Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-004104
(1087 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001019668.2| ankyrin repeat and zinc finger domain-contai... 426 e-119
>ref|NP_001019668.2| ankyrin repeat and zinc finger domain-containing protein 1 [Bos
taurus].
Length = 728
Score = 426 bits (1096), Expect = e-119
Identities = 221/312 (70%), Positives = 235/312 (75%), Gaps = 8/312 (2%)
Frame = +3
Query: 171 LFDLSADAPVLQGLRLVSHAPGEVLAQTLRTSCPGSGEKKSPERKPLQCPLDTSEKLCCS 350
LFDLS DAPVLQGLRLVSH P E LAQ+L+TSCPGS E+ SPER+P Q LD SEKL CS
Sbjct: 16 LFDLSTDAPVLQGLRLVSHFPEEALAQSLQTSCPGSEEQISPERRPFQGALDISEKLFCS 75
Query: 351 TCDQTFQNHQEQREHYKLDWHRFNLKQRLKDKPLLSALEFEQHXXXXXXXXXXXXXXXXX 530
TCDQ FQNHQEQREHYKLDWHRFNLKQRLKDKPLLSAL+FE+
Sbjct: 76 TCDQVFQNHQEQREHYKLDWHRFNLKQRLKDKPLLSALDFEKQSSTGDLSSISGSEDSDS 135
Query: 531 XXXXXLQIQDEERAEAEKPNRPRGFHPHRVLFQNAQGQFLDAYRCVLGPRQ--------V 686
LQI DEERA+ EKP RP+GFHPHRVLFQNAQGQFL AYRCVLGPR V
Sbjct: 136 DSEEDLQILDEERADLEKPTRPQGFHPHRVLFQNAQGQFLYAYRCVLGPRHASASTYCVV 195
Query: 687 XXXXXXXXXQNLQSGGPRYCVVLMAAAGHFAGAVFQGREVLTHKTFHRYTVRAKRGTAQG 866
QNLQ+GGPR CVVLMAAAGHFAGA+FQGREVLTHKTFHRYTVRAKRGTAQG
Sbjct: 196 PLEESELLLQNLQTGGPRDCVVLMAAAGHFAGAIFQGREVLTHKTFHRYTVRAKRGTAQG 255
Query: 867 LRDARGAAPRSAGANLRRXHEATLYKDVRDLLAGPDWTKALEEAGTXMLRAPRSARPCSF 1046
LRDARGAA SAGA+LRR +EA LYK+VRDLLAGP W KALEEAGT +LRAPRS R F
Sbjct: 256 LRDARGAAAHSAGASLRRYNEAALYKEVRDLLAGPAWAKALEEAGTILLRAPRSGRSLFF 315
Query: 1047 GVVRLPCSGGTP 1082
G P G P
Sbjct: 316 GGREAPLRRGDP 327
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 43,181,885
Number of extensions: 1273042
Number of successful extensions: 6311
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 6300
Number of HSP's successfully gapped: 1
Length of query: 362
Length of database: 17,681,374
Length adjustment: 103
Effective length of query: 259
Effective length of database: 14,273,310
Effective search space: 3696787290
Effective search space used: 3696787290
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-004104
(1087 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_536075.2| PREDICTED: similar to K06H7.3 isoform 1 [Canis ... 409 e-114
Alignment gi|XP_863662.1| PREDICTED: similar to K06H7.3 isoform 3 [Canis ... 189 5e-48
>ref|XP_536075.2| PREDICTED: similar to K06H7.3 isoform 1 [Canis familiaris].
Length = 721
Score = 409 bits (1051), Expect = e-114
Identities = 215/304 (70%), Positives = 227/304 (74%)
Frame = +3
Query: 171 LFDLSADAPVLQGLRLVSHAPGEVLAQTLRTSCPGSGEKKSPERKPLQCPLDTSEKLCCS 350
LFDL+ADA V QGL LVSH AQ LRTSCPGS SPERK Q LD SEKL CS
Sbjct: 16 LFDLNADARVCQGLSLVSHPSEAAPAQALRTSCPGSA---SPERKLPQGLLDISEKLFCS 72
Query: 351 TCDQTFQNHQEQREHYKLDWHRFNLKQRLKDKPLLSALEFEQHXXXXXXXXXXXXXXXXX 530
TCDQTFQNHQEQREHYKLDWHRFNLKQRLKDKP LSAL+FE+
Sbjct: 73 TCDQTFQNHQEQREHYKLDWHRFNLKQRLKDKPFLSALDFEKQSSTGDLSSISGSEDSES 132
Query: 531 XXXXXLQIQDEERAEAEKPNRPRGFHPHRVLFQNAQGQFLDAYRCVLGPRQVXXXXXXXX 710
LQI DEERAE EKP+RP+GFHPHRVLFQNAQGQFL AYRCVLGPRQV
Sbjct: 133 ASEEDLQIPDEERAEFEKPSRPQGFHPHRVLFQNAQGQFLYAYRCVLGPRQVPPEEPELL 192
Query: 711 XQNLQSGGPRYCVVLMAAAGHFAGAVFQGREVLTHKTFHRYTVRAKRGTAQGLRDARGAA 890
QNLQ+GGPR VVLMAAAGHFAGA+FQGR+V+THKTFHRYTVRAKRGTAQG+RDARG A
Sbjct: 193 LQNLQNGGPRSYVVLMAAAGHFAGAIFQGRDVVTHKTFHRYTVRAKRGTAQGIRDARGGA 252
Query: 891 PRSAGANLRRXHEATLYKDVRDLLAGPDWTKALEEAGTXMLRAPRSARPCSFGVVRLPCS 1070
RSAGANLRR +EATLYKDVRDLLAGP W KALEEAGT +LRAPRS R F P
Sbjct: 253 SRSAGANLRRYNEATLYKDVRDLLAGPGWAKALEEAGTILLRAPRSGRSLFFRGHGAPLQ 312
Query: 1071 GGTP 1082
G P
Sbjct: 313 RGDP 316
>ref|XP_863662.1| PREDICTED: similar to K06H7.3 isoform 3 [Canis familiaris].
Length = 622
Score = 189 bits (479), Expect = 5e-48
Identities = 95/123 (77%), Positives = 102/123 (82%)
Frame = +3
Query: 714 QNLQSGGPRYCVVLMAAAGHFAGAVFQGREVLTHKTFHRYTVRAKRGTAQGLRDARGAAP 893
QNLQ+GGPR VVLMAAAGHFAGA+FQGR+V+THKTFHRYTVRAKRGTAQG+RDARG A
Sbjct: 95 QNLQNGGPRSYVVLMAAAGHFAGAIFQGRDVVTHKTFHRYTVRAKRGTAQGIRDARGGAS 154
Query: 894 RSAGANLRRXHEATLYKDVRDLLAGPDWTKALEEAGTXMLRAPRSARPCSFGVVRLPCSG 1073
RSAGANLRR +EATLYKDVRDLLAGP W KALEEAGT +LRAPRS R F P
Sbjct: 155 RSAGANLRRYNEATLYKDVRDLLAGPGWAKALEEAGTILLRAPRSGRSLFFRGHGAPLQR 214
Query: 1074 GTP 1082
G P
Sbjct: 215 GDP 217
Score = 92.4 bits (228), Expect = 7e-19
Identities = 51/72 (70%), Positives = 52/72 (72%)
Frame = +3
Query: 171 LFDLSADAPVLQGLRLVSHAPGEVLAQTLRTSCPGSGEKKSPERKPLQCPLDTSEKLCCS 350
LFDL+ADA V QGL LVSH AQ LRTSCPGS SPERK Q LD SEKL CS
Sbjct: 16 LFDLNADARVCQGLSLVSHPSEAAPAQALRTSCPGSA---SPERKLPQGLLDISEKLFCS 72
Query: 351 TCDQTFQNHQEQ 386
TCDQTFQNHQEQ
Sbjct: 73 TCDQTFQNHQEQ 84
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 44,871,151
Number of extensions: 1302417
Number of successful extensions: 6573
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 6552
Number of HSP's successfully gapped: 3
Length of query: 362
Length of database: 18,874,504
Length adjustment: 104
Effective length of query: 258
Effective length of database: 15,407,560
Effective search space: 3975150480
Effective search space used: 3975150480
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-004104
(1087 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001035869.1| ankyrin repeat and zinc finger domain-contai... 423 e-118
Alignment gi|NP_060559.2| ankyrin repeat and zinc finger domain-containin... 423 e-118
>ref|NP_001035869.1| ankyrin repeat and zinc finger domain-containing protein 1 [Homo
sapiens].
Length = 726
Score = 423 bits (1088), Expect = e-118
Identities = 218/304 (71%), Positives = 230/304 (75%)
Frame = +3
Query: 171 LFDLSADAPVLQGLRLVSHAPGEVLAQTLRTSCPGSGEKKSPERKPLQCPLDTSEKLCCS 350
LFDLSADAPV QGL LVSHAPGE LA+ RTSC GSGE++SPERK LQ P+D SEKL CS
Sbjct: 16 LFDLSADAPVFQGLSLVSHAPGEALARAPRTSCSGSGERESPERKLLQGPMDISEKLFCS 75
Query: 351 TCDQTFQNHQEQREHYKLDWHRFNLKQRLKDKPLLSALEFEQHXXXXXXXXXXXXXXXXX 530
TCDQTFQNHQEQREHYKLDWHRFNLKQRLKDKPLLSAL+FE+
Sbjct: 76 TCDQTFQNHQEQREHYKLDWHRFNLKQRLKDKPLLSALDFEKQSSTGDLSSISGSEDSDS 135
Query: 531 XXXXXLQIQDEERAEAEKPNRPRGFHPHRVLFQNAQGQFLDAYRCVLGPRQVXXXXXXXX 710
LQ D ERA EK +RP GF+PHRVLFQNAQGQFL AYRCVLGP Q
Sbjct: 136 ASEEDLQTLDRERATFEKLSRPPGFYPHRVLFQNAQGQFLYAYRCVLGPHQDPPEEAELL 195
Query: 711 XQNLQSGGPRYCVVLMAAAGHFAGAVFQGREVLTHKTFHRYTVRAKRGTAQGLRDARGAA 890
QNLQS GPR CVVLMAAAGHFAGA+FQGREV+THKTFHRYTVRAKRGTAQGLRDARG
Sbjct: 196 LQNLQSRGPRDCVVLMAAAGHFAGAIFQGREVVTHKTFHRYTVRAKRGTAQGLRDARGGP 255
Query: 891 PRSAGANLRRXHEATLYKDVRDLLAGPDWTKALEEAGTXMLRAPRSARPCSFGVVRLPCS 1070
SAGANLRR +EATLYKDVRDLLAGP W KALEEAGT +LRAPRS R FG P
Sbjct: 256 SHSAGANLRRYNEATLYKDVRDLLAGPSWAKALEEAGTILLRAPRSGRSLFFGGKGAPLQ 315
Query: 1071 GGTP 1082
G P
Sbjct: 316 RGDP 319
>ref|NP_060559.2| ankyrin repeat and zinc finger domain-containing protein 1 [Homo
sapiens].
Length = 726
Score = 423 bits (1088), Expect = e-118
Identities = 218/304 (71%), Positives = 230/304 (75%)
Frame = +3
Query: 171 LFDLSADAPVLQGLRLVSHAPGEVLAQTLRTSCPGSGEKKSPERKPLQCPLDTSEKLCCS 350
LFDLSADAPV QGL LVSHAPGE LA+ RTSC GSGE++SPERK LQ P+D SEKL CS
Sbjct: 16 LFDLSADAPVFQGLSLVSHAPGEALARAPRTSCSGSGERESPERKLLQGPMDISEKLFCS 75
Query: 351 TCDQTFQNHQEQREHYKLDWHRFNLKQRLKDKPLLSALEFEQHXXXXXXXXXXXXXXXXX 530
TCDQTFQNHQEQREHYKLDWHRFNLKQRLKDKPLLSAL+FE+
Sbjct: 76 TCDQTFQNHQEQREHYKLDWHRFNLKQRLKDKPLLSALDFEKQSSTGDLSSISGSEDSDS 135
Query: 531 XXXXXLQIQDEERAEAEKPNRPRGFHPHRVLFQNAQGQFLDAYRCVLGPRQVXXXXXXXX 710
LQ D ERA EK +RP GF+PHRVLFQNAQGQFL AYRCVLGP Q
Sbjct: 136 ASEEDLQTLDRERATFEKLSRPPGFYPHRVLFQNAQGQFLYAYRCVLGPHQDPPEEAELL 195
Query: 711 XQNLQSGGPRYCVVLMAAAGHFAGAVFQGREVLTHKTFHRYTVRAKRGTAQGLRDARGAA 890
QNLQS GPR CVVLMAAAGHFAGA+FQGREV+THKTFHRYTVRAKRGTAQGLRDARG
Sbjct: 196 LQNLQSRGPRDCVVLMAAAGHFAGAIFQGREVVTHKTFHRYTVRAKRGTAQGLRDARGGP 255
Query: 891 PRSAGANLRRXHEATLYKDVRDLLAGPDWTKALEEAGTXMLRAPRSARPCSFGVVRLPCS 1070
SAGANLRR +EATLYKDVRDLLAGP W KALEEAGT +LRAPRS R FG P
Sbjct: 256 SHSAGANLRRYNEATLYKDVRDLLAGPSWAKALEEAGTILLRAPRSGRSLFFGGKGAPLQ 315
Query: 1071 GGTP 1082
G P
Sbjct: 316 RGDP 319
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 43,880,451
Number of extensions: 1268478
Number of successful extensions: 6293
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 6275
Number of HSP's successfully gapped: 2
Length of query: 362
Length of database: 18,297,164
Length adjustment: 104
Effective length of query: 258
Effective length of database: 14,868,908
Effective search space: 3836178264
Effective search space used: 3836178264
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-004104
(1087 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_080463.3| ankyrin repeat and zinc finger domain-containin... 369 e-102
>ref|NP_080463.3| ankyrin repeat and zinc finger domain-containing protein 1 [Mus
musculus].
Length = 748
Score = 369 bits (946), Expect = e-102
Identities = 192/304 (63%), Positives = 213/304 (70%)
Frame = +3
Query: 171 LFDLSADAPVLQGLRLVSHAPGEVLAQTLRTSCPGSGEKKSPERKPLQCPLDTSEKLCCS 350
L L+ +AP+++GL LVS APGE LA RTSCPG + P L+ SEKL CS
Sbjct: 42 LLSLNGEAPLIRGLSLVSQAPGEALAWAPRTSCPGENTSSGGKVSPYS--LEISEKLFCS 99
Query: 351 TCDQTFQNHQEQREHYKLDWHRFNLKQRLKDKPLLSALEFEQHXXXXXXXXXXXXXXXXX 530
CDQ FQNHQEQREHYKLDWHRFNLKQRLK+KPLLSA +FEQ
Sbjct: 100 ACDQIFQNHQEQREHYKLDWHRFNLKQRLKNKPLLSASDFEQQSSTGDLSSISGSDDTDS 159
Query: 531 XXXXXLQIQDEERAEAEKPNRPRGFHPHRVLFQNAQGQFLDAYRCVLGPRQVXXXXXXXX 710
L DE RAE+EKPNRP GF+PHRVLF+NAQGQFL AYRCVLGP Q+
Sbjct: 160 SSEEDLLPLDEGRAESEKPNRPPGFYPHRVLFKNAQGQFLYAYRCVLGPHQIPPEKAELL 219
Query: 711 XQNLQSGGPRYCVVLMAAAGHFAGAVFQGREVLTHKTFHRYTVRAKRGTAQGLRDARGAA 890
QNLQ+GGPRY VVLMAAAGHFAGA+FQGREV+ HKTFHRYTVRAKRGTAQGL+DA G A
Sbjct: 220 LQNLQNGGPRYYVVLMAAAGHFAGAIFQGREVVAHKTFHRYTVRAKRGTAQGLQDAHGRA 279
Query: 891 PRSAGANLRRXHEATLYKDVRDLLAGPDWTKALEEAGTXMLRAPRSARPCSFGVVRLPCS 1070
RSAGANLRR +EA LYKDVR+LLAGP W+KAL EA T + RAPRS R FG P
Sbjct: 280 SRSAGANLRRYNEAMLYKDVRNLLAGPIWSKALGEAETVLFRAPRSGRSLFFGGQGAPLQ 339
Query: 1071 GGTP 1082
P
Sbjct: 340 RDDP 343
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 36,935,452
Number of extensions: 1047612
Number of successful extensions: 5130
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 5114
Number of HSP's successfully gapped: 1
Length of query: 362
Length of database: 15,617,559
Length adjustment: 103
Effective length of query: 259
Effective length of database: 12,523,851
Effective search space: 3243677409
Effective search space used: 3243677409
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-004104
(1087 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_001925674.2| PREDICTED: ankyrin repeat and zinc finger do... 515 e-146
>ref|XP_001925674.2| PREDICTED: ankyrin repeat and zinc finger domain-containing protein 1
[Sus scrofa].
Length = 718
Score = 515 bits (1326), Expect = e-146
Identities = 258/304 (84%), Positives = 259/304 (85%)
Frame = +3
Query: 171 LFDLSADAPVLQGLRLVSHAPGEVLAQTLRTSCPGSGEKKSPERKPLQCPLDTSEKLCCS 350
LFDLSADAPVLQGLRLVSHAPGEVLAQTLRTSCPGSGEKKSPERKPLQCPLDTSEKLCCS
Sbjct: 16 LFDLSADAPVLQGLRLVSHAPGEVLAQTLRTSCPGSGEKKSPERKPLQCPLDTSEKLCCS 75
Query: 351 TCDQTFQNHQEQREHYKLDWHRFNLKQRLKDKPLLSALEFEQHXXXXXXXXXXXXXXXXX 530
TCDQTFQNHQEQREHYKLDWHRFNLKQRLKDKPLLSALEFEQH
Sbjct: 76 TCDQTFQNHQEQREHYKLDWHRFNLKQRLKDKPLLSALEFEQHSSTGDLSSISGSEDSDS 135
Query: 531 XXXXXLQIQDEERAEAEKPNRPRGFHPHRVLFQNAQGQFLDAYRCVLGPRQVXXXXXXXX 710
LQIQDEERAEAEKPNRPRGFHPHRVLFQNAQGQFLDAYRCVLGPRQV
Sbjct: 136 ASEEDLQIQDEERAEAEKPNRPRGFHPHRVLFQNAQGQFLDAYRCVLGPRQVPPEEPELL 195
Query: 711 XQNLQSGGPRYCVVLMAAAGHFAGAVFQGREVLTHKTFHRYTVRAKRGTAQGLRDARGAA 890
QNLQSGGPRYCVVLMAAAGHFAGAVFQGREVLTHKTFHRYTVRAKRGTAQGLRDARGAA
Sbjct: 196 LQNLQSGGPRYCVVLMAAAGHFAGAVFQGREVLTHKTFHRYTVRAKRGTAQGLRDARGAA 255
Query: 891 PRSAGANLRRXHEATLYKDVRDLLAGPDWTKALEEAGTXMLRAPRSARPCSFGVVRLPCS 1070
PRSAGANLRR +EATLYKDVRDLLAGPDWTKALEEAGT MLRAPRS R FG P
Sbjct: 256 PRSAGANLRRYNEATLYKDVRDLLAGPDWTKALEEAGTIMLRAPRSGRALFFGGREAPLQ 315
Query: 1071 GGTP 1082
G P
Sbjct: 316 RGDP 319
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 27,871,289
Number of extensions: 820961
Number of successful extensions: 4020
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 4012
Number of HSP's successfully gapped: 1
Length of query: 362
Length of database: 11,343,932
Length adjustment: 100
Effective length of query: 262
Effective length of database: 8,854,232
Effective search space: 2319808784
Effective search space used: 2319808784
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-004104
(1087 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr15 392 e-106
>Sscrofa_Chr15
|| Length = 157681621
Score = 392 bits (198), Expect = e-106
Identities = 198/198 (100%)
Strand = Plus / Plus
Query: 487 caggagatctttccagcatctcaggatcggaagactcagactcagccagcgaggaggatt 546
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 134304183 caggagatctttccagcatctcaggatcggaagactcagactcagccagcgaggaggatt 134304242
Query: 547 tgcagatacaggatgaggagagagctgaggctgagaagcctaaccgaccccgaggcttcc 606
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 134304243 tgcagatacaggatgaggagagagctgaggctgagaagcctaaccgaccccgaggcttcc 134304302
Query: 607 atccccatcgtgttcttttccaaaacgcccagggccagtttcttgatgcctatcgctgtg 666
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 134304303 atccccatcgtgttcttttccaaaacgcccagggccagtttcttgatgcctatcgctgtg 134304362
Query: 667 tcctaggcccccgccagg 684
||||||||||||||||||
Sbjct: 134304363 tcctaggcccccgccagg 134304380
Score = 353 bits (178), Expect = 1e-94
Identities = 181/182 (99%)
Strand = Plus / Plus
Query: 94 aggagctgcttctaagtaatctctgctcagccatgtcgccggctccagctgcagctcagg 153
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 134301041 aggagctgcttctaagtaatctctgctcagccatgtcgccggctccagctgcagctcagg 134301100
Query: 154 cttctgtgtcgatctccctttttgacctcagcgcggatgctccagtccttcagggcctgc 213
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 134301101 cttctgtgtcgatctccctttttgacctcagcgcggatgctccagtccttcagggcctgc 134301160
Query: 214 gcctggtgagccacgctcctggagaggttctggcccagactctgcggacttcctgtccag 273
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 134301161 gcctggtgagccacgctcctggggaggttctggcccagactctgcggacttcctgtccag 134301220
Query: 274 gt 275
||
Sbjct: 134301221 gt 134301222
Score = 283 bits (143), Expect = 1e-73
Identities = 148/150 (98%)
Strand = Plus / Plus
Query: 796 gacgagaagtgttgacacacaaaacctttcaccgctacacagtgcgggccaagcggggca 855
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 134305205 gacgagaagtgttgacacacaaaacctttcaccgctacacagtgcgggccaagcggggca 134305264
Query: 856 cagcccaggggcttcgggacgcccggggtgcagctcctcgctctgctggagccaacctga 915
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 134305265 cagcccaggggcttcgggacgcccggggtgcagctcctcgctctgctggagccaacctga 134305324
Query: 916 ggcgctancatgaagccacgctatataagg 945
||||||| |||||||||||||||||||||
Sbjct: 134305325 ggcgctacaatgaagccacgctatataagg 134305354
Score = 232 bits (117), Expect = 3e-58
Identities = 117/117 (100%)
Strand = Plus / Plus
Query: 680 ccaggtgcctccagaagaaccagaactgctgctacagaacctgcagagtggagggcccag 739
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 134304996 ccaggtgcctccagaagaaccagaactgctgctacagaacctgcagagtggagggcccag 134305055
Query: 740 atattgcgtggtgctcatggccgctgctggccactttgctggtgccgttttccaagg 796
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 134305056 atattgcgtggtgctcatggccgctgctggccactttgctggtgccgttttccaagg 134305112
Score = 228 bits (115), Expect = 5e-57
Identities = 139/146 (95%), Gaps = 1/146 (0%)
Strand = Plus / Plus
Query: 943 aggatgttcgtgacctgctggcaggaccagactggactaaagcactggaggaggccggga 1002
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 134305633 aggatgttcgtgacctgctggcaggaccagactggactaaggcactggaggaggccggga 134305692
Query: 1003 cgatnatgctgcgtgccccccgctct-gcccggccttgttcttttggagtcgtgaggctc 1061
|||| ||||||||||||||||||||| ||| ||||||||||||| | ||||||||||||
Sbjct: 134305693 cgataatgctgcgtgccccccgctctggccgggccttgttctttggaggtcgtgaggctc 134305752
Query: 1062 ccctgcagcggggggacccccgactt 1087
||||||||||||||||||||||||||
Sbjct: 134305753 ccctgcagcggggggacccccgactt 134305778
Score = 210 bits (106), Expect = 1e-51
Identities = 106/106 (100%)
Strand = Plus / Plus
Query: 385 agagggagcattataagcttgactggcaccggtttaacctaaagcagcgtcttaaggata 444
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 134303963 agagggagcattataagcttgactggcaccggtttaacctaaagcagcgtcttaaggata 134304022
Query: 445 agcctctcctgtctgccttggaatttgaacagcacagctccacagg 490
||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 134304023 agcctctcctgtctgccttggaatttgaacagcacagctccacagg 134304068
Score = 190 bits (96), Expect = 1e-45
Identities = 96/96 (100%)
Strand = Plus / Plus
Query: 1 gtgacgagattgttgtggtgttgcagaaatccgggtttcgaactgtagacgtccatgcgg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 134300681 gtgacgagattgttgtggtgttgcagaaatccgggtttcgaactgtagacgtccatgcgg 134300740
Query: 61 ctcggctcccggggacctttgctgcagcttctgagg 96
||||||||||||||||||||||||||||||||||||
Sbjct: 134300741 ctcggctcccggggacctttgctgcagcttctgagg 134300776
Score = 188 bits (95), Expect = 4e-45
Identities = 95/95 (100%)
Strand = Plus / Plus
Query: 292 gcccagaaagaaaaccactccagtgtcctctggatacttcagagaagttgtgttgttcaa 351
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 134303230 gcccagaaagaaaaccactccagtgtcctctggatacttcagagaagttgtgttgttcaa 134303289
Query: 352 cctgtgaccagaccttccagaaccaccaggagcag 386
|||||||||||||||||||||||||||||||||||
Sbjct: 134303290 cctgtgaccagaccttccagaaccaccaggagcag 134303324
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 29,610,584
Number of extensions: 156
Number of successful extensions: 156
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 155
Number of HSP's successfully gapped: 8
Length of query: 1087
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1066
Effective length of database: 2,808,413,156
Effective search space: 2993768424296
Effective search space used: 2993768424296
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)