +++KE+VQ ++ ++ L+ Q
Sbjct: 226 MQTFPPEEKPEEKFTFILASDAGE--EHENFKTLKEEVQREIQEVEKLSRVGQ 276
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 38,834,329
Number of extensions: 1057836
Number of successful extensions: 3849
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 3847
Number of HSP's successfully gapped: 1
Length of query: 312
Length of database: 18,874,504
Length adjustment: 103
Effective length of query: 209
Effective length of database: 15,440,896
Effective search space: 3227147264
Effective search space used: 3227147264
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-004097
(938 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001159430.1| gasdermin-B isoform 3 [Homo sapiens]. 220 1e-57
Alignment gi|NP_001035936.1| gasdermin-B isoform 1 [Homo sapiens]. 199 2e-51
Alignment gi|NP_001159431.1| gasdermin-B isoform 4 [Homo sapiens]. 197 1e-50
Alignment gi|NP_061000.2| gasdermin-B isoform 2 [Homo sapiens]. 180 2e-45
Alignment gi|NP_835465.2| gasdermin-A [Homo sapiens]. 71 1e-12
Alignment gi|NP_001120925.1| non-syndromic hearing impairment protein 5 i... 49 5e-06
Alignment gi|NP_004394.1| non-syndromic hearing impairment protein 5 isof... 49 5e-06
>ref|NP_001159430.1| gasdermin-B isoform 3 [Homo sapiens].
Length = 416
Score = 220 bits (561), Expect = 1e-57
Identities = 127/271 (46%), Positives = 170/271 (62%), Gaps = 1/271 (0%)
Frame = +1
Query: 127 FEAATRAVVREVDPRGDWIAVRSLTDADRFHCLYLVKKKKRFFGHQYDKADLSLLDILEV 306
FE TR VV+E+D GD IAVRSL DADRF C +LV +K+ FFG ++ L+L+DIL+
Sbjct: 5 FEEITRIVVKEMDAGGDMIAVRSLVDADRFRCFHLVGEKRTFFGCRHYTTGLTLMDILDT 64
Query: 307 QEGDELFDKLVSGLQDHKAPFRVTDNVDSKGGLTVKLPENMMFEVATYRSRKCNAEVSGS 486
+GD+ D+L SGLQ KA F++ DNVDS G L V+LP+ + + ++S +
Sbjct: 65 -DGDKWLDELDSGLQGQKAEFQILDNVDSTGELIVRLPKEITISGSFQGFHHQKIKISEN 123
Query: 487 RTPRQLLAALENTKLKRKLPDSFQSIRAMRXXXXXXXXXXXXXXXXXXXSEQGCVIQLLV 666
R +Q LA LEN KLKR+LP SF+SI R S++ +
Sbjct: 124 RISQQYLATLENRKLKRELPFSFRSINT-RENLYLVTETLETVKEETLKSDRQYKFWSQI 182
Query: 667 DCLGFRYRRKRQKAVTVPPGTVLGYRLKQLVFPNEESMNI-ISEKTKSFPHEKDGGASCL 843
Y+ K Q+ VT+PP VL YR+KQLVFPN+E+MNI KTKSFP EKDG +SCL
Sbjct: 183 SQGHLSYKHKGQREVTIPPNRVLSYRVKQLVFPNKETMNIHFRGKTKSFPEEKDGASSCL 242
Query: 844 GKSLSLEGSRSMKEKVQDLVRVLQDLTEKEQ 936
GKSL E SR+MKEK++D+ VL+DLTE+++
Sbjct: 243 GKSLGSEDSRNMKEKLEDMESVLKDLTEEKR 273
>ref|NP_001035936.1| gasdermin-B isoform 1 [Homo sapiens].
Length = 403
Score = 199 bits (507), Expect = 2e-51
Identities = 118/270 (43%), Positives = 162/270 (60%)
Frame = +1
Query: 127 FEAATRAVVREVDPRGDWIAVRSLTDADRFHCLYLVKKKKRFFGHQYDKADLSLLDILEV 306
FE TR VV+E+D GD IAVRSL DADRF C +LV +K+ FFG ++ L+L+DIL+
Sbjct: 5 FEEITRIVVKEMDAGGDMIAVRSLVDADRFRCFHLVGEKRTFFGCRHYTTGLTLMDILDT 64
Query: 307 QEGDELFDKLVSGLQDHKAPFRVTDNVDSKGGLTVKLPENMMFEVATYRSRKCNAEVSGS 486
+GD+ D+L SGLQ KA F++ DNVDS G L V+LP+ + + ++S +
Sbjct: 65 -DGDKWLDELDSGLQGQKAEFQILDNVDSTGELIVRLPKEITISGSFQGFHHQKIKISEN 123
Query: 487 RTPRQLLAALENTKLKRKLPDSFQSIRAMRXXXXXXXXXXXXXXXXXXXSEQGCVIQLLV 666
R +Q LA LEN KLKR+LP SF+SI R S++ +
Sbjct: 124 RISQQYLATLENRKLKRELPFSFRSINT-RENLYLVTETLETVKEETLKSDRQYKFWSQI 182
Query: 667 DCLGFRYRRKRQKAVTVPPGTVLGYRLKQLVFPNEESMNIISEKTKSFPHEKDGGASCLG 846
Y+ K Q+ VT+PP VL YR+KQLVFPN+E+M +KDG +SCLG
Sbjct: 183 SQGHLSYKHKGQREVTIPPNRVLSYRVKQLVFPNKETM------------KKDGASSCLG 230
Query: 847 KSLSLEGSRSMKEKVQDLVRVLQDLTEKEQ 936
KSL E SR+MKEK++D+ VL+DLTE+++
Sbjct: 231 KSLGSEDSRNMKEKLEDMESVLKDLTEEKR 260
>ref|NP_001159431.1| gasdermin-B isoform 4 [Homo sapiens].
Length = 407
Score = 197 bits (501), Expect = 1e-50
Identities = 120/271 (44%), Positives = 162/271 (59%), Gaps = 1/271 (0%)
Frame = +1
Query: 127 FEAATRAVVREVDPRGDWIAVRSLTDADRFHCLYLVKKKKRFFGHQYDKADLSLLDILEV 306
FE TR VV+E+D GD IAVRSL DADRF C +LV +K+ FFG ++ L+L+DIL+
Sbjct: 5 FEEITRIVVKEMDAGGDMIAVRSLVDADRFRCFHLVGEKRTFFGCRHYTTGLTLMDILDT 64
Query: 307 QEGDELFDKLVSGLQDHKAPFRVTDNVDSKGGLTVKLPENMMFEVATYRSRKCNAEVSGS 486
+GD+ D+L SGLQ KA F++ DNVDS G L V+LP+ + + ++S +
Sbjct: 65 -DGDKWLDELDSGLQGQKAEFQILDNVDSTGELIVRLPKEITISGSFQGFHHQKIKISEN 123
Query: 487 RTPRQLLAALENTKLKRKLPDSFQSIRAMRXXXXXXXXXXXXXXXXXXXSEQGCVIQLLV 666
R +Q LA LEN KLKR+LP SF+SI R S++ +
Sbjct: 124 RISQQYLATLENRKLKRELPFSFRSINT-RENLYLVTETLETVKEETLKSDRQYKFWSQI 182
Query: 667 DCLGFRYRRKRQKAVTVPPGTVLGYRLKQLVFPNEESMNI-ISEKTKSFPHEKDGGASCL 843
Y+ K Q+ VT+PP VL YR+KQLVFPN+E+MNI KTKSFP
Sbjct: 183 SQGHLSYKHKGQREVTIPPNRVLSYRVKQLVFPNKETMNIHFRGKTKSFPE--------- 233
Query: 844 GKSLSLEGSRSMKEKVQDLVRVLQDLTEKEQ 936
GKSL E SR+MKEK++D+ VL+DLTE+++
Sbjct: 234 GKSLGSEDSRNMKEKLEDMESVLKDLTEEKR 264
>ref|NP_061000.2| gasdermin-B isoform 2 [Homo sapiens].
Length = 394
Score = 180 bits (456), Expect = 2e-45
Identities = 111/270 (41%), Positives = 153/270 (56%)
Frame = +1
Query: 127 FEAATRAVVREVDPRGDWIAVRSLTDADRFHCLYLVKKKKRFFGHQYDKADLSLLDILEV 306
FE TR VV+E+D GD IAVRSL DADRF C +LV +K+ FFG ++ L+L+DIL+
Sbjct: 5 FEEITRIVVKEMDAGGDMIAVRSLVDADRFRCFHLVGEKRTFFGCRHYTTGLTLMDILDT 64
Query: 307 QEGDELFDKLVSGLQDHKAPFRVTDNVDSKGGLTVKLPENMMFEVATYRSRKCNAEVSGS 486
+GD+ D+L SGLQ KA F++ DNVDS G L V+LP+ + + ++S +
Sbjct: 65 -DGDKWLDELDSGLQGQKAEFQILDNVDSTGELIVRLPKEITISGSFQGFHHQKIKISEN 123
Query: 487 RTPRQLLAALENTKLKRKLPDSFQSIRAMRXXXXXXXXXXXXXXXXXXXSEQGCVIQLLV 666
R +Q LA LEN KLKR+LP SF+SI R S++ +
Sbjct: 124 RISQQYLATLENRKLKRELPFSFRSINT-RENLYLVTETLETVKEETLKSDRQYKFWSQI 182
Query: 667 DCLGFRYRRKRQKAVTVPPGTVLGYRLKQLVFPNEESMNIISEKTKSFPHEKDGGASCLG 846
Y+ K Q+ VT+PP VL YR+KQLVFPN+E+M
Sbjct: 183 SQGHLSYKHKGQREVTIPPNRVLSYRVKQLVFPNKETMR--------------------- 221
Query: 847 KSLSLEGSRSMKEKVQDLVRVLQDLTEKEQ 936
KSL E SR+MKEK++D+ VL+DLTE+++
Sbjct: 222 KSLGSEDSRNMKEKLEDMESVLKDLTEEKR 251
>ref|NP_835465.2| gasdermin-A [Homo sapiens].
Length = 445
Score = 71.2 bits (173), Expect = 1e-12
Identities = 74/284 (26%), Positives = 122/284 (42%), Gaps = 14/284 (4%)
Frame = +1
Query: 127 FEAATRAVVREVDPRGDWIAVRSLTDADRFH--CLYLVKKKKR-FFGHQYDKADLSLLDI 297
FE TRA+ R+++PRGD + SL D RFH CL L K+K F+G +Y + D +LLD+
Sbjct: 4 FENVTRALARQLNPRGDLTPLDSLIDFKRFHPFCLVLRKRKSTLFWGARYVRTDYTLLDV 63
Query: 298 LEVQEGDELFDKLVSGLQDHKAPFRVTDNVDSKGGLTVKLPENMMFEVATYRSRKCNAEV 477
LE G D +G F + +D++ V +P+ + + S+ EV
Sbjct: 64 LE--PGSSPSDPTDTG------NFGFKNMLDTRVEGDVDVPKTVKVKGTAGLSQNSTLEV 115
Query: 478 SGSRTPRQLLAALENTKLKRKLP--DSFQSIRAMRXXXXXXXXXXXXXXXXXXXSEQGCV 651
+ L ++ KL P Q + C
Sbjct: 116 QTLSVAPKALETVQERKLAADHPFLKEMQDQGENLYVVMEVVETVQEVTLERAGKAEACF 175
Query: 652 IQLLVDCLGFRYRRKRQKAVTVPPGTVLGYRLKQLVFPNEESM---NIISEKTKSF-PHE 819
LG + ++AVT+P G VL +R++QL+ ++ +I ++ ++F P E
Sbjct: 176 SLPFFAPLGLQGSINHKEAVTIPKGCVLAFRVRQLMVKGKDEWDIPHICNDNMQTFPPGE 235
Query: 820 KDGGASCLGKSLS-----LEGSRSMKEKVQDLVRVLQDLTEKEQ 936
K G + S EG R++KE+VQ + ++ L+ Q
Sbjct: 236 KSGEEKVILIQASDVGDVHEGFRTLKEEVQRETQQVEKLSRVGQ 279
>ref|NP_001120925.1| non-syndromic hearing impairment protein 5 isoform a [Homo
sapiens].
Length = 496
Score = 49.3 bits (116), Expect = 5e-06
Identities = 30/61 (49%), Positives = 37/61 (60%), Gaps = 3/61 (4%)
Frame = +1
Query: 127 FEAATRAVVREVDPRGDWIAVRSLTDADRFHCLYLVKKKKRFFGHQ---YDKADLSLLDI 297
F ATR +REVD GD IAV +L D+D+ L LV KKKRF+ Q Y L+L D+
Sbjct: 2 FAKATRNFLREVDADGDLIAVSNLNDSDKLQLLSLVTKKKRFWCWQRPKYQFLSLTLGDV 61
Query: 298 L 300
L
Sbjct: 62 L 62
>ref|NP_004394.1| non-syndromic hearing impairment protein 5 isoform a [Homo
sapiens].
Length = 496
Score = 49.3 bits (116), Expect = 5e-06
Identities = 30/61 (49%), Positives = 37/61 (60%), Gaps = 3/61 (4%)
Frame = +1
Query: 127 FEAATRAVVREVDPRGDWIAVRSLTDADRFHCLYLVKKKKRFFGHQ---YDKADLSLLDI 297
F ATR +REVD GD IAV +L D+D+ L LV KKKRF+ Q Y L+L D+
Sbjct: 2 FAKATRNFLREVDADGDLIAVSNLNDSDKLQLLSLVTKKKRFWCWQRPKYQFLSLTLGDV 61
Query: 298 L 300
L
Sbjct: 62 L 62
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 38,028,523
Number of extensions: 1039988
Number of successful extensions: 3907
Number of sequences better than 1.0e-05: 7
Number of HSP's gapped: 3894
Number of HSP's successfully gapped: 7
Length of query: 312
Length of database: 18,297,164
Length adjustment: 102
Effective length of query: 210
Effective length of database: 14,934,836
Effective search space: 3136315560
Effective search space used: 3136315560
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-004097
(938 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_067322.1| gasdermin-A [Mus musculus]. 79 5e-15
Alignment gi|NP_084003.2| gasdermin-A2 [Mus musculus]. 74 2e-13
Alignment gi|NP_001007462.1| gasdermin-A3 [Mus musculus]. 67 3e-11
>ref|NP_067322.1| gasdermin-A [Mus musculus].
Length = 446
Score = 79.0 bits (193), Expect = 5e-15
Identities = 79/287 (27%), Positives = 129/287 (44%), Gaps = 21/287 (7%)
Frame = +1
Query: 127 FEAATRAVVREVDPRGDWIAVRSLTDADRFH--CLYLVKKKKR-FFGHQYDKADLSLLDI 297
FE TRA+ R+++PRGD + SL D RFH CL L K+K F+G +Y D +LLD+
Sbjct: 4 FENVTRALARQLNPRGDLTPLDSLIDFKRFHPFCLVLRKRKSTLFWGARYVHTDYTLLDV 63
Query: 298 LEVQEGDELFDKLVSGLQDHKAPFRVTDNVDSKGGLTVKLPENMMFEVATYRSRKCNAEV 477
LE G D SG F + +D++ V +P+ + + SR EV
Sbjct: 64 LE--PGSSPSDPTDSG------NFSFKNMLDARVEGDVDVPKTVKVKGTAGLSRSSTLEV 115
Query: 478 SGSRTPRQLLAALENTKLKRKLPDSFQSIRAMRXXXXXXXXXXXXXXXXXXXS------E 639
+T ALEN +RKL ++ MR +
Sbjct: 116 ---QTLSVAPTALENLHKERKLSADHPFLKEMRERGENLYVVMEVVETLQEVTLERAGKA 172
Query: 640 QGCVIQLLVDCLGFRYRRKRQKAVTVPPGTVLGYRLKQLVFPNEESM---NIISEKTKSF 810
+GC LG + ++AVT+P G VL YR++QL+ ++ +I ++ ++F
Sbjct: 173 EGCFSLPFFAPLGLQGSVNHKEAVTIPKGCVLAYRVRQLMVNGKDEWGIPHICNDSMQTF 232
Query: 811 PHEKDGGASCLGKSLSLEGS---------RSMKEKVQDLVRVLQDLT 924
P + G GK + ++ S +++KE+VQ + ++ L+
Sbjct: 233 PPGEKPGE---GKFILIQASDVGEMHEDFKTLKEEVQRETQEVEKLS 276
>ref|NP_084003.2| gasdermin-A2 [Mus musculus].
Length = 443
Score = 73.9 bits (180), Expect = 2e-13
Identities = 79/286 (27%), Positives = 125/286 (43%), Gaps = 20/286 (6%)
Frame = +1
Query: 127 FEAATRAVVREVDPRGDWIAVRSLTDADRFH--CLYLVKKKKR-FFGHQYDKADLSLLDI 297
FE TRA+ R+++PRGD + SL D RFH CL L K+K F+G +Y + D +LLD+
Sbjct: 4 FEDVTRALARQLNPRGDLTPLDSLIDFKRFHPFCLVLRKRKSTLFWGARYVRTDYTLLDV 63
Query: 298 LEVQEGDELFDKLVSGLQDHKAPFRVTDNVDSKGGLTVKLPENMMFEVATYRSRKCNAEV 477
LE G D + G N K L V++ ++ EV T K +
Sbjct: 64 LE--PGSSPSDPTLLG------------NFSFKNMLDVRVEGDV--EVPTMMKVKGTVGL 107
Query: 478 SGSRTPR-QLLA----ALENTKLKRKLPDSFQSIRAMR-----XXXXXXXXXXXXXXXXX 627
S S T Q+L+ ALEN ++RKL ++ MR
Sbjct: 108 SQSSTLEVQMLSVAPTALENLHMERKLSADHPFLKEMREYKQNLYVVMEVVKAKQEVTLK 167
Query: 628 XXSEQGCVIQLLVDCLGFRYRRKRQKAVTVPPGTVLGYRLKQLVFPNEESMNIISEKTKS 807
S L + LG + ++AVT+P G VL YR++QL+ ++ I T +
Sbjct: 168 RASNAISKFSLNLPSLGLQGSVNHKEAVTIPKGCVLAYRVRQLIIYGKDEWGIPYICTDN 227
Query: 808 FPH-------EKDGGASCLGKSLSLEGSRSMKEKVQDLVRVLQDLT 924
P ++ G + E +++K++VQ + ++ L+
Sbjct: 228 MPTFNPLCVLQRQGSTVQMISGEMHEDFKTLKKEVQQETQEVEKLS 273
>ref|NP_001007462.1| gasdermin-A3 [Mus musculus].
Length = 464
Score = 66.6 bits (161), Expect = 3e-11
Identities = 70/241 (29%), Positives = 107/241 (44%), Gaps = 12/241 (4%)
Frame = +1
Query: 127 FEAATRAVVREVDPRGDWIAVRSLTDADRFH--CLYLVKKKKR-FFGHQYDKADLSLLDI 297
FE TRA+VRE++PRGD + SL D F CL L K+K F+G +Y + D +LLD+
Sbjct: 4 FEDVTRALVRELNPRGDLTPLDSLIDFKHFRPFCLVLRKRKSTLFWGARYVRTDYTLLDL 63
Query: 298 LEVQEGDELFDKLVSGLQDHKAPFRVTDNVDSKGGLTVKLPENMMFEVATYRSRKCNAEV 477
LE G D SG F + +D + V++P+ + + S+ EV
Sbjct: 64 LE--PGSSPSDLTDSG------NFSFKNMLDVQVQGLVEVPKTVKVKGTAGLSQSSTLEV 115
Query: 478 SGSRTPRQLLAALENTKLKRKLPDSFQSIRAMRXXXXXXXXXXXXXXXXXXXSEQ----- 642
+T +ALEN K +RKL + MR + +
Sbjct: 116 ---QTLSVAPSALENLKKERKLSADHSFLNEMRYHEKNLYVVMEAVEAKQEVTVEQTGNA 172
Query: 643 GCVIQL-LVDCLGFRYRRKRQKAVTVPPGTVLGYRLKQL---VFPNEESMNIISEKTKSF 810
+ L + LG + KAVT+P G VL YR++ L +F + I ++ ++F
Sbjct: 173 NAIFSLPSLALLGLQGSLNNNKAVTIPKGCVLAYRVRLLRVFLFNLWDIPYICNDSMQTF 232
Query: 811 P 813
P
Sbjct: 233 P 233
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 32,085,967
Number of extensions: 864278
Number of successful extensions: 2943
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 2935
Number of HSP's successfully gapped: 5
Length of query: 312
Length of database: 15,617,559
Length adjustment: 101
Effective length of query: 211
Effective length of database: 12,583,923
Effective search space: 2655207753
Effective search space used: 2655207753
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-004097
(938 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_003131561.2| PREDICTED: gasdermin-B-like [Sus scrofa]. 499 e-142
Alignment gi|XP_003131549.1| PREDICTED: gasdermin-B-like [Sus scrofa]. 499 e-142
Alignment gi|XP_003358112.1| PREDICTED: gasdermin-B-like [Sus scrofa]. 159 2e-39
Alignment gi|XP_003131563.2| PREDICTED: putative LRRC3-like protein ENSP0... 105 4e-23
Alignment gi|XP_003358111.1| PREDICTED: putative LRRC3-like protein ENSP0... 105 4e-23
Alignment gi|XP_003358113.1| PREDICTED: hypothetical protein LOC100624344... 103 2e-22
Alignment gi|XP_003131539.2| PREDICTED: gasdermin-A-like [Sus scrofa]. 72 4e-13
Alignment gi|XP_003131545.1| PREDICTED: gasdermin-A-like [Sus scrofa]. 71 1e-12
Alignment gi|XP_003361018.1| PREDICTED: gasdermin-A-like [Sus scrofa]. 50 2e-06
>ref|XP_003131561.2| PREDICTED: gasdermin-B-like [Sus scrofa].
Length = 413
Score = 499 bits (1285), Expect = e-142
Identities = 255/274 (93%), Positives = 255/274 (93%)
Frame = +1
Query: 115 MPKEFEAATRAVVREVDPRGDWIAVRSLTDADRFHCLYLVKKKKRFFGHQYDKADLSLLD 294
MPKEFEAATRAVVREVDPRGDWIAVRSLTDADRFHCLYLVKKKKRFFGHQYDKADLSLLD
Sbjct: 1 MPKEFEAATRAVVREVDPRGDWIAVRSLTDADRFHCLYLVKKKKRFFGHQYDKADLSLLD 60
Query: 295 ILEVQEGDELFDKLVSGLQDHKAPFRVTDNVDSKGGLTVKLPENMMFEVATYRSRKCNAE 474
ILEVQEGDELFDKLVSGLQDHKAPFRVTDNVDSKGGLTVKLPENMMFEVATYRSRKCNAE
Sbjct: 61 ILEVQEGDELFDKLVSGLQDHKAPFRVTDNVDSKGGLTVKLPENMMFEVATYRSRKCNAE 120
Query: 475 VSGSRTPRQLLAALENTKLKRKLPDSFQSIRAMRXXXXXXXXXXXXXXXXXXXSEQGCVI 654
VSGSRTPRQLLAALENTKLKRKLPDSFQSIRAMR SEQGCVI
Sbjct: 121 VSGSRTPRQLLAALENTKLKRKLPDSFQSIRAMREDLYLVTETLTTTKTETLESEQGCVI 180
Query: 655 QLLVDCLGFRYRRKRQKAVTVPPGTVLGYRLKQLVFPNEESMNIISEKTKSFPHEKDGGA 834
QLLVDCLGFRYRRKRQKAVTVPPGTVLGYRLKQLVFPNEESMNIISEKTKSFPHEKDGGA
Sbjct: 181 QLLVDCLGFRYRRKRQKAVTVPPGTVLGYRLKQLVFPNEESMNIISEKTKSFPHEKDGGA 240
Query: 835 SCLGKSLSLEGSRSMKEKVQDLVRVLQDLTEKEQ 936
SCLGKSLSLEGSRSMKEKVQDLVRVLQDLTEKEQ
Sbjct: 241 SCLGKSLSLEGSRSMKEKVQDLVRVLQDLTEKEQ 274
>ref|XP_003131549.1| PREDICTED: gasdermin-B-like [Sus scrofa].
Length = 413
Score = 499 bits (1285), Expect = e-142
Identities = 255/274 (93%), Positives = 255/274 (93%)
Frame = +1
Query: 115 MPKEFEAATRAVVREVDPRGDWIAVRSLTDADRFHCLYLVKKKKRFFGHQYDKADLSLLD 294
MPKEFEAATRAVVREVDPRGDWIAVRSLTDADRFHCLYLVKKKKRFFGHQYDKADLSLLD
Sbjct: 1 MPKEFEAATRAVVREVDPRGDWIAVRSLTDADRFHCLYLVKKKKRFFGHQYDKADLSLLD 60
Query: 295 ILEVQEGDELFDKLVSGLQDHKAPFRVTDNVDSKGGLTVKLPENMMFEVATYRSRKCNAE 474
ILEVQEGDELFDKLVSGLQDHKAPFRVTDNVDSKGGLTVKLPENMMFEVATYRSRKCNAE
Sbjct: 61 ILEVQEGDELFDKLVSGLQDHKAPFRVTDNVDSKGGLTVKLPENMMFEVATYRSRKCNAE 120
Query: 475 VSGSRTPRQLLAALENTKLKRKLPDSFQSIRAMRXXXXXXXXXXXXXXXXXXXSEQGCVI 654
VSGSRTPRQLLAALENTKLKRKLPDSFQSIRAMR SEQGCVI
Sbjct: 121 VSGSRTPRQLLAALENTKLKRKLPDSFQSIRAMREDLYLVTETLTTTKTETLESEQGCVI 180
Query: 655 QLLVDCLGFRYRRKRQKAVTVPPGTVLGYRLKQLVFPNEESMNIISEKTKSFPHEKDGGA 834
QLLVDCLGFRYRRKRQKAVTVPPGTVLGYRLKQLVFPNEESMNIISEKTKSFPHEKDGGA
Sbjct: 181 QLLVDCLGFRYRRKRQKAVTVPPGTVLGYRLKQLVFPNEESMNIISEKTKSFPHEKDGGA 240
Query: 835 SCLGKSLSLEGSRSMKEKVQDLVRVLQDLTEKEQ 936
SCLGKSLSLEGSRSMKEKVQDLVRVLQDLTEKEQ
Sbjct: 241 SCLGKSLSLEGSRSMKEKVQDLVRVLQDLTEKEQ 274
>ref|XP_003358112.1| PREDICTED: gasdermin-B-like [Sus scrofa].
Length = 221
Score = 159 bits (402), Expect = 2e-39
Identities = 80/80 (100%), Positives = 80/80 (100%)
Frame = +1
Query: 697 RQKAVTVPPGTVLGYRLKQLVFPNEESMNIISEKTKSFPHEKDGGASCLGKSLSLEGSRS 876
RQKAVTVPPGTVLGYRLKQLVFPNEESMNIISEKTKSFPHEKDGGASCLGKSLSLEGSRS
Sbjct: 3 RQKAVTVPPGTVLGYRLKQLVFPNEESMNIISEKTKSFPHEKDGGASCLGKSLSLEGSRS 62
Query: 877 MKEKVQDLVRVLQDLTEKEQ 936
MKEKVQDLVRVLQDLTEKEQ
Sbjct: 63 MKEKVQDLVRVLQDLTEKEQ 82
>ref|XP_003131563.2| PREDICTED: putative LRRC3-like protein ENSP00000367157-like [Sus
scrofa].
Length = 327
Score = 105 bits (262), Expect = 4e-23
Identities = 52/58 (89%), Positives = 54/58 (93%)
Frame = +1
Query: 352 DHKAPFRVTDNVDSKGGLTVKLPENMMFEVATYRSRKCNAEVSGSRTPRQLLAALENT 525
DHKAPFRVTDNVDSKGGLTVKLPENMMFEVATYRSRK + EV G+R PRQLLAALENT
Sbjct: 4 DHKAPFRVTDNVDSKGGLTVKLPENMMFEVATYRSRKHSVEVLGTRIPRQLLAALENT 61
>ref|XP_003358111.1| PREDICTED: putative LRRC3-like protein ENSP00000367157-like [Sus
scrofa].
Length = 327
Score = 105 bits (262), Expect = 4e-23
Identities = 52/58 (89%), Positives = 54/58 (93%)
Frame = +1
Query: 352 DHKAPFRVTDNVDSKGGLTVKLPENMMFEVATYRSRKCNAEVSGSRTPRQLLAALENT 525
DHKAPFRVTDNVDSKGGLTVKLPENMMFEVATYRSRK + EV G+R PRQLLAALENT
Sbjct: 4 DHKAPFRVTDNVDSKGGLTVKLPENMMFEVATYRSRKHSVEVLGTRIPRQLLAALENT 61
>ref|XP_003358113.1| PREDICTED: hypothetical protein LOC100624344 [Sus scrofa].
Length = 588
Score = 103 bits (256), Expect = 2e-22
Identities = 51/57 (89%), Positives = 53/57 (92%)
Frame = +1
Query: 355 HKAPFRVTDNVDSKGGLTVKLPENMMFEVATYRSRKCNAEVSGSRTPRQLLAALENT 525
HKAPFRVTDNVDSKGGLTVKLPENMMFEVATYRSRK + EV G+R PRQLLAALENT
Sbjct: 193 HKAPFRVTDNVDSKGGLTVKLPENMMFEVATYRSRKHSVEVLGTRIPRQLLAALENT 249
>ref|XP_003131539.2| PREDICTED: gasdermin-A-like [Sus scrofa].
Length = 264
Score = 72.0 bits (175), Expect = 4e-13
Identities = 73/267 (27%), Positives = 117/267 (43%), Gaps = 12/267 (4%)
Frame = +1
Query: 127 FEAATRAVVREVDPRGDWIAVRSLTDADRFH--CLYLVKKKKR-FFGHQYDKADLSLLDI 297
FE TRA+ R+++PRGD + SL D RFH CL L K+K F+G +Y + D +LLD+
Sbjct: 4 FENVTRALARQLNPRGDLTPLDSLIDFKRFHPFCLVLRKRKSTLFWGARYIRTDYTLLDV 63
Query: 298 LEVQEGDELFDKLVSGLQDHKAPFRVTDNVDSKGGLTVKLPENMMFEVATYRSRKCNAEV 477
LE G D SG F + +D++ V +P+ + S+ EV
Sbjct: 64 LE--PGSSPSDPTDSG------NFGFKNMLDARVEGEVDVPKTVKVTGTAGLSQNSTLEV 115
Query: 478 SGSRTPRQLLAALENTKLKRKLPDSFQSIRAMRXXXXXXXXXXXXXXXXXXXSEQ----- 642
+T ALE +RKL ++ MR + Q
Sbjct: 116 ---QTLSVAPKALETLHQERKLMAEHPFLKEMRSRGENLYVVMEVVETVQEVTLQRAGKA 172
Query: 643 -GCVIQLLVDCLGFRYRRKRQKAVTVPPGTVLGYRLKQLVFPNEESM---NIISEKTKSF 810
GC LG + ++AVT+P G +L +R++QLV + +I ++ ++F
Sbjct: 173 EGCFSLPFFAPLGLQGSINHKEAVTIPKGCILAFRVRQLVVKGRDEWDIPHICNDNMQTF 232
Query: 811 PHEKDGGASCLGKSLSLEGSRSMKEKV 891
P G + + GSR++++ V
Sbjct: 233 P----PGERPEEEKFTRRGSRALQDTV 255
>ref|XP_003131545.1| PREDICTED: gasdermin-A-like [Sus scrofa].
Length = 446
Score = 70.9 bits (172), Expect = 1e-12
Identities = 68/241 (28%), Positives = 106/241 (43%), Gaps = 12/241 (4%)
Frame = +1
Query: 127 FEAATRAVVREVDPRGDWIAVRSLTDADRFH--CLYLVKKKKR-FFGHQYDKADLSLLDI 297
FE TRA+ R+++PRGD + SL D RFH CL L K+K F+G +Y + D +LLD+
Sbjct: 4 FENVTRALARQLNPRGDLTPLDSLIDFKRFHPFCLVLRKRKSTLFWGARYIRTDYTLLDV 63
Query: 298 LEVQEGDELFDKLVSGLQDHKAPFRVTDNVDSKGGLTVKLPENMMFEVATYRSRKCNAEV 477
LE G D SG F + +D++ V +P+ + S+ EV
Sbjct: 64 LE--PGSSPSDPTDSG------NFGFKNMLDARVEGEVDVPKTVKVTGTAGLSQNSTLEV 115
Query: 478 SGSRTPRQLLAALENTKLKRKLPDSFQSIRAMRXXXXXXXXXXXXXXXXXXXSEQ----- 642
+T ALE +RKL ++ MR + Q
Sbjct: 116 ---QTLSVAPKALETLHQERKLMAEHPFLKEMRSRGENLYVVMEVVETVQEVTLQRAGKA 172
Query: 643 -GCVIQLLVDCLGFRYRRKRQKAVTVPPGTVLGYRLKQLVFPNEESM---NIISEKTKSF 810
GC LG + ++AVT+P G +L +R++QLV + +I ++ ++F
Sbjct: 173 EGCFSLPFFAPLGLQGSINHKEAVTIPKGCILAFRVRQLVVKGRDEWDIPHICNDNMQTF 232
Query: 811 P 813
P
Sbjct: 233 P 233
>ref|XP_003361018.1| PREDICTED: gasdermin-A-like [Sus scrofa].
Length = 530
Score = 49.7 bits (117), Expect = 2e-06
Identities = 67/267 (25%), Positives = 111/267 (41%), Gaps = 22/267 (8%)
Frame = +1
Query: 196 LTDADRFH--CLYLVKKKKR-FFGHQYDKADLSLLDILEVQEGDELFDKLVSGLQDHKAP 366
L D RFH CL L K+K F+G +Y + D +LLD+LE G D SG
Sbjct: 111 LMDFKRFHPFCLVLRKRKSTLFWGARYIRTDYTLLDVLE--PGSSPSDPTDSG------N 162
Query: 367 FRVTDNVDSKGGLTVKLPENMMFEVATYRSRKCNAEVSG-SRTPRQLLAALENTKLKRKL 543
F + +D++ V +P+ + S+ EV S P+ ALE +RKL
Sbjct: 163 FGFKNMLDARVEGEVDVPKTVKVTGTAGLSQNSTLEVQTLSVAPK----ALETLHQERKL 218
Query: 544 PDSFQSIRAMRXXXXXXXXXXXXXXXXXXXSEQ------GCVIQLLVDCLGFRYRRKRQK 705
++ MR + Q GC LG + ++
Sbjct: 219 MAEHPFLKEMRSRGENLYVVMEVVETVQEVTLQRAGKAEGCFSLPFFAPLGLQGSINHKE 278
Query: 706 AVTVPPGTVLGYRLKQLVFPNEESM---NIISEKTKSFPHEKDGGASCLGKSLSLEGS-- 870
AVT+P G +L +R++QLV + +I ++ ++FP GG K ++ S
Sbjct: 279 AVTIPKGCILAFRVRQLVVKGRDEWDIPHICNDNMQTFP---PGGKPEEEKFTLIQASDV 335
Query: 871 -------RSMKEKVQDLVRVLQDLTEK 930
R++KE+V+ + ++ L+ +
Sbjct: 336 GEVHEDFRTLKEEVERETQEVEKLSPR 362
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 23,952,996
Number of extensions: 662194
Number of successful extensions: 2472
Number of sequences better than 1.0e-05: 9
Number of HSP's gapped: 2464
Number of HSP's successfully gapped: 9
Length of query: 312
Length of database: 11,343,932
Length adjustment: 99
Effective length of query: 213
Effective length of database: 8,879,129
Effective search space: 1891254477
Effective search space used: 1891254477
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 33 (17.3 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-004097
(938 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr12 543 e-152
gb|GL893298.2| Sus scrofa unplaced genomic scaffold ChrUScaf1183 519 e-145
>Sscrofa_Chr12
|| Length = 63588571
Score = 543 bits (274), Expect = e-152
Identities = 274/274 (100%)
Strand = Plus / Plus
Query: 79 gaaattggcatcctttccccagttggcccaggcacaatgcccaaggagtttgaggcagcc 138
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 22878459 gaaattggcatcctttccccagttggcccaggcacaatgcccaaggagtttgaggcagcc 22878518
Query: 139 acaagagctgtggtccgagaggtggatcctcggggggattggattgccgtccgaagcctc 198
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 22878519 acaagagctgtggtccgagaggtggatcctcggggggattggattgccgtccgaagcctc 22878578
Query: 199 actgatgctgacagattccactgcctctacctggtgaagaagaagaaacggttctttggc 258
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 22878579 actgatgctgacagattccactgcctctacctggtgaagaagaagaaacggttctttggc 22878638
Query: 259 caccagtacgacaaggcagaccttagcctactggacatcctggaggtgcaggagggtgac 318
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 22878639 caccagtacgacaaggcagaccttagcctactggacatcctggaggtgcaggagggtgac 22878698
Query: 319 gagctctttgataagctggtgtctgggctccaag 352
||||||||||||||||||||||||||||||||||
Sbjct: 22878699 gagctctttgataagctggtgtctgggctccaag 22878732
Score = 347 bits (175), Expect = 7e-93
Identities = 175/175 (100%)
Strand = Plus / Plus
Query: 351 agaccataaggctccgttccgagttacagacaacgtggattcaaagggaggtttgacagt 410
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 22884314 agaccataaggctccgttccgagttacagacaacgtggattcaaagggaggtttgacagt 22884373
Query: 411 gaaattacctgaaaacatgatgtttgaagtggccacctacaggtccaggaagtgcaacgc 470
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 22884374 gaaattacctgaaaacatgatgtttgaagtggccacctacaggtccaggaagtgcaacgc 22884433
Query: 471 tgaggtctcggggtcccggacacccaggcaactcctggctgcccttgagaacacg 525
|||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 22884434 tgaggtctcggggtcccggacacccaggcaactcctggctgcccttgagaacacg 22884488
Score = 341 bits (172), Expect = 4e-91
Identities = 172/172 (100%)
Strand = Plus / Plus
Query: 525 gaagctgaagcgtaaactgcccgattcgttccaatcgatccgagcaatgagagaagacct 584
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 22886799 gaagctgaagcgtaaactgcccgattcgttccaatcgatccgagcaatgagagaagacct 22886858
Query: 585 gtatctggtgacagaaaccctgacgacgacaaagactgaaaccctggaaagcgaacaagg 644
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 22886859 gtatctggtgacagaaaccctgacgacgacaaagactgaaaccctggaaagcgaacaagg 22886918
Query: 645 atgtgttattcagctcctggtggattgtttgggtttccgatacagacgcaag 696
||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 22886919 atgtgttattcagctcctggtggattgtttgggtttccgatacagacgcaag 22886970
Score = 283 bits (143), Expect = 8e-74
Identities = 167/175 (95%)
Strand = Plus / Minus
Query: 351 agaccataaggctccgttccgagttacagacaacgtggattcaaagggaggtttgacagt 410
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 22867301 agaccataaggctccgttccgagttacagacaacgtggattcaaagggaggtttgacagt 22867242
Query: 411 gaaattacctgaaaacatgatgtttgaagtggccacctacaggtccaggaagtgcaacgc 470
|||||||||||||||||||||||||||||||||||||||||||||||||||| || ||
Sbjct: 22867241 gaaattacctgaaaacatgatgtttgaagtggccacctacaggtccaggaagcacagcgt 22867182
Query: 471 tgaggtctcggggtcccggacacccaggcaactcctggctgcccttgagaacacg 525
||||||| |||| |||||| ||||||||||||||||||||||||||||||||||
Sbjct: 22867181 cgaggtcttggggacccggatacccaggcaactcctggctgcccttgagaacacg 22867127
Score = 182 bits (92), Expect = 2e-43
Identities = 95/96 (98%)
Strand = Plus / Plus
Query: 843 agggaagtccttgagtttggagggttccagaagcatgaaggaaaaggtgcaggacctggt 902
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 22891003 agggaagtccttgagtttggagggttccagaagcatgaaggagaaggtgcaggacctggt 22891062
Query: 903 gagggtcctccaggatctgacggagaaggagcaaaa 938
||||||||||||||||||||||||||||||||||||
Sbjct: 22891063 gagggtcctccaggatctgacggagaaggagcaaaa 22891098
Score = 172 bits (87), Expect = 2e-40
Identities = 87/87 (100%)
Strand = Plus / Plus
Query: 695 agcgtcaaaaggcggtgaccgtcccccctgggacagtcctgggctatcgcctaaagcagc 754
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 22888101 agcgtcaaaaggcggtgaccgtcccccctgggacagtcctgggctatcgcctaaagcagc 22888160
Query: 755 tcgtcttccccaacgaggagagcatga 781
|||||||||||||||||||||||||||
Sbjct: 22888161 tcgtcttccccaacgaggagagcatga 22888187
Score = 157 bits (79), Expect = 1e-35
Identities = 79/79 (100%)
Strand = Plus / Plus
Query: 1 ttatagcttcctgagacagtggccaggaactgtgcagagagatctgacacagaggggatt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 22876974 ttatagcttcctgagacagtggccaggaactgtgcagagagatctgacacagaggggatt 22877033
Query: 61 cggacaacctccagttttg 79
|||||||||||||||||||
Sbjct: 22877034 cggacaacctccagttttg 22877052
Score = 71.9 bits (36), Expect = 6e-10
Identities = 36/36 (100%)
Strand = Plus / Plus
Query: 782 atattatttctgaaaaaacaaaatcctttccacacg 817
||||||||||||||||||||||||||||||||||||
Sbjct: 22888560 atattatttctgaaaaaacaaaatcctttccacacg 22888595
Score = 58.0 bits (29), Expect = 9e-06
Identities = 29/29 (100%)
Strand = Plus / Plus
Query: 817 gagaaagatggtggtgcatcttgcttagg 845
|||||||||||||||||||||||||||||
Sbjct: 22890218 gagaaagatggtggtgcatcttgcttagg 22890246
>gb|GL893298.2| Sus scrofa unplaced genomic scaffold ChrUScaf1183
Length = 88797
Score = 519 bits (262), Expect = e-145
Identities = 271/274 (98%)
Strand = Plus / Minus
Query: 79 gaaattggcatcctttccccagttggcccaggcacaatgcccaaggagtttgaggcagcc 138
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5991 gaaattggcatcctttccccagttggcccaggcacaatgcccaaggagtttgaggcagcc 5932
Query: 139 acaagagctgtggtccgagaggtggatcctcggggggattggattgccgtccgaagcctc 198
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 5931 acaagagctgtggtccgagaggtggatcctcagggggattggattgccgtccgaagcctc 5872
Query: 199 actgatgctgacagattccactgcctctacctggtgaagaagaagaaacggttctttggc 258
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5871 actgatgctgacagattccactgcctctacctggtgaagaagaagaaacggttctttggc 5812
Query: 259 caccagtacgacaaggcagaccttagcctactggacatcctggaggtgcaggagggtgac 318
|||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||
Sbjct: 5811 caccagtacgacaaggcagaccttagactagtggacatcctggaggtgcaggagggtgac 5752
Query: 319 gagctctttgataagctggtgtctgggctccaag 352
||||||||||||||||||||||||||||||||||
Sbjct: 5751 gagctctttgataagctggtgtctgggctccaag 5718
Score = 341 bits (172), Expect = 4e-91
Identities = 172/172 (100%)
Strand = Plus / Minus
Query: 525 gaagctgaagcgtaaactgcccgattcgttccaatcgatccgagcaatgagagaagacct 584
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 519 gaagctgaagcgtaaactgcccgattcgttccaatcgatccgagcaatgagagaagacct 460
Query: 585 gtatctggtgacagaaaccctgacgacgacaaagactgaaaccctggaaagcgaacaagg 644
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 459 gtatctggtgacagaaaccctgacgacgacaaagactgaaaccctggaaagcgaacaagg 400
Query: 645 atgtgttattcagctcctggtggattgtttgggtttccgatacagacgcaag 696
||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 399 atgtgttattcagctcctggtggattgtttgggtttccgatacagacgcaag 348
Score = 157 bits (79), Expect = 1e-35
Identities = 79/79 (100%)
Strand = Plus / Minus
Query: 1 ttatagcttcctgagacagtggccaggaactgtgcagagagatctgacacagaggggatt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7325 ttatagcttcctgagacagtggccaggaactgtgcagagagatctgacacagaggggatt 7266
Query: 61 cggacaacctccagttttg 79
|||||||||||||||||||
Sbjct: 7265 cggacaacctccagttttg 7247
Score = 65.9 bits (33), Expect = 4e-08
Identities = 42/45 (93%)
Strand = Plus / Plus
Query: 472 gaggtctcggggtcccggacacccaggcaactcctggctgccctt 516
||||||| |||| |||||| |||||||||||||||||||||||||
Sbjct: 17073 gaggtcttggggacccggatacccaggcaactcctggctgccctt 17117
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 27,121,741
Number of extensions: 147
Number of successful extensions: 147
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 147
Number of HSP's successfully gapped: 13
Length of query: 938
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 917
Effective length of database: 2,808,413,156
Effective search space: 2575314864052
Effective search space used: 2575314864052
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 29 (58.0 bits)