Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-004106
(1097 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001068817.1| N-chimaerin isoform 1 [Bos taurus]. 662 0.0
Alignment gi|NP_001106718.1| N-chimaerin isoform 2 [Bos taurus]. 551 e-157
Alignment gi|NP_001039428.1| beta-chimaerin [Bos taurus]. 481 e-136
Alignment gi|XP_002696764.1| PREDICTED: chimerin (chimaerin) 1-like [Bos ... 136 4e-32
Alignment gi|XP_001788731.1| PREDICTED: chimerin (chimaerin) 1-like [Bos ... 136 4e-32
Alignment gi|XP_599652.3| PREDICTED: myosin IXA, partial [Bos taurus]. 133 3e-31
Alignment gi|NP_001098473.1| rho GTPase-activating protein 15 [Bos taurus]. 132 5e-31
Alignment gi|NP_001070298.1| rho GTPase-activating protein 10 [Bos taurus]. 131 1e-30
Alignment gi|NP_001179327.1| glucocorticoid receptor DNA-binding factor 1... 128 8e-30
Alignment gi|XP_002695993.1| PREDICTED: Rho GTPase-activating protein 23-... 128 8e-30
>ref|NP_001068817.1| N-chimaerin isoform 1 [Bos taurus].
Length = 334
Score = 662 bits (1708), Expect = 0.0
Identities = 326/334 (97%), Positives = 327/334 (97%)
Frame = +3
Query: 96 MPSKESWSGRKTNRAPVHKSKQEGRQQDLLIAALGMKLGSQKSSVTIWQPLKLFAYSQLT 275
MPSKESWSGRKTNRA VHKSKQEGRQQDLLIAALGMKLGSQKSSVTIWQPLKLFAYSQLT
Sbjct: 1 MPSKESWSGRKTNRATVHKSKQEGRQQDLLIAALGMKLGSQKSSVTIWQPLKLFAYSQLT 60
Query: 276 SLVRRATLKENEQIPKYEKVHNFKVHTFRGPHWCEYCANFMWGLIAQGVKCADCGLNVHK 455
SLVRRATLKENEQIPKYEKVHNFKVHTFRGPHWCEYCANFMWGLIAQGVKCADCGLNVHK
Sbjct: 61 SLVRRATLKENEQIPKYEKVHNFKVHTFRGPHWCEYCANFMWGLIAQGVKCADCGLNVHK 120
Query: 456 QCSKMVPNDCKPDLKHVKKVYSCDLTTLVKAHITKRPMVVDMCIREIESRGLNSEGLYRV 635
QCSKMVPNDCKPDLKHVKKVYSCDLTTLVKA TKRPMVVDMCIREIE+RGLNSEGLYRV
Sbjct: 121 QCSKMVPNDCKPDLKHVKKVYSCDLTTLVKARTTKRPMVVDMCIREIEARGLNSEGLYRV 180
Query: 636 SGFSDLIEDVKMAFDRDGEKADISVNMYEDINIITGALKLYFRDLPIPLITYDAYPKFIE 815
SGFSDLIEDVKMAFDRDGEKADISVNMYEDINIITGALKLYFRDLPIPLITYDAYPKFIE
Sbjct: 181 SGFSDLIEDVKMAFDRDGEKADISVNMYEDINIITGALKLYFRDLPIPLITYDAYPKFIE 240
Query: 816 SAKIMDPDEQLETLHEALKLLPPAHCETLRYLMAHLKRVTLHEKENLMNAENLGIVFGPT 995
SAKIMDPDEQLETLHEALKLLPPAHCETLRYLMAHLKRVTLHEKENLMNAENLGIVFGPT
Sbjct: 241 SAKIMDPDEQLETLHEALKLLPPAHCETLRYLMAHLKRVTLHEKENLMNAENLGIVFGPT 300
Query: 996 LMRSPELDAMAALNDIRY*RLVVELLIKNETFYF 1097
LMRSPELDAMAALNDIRY RLVVELLIKNE F
Sbjct: 301 LMRSPELDAMAALNDIRYQRLVVELLIKNEDILF 334
>ref|NP_001106718.1| N-chimaerin isoform 2 [Bos taurus].
Length = 459
Score = 551 bits (1419), Expect = e-157
Identities = 269/277 (97%), Positives = 271/277 (97%)
Frame = +3
Query: 267 QLTSLVRRATLKENEQIPKYEKVHNFKVHTFRGPHWCEYCANFMWGLIAQGVKCADCGLN 446
+LTSLVRRATLKENEQIPKYEKVHNFKVHTFRGPHWCEYCANFMWGLIAQGVKCADCGLN
Sbjct: 183 RLTSLVRRATLKENEQIPKYEKVHNFKVHTFRGPHWCEYCANFMWGLIAQGVKCADCGLN 242
Query: 447 VHKQCSKMVPNDCKPDLKHVKKVYSCDLTTLVKAHITKRPMVVDMCIREIESRGLNSEGL 626
VHKQCSKMVPNDCKPDLKHVKKVYSCDLTTLVKA TKRPMVVDMCIREIE+RGLNSEGL
Sbjct: 243 VHKQCSKMVPNDCKPDLKHVKKVYSCDLTTLVKARTTKRPMVVDMCIREIEARGLNSEGL 302
Query: 627 YRVSGFSDLIEDVKMAFDRDGEKADISVNMYEDINIITGALKLYFRDLPIPLITYDAYPK 806
YRVSGFSDLIEDVKMAFDRDGEKADISVNMYEDINIITGALKLYFRDLPIPLITYDAYPK
Sbjct: 303 YRVSGFSDLIEDVKMAFDRDGEKADISVNMYEDINIITGALKLYFRDLPIPLITYDAYPK 362
Query: 807 FIESAKIMDPDEQLETLHEALKLLPPAHCETLRYLMAHLKRVTLHEKENLMNAENLGIVF 986
FIESAKIMDPDEQLETLHEALKLLPPAHCETLRYLMAHLKRVTLHEKENLMNAENLGIVF
Sbjct: 363 FIESAKIMDPDEQLETLHEALKLLPPAHCETLRYLMAHLKRVTLHEKENLMNAENLGIVF 422
Query: 987 GPTLMRSPELDAMAALNDIRY*RLVVELLIKNETFYF 1097
GPTLMRSPELDAMAALNDIRY RLVVELLIKNE F
Sbjct: 423 GPTLMRSPELDAMAALNDIRYQRLVVELLIKNEDILF 459
>ref|NP_001039428.1| beta-chimaerin [Bos taurus].
Length = 332
Score = 481 bits (1239), Expect = e-136
Identities = 234/334 (70%), Positives = 273/334 (81%)
Frame = +3
Query: 96 MPSKESWSGRKTNRAPVHKSKQEGRQQDLLIAALGMKLGSQKSSVTIWQPLKLFAYSQLT 275
M S+E W + A V K K ++Q+LL ALG+K+G + +W PLKLFA Q++
Sbjct: 1 MFSEELWLENEKKCAVVRKPKPGRKRQELLAVALGVKVGIK--GAFLWPPLKLFACPQIS 58
Query: 276 SLVRRATLKENEQIPKYEKVHNFKVHTFRGPHWCEYCANFMWGLIAQGVKCADCGLNVHK 455
SLVRRA L N+ YEK HNFKVHTFRGPHWCEYCANFMWGLIAQGV+C+DCGLNVHK
Sbjct: 59 SLVRRAALTHNDNHFNYEKTHNFKVHTFRGPHWCEYCANFMWGLIAQGVRCSDCGLNVHK 118
Query: 456 QCSKMVPNDCKPDLKHVKKVYSCDLTTLVKAHITKRPMVVDMCIREIESRGLNSEGLYRV 635
QCSK VPNDC+PDLK +KKVY CDLTTLVKAH T+RPMVVD+CIREIE+RGL SEGLYRV
Sbjct: 119 QCSKHVPNDCQPDLKRIKKVYCCDLTTLVKAHNTQRPMVVDICIREIEARGLKSEGLYRV 178
Query: 636 SGFSDLIEDVKMAFDRDGEKADISVNMYEDINIITGALKLYFRDLPIPLITYDAYPKFIE 815
SGF++ IEDVKMAFDRDGEKADIS N+Y DINIITGALKLYFRDLPIP+ITYD Y KFIE
Sbjct: 179 SGFTEHIEDVKMAFDRDGEKADISANIYPDINIITGALKLYFRDLPIPVITYDTYSKFIE 238
Query: 816 SAKIMDPDEQLETLHEALKLLPPAHCETLRYLMAHLKRVTLHEKENLMNAENLGIVFGPT 995
+AKI + DE+LE +HE L LLPPAH ETLRYLM HLK+VT++EK+N MNAENLGIVFGPT
Sbjct: 239 AAKISNADERLEAVHEVLMLLPPAHYETLRYLMIHLKKVTMNEKDNFMNAENLGIVFGPT 298
Query: 996 LMRSPELDAMAALNDIRY*RLVVELLIKNETFYF 1097
LMR PE + L+D+RY +L+V++LI+NE F
Sbjct: 299 LMRPPEDSTLTTLHDMRYQKLIVQILIENEDVLF 332
>ref|XP_002696764.1| PREDICTED: chimerin (chimaerin) 1-like [Bos taurus].
Length = 1413
Score = 136 bits (342), Expect = 4e-32
Identities = 73/178 (41%), Positives = 109/178 (61%)
Frame = +3
Query: 564 PMVVDMCIREIESRGLNSEGLYRVSGFSDLIEDVKMAFDRDGEKADISVNMYEDINIITG 743
P+ V+ C+ IE GL +EGLYRVSG ++++ FD+D + +S+ + +N + G
Sbjct: 1186 PLFVEKCVEFIEDTGLCTEGLYRVSGNKTDQDNIQKQFDQDHNISLVSMEV--TVNAVAG 1243
Query: 744 ALKLYFRDLPIPLITYDAYPKFIESAKIMDPDEQLETLHEALKLLPPAHCETLRYLMAHL 923
ALK +F DLP PLI Y +P+ +E+AKI+D E+L L E +K P + + RY++ HL
Sbjct: 1244 ALKAFFADLPDPLIPYSLHPELLEAAKILDKAERLHALKEIVKKFHPVNYDVFRYIITHL 1303
Query: 924 KRVTLHEKENLMNAENLGIVFGPTLMRSPELDAMAALNDIRY*RLVVELLIKNETFYF 1097
RV+ H K NLM A+NL I F PTLMR P+ + L+ + + VVE I+ F+F
Sbjct: 1304 NRVSQHNKVNLMTADNLSICFWPTLMR-PDFENREFLSTTKIHQSVVETFIQQCQFFF 1360
>ref|XP_001788731.1| PREDICTED: chimerin (chimaerin) 1-like [Bos taurus].
Length = 1457
Score = 136 bits (342), Expect = 4e-32
Identities = 73/178 (41%), Positives = 109/178 (61%)
Frame = +3
Query: 564 PMVVDMCIREIESRGLNSEGLYRVSGFSDLIEDVKMAFDRDGEKADISVNMYEDINIITG 743
P+ V+ C+ IE GL +EGLYRVSG ++++ FD+D + +S+ + +N + G
Sbjct: 1230 PLFVEKCVEFIEDTGLCTEGLYRVSGNKTDQDNIQKQFDQDHNISLVSMEV--TVNAVAG 1287
Query: 744 ALKLYFRDLPIPLITYDAYPKFIESAKIMDPDEQLETLHEALKLLPPAHCETLRYLMAHL 923
ALK +F DLP PLI Y +P+ +E+AKI+D E+L L E +K P + + RY++ HL
Sbjct: 1288 ALKAFFADLPDPLIPYSLHPELLEAAKILDKAERLHALKEIVKKFHPVNYDVFRYIITHL 1347
Query: 924 KRVTLHEKENLMNAENLGIVFGPTLMRSPELDAMAALNDIRY*RLVVELLIKNETFYF 1097
RV+ H K NLM A+NL I F PTLMR P+ + L+ + + VVE I+ F+F
Sbjct: 1348 NRVSQHNKVNLMTADNLSICFWPTLMR-PDFENREFLSTTKIHQSVVETFIQQCQFFF 1404
>ref|XP_599652.3| PREDICTED: myosin IXA, partial [Bos taurus].
Length = 555
Score = 133 bits (334), Expect = 3e-31
Identities = 78/250 (31%), Positives = 135/250 (54%), Gaps = 3/250 (1%)
Frame = +3
Query: 336 HNFKVHTFRGPHWCEYCANFMWGLIAQGVKCADCGLNVHKQCSKMVPNDC--KPDLKHVK 509
H FK + P +CEYC++ +W ++ + C C HK+C C K D +
Sbjct: 7 HIFKATQYSIPTYCEYCSSLIW-IMDRASVCKLCKYACHKKCCLKTTAKCSKKYDPELSS 65
Query: 510 KVYSCDLTTLVKAHITKRPMVVDMCIREIESRGLNSEGLYRVSGFSDLIEDVKMAFDRDG 689
+ + +L+ L T P+VV+ I IE GL +EG+YR SG ++ I++++ D D
Sbjct: 66 RQFGVELSRLTSEDRTV-PLVVEKLINYIEMHGLYTEGIYRKSGSTNKIKELRQGLDTDA 124
Query: 690 EKADISVNMYEDINIITGALKLYFRDLPIPLITYDAYPKFIESAKIMDPDEQLETLHEAL 869
E +++++ Y +I++I K + RDLP PL+T++ Y +F+ + + + E + ++ +
Sbjct: 125 E--NVNLDDY-NIHVIASVFKQWLRDLPNPLMTFELYEEFLRAMGLQERKETIRGVYSVI 181
Query: 870 KLLPPAHCETLRYLMAHLKRVTLHEKENLMNAENLGIVFGPTLMRSPE-LDAMAALNDIR 1046
L H TL L+ HL R+ L E N M+A L IVF P ++R P+ +D + ++ DI
Sbjct: 182 DQLSRTHLNTLERLIFHLVRIALQEDTNRMSANALAIVFAPCILRCPDTIDPLQSVQDIS 241
Query: 1047 Y*RLVVELLI 1076
VEL++
Sbjct: 242 KTTTCVELIV 251
>ref|NP_001098473.1| rho GTPase-activating protein 15 [Bos taurus].
Length = 471
Score = 132 bits (332), Expect = 5e-31
Identities = 65/189 (34%), Positives = 117/189 (61%)
Frame = +3
Query: 510 KVYSCDLTTLVKAHITKRPMVVDMCIREIESRGLNSEGLYRVSGFSDLIEDVKMAFDRDG 689
+++ L TL + + P V CI +E RGL+ +G+YRVSG I+ ++ +++
Sbjct: 277 QIFGSHLHTLCEREKSTVPRFVKQCIEAVEKRGLDVDGIYRVSGNLATIQKLRFIVNQE- 335
Query: 690 EKADISVNMYEDINIITGALKLYFRDLPIPLITYDAYPKFIESAKIMDPDEQLETLHEAL 869
EK ++ + +EDI+++TGALK++FRDLP PL Y + +F+E+ K D + ++E + +
Sbjct: 336 EKLNLDDSQWEDIHVVTGALKMFFRDLPEPLFPYSFFEQFVEAIKKQDNNTRIEAIKSLV 395
Query: 870 KLLPPAHCETLRYLMAHLKRVTLHEKENLMNAENLGIVFGPTLMRSPELDAMAALNDIRY 1049
+ LPP + +T++ L HL ++ +NLM+ +LGIVFGPTL+R+ + A++ + Y
Sbjct: 396 QKLPPPNRDTMKVLFGHLTKIVARASKNLMSTHSLGIVFGPTLLRAEDESGNMAVHMV-Y 454
Query: 1050 *RLVVELLI 1076
+ EL++
Sbjct: 455 QNQIAELML 463
>ref|NP_001070298.1| rho GTPase-activating protein 10 [Bos taurus].
Length = 785
Score = 131 bits (329), Expect = 1e-30
Identities = 71/178 (39%), Positives = 110/178 (61%), Gaps = 2/178 (1%)
Frame = +3
Query: 570 VVDMCIREIESRGLNSEGLYRVSGFSDLIEDV-KMAFD-RDGEKADISVNMYEDINIITG 743
++ CIR +E+RG+N +GLYRV G S ++ + M D + + D+ ++ ++ IT
Sbjct: 398 ILRKCIRAVETRGINDQGLYRVVGVSSKVQRLLSMLMDVKTCNEVDLENSVDWEVKTITS 457
Query: 744 ALKLYFRDLPIPLITYDAYPKFIESAKIMDPDEQLETLHEALKLLPPAHCETLRYLMAHL 923
ALK Y R LP PL+TY+ + FI AK P+ ++ +H + LP + E L L+ HL
Sbjct: 458 ALKQYLRSLPEPLMTYELHGDFIVPAKSGSPESRVNAIHFLVHKLPEKNKEMLDILVKHL 517
Query: 924 KRVTLHEKENLMNAENLGIVFGPTLMRSPELDAMAALNDIRY*RLVVELLIKNETFYF 1097
V+ H K+NLM NLG+VFGPTLMR P+ + +AA+ D+++ +VVE+LI+N F
Sbjct: 518 TNVSNHSKQNLMTVANLGVVFGPTLMR-PQEETVAAIMDLKFQNIVVEILIENHEKIF 574
>ref|NP_001179327.1| glucocorticoid receptor DNA-binding factor 1 [Bos taurus].
Length = 1500
Score = 128 bits (322), Expect = 8e-30
Identities = 72/194 (37%), Positives = 115/194 (59%)
Frame = +3
Query: 516 YSCDLTTLVKAHITKRPMVVDMCIREIESRGLNSEGLYRVSGFSDLIEDVKMAFDRDGEK 695
+ LTT+V P+ ++ CI IE+ GL++EG+YRVSG +E ++ FD+D
Sbjct: 1248 FGVPLTTVVTPE-KPIPVFIERCIEYIEATGLSTEGIYRVSGNKSEMESLQRQFDQD-HN 1305
Query: 696 ADISVNMYEDINIITGALKLYFRDLPIPLITYDAYPKFIESAKIMDPDEQLETLHEALKL 875
D++ + +N + GA+K +F +LP PL+ Y+ +E+ KI D +++L L E LK
Sbjct: 1306 LDLAEKDFT-VNTVAGAMKSFFSELPDPLVPYNMQIDLVEAHKINDREQKLHALKEVLKK 1364
Query: 876 LPPAHCETLRYLMAHLKRVTLHEKENLMNAENLGIVFGPTLMRSPELDAMAALNDIRY*R 1055
P + E +Y+++HL +V+ + K NLM +ENL I F PTLMR P+ M AL R +
Sbjct: 1365 FPKENHEVFKYVISHLNKVSHNNKVNLMTSENLSICFWPTLMR-PDFSTMDALTATRTYQ 1423
Query: 1056 LVVELLIKNETFYF 1097
++EL I+ F+F
Sbjct: 1424 TIIELFIQQCPFFF 1437
>ref|XP_002695993.1| PREDICTED: Rho GTPase-activating protein 23-like [Bos taurus].
Length = 1241
Score = 128 bits (322), Expect = 8e-30
Identities = 65/178 (36%), Positives = 110/178 (61%)
Frame = +3
Query: 564 PMVVDMCIREIESRGLNSEGLYRVSGFSDLIEDVKMAFDRDGEKADISVNMYEDINIITG 743
P++V C R +E+RGL S G+YRV G + ++ ++ +R ++ ++D+N+I+
Sbjct: 892 PLIVAACCRIVEARGLESTGIYRVPGNNAVVSSLQEQLNRGPGDINLQDERWQDLNVISS 951
Query: 744 ALKLYFRDLPIPLITYDAYPKFIESAKIMDPDEQLETLHEALKLLPPAHCETLRYLMAHL 923
LK +FR LP PL T D Y FIE+ +I D E+L+TL + ++ LP + ETL++L++HL
Sbjct: 952 LLKSFFRKLPEPLFTDDKYNDFIEANRIEDSRERLKTLRKLIRDLPGHYYETLKFLVSHL 1011
Query: 924 KRVTLHEKENLMNAENLGIVFGPTLMRSPELDAMAALNDIRY*RLVVELLIKNETFYF 1097
K + H ++N M NL +VFGPTL+R+ E + + + +VE LI++ ++F
Sbjct: 1012 KTIADHSEKNKMEPRNLALVFGPTLVRTSEDNMADMVTHMPDRYKIVETLIQHSDWFF 1069
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 38,341,215
Number of extensions: 966758
Number of successful extensions: 3800
Number of sequences better than 1.0e-05: 122
Number of HSP's gapped: 3677
Number of HSP's successfully gapped: 135
Length of query: 365
Length of database: 17,681,374
Length adjustment: 104
Effective length of query: 261
Effective length of database: 14,240,222
Effective search space: 3716697942
Effective search space used: 3716697942
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-004106
(1097 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_850427.1| PREDICTED: similar to chimerin (chimaerin) 1 is... 667 0.0
Alignment gi|XP_535969.2| PREDICTED: similar to N-chimaerin (NC) (N-chime... 555 e-158
Alignment gi|XP_861467.1| PREDICTED: similar to chimerin (chimaerin) 1 is... 508 e-144
Alignment gi|XP_861502.1| PREDICTED: similar to chimerin (chimaerin) 1 is... 497 e-141
Alignment gi|XP_861398.1| PREDICTED: similar to N-chimaerin (NC) (N-chime... 464 e-131
Alignment gi|XP_861369.1| PREDICTED: similar to N-chimaerin (NC) (N-chime... 464 e-131
Alignment gi|XP_532501.2| PREDICTED: similar to Beta-chimaerin (Beta-chim... 450 e-126
Alignment gi|XP_852615.1| PREDICTED: similar to N-chimaerin (NC) (N-chime... 199 3e-51
Alignment gi|XP_544755.2| PREDICTED: similar to myosin IXA [Canis familia... 136 3e-32
Alignment gi|XP_533345.2| PREDICTED: similar to ARHGAP15 [Canis familiari... 130 2e-30
>ref|XP_850427.1| PREDICTED: similar to chimerin (chimaerin) 1 isoform 2 [Canis
familiaris].
Length = 334
Score = 667 bits (1721), Expect = 0.0
Identities = 328/334 (98%), Positives = 329/334 (98%)
Frame = +3
Query: 96 MPSKESWSGRKTNRAPVHKSKQEGRQQDLLIAALGMKLGSQKSSVTIWQPLKLFAYSQLT 275
MPSKESWSGRKTNRA VHKSKQEGRQQDLLIAALGMKLGSQKSSVTIWQPLKLFAYSQLT
Sbjct: 1 MPSKESWSGRKTNRAAVHKSKQEGRQQDLLIAALGMKLGSQKSSVTIWQPLKLFAYSQLT 60
Query: 276 SLVRRATLKENEQIPKYEKVHNFKVHTFRGPHWCEYCANFMWGLIAQGVKCADCGLNVHK 455
SLVRRATLKENEQIPKYEKVHNFKVHTFRGPHWCEYCANFMWGLIAQGVKCADCGLNVHK
Sbjct: 61 SLVRRATLKENEQIPKYEKVHNFKVHTFRGPHWCEYCANFMWGLIAQGVKCADCGLNVHK 120
Query: 456 QCSKMVPNDCKPDLKHVKKVYSCDLTTLVKAHITKRPMVVDMCIREIESRGLNSEGLYRV 635
QCSKMVPNDCKPDLKHVKKVYSCDLTTLVKAHITKRPMVVDMCIREIESRGLNSEGLYRV
Sbjct: 121 QCSKMVPNDCKPDLKHVKKVYSCDLTTLVKAHITKRPMVVDMCIREIESRGLNSEGLYRV 180
Query: 636 SGFSDLIEDVKMAFDRDGEKADISVNMYEDINIITGALKLYFRDLPIPLITYDAYPKFIE 815
SGFSDLIEDVKMAFDRDGEKADISVNMYEDINIITGALKLYFRDLPIPLITYDAYPKFIE
Sbjct: 181 SGFSDLIEDVKMAFDRDGEKADISVNMYEDINIITGALKLYFRDLPIPLITYDAYPKFIE 240
Query: 816 SAKIMDPDEQLETLHEALKLLPPAHCETLRYLMAHLKRVTLHEKENLMNAENLGIVFGPT 995
SAKI+DPDEQLETLHEALKLLPPAHCETLRYLMAHLKRVTLHEKENLMNAENLGIVFGPT
Sbjct: 241 SAKILDPDEQLETLHEALKLLPPAHCETLRYLMAHLKRVTLHEKENLMNAENLGIVFGPT 300
Query: 996 LMRSPELDAMAALNDIRY*RLVVELLIKNETFYF 1097
LMRSPELDAMAALNDIRY RLVVELLIKNE F
Sbjct: 301 LMRSPELDAMAALNDIRYQRLVVELLIKNEDILF 334
>ref|XP_535969.2| PREDICTED: similar to N-chimaerin (NC) (N-chimerin) (Alpha chimerin)
(A-chimaerin) (Rho-GTPase-activating protein 2) isoform 1
[Canis familiaris].
Length = 279
Score = 555 bits (1431), Expect = e-158
Identities = 271/276 (98%), Positives = 272/276 (98%)
Frame = +3
Query: 270 LTSLVRRATLKENEQIPKYEKVHNFKVHTFRGPHWCEYCANFMWGLIAQGVKCADCGLNV 449
LTSLVRRATLKENEQIPKYEKVHNFKVHTFRGPHWCEYCANFMWGLIAQGVKCADCGLNV
Sbjct: 4 LTSLVRRATLKENEQIPKYEKVHNFKVHTFRGPHWCEYCANFMWGLIAQGVKCADCGLNV 63
Query: 450 HKQCSKMVPNDCKPDLKHVKKVYSCDLTTLVKAHITKRPMVVDMCIREIESRGLNSEGLY 629
HKQCSKMVPNDCKPDLKHVKKVYSCDLTTLVKAHITKRPMVVDMCIREIESRGLNSEGLY
Sbjct: 64 HKQCSKMVPNDCKPDLKHVKKVYSCDLTTLVKAHITKRPMVVDMCIREIESRGLNSEGLY 123
Query: 630 RVSGFSDLIEDVKMAFDRDGEKADISVNMYEDINIITGALKLYFRDLPIPLITYDAYPKF 809
RVSGFSDLIEDVKMAFDRDGEKADISVNMYEDINIITGALKLYFRDLPIPLITYDAYPKF
Sbjct: 124 RVSGFSDLIEDVKMAFDRDGEKADISVNMYEDINIITGALKLYFRDLPIPLITYDAYPKF 183
Query: 810 IESAKIMDPDEQLETLHEALKLLPPAHCETLRYLMAHLKRVTLHEKENLMNAENLGIVFG 989
IESAKI+DPDEQLETLHEALKLLPPAHCETLRYLMAHLKRVTLHEKENLMNAENLGIVFG
Sbjct: 184 IESAKILDPDEQLETLHEALKLLPPAHCETLRYLMAHLKRVTLHEKENLMNAENLGIVFG 243
Query: 990 PTLMRSPELDAMAALNDIRY*RLVVELLIKNETFYF 1097
PTLMRSPELDAMAALNDIRY RLVVELLIKNE F
Sbjct: 244 PTLMRSPELDAMAALNDIRYQRLVVELLIKNEDILF 279
>ref|XP_861467.1| PREDICTED: similar to chimerin (chimaerin) 1 isoform 5 [Canis
familiaris].
Length = 276
Score = 508 bits (1308), Expect = e-144
Identities = 269/334 (80%), Positives = 270/334 (80%)
Frame = +3
Query: 96 MPSKESWSGRKTNRAPVHKSKQEGRQQDLLIAALGMKLGSQKSSVTIWQPLKLFAYSQLT 275
MPSKESWSGRKTNRA VHKSKQEGRQQDLLIAALGMKLGSQKSSVTIWQPLKLFAYSQLT
Sbjct: 1 MPSKESWSGRKTNRAAVHKSKQEGRQQDLLIAALGMKLGSQKSSVTIWQPLKLFAYSQLT 60
Query: 276 SLVRRATLKENEQIPKYEKVHNFKVHTFRGPHWCEYCANFMWGLIAQGVKCADCGLNVHK 455
SLVRRATLKENEQIPKYEKVHNFKVHTFRGPHWCEYCANFMWGLIAQGVKCA GLN
Sbjct: 61 SLVRRATLKENEQIPKYEKVHNFKVHTFRGPHWCEYCANFMWGLIAQGVKCA--GLN--- 115
Query: 456 QCSKMVPNDCKPDLKHVKKVYSCDLTTLVKAHITKRPMVVDMCIREIESRGLNSEGLYRV 635
S GL YRV
Sbjct: 116 ------------------------------------------------SEGL-----YRV 122
Query: 636 SGFSDLIEDVKMAFDRDGEKADISVNMYEDINIITGALKLYFRDLPIPLITYDAYPKFIE 815
SGFSDLIEDVKMAFDRDGEKADISVNMYEDINIITGALKLYFRDLPIPLITYDAYPKFIE
Sbjct: 123 SGFSDLIEDVKMAFDRDGEKADISVNMYEDINIITGALKLYFRDLPIPLITYDAYPKFIE 182
Query: 816 SAKIMDPDEQLETLHEALKLLPPAHCETLRYLMAHLKRVTLHEKENLMNAENLGIVFGPT 995
SAKI+DPDEQLETLHEALKLLPPAHCETLRYLMAHLKRVTLHEKENLMNAENLGIVFGPT
Sbjct: 183 SAKILDPDEQLETLHEALKLLPPAHCETLRYLMAHLKRVTLHEKENLMNAENLGIVFGPT 242
Query: 996 LMRSPELDAMAALNDIRY*RLVVELLIKNETFYF 1097
LMRSPELDAMAALNDIRY RLVVELLIKNE F
Sbjct: 243 LMRSPELDAMAALNDIRYQRLVVELLIKNEDILF 276
>ref|XP_861502.1| PREDICTED: similar to chimerin (chimaerin) 1 isoform 6 [Canis
familiaris].
Length = 253
Score = 497 bits (1280), Expect = e-141
Identities = 241/242 (99%), Positives = 241/242 (99%)
Frame = +3
Query: 96 MPSKESWSGRKTNRAPVHKSKQEGRQQDLLIAALGMKLGSQKSSVTIWQPLKLFAYSQLT 275
MPSKESWSGRKTNRA VHKSKQEGRQQDLLIAALGMKLGSQKSSVTIWQPLKLFAYSQLT
Sbjct: 1 MPSKESWSGRKTNRAAVHKSKQEGRQQDLLIAALGMKLGSQKSSVTIWQPLKLFAYSQLT 60
Query: 276 SLVRRATLKENEQIPKYEKVHNFKVHTFRGPHWCEYCANFMWGLIAQGVKCADCGLNVHK 455
SLVRRATLKENEQIPKYEKVHNFKVHTFRGPHWCEYCANFMWGLIAQGVKCADCGLNVHK
Sbjct: 61 SLVRRATLKENEQIPKYEKVHNFKVHTFRGPHWCEYCANFMWGLIAQGVKCADCGLNVHK 120
Query: 456 QCSKMVPNDCKPDLKHVKKVYSCDLTTLVKAHITKRPMVVDMCIREIESRGLNSEGLYRV 635
QCSKMVPNDCKPDLKHVKKVYSCDLTTLVKAHITKRPMVVDMCIREIESRGLNSEGLYRV
Sbjct: 121 QCSKMVPNDCKPDLKHVKKVYSCDLTTLVKAHITKRPMVVDMCIREIESRGLNSEGLYRV 180
Query: 636 SGFSDLIEDVKMAFDRDGEKADISVNMYEDINIITGALKLYFRDLPIPLITYDAYPKFIE 815
SGFSDLIEDVKMAFDRDGEKADISVNMYEDINIITGALKLYFRDLPIPLITYDAYPKFIE
Sbjct: 181 SGFSDLIEDVKMAFDRDGEKADISVNMYEDINIITGALKLYFRDLPIPLITYDAYPKFIE 240
Query: 816 SA 821
SA
Sbjct: 241 SA 242
>ref|XP_861398.1| PREDICTED: similar to N-chimaerin (NC) (N-chimerin) (Alpha chimerin)
(A-chimaerin) (Rho-GTPase-activating protein 2) isoform 4
[Canis familiaris].
Length = 234
Score = 464 bits (1193), Expect = e-131
Identities = 229/234 (97%), Positives = 230/234 (98%)
Frame = +3
Query: 396 MWGLIAQGVKCADCGLNVHKQCSKMVPNDCKPDLKHVKKVYSCDLTTLVKAHITKRPMVV 575
MWGLIAQGVKCADCGLNVHKQCSKMVPNDCKPDLKHVKKVYSCDLTTLVKAHITKRPMVV
Sbjct: 1 MWGLIAQGVKCADCGLNVHKQCSKMVPNDCKPDLKHVKKVYSCDLTTLVKAHITKRPMVV 60
Query: 576 DMCIREIESRGLNSEGLYRVSGFSDLIEDVKMAFDRDGEKADISVNMYEDINIITGALKL 755
DMCIREIESRGLNSEGLYRVSGFSDLIEDVKMAFDRDGEKADISVNMYEDINIITGALKL
Sbjct: 61 DMCIREIESRGLNSEGLYRVSGFSDLIEDVKMAFDRDGEKADISVNMYEDINIITGALKL 120
Query: 756 YFRDLPIPLITYDAYPKFIESAKIMDPDEQLETLHEALKLLPPAHCETLRYLMAHLKRVT 935
YFRDLPIPLITYDAYPKFIESAKI+DPDEQLETLHEALKLLPPAHCETLRYLMAHLKRVT
Sbjct: 121 YFRDLPIPLITYDAYPKFIESAKILDPDEQLETLHEALKLLPPAHCETLRYLMAHLKRVT 180
Query: 936 LHEKENLMNAENLGIVFGPTLMRSPELDAMAALNDIRY*RLVVELLIKNETFYF 1097
LHEKENLMNAENLGIVFGPTLMRSPELDAMAALNDIRY RLVVELLIKNE F
Sbjct: 181 LHEKENLMNAENLGIVFGPTLMRSPELDAMAALNDIRYQRLVVELLIKNEDILF 234
>ref|XP_861369.1| PREDICTED: similar to N-chimaerin (NC) (N-chimerin) (Alpha chimerin)
(A-chimaerin) (Rho-GTPase-activating protein 2) isoform 3
[Canis familiaris].
Length = 234
Score = 464 bits (1193), Expect = e-131
Identities = 229/234 (97%), Positives = 230/234 (98%)
Frame = +3
Query: 396 MWGLIAQGVKCADCGLNVHKQCSKMVPNDCKPDLKHVKKVYSCDLTTLVKAHITKRPMVV 575
MWGLIAQGVKCADCGLNVHKQCSKMVPNDCKPDLKHVKKVYSCDLTTLVKAHITKRPMVV
Sbjct: 1 MWGLIAQGVKCADCGLNVHKQCSKMVPNDCKPDLKHVKKVYSCDLTTLVKAHITKRPMVV 60
Query: 576 DMCIREIESRGLNSEGLYRVSGFSDLIEDVKMAFDRDGEKADISVNMYEDINIITGALKL 755
DMCIREIESRGLNSEGLYRVSGFSDLIEDVKMAFDRDGEKADISVNMYEDINIITGALKL
Sbjct: 61 DMCIREIESRGLNSEGLYRVSGFSDLIEDVKMAFDRDGEKADISVNMYEDINIITGALKL 120
Query: 756 YFRDLPIPLITYDAYPKFIESAKIMDPDEQLETLHEALKLLPPAHCETLRYLMAHLKRVT 935
YFRDLPIPLITYDAYPKFIESAKI+DPDEQLETLHEALKLLPPAHCETLRYLMAHLKRVT
Sbjct: 121 YFRDLPIPLITYDAYPKFIESAKILDPDEQLETLHEALKLLPPAHCETLRYLMAHLKRVT 180
Query: 936 LHEKENLMNAENLGIVFGPTLMRSPELDAMAALNDIRY*RLVVELLIKNETFYF 1097
LHEKENLMNAENLGIVFGPTLMRSPELDAMAALNDIRY RLVVELLIKNE F
Sbjct: 181 LHEKENLMNAENLGIVFGPTLMRSPELDAMAALNDIRYQRLVVELLIKNEDILF 234
>ref|XP_532501.2| PREDICTED: similar to Beta-chimaerin (Beta-chimerin)
(Rho-GTPase-activating protein 3) [Canis familiaris].
Length = 415
Score = 450 bits (1158), Expect = e-126
Identities = 216/295 (73%), Positives = 252/295 (85%)
Frame = +3
Query: 213 SQKSSVTIWQPLKLFAYSQLTSLVRRATLKENEQIPKYEKVHNFKVHTFRGPHWCEYCAN 392
S+K+SVT + + +++SLVRRA L N+ YEK HNFKVHTFRGPHWCEYCAN
Sbjct: 124 SRKTSVTNEEHTTV---EKISSLVRRAALTHNDNHFNYEKTHNFKVHTFRGPHWCEYCAN 180
Query: 393 FMWGLIAQGVKCADCGLNVHKQCSKMVPNDCKPDLKHVKKVYSCDLTTLVKAHITKRPMV 572
FMWGLIAQGV+C+DCGLNVHKQCSK VPNDC+PDLK +KKVY CDLTTLVKAH T+RPMV
Sbjct: 181 FMWGLIAQGVRCSDCGLNVHKQCSKHVPNDCQPDLKRIKKVYCCDLTTLVKAHNTQRPMV 240
Query: 573 VDMCIREIESRGLNSEGLYRVSGFSDLIEDVKMAFDRDGEKADISVNMYEDINIITGALK 752
VD+CIREIE+RGL SEGLYRVSGF++ IEDVKMAFDRDGEKADIS N+Y DINIITGALK
Sbjct: 241 VDICIREIEARGLKSEGLYRVSGFTEHIEDVKMAFDRDGEKADISANIYPDINIITGALK 300
Query: 753 LYFRDLPIPLITYDAYPKFIESAKIMDPDEQLETLHEALKLLPPAHCETLRYLMAHLKRV 932
LYFRDLPIP+ITYD YPKFIE+AKI + DE+LE +H+ L LLPPAH ETLRYLM HLK+V
Sbjct: 301 LYFRDLPIPVITYDTYPKFIEAAKISNADERLEAVHDVLMLLPPAHYETLRYLMIHLKKV 360
Query: 933 TLHEKENLMNAENLGIVFGPTLMRSPELDAMAALNDIRY*RLVVELLIKNETFYF 1097
T++EK+N MNAENLGIVFGPTLMRSPE + L+D+RY +L+V++LI+NE F
Sbjct: 361 TMNEKDNFMNAENLGIVFGPTLMRSPEDSTLTTLHDMRYQKLIVQILIENEDVLF 415
>ref|XP_852615.1| PREDICTED: similar to N-chimaerin (NC) (N-chimerin) (Alpha
chimerin) (A-chimaerin) (Rho-GTPase-activating protein
2) [Canis familiaris].
Length = 251
Score = 199 bits (507), Expect = 3e-51
Identities = 89/90 (98%), Positives = 89/90 (98%)
Frame = +3
Query: 291 ATLKENEQIPKYEKVHNFKVHTFRGPHWCEYCANFMWGLIAQGVKCADCGLNVHKQCSKM 470
ATLKENEQIPKYEKVHNFKVHTFRGPHWCEYCANFMWGLIAQGVKCADCGLNVHKQCSKM
Sbjct: 162 ATLKENEQIPKYEKVHNFKVHTFRGPHWCEYCANFMWGLIAQGVKCADCGLNVHKQCSKM 221
Query: 471 VPNDCKPDLKHVKKVYSCDLTTLVKAHITK 560
VPNDCKP LKHVKKVYSCDLTTLVKAHITK
Sbjct: 222 VPNDCKPGLKHVKKVYSCDLTTLVKAHITK 251
>ref|XP_544755.2| PREDICTED: similar to myosin IXA [Canis familiaris].
Length = 2557
Score = 136 bits (343), Expect = 3e-32
Identities = 82/268 (30%), Positives = 141/268 (52%), Gaps = 4/268 (1%)
Frame = +3
Query: 285 RRATLKENEQIPKYEKVHNFKVHTFRGPHWCEYCANFMWGLIAQGVKCADCGLNVHKQCS 464
R+ K+ + + H FK + P +CEYC++ +W ++ + C C HK+C
Sbjct: 1992 RKKRRKKETDLVEEHNGHIFKATQYSIPTYCEYCSSLIW-IMDRASVCKLCKYACHKKCC 2050
Query: 465 KMVPNDC--KPDLKHVKKVYSCDLTTLVKAHITKRPMVVDMCIREIESRGLNSEGLYRVS 638
C K D + + + +L+ L T P+VV+ I IE GL +EG+YR S
Sbjct: 2051 LKTTAKCSKKYDPELSSRQFGVELSRLTSEERTV-PLVVEKLINYIEMHGLYTEGIYRKS 2109
Query: 639 GFSDLIEDVKMAFDRDGEKADISVNMYE-DINIITGALKLYFRDLPIPLITYDAYPKFIE 815
G ++ I++++ D D E SVN+ + +I++I K + RDLP PL+T++ Y +F+
Sbjct: 2110 GSTNKIKELRQGLDTDAE----SVNLDDYNIHVIASVFKQWLRDLPNPLMTFELYEEFLR 2165
Query: 816 SAKIMDPDEQLETLHEALKLLPPAHCETLRYLMAHLKRVTLHEKENLMNAENLGIVFGPT 995
+ + + E + ++ + L H TL L+ HL R+ L E+ N M+A L IVF P
Sbjct: 2166 AMGLQERKETIRGVYSVIDQLSRTHLNTLERLIFHLVRIALQEETNRMSANALAIVFAPC 2225
Query: 996 LMRSPE-LDAMAALNDIRY*RLVVELLI 1076
++R P+ +D + ++ DI VEL++
Sbjct: 2226 ILRCPDTIDPLQSVQDISKTTTCVELIV 2253
>ref|XP_533345.2| PREDICTED: similar to ARHGAP15 [Canis familiaris].
Length = 475
Score = 130 bits (328), Expect = 2e-30
Identities = 64/189 (33%), Positives = 119/189 (62%)
Frame = +3
Query: 510 KVYSCDLTTLVKAHITKRPMVVDMCIREIESRGLNSEGLYRVSGFSDLIEDVKMAFDRDG 689
+++ L T+ + + P V CI +E RGL+ +G+YRVSG I+ ++ +++
Sbjct: 277 QIFGSHLHTVCERENSTVPRFVKQCIEAVEKRGLDVDGIYRVSGNLATIQKLRFIVNQE- 335
Query: 690 EKADISVNMYEDINIITGALKLYFRDLPIPLITYDAYPKFIESAKIMDPDEQLETLHEAL 869
EK ++ + +EDI+++TGALK++FR+LP PL Y + +F+E+ K D + ++ET+ +
Sbjct: 336 EKLNLDDSQWEDIHVVTGALKMFFRELPEPLFPYSFFERFVEAIKKQDYNTRIETIKSLV 395
Query: 870 KLLPPAHCETLRYLMAHLKRVTLHEKENLMNAENLGIVFGPTLMRSPELDAMAALNDIRY 1049
+ LPP + +T++ L HL ++ +NLM+ ++LGIVFGPTL+R+ + A++ + Y
Sbjct: 396 QKLPPPNRDTMKILFGHLTKIVAKASKNLMSTQSLGIVFGPTLLRAQDEMGNMAVHMV-Y 454
Query: 1050 *RLVVELLI 1076
+ EL++
Sbjct: 455 QNQIAELML 463
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 40,026,496
Number of extensions: 997252
Number of successful extensions: 4191
Number of sequences better than 1.0e-05: 150
Number of HSP's gapped: 4055
Number of HSP's successfully gapped: 167
Length of query: 365
Length of database: 18,874,504
Length adjustment: 104
Effective length of query: 261
Effective length of database: 15,407,560
Effective search space: 4021373160
Effective search space used: 4021373160
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-004106
(1097 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001193531.1| N-chimaerin isoform 3 [Homo sapiens]. 664 0.0
Alignment gi|NP_001813.1| N-chimaerin isoform 1 [Homo sapiens]. 555 e-158
Alignment gi|NP_001020372.2| N-chimaerin isoform 2 [Homo sapiens]. 504 e-143
Alignment gi|NP_001035025.1| beta-chimaerin isoform 1 [Homo sapiens]. 484 e-137
Alignment gi|NP_004058.1| beta-chimaerin isoform 2 [Homo sapiens]. 445 e-125
Alignment gi|NP_954976.1| rho GTPase-activating protein 27 isoform a [Hom... 134 1e-31
Alignment gi|NP_008832.2| myosin-IXa [Homo sapiens]. 134 1e-31
Alignment gi|NP_001025226.1| rho GTPase-activating protein 5 isoform a [H... 130 3e-30
Alignment gi|NP_001164.2| rho GTPase-activating protein 5 isoform b [Homo... 130 3e-30
Alignment gi|NP_078881.3| rho GTPase-activating protein 10 [Homo sapiens]. 129 4e-30
>ref|NP_001193531.1| N-chimaerin isoform 3 [Homo sapiens].
Length = 334
Score = 664 bits (1712), Expect = 0.0
Identities = 326/334 (97%), Positives = 327/334 (97%)
Frame = +3
Query: 96 MPSKESWSGRKTNRAPVHKSKQEGRQQDLLIAALGMKLGSQKSSVTIWQPLKLFAYSQLT 275
MPSKESWSGRKTNRA VHKSKQEGRQQDLLIAALGMKLGS KSSVTIWQPLKLFAYSQLT
Sbjct: 1 MPSKESWSGRKTNRAAVHKSKQEGRQQDLLIAALGMKLGSPKSSVTIWQPLKLFAYSQLT 60
Query: 276 SLVRRATLKENEQIPKYEKVHNFKVHTFRGPHWCEYCANFMWGLIAQGVKCADCGLNVHK 455
SLVRRATLKENEQIPKYEK+HNFKVHTFRGPHWCEYCANFMWGLIAQGVKCADCGLNVHK
Sbjct: 61 SLVRRATLKENEQIPKYEKIHNFKVHTFRGPHWCEYCANFMWGLIAQGVKCADCGLNVHK 120
Query: 456 QCSKMVPNDCKPDLKHVKKVYSCDLTTLVKAHITKRPMVVDMCIREIESRGLNSEGLYRV 635
QCSKMVPNDCKPDLKHVKKVYSCDLTTLVKAH TKRPMVVDMCIREIESRGLNSEGLYRV
Sbjct: 121 QCSKMVPNDCKPDLKHVKKVYSCDLTTLVKAHTTKRPMVVDMCIREIESRGLNSEGLYRV 180
Query: 636 SGFSDLIEDVKMAFDRDGEKADISVNMYEDINIITGALKLYFRDLPIPLITYDAYPKFIE 815
SGFSDLIEDVKMAFDRDGEKADISVNMYEDINIITGALKLYFRDLPIPLITYDAYPKFIE
Sbjct: 181 SGFSDLIEDVKMAFDRDGEKADISVNMYEDINIITGALKLYFRDLPIPLITYDAYPKFIE 240
Query: 816 SAKIMDPDEQLETLHEALKLLPPAHCETLRYLMAHLKRVTLHEKENLMNAENLGIVFGPT 995
SAKIMDPDEQLETLHEALKLLPPAHCETLRYLMAHLKRVTLHEKENLMNAENLGIVFGPT
Sbjct: 241 SAKIMDPDEQLETLHEALKLLPPAHCETLRYLMAHLKRVTLHEKENLMNAENLGIVFGPT 300
Query: 996 LMRSPELDAMAALNDIRY*RLVVELLIKNETFYF 1097
LMRSPELDAMAALNDIRY RLVVELLIKNE F
Sbjct: 301 LMRSPELDAMAALNDIRYQRLVVELLIKNEDILF 334
>ref|NP_001813.1| N-chimaerin isoform 1 [Homo sapiens].
Length = 459
Score = 555 bits (1429), Expect = e-158
Identities = 270/277 (97%), Positives = 272/277 (98%)
Frame = +3
Query: 267 QLTSLVRRATLKENEQIPKYEKVHNFKVHTFRGPHWCEYCANFMWGLIAQGVKCADCGLN 446
+LTSLVRRATLKENEQIPKYEK+HNFKVHTFRGPHWCEYCANFMWGLIAQGVKCADCGLN
Sbjct: 183 RLTSLVRRATLKENEQIPKYEKIHNFKVHTFRGPHWCEYCANFMWGLIAQGVKCADCGLN 242
Query: 447 VHKQCSKMVPNDCKPDLKHVKKVYSCDLTTLVKAHITKRPMVVDMCIREIESRGLNSEGL 626
VHKQCSKMVPNDCKPDLKHVKKVYSCDLTTLVKAH TKRPMVVDMCIREIESRGLNSEGL
Sbjct: 243 VHKQCSKMVPNDCKPDLKHVKKVYSCDLTTLVKAHTTKRPMVVDMCIREIESRGLNSEGL 302
Query: 627 YRVSGFSDLIEDVKMAFDRDGEKADISVNMYEDINIITGALKLYFRDLPIPLITYDAYPK 806
YRVSGFSDLIEDVKMAFDRDGEKADISVNMYEDINIITGALKLYFRDLPIPLITYDAYPK
Sbjct: 303 YRVSGFSDLIEDVKMAFDRDGEKADISVNMYEDINIITGALKLYFRDLPIPLITYDAYPK 362
Query: 807 FIESAKIMDPDEQLETLHEALKLLPPAHCETLRYLMAHLKRVTLHEKENLMNAENLGIVF 986
FIESAKIMDPDEQLETLHEALKLLPPAHCETLRYLMAHLKRVTLHEKENLMNAENLGIVF
Sbjct: 363 FIESAKIMDPDEQLETLHEALKLLPPAHCETLRYLMAHLKRVTLHEKENLMNAENLGIVF 422
Query: 987 GPTLMRSPELDAMAALNDIRY*RLVVELLIKNETFYF 1097
GPTLMRSPELDAMAALNDIRY RLVVELLIKNE F
Sbjct: 423 GPTLMRSPELDAMAALNDIRYQRLVVELLIKNEDILF 459
>ref|NP_001020372.2| N-chimaerin isoform 2 [Homo sapiens].
Length = 433
Score = 504 bits (1299), Expect = e-143
Identities = 245/251 (97%), Positives = 246/251 (98%)
Frame = +3
Query: 345 KVHTFRGPHWCEYCANFMWGLIAQGVKCADCGLNVHKQCSKMVPNDCKPDLKHVKKVYSC 524
+VHTFRGPHWCEYCANFMWGLIAQGVKCADCGLNVHKQCSKMVPNDCKPDLKHVKKVYSC
Sbjct: 183 RVHTFRGPHWCEYCANFMWGLIAQGVKCADCGLNVHKQCSKMVPNDCKPDLKHVKKVYSC 242
Query: 525 DLTTLVKAHITKRPMVVDMCIREIESRGLNSEGLYRVSGFSDLIEDVKMAFDRDGEKADI 704
DLTTLVKAH TKRPMVVDMCIREIESRGLNSEGLYRVSGFSDLIEDVKMAFDRDGEKADI
Sbjct: 243 DLTTLVKAHTTKRPMVVDMCIREIESRGLNSEGLYRVSGFSDLIEDVKMAFDRDGEKADI 302
Query: 705 SVNMYEDINIITGALKLYFRDLPIPLITYDAYPKFIESAKIMDPDEQLETLHEALKLLPP 884
SVNMYEDINIITGALKLYFRDLPIPLITYDAYPKFIESAKIMDPDEQLETLHEALKLLPP
Sbjct: 303 SVNMYEDINIITGALKLYFRDLPIPLITYDAYPKFIESAKIMDPDEQLETLHEALKLLPP 362
Query: 885 AHCETLRYLMAHLKRVTLHEKENLMNAENLGIVFGPTLMRSPELDAMAALNDIRY*RLVV 1064
AHCETLRYLMAHLKRVTLHEKENLMNAENLGIVFGPTLMRSPELDAMAALNDIRY RLVV
Sbjct: 363 AHCETLRYLMAHLKRVTLHEKENLMNAENLGIVFGPTLMRSPELDAMAALNDIRYQRLVV 422
Query: 1065 ELLIKNETFYF 1097
ELLIKNE F
Sbjct: 423 ELLIKNEDILF 433
>ref|NP_001035025.1| beta-chimaerin isoform 1 [Homo sapiens].
Length = 332
Score = 484 bits (1246), Expect = e-137
Identities = 235/334 (70%), Positives = 275/334 (82%)
Frame = +3
Query: 96 MPSKESWSGRKTNRAPVHKSKQEGRQQDLLIAALGMKLGSQKSSVTIWQPLKLFAYSQLT 275
M S+E W + A V KSKQ ++Q+LL A G+K+G + +W PLKLFA SQ++
Sbjct: 1 MFSEELWLENEKKCAVVRKSKQGRKRQELLAVAFGVKVGVKGGF--LWPPLKLFACSQIS 58
Query: 276 SLVRRATLKENEQIPKYEKVHNFKVHTFRGPHWCEYCANFMWGLIAQGVKCADCGLNVHK 455
SLVRRA L N+ YEK HNFKVHTFRGPHWCEYCANFMWGLIAQGV+C+DCGLNVHK
Sbjct: 59 SLVRRAALTHNDNHFNYEKTHNFKVHTFRGPHWCEYCANFMWGLIAQGVRCSDCGLNVHK 118
Query: 456 QCSKMVPNDCKPDLKHVKKVYSCDLTTLVKAHITKRPMVVDMCIREIESRGLNSEGLYRV 635
QCSK VPNDC+PDLK +KKVY CDLTTLVKAH T+RPMVVD+CIREIE+RGL SEGLYRV
Sbjct: 119 QCSKHVPNDCQPDLKRIKKVYCCDLTTLVKAHNTQRPMVVDICIREIEARGLKSEGLYRV 178
Query: 636 SGFSDLIEDVKMAFDRDGEKADISVNMYEDINIITGALKLYFRDLPIPLITYDAYPKFIE 815
SGF++ IEDVKMAFDRDGEKADIS N+Y DINIITGALKLYFRDLPIP+ITYD Y KFI+
Sbjct: 179 SGFTEHIEDVKMAFDRDGEKADISANVYPDINIITGALKLYFRDLPIPVITYDTYSKFID 238
Query: 816 SAKIMDPDEQLETLHEALKLLPPAHCETLRYLMAHLKRVTLHEKENLMNAENLGIVFGPT 995
+AKI + DE+LE +HE L LLPPAH ETLRYLM HLK+VT++EK+N MNAENLGIVFGPT
Sbjct: 239 AAKISNADERLEAVHEVLMLLPPAHYETLRYLMIHLKKVTMNEKDNFMNAENLGIVFGPT 298
Query: 996 LMRSPELDAMAALNDIRY*RLVVELLIKNETFYF 1097
LMR PE + L+D+RY +L+V++LI+NE F
Sbjct: 299 LMRPPEDSTLTTLHDMRYQKLIVQILIENEDVLF 332
>ref|NP_004058.1| beta-chimaerin isoform 2 [Homo sapiens].
Length = 468
Score = 445 bits (1145), Expect = e-125
Identities = 210/280 (75%), Positives = 242/280 (86%)
Frame = +3
Query: 258 AYSQLTSLVRRATLKENEQIPKYEKVHNFKVHTFRGPHWCEYCANFMWGLIAQGVKCADC 437
A +++SLVRRA L N+ YEK HNFKVHTFRGPHWCEYCANFMWGLIAQGV+C+DC
Sbjct: 189 AVEKISSLVRRAALTHNDNHFNYEKTHNFKVHTFRGPHWCEYCANFMWGLIAQGVRCSDC 248
Query: 438 GLNVHKQCSKMVPNDCKPDLKHVKKVYSCDLTTLVKAHITKRPMVVDMCIREIESRGLNS 617
GLNVHKQCSK VPNDC+PDLK +KKVY CDLTTLVKAH T+RPMVVD+CIREIE+RGL S
Sbjct: 249 GLNVHKQCSKHVPNDCQPDLKRIKKVYCCDLTTLVKAHNTQRPMVVDICIREIEARGLKS 308
Query: 618 EGLYRVSGFSDLIEDVKMAFDRDGEKADISVNMYEDINIITGALKLYFRDLPIPLITYDA 797
EGLYRVSGF++ IEDVKMAFDRDGEKADIS N+Y DINIITGALKLYFRDLPIP+ITYD
Sbjct: 309 EGLYRVSGFTEHIEDVKMAFDRDGEKADISANVYPDINIITGALKLYFRDLPIPVITYDT 368
Query: 798 YPKFIESAKIMDPDEQLETLHEALKLLPPAHCETLRYLMAHLKRVTLHEKENLMNAENLG 977
Y KFI++AKI + DE+LE +HE L LLPPAH ETLRYLM HLK+VT++EK+N MNAENLG
Sbjct: 369 YSKFIDAAKISNADERLEAVHEVLMLLPPAHYETLRYLMIHLKKVTMNEKDNFMNAENLG 428
Query: 978 IVFGPTLMRSPELDAMAALNDIRY*RLVVELLIKNETFYF 1097
IVFGPTLMR PE + L+D+RY +L+V++LI+NE F
Sbjct: 429 IVFGPTLMRPPEDSTLTTLHDMRYQKLIVQILIENEDVLF 468
>ref|NP_954976.1| rho GTPase-activating protein 27 isoform a [Homo sapiens].
Length = 548
Score = 134 bits (338), Expect = 1e-31
Identities = 70/190 (36%), Positives = 118/190 (62%)
Frame = +3
Query: 510 KVYSCDLTTLVKAHITKRPMVVDMCIREIESRGLNSEGLYRVSGFSDLIEDVKMAFDRDG 689
+V+ C L L + ++ P V CIR +E+RGL+ +GLYR+SG I+ ++ D D
Sbjct: 352 QVFGCALAALCERERSRVPRFVQQCIRAVEARGLDIDGLYRISGNLATIQKLRYKVDHD- 410
Query: 690 EKADISVNMYEDINIITGALKLYFRDLPIPLITYDAYPKFIESAKIMDPDEQLETLHEAL 869
E+ D+ +ED+++ITGALKL+FR+LP PL + + +FI + K+ D + + + +
Sbjct: 411 ERLDLDDGRWEDVHVITGALKLFFRELPEPLFPFSHFRQFIAAIKLQDQARRSRCVRDLV 470
Query: 870 KLLPPAHCETLRYLMAHLKRVTLHEKENLMNAENLGIVFGPTLMRSPELDAMAALNDIRY 1049
+ LP + +TLR L HL RV H ++N M+ +++ IVFGPTL+R PE++ + + +
Sbjct: 471 RSLPAPNHDTLRMLFQHLCRVIEHGEQNRMSVQSVAIVFGPTLLR-PEVEETSMPMTMVF 529
Query: 1050 *RLVVELLIK 1079
VVEL+++
Sbjct: 530 QNQVVELILQ 539
>ref|NP_008832.2| myosin-IXa [Homo sapiens].
Length = 2548
Score = 134 bits (337), Expect = 1e-31
Identities = 82/268 (30%), Positives = 139/268 (51%), Gaps = 4/268 (1%)
Frame = +3
Query: 285 RRATLKENEQIPKYEKVHNFKVHTFRGPHWCEYCANFMWGLIAQGVKCADCGLNVHKQCS 464
R+ K+ + + H FK + P +CEYC++ +W ++ + C C HK+C
Sbjct: 1983 RKKRRKKETDLVEEHNGHIFKATQYSIPTYCEYCSSLIW-IMDRASVCKLCKYACHKKCC 2041
Query: 465 KMVPNDC--KPDLKHVKKVYSCDLTTLVKAHITKRPMVVDMCIREIESRGLNSEGLYRVS 638
C K D + + + +L+ L T P+VV+ I IE GL +EG+YR S
Sbjct: 2042 LKTTAKCSKKYDPELSSRQFGVELSRLTSEDRTV-PLVVEKLINYIEMHGLYTEGIYRKS 2100
Query: 639 GFSDLIEDVKMAFDRDGEKADISVNMYE-DINIITGALKLYFRDLPIPLITYDAYPKFIE 815
G ++ I++++ D D E SVN+ + +I++I K + RDLP PL+T++ Y +F+
Sbjct: 2101 GSTNKIKELRQGLDTDAE----SVNLDDYNIHVIASVFKQWLRDLPNPLMTFELYEEFLR 2156
Query: 816 SAKIMDPDEQLETLHEALKLLPPAHCETLRYLMAHLKRVTLHEKENLMNAENLGIVFGPT 995
+ + + E + ++ + L H TL L+ HL R+ L E N M+A L IVF P
Sbjct: 2157 AMGLQERKETIRGVYSVIDQLSRTHLNTLERLIFHLVRIALQEDTNRMSANALAIVFAPC 2216
Query: 996 LMRSPE-LDAMAALNDIRY*RLVVELLI 1076
++R P+ D + ++ DI VEL++
Sbjct: 2217 ILRCPDTTDPLQSVQDISKTTTCVELIV 2244
>ref|NP_001025226.1| rho GTPase-activating protein 5 isoform a [Homo sapiens].
Length = 1502
Score = 130 bits (326), Expect = 3e-30
Identities = 72/178 (40%), Positives = 106/178 (59%)
Frame = +3
Query: 564 PMVVDMCIREIESRGLNSEGLYRVSGFSDLIEDVKMAFDRDGEKADISVNMYEDINIITG 743
P+ V+ C+ IE GL +EGLYRVSG ++++ FD+D +S+ + +N + G
Sbjct: 1275 PLFVEKCVEFIEDTGLCTEGLYRVSGNKTDQDNIQKQFDQDHNINLVSMEV--TVNAVAG 1332
Query: 744 ALKLYFRDLPIPLITYDAYPKFIESAKIMDPDEQLETLHEALKLLPPAHCETLRYLMAHL 923
ALK +F DLP PLI Y +P+ +E+AKI D E+L L E +K P + + RY++ HL
Sbjct: 1333 ALKAFFADLPDPLIPYSLHPELLEAAKIPDKTERLHALKEIVKKFHPVNYDVFRYVITHL 1392
Query: 924 KRVTLHEKENLMNAENLGIVFGPTLMRSPELDAMAALNDIRY*RLVVELLIKNETFYF 1097
RV+ K NLM A+NL I F PTLMR P+ + L+ + + VVE I+ F+F
Sbjct: 1393 NRVSQQHKINLMTADNLSICFWPTLMR-PDFENREFLSTTKIHQSVVETFIQQCQFFF 1449
>ref|NP_001164.2| rho GTPase-activating protein 5 isoform b [Homo sapiens].
Length = 1501
Score = 130 bits (326), Expect = 3e-30
Identities = 72/178 (40%), Positives = 106/178 (59%)
Frame = +3
Query: 564 PMVVDMCIREIESRGLNSEGLYRVSGFSDLIEDVKMAFDRDGEKADISVNMYEDINIITG 743
P+ V+ C+ IE GL +EGLYRVSG ++++ FD+D +S+ + +N + G
Sbjct: 1274 PLFVEKCVEFIEDTGLCTEGLYRVSGNKTDQDNIQKQFDQDHNINLVSMEV--TVNAVAG 1331
Query: 744 ALKLYFRDLPIPLITYDAYPKFIESAKIMDPDEQLETLHEALKLLPPAHCETLRYLMAHL 923
ALK +F DLP PLI Y +P+ +E+AKI D E+L L E +K P + + RY++ HL
Sbjct: 1332 ALKAFFADLPDPLIPYSLHPELLEAAKIPDKTERLHALKEIVKKFHPVNYDVFRYVITHL 1391
Query: 924 KRVTLHEKENLMNAENLGIVFGPTLMRSPELDAMAALNDIRY*RLVVELLIKNETFYF 1097
RV+ K NLM A+NL I F PTLMR P+ + L+ + + VVE I+ F+F
Sbjct: 1392 NRVSQQHKINLMTADNLSICFWPTLMR-PDFENREFLSTTKIHQSVVETFIQQCQFFF 1448
>ref|NP_078881.3| rho GTPase-activating protein 10 [Homo sapiens].
Length = 786
Score = 129 bits (325), Expect = 4e-30
Identities = 71/178 (39%), Positives = 108/178 (60%), Gaps = 2/178 (1%)
Frame = +3
Query: 570 VVDMCIREIESRGLNSEGLYRVSGFSDLIEDV-KMAFD-RDGEKADISVNMYEDINIITG 743
++ CI +E+RG+N +GLYRV G S ++ + M D + + D+ + ++ IT
Sbjct: 398 IIRKCISAVETRGINDQGLYRVVGVSSKVQRLLSMLMDVKTCNEVDLENSADWEVKTITS 457
Query: 744 ALKLYFRDLPIPLITYDAYPKFIESAKIMDPDEQLETLHEALKLLPPAHCETLRYLMAHL 923
ALK Y R LP PL+TY+ + FI AK P+ ++ +H + LP + E L L+ HL
Sbjct: 458 ALKQYLRSLPEPLMTYELHGDFIVPAKSGSPESRVNAIHFLVHKLPEKNKEMLDILVKHL 517
Query: 924 KRVTLHEKENLMNAENLGIVFGPTLMRSPELDAMAALNDIRY*RLVVELLIKNETFYF 1097
V+ H K+NLM NLG+VFGPTLMR P+ + +AAL D+++ +VVE+LI+N F
Sbjct: 518 TNVSNHSKQNLMTVANLGVVFGPTLMR-PQEETVAALMDLKFQNIVVEILIENHEKIF 574
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 39,564,408
Number of extensions: 999408
Number of successful extensions: 4455
Number of sequences better than 1.0e-05: 140
Number of HSP's gapped: 4308
Number of HSP's successfully gapped: 155
Length of query: 365
Length of database: 18,297,164
Length adjustment: 104
Effective length of query: 261
Effective length of database: 14,868,908
Effective search space: 3880784988
Effective search space used: 3880784988
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-004106
(1097 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_786928.2| N-chimaerin isoform 1 [Mus musculus]. 653 0.0
Alignment gi|NP_001106717.2| N-chimaerin isoform 3 [Mus musculus]. 550 e-156
Alignment gi|NP_001160076.1| N-chimaerin isoform 5 [Mus musculus]. 494 e-140
Alignment gi|NP_076032.2| beta-chimaerin isoform 1 [Mus musculus]. 486 e-137
Alignment gi|NP_001157112.1| beta-chimaerin isoform 2 [Mus musculus]. 447 e-126
Alignment gi|NP_083992.1| N-chimaerin isoform 2 [Mus musculus]. 404 e-113
Alignment gi|NP_001160075.1| N-chimaerin isoform 4 [Mus musculus]. 390 e-109
Alignment gi|NP_001192165.1| rho GTPase-activating protein 27 isoform 1 [... 139 4e-33
Alignment gi|NP_598476.2| rho GTPase-activating protein 27 isoform 2 [Mus... 139 4e-33
Alignment gi|NP_766606.2| myosin-IXa [Mus musculus]. 132 5e-31
>ref|NP_786928.2| N-chimaerin isoform 1 [Mus musculus].
Length = 334
Score = 653 bits (1684), Expect = 0.0
Identities = 321/334 (96%), Positives = 324/334 (97%)
Frame = +3
Query: 96 MPSKESWSGRKTNRAPVHKSKQEGRQQDLLIAALGMKLGSQKSSVTIWQPLKLFAYSQLT 275
MPSKESWSGRK NRA VHK+K EGRQQ LLIAALGMKLGSQKSSVTIWQPLKLFAYSQLT
Sbjct: 1 MPSKESWSGRKANRATVHKAKPEGRQQGLLIAALGMKLGSQKSSVTIWQPLKLFAYSQLT 60
Query: 276 SLVRRATLKENEQIPKYEKVHNFKVHTFRGPHWCEYCANFMWGLIAQGVKCADCGLNVHK 455
SLVRRATLKENEQIPKYEKVHNFKVHTFRGPHWCEYCANFMWGLIAQGVKCADCGLNVHK
Sbjct: 61 SLVRRATLKENEQIPKYEKVHNFKVHTFRGPHWCEYCANFMWGLIAQGVKCADCGLNVHK 120
Query: 456 QCSKMVPNDCKPDLKHVKKVYSCDLTTLVKAHITKRPMVVDMCIREIESRGLNSEGLYRV 635
QCSKMVPNDCKPDLKHVKKVYSCDLTTLVKAHITKRPMVVDMCIREIESRGLNSEGLYRV
Sbjct: 121 QCSKMVPNDCKPDLKHVKKVYSCDLTTLVKAHITKRPMVVDMCIREIESRGLNSEGLYRV 180
Query: 636 SGFSDLIEDVKMAFDRDGEKADISVNMYEDINIITGALKLYFRDLPIPLITYDAYPKFIE 815
SGFSDLIEDVKMAFDRDGEKADISVNMYEDINIITGALKLYFRDLPIPLITYDAYPKFIE
Sbjct: 181 SGFSDLIEDVKMAFDRDGEKADISVNMYEDINIITGALKLYFRDLPIPLITYDAYPKFIE 240
Query: 816 SAKIMDPDEQLETLHEALKLLPPAHCETLRYLMAHLKRVTLHEKENLMNAENLGIVFGPT 995
SAKIMDPDEQLETLHEAL+ LPPAHCETLRYLMAHLKRVTLHEKENLM+AENLGIVFGPT
Sbjct: 241 SAKIMDPDEQLETLHEALRSLPPAHCETLRYLMAHLKRVTLHEKENLMSAENLGIVFGPT 300
Query: 996 LMRSPELDAMAALNDIRY*RLVVELLIKNETFYF 1097
LMRSPELD MAALNDIRY RLVVELLIKNE F
Sbjct: 301 LMRSPELDPMAALNDIRYQRLVVELLIKNEDILF 334
>ref|NP_001106717.2| N-chimaerin isoform 3 [Mus musculus].
Length = 459
Score = 550 bits (1416), Expect = e-156
Identities = 268/277 (96%), Positives = 271/277 (97%)
Frame = +3
Query: 267 QLTSLVRRATLKENEQIPKYEKVHNFKVHTFRGPHWCEYCANFMWGLIAQGVKCADCGLN 446
+LTSLVRRATLKENEQIPKYEKVHNFKVHTFRGPHWCEYCANFMWGLIAQGVKCADCGLN
Sbjct: 183 RLTSLVRRATLKENEQIPKYEKVHNFKVHTFRGPHWCEYCANFMWGLIAQGVKCADCGLN 242
Query: 447 VHKQCSKMVPNDCKPDLKHVKKVYSCDLTTLVKAHITKRPMVVDMCIREIESRGLNSEGL 626
VHKQCSKMVPNDCKPDLKHVKKVYSCDLTTLVKAHITKRPMVVDMCIREIESRGLNSEGL
Sbjct: 243 VHKQCSKMVPNDCKPDLKHVKKVYSCDLTTLVKAHITKRPMVVDMCIREIESRGLNSEGL 302
Query: 627 YRVSGFSDLIEDVKMAFDRDGEKADISVNMYEDINIITGALKLYFRDLPIPLITYDAYPK 806
YRVSGFSDLIEDVKMAFDRDGEKADISVNMYEDINIITGALKLYFRDLPIPLITYDAYPK
Sbjct: 303 YRVSGFSDLIEDVKMAFDRDGEKADISVNMYEDINIITGALKLYFRDLPIPLITYDAYPK 362
Query: 807 FIESAKIMDPDEQLETLHEALKLLPPAHCETLRYLMAHLKRVTLHEKENLMNAENLGIVF 986
FIESAKIMDPDEQLETLHEAL+ LPPAHCETLRYLMAHLKRVTLHEKENLM+AENLGIVF
Sbjct: 363 FIESAKIMDPDEQLETLHEALRSLPPAHCETLRYLMAHLKRVTLHEKENLMSAENLGIVF 422
Query: 987 GPTLMRSPELDAMAALNDIRY*RLVVELLIKNETFYF 1097
GPTLMRSPELD MAALNDIRY RLVVELLIKNE F
Sbjct: 423 GPTLMRSPELDPMAALNDIRYQRLVVELLIKNEDILF 459
>ref|NP_001160076.1| N-chimaerin isoform 5 [Mus musculus].
Length = 276
Score = 494 bits (1271), Expect = e-140
Identities = 262/334 (78%), Positives = 265/334 (79%)
Frame = +3
Query: 96 MPSKESWSGRKTNRAPVHKSKQEGRQQDLLIAALGMKLGSQKSSVTIWQPLKLFAYSQLT 275
MPSKESWSGRK NRA VHK+K EGRQQ LLIAALGMKLGSQKSSVTIWQPLKLFAYSQLT
Sbjct: 1 MPSKESWSGRKANRATVHKAKPEGRQQGLLIAALGMKLGSQKSSVTIWQPLKLFAYSQLT 60
Query: 276 SLVRRATLKENEQIPKYEKVHNFKVHTFRGPHWCEYCANFMWGLIAQGVKCADCGLNVHK 455
SLVRRATLKENEQIPKYEKVHNFKVHTFRGPHWCEYCANFMWGLIAQGVKCA GLN
Sbjct: 61 SLVRRATLKENEQIPKYEKVHNFKVHTFRGPHWCEYCANFMWGLIAQGVKCA--GLN--- 115
Query: 456 QCSKMVPNDCKPDLKHVKKVYSCDLTTLVKAHITKRPMVVDMCIREIESRGLNSEGLYRV 635
S GL YRV
Sbjct: 116 ------------------------------------------------SEGL-----YRV 122
Query: 636 SGFSDLIEDVKMAFDRDGEKADISVNMYEDINIITGALKLYFRDLPIPLITYDAYPKFIE 815
SGFSDLIEDVKMAFDRDGEKADISVNMYEDINIITGALKLYFRDLPIPLITYDAYPKFIE
Sbjct: 123 SGFSDLIEDVKMAFDRDGEKADISVNMYEDINIITGALKLYFRDLPIPLITYDAYPKFIE 182
Query: 816 SAKIMDPDEQLETLHEALKLLPPAHCETLRYLMAHLKRVTLHEKENLMNAENLGIVFGPT 995
SAKIMDPDEQLETLHEAL+ LPPAHCETLRYLMAHLKRVTLHEKENLM+AENLGIVFGPT
Sbjct: 183 SAKIMDPDEQLETLHEALRSLPPAHCETLRYLMAHLKRVTLHEKENLMSAENLGIVFGPT 242
Query: 996 LMRSPELDAMAALNDIRY*RLVVELLIKNETFYF 1097
LMRSPELD MAALNDIRY RLVVELLIKNE F
Sbjct: 243 LMRSPELDPMAALNDIRYQRLVVELLIKNEDILF 276
>ref|NP_076032.2| beta-chimaerin isoform 1 [Mus musculus].
Length = 332
Score = 486 bits (1251), Expect = e-137
Identities = 236/334 (70%), Positives = 275/334 (82%)
Frame = +3
Query: 96 MPSKESWSGRKTNRAPVHKSKQEGRQQDLLIAALGMKLGSQKSSVTIWQPLKLFAYSQLT 275
M S+E W + A V KSK ++Q+LL A G+K+G + +W PLKLFA SQ++
Sbjct: 1 MCSQELWLENERKCAMVRKSKPSRKRQELLAIAFGVKVGLKGGF--LWSPLKLFACSQIS 58
Query: 276 SLVRRATLKENEQIPKYEKVHNFKVHTFRGPHWCEYCANFMWGLIAQGVKCADCGLNVHK 455
SLVRRA L N+ YEK HNFKVHTFRGPHWCEYCANFMWGLIAQGV+C+DCGLNVHK
Sbjct: 59 SLVRRAALTHNDNHFNYEKTHNFKVHTFRGPHWCEYCANFMWGLIAQGVRCSDCGLNVHK 118
Query: 456 QCSKMVPNDCKPDLKHVKKVYSCDLTTLVKAHITKRPMVVDMCIREIESRGLNSEGLYRV 635
QCSK VPNDC+PDLK +KKVY CDLTTLVKAH T+RPMVVD+CIREIE+RGL SEGLYRV
Sbjct: 119 QCSKHVPNDCQPDLKRIKKVYCCDLTTLVKAHNTQRPMVVDICIREIEARGLKSEGLYRV 178
Query: 636 SGFSDLIEDVKMAFDRDGEKADISVNMYEDINIITGALKLYFRDLPIPLITYDAYPKFIE 815
SGF++ IEDVKMAFDRDGEKADIS N+Y DINIITGALKLYFRDLPIP+ITYD Y KFIE
Sbjct: 179 SGFTEHIEDVKMAFDRDGEKADISANIYPDINIITGALKLYFRDLPIPIITYDTYSKFIE 238
Query: 816 SAKIMDPDEQLETLHEALKLLPPAHCETLRYLMAHLKRVTLHEKENLMNAENLGIVFGPT 995
+AKI + DE+LE +HE L LLPPAH ETLRYLM HLK+VT++EK+NLMNAENLGIVFGPT
Sbjct: 239 AAKISNADERLEAVHEVLMLLPPAHYETLRYLMIHLKKVTMNEKDNLMNAENLGIVFGPT 298
Query: 996 LMRSPELDAMAALNDIRY*RLVVELLIKNETFYF 1097
LMR PE + L+D+RY +L+V++LI+NE F
Sbjct: 299 LMRPPEDSTLTTLHDMRYQKLIVQILIENEDVLF 332
>ref|NP_001157112.1| beta-chimaerin isoform 2 [Mus musculus].
Length = 468
Score = 447 bits (1150), Expect = e-126
Identities = 211/277 (76%), Positives = 242/277 (87%)
Frame = +3
Query: 267 QLTSLVRRATLKENEQIPKYEKVHNFKVHTFRGPHWCEYCANFMWGLIAQGVKCADCGLN 446
+++SLVRRA L N+ YEK HNFKVHTFRGPHWCEYCANFMWGLIAQGV+C+DCGLN
Sbjct: 192 KISSLVRRAALTHNDNHFNYEKTHNFKVHTFRGPHWCEYCANFMWGLIAQGVRCSDCGLN 251
Query: 447 VHKQCSKMVPNDCKPDLKHVKKVYSCDLTTLVKAHITKRPMVVDMCIREIESRGLNSEGL 626
VHKQCSK VPNDC+PDLK +KKVY CDLTTLVKAH T+RPMVVD+CIREIE+RGL SEGL
Sbjct: 252 VHKQCSKHVPNDCQPDLKRIKKVYCCDLTTLVKAHNTQRPMVVDICIREIEARGLKSEGL 311
Query: 627 YRVSGFSDLIEDVKMAFDRDGEKADISVNMYEDINIITGALKLYFRDLPIPLITYDAYPK 806
YRVSGF++ IEDVKMAFDRDGEKADIS N+Y DINIITGALKLYFRDLPIP+ITYD Y K
Sbjct: 312 YRVSGFTEHIEDVKMAFDRDGEKADISANIYPDINIITGALKLYFRDLPIPIITYDTYSK 371
Query: 807 FIESAKIMDPDEQLETLHEALKLLPPAHCETLRYLMAHLKRVTLHEKENLMNAENLGIVF 986
FIE+AKI + DE+LE +HE L LLPPAH ETLRYLM HLK+VT++EK+NLMNAENLGIVF
Sbjct: 372 FIEAAKISNADERLEAVHEVLMLLPPAHYETLRYLMIHLKKVTMNEKDNLMNAENLGIVF 431
Query: 987 GPTLMRSPELDAMAALNDIRY*RLVVELLIKNETFYF 1097
GPTLMR PE + L+D+RY +L+V++LI+NE F
Sbjct: 432 GPTLMRPPEDSTLTTLHDMRYQKLIVQILIENEDVLF 468
>ref|NP_083992.1| N-chimaerin isoform 2 [Mus musculus].
Length = 210
Score = 404 bits (1039), Expect = e-113
Identities = 202/210 (96%), Positives = 204/210 (97%)
Frame = +3
Query: 468 MVPNDCKPDLKHVKKVYSCDLTTLVKAHITKRPMVVDMCIREIESRGLNSEGLYRVSGFS 647
MVPNDCKPDLKHVKKVYSCDLTTLVKAHITKRPMVVDMCIREIESRGLNSEGLYRVSGFS
Sbjct: 1 MVPNDCKPDLKHVKKVYSCDLTTLVKAHITKRPMVVDMCIREIESRGLNSEGLYRVSGFS 60
Query: 648 DLIEDVKMAFDRDGEKADISVNMYEDINIITGALKLYFRDLPIPLITYDAYPKFIESAKI 827
DLIEDVKMAFDRDGEKADISVNMYEDINIITGALKLYFRDLPIPLITYDAYPKFIESAKI
Sbjct: 61 DLIEDVKMAFDRDGEKADISVNMYEDINIITGALKLYFRDLPIPLITYDAYPKFIESAKI 120
Query: 828 MDPDEQLETLHEALKLLPPAHCETLRYLMAHLKRVTLHEKENLMNAENLGIVFGPTLMRS 1007
MDPDEQLETLHEAL+ LPPAHCETLRYLMAHLKRVTLHEKENLM+AENLGIVFGPTLMRS
Sbjct: 121 MDPDEQLETLHEALRSLPPAHCETLRYLMAHLKRVTLHEKENLMSAENLGIVFGPTLMRS 180
Query: 1008 PELDAMAALNDIRY*RLVVELLIKNETFYF 1097
PELD MAALNDIRY RLVVELLIKNE F
Sbjct: 181 PELDPMAALNDIRYQRLVVELLIKNEDILF 210
>ref|NP_001160075.1| N-chimaerin isoform 4 [Mus musculus].
Length = 401
Score = 390 bits (1003), Expect = e-109
Identities = 209/277 (75%), Positives = 212/277 (76%)
Frame = +3
Query: 267 QLTSLVRRATLKENEQIPKYEKVHNFKVHTFRGPHWCEYCANFMWGLIAQGVKCADCGLN 446
+LTSLVRRATLKENEQIPKYEKVHNFKVHTFRGPHWCEYCANFMWGLIAQGVKCA GLN
Sbjct: 183 RLTSLVRRATLKENEQIPKYEKVHNFKVHTFRGPHWCEYCANFMWGLIAQGVKCA--GLN 240
Query: 447 VHKQCSKMVPNDCKPDLKHVKKVYSCDLTTLVKAHITKRPMVVDMCIREIESRGLNSEGL 626
S GL
Sbjct: 241 ---------------------------------------------------SEGL----- 244
Query: 627 YRVSGFSDLIEDVKMAFDRDGEKADISVNMYEDINIITGALKLYFRDLPIPLITYDAYPK 806
YRVSGFSDLIEDVKMAFDRDGEKADISVNMYEDINIITGALKLYFRDLPIPLITYDAYPK
Sbjct: 245 YRVSGFSDLIEDVKMAFDRDGEKADISVNMYEDINIITGALKLYFRDLPIPLITYDAYPK 304
Query: 807 FIESAKIMDPDEQLETLHEALKLLPPAHCETLRYLMAHLKRVTLHEKENLMNAENLGIVF 986
FIESAKIMDPDEQLETLHEAL+ LPPAHCETLRYLMAHLKRVTLHEKENLM+AENLGIVF
Sbjct: 305 FIESAKIMDPDEQLETLHEALRSLPPAHCETLRYLMAHLKRVTLHEKENLMSAENLGIVF 364
Query: 987 GPTLMRSPELDAMAALNDIRY*RLVVELLIKNETFYF 1097
GPTLMRSPELD MAALNDIRY RLVVELLIKNE F
Sbjct: 365 GPTLMRSPELDPMAALNDIRYQRLVVELLIKNEDILF 401
>ref|NP_001192165.1| rho GTPase-activating protein 27 isoform 1 [Mus musculus].
Length = 869
Score = 139 bits (350), Expect = 4e-33
Identities = 72/189 (38%), Positives = 118/189 (62%)
Frame = +3
Query: 510 KVYSCDLTTLVKAHITKRPMVVDMCIREIESRGLNSEGLYRVSGFSDLIEDVKMAFDRDG 689
+V+ C L L + + P V CIR +E+RGL+ +GLYR+SG I+ ++ D D
Sbjct: 673 QVFGCALAQLCERERSPVPRFVQQCIRTVEARGLDIDGLYRISGNLATIQKLRYKVDHD- 731
Query: 690 EKADISVNMYEDINIITGALKLYFRDLPIPLITYDAYPKFIESAKIMDPDEQLETLHEAL 869
E+ D+ +ED+++ITGALKL+FR+LP PL + + +FI + K+ DP ++ + + +
Sbjct: 732 ERLDLDDGRWEDVHVITGALKLFFRELPEPLFPFSHFHQFIAAIKLQDPAQRSRCVRDLV 791
Query: 870 KLLPPAHCETLRYLMAHLKRVTLHEKENLMNAENLGIVFGPTLMRSPELDAMAALNDIRY 1049
+ LP + +TLR L+ HL RV H ++N M +N+ IVFGPTL+R PE++ + + +
Sbjct: 792 RTLPAPNQDTLRLLIQHLCRVIEHGEQNRMTVQNVAIVFGPTLLR-PEMEEASMPMTMVF 850
Query: 1050 *RLVVELLI 1076
VVEL++
Sbjct: 851 QNQVVELIL 859
>ref|NP_598476.2| rho GTPase-activating protein 27 isoform 2 [Mus musculus].
Length = 670
Score = 139 bits (350), Expect = 4e-33
Identities = 72/189 (38%), Positives = 118/189 (62%)
Frame = +3
Query: 510 KVYSCDLTTLVKAHITKRPMVVDMCIREIESRGLNSEGLYRVSGFSDLIEDVKMAFDRDG 689
+V+ C L L + + P V CIR +E+RGL+ +GLYR+SG I+ ++ D D
Sbjct: 474 QVFGCALAQLCERERSPVPRFVQQCIRTVEARGLDIDGLYRISGNLATIQKLRYKVDHD- 532
Query: 690 EKADISVNMYEDINIITGALKLYFRDLPIPLITYDAYPKFIESAKIMDPDEQLETLHEAL 869
E+ D+ +ED+++ITGALKL+FR+LP PL + + +FI + K+ DP ++ + + +
Sbjct: 533 ERLDLDDGRWEDVHVITGALKLFFRELPEPLFPFSHFHQFIAAIKLQDPAQRSRCVRDLV 592
Query: 870 KLLPPAHCETLRYLMAHLKRVTLHEKENLMNAENLGIVFGPTLMRSPELDAMAALNDIRY 1049
+ LP + +TLR L+ HL RV H ++N M +N+ IVFGPTL+R PE++ + + +
Sbjct: 593 RTLPAPNQDTLRLLIQHLCRVIEHGEQNRMTVQNVAIVFGPTLLR-PEMEEASMPMTMVF 651
Query: 1050 *RLVVELLI 1076
VVEL++
Sbjct: 652 QNQVVELIL 660
>ref|NP_766606.2| myosin-IXa [Mus musculus].
Length = 2631
Score = 132 bits (332), Expect = 5e-31
Identities = 81/268 (30%), Positives = 138/268 (51%), Gaps = 4/268 (1%)
Frame = +3
Query: 285 RRATLKENEQIPKYEKVHNFKVHTFRGPHWCEYCANFMWGLIAQGVKCADCGLNVHKQCS 464
R+ K+ + + H FK + P +CEYC++ +W ++ + C C HK+C
Sbjct: 2056 RKKRRKKETDLVEEHNGHIFKATQYSIPTYCEYCSSLIW-IMDRASVCKLCKYACHKKCC 2114
Query: 465 KMVPNDC--KPDLKHVKKVYSCDLTTLVKAHITKRPMVVDMCIREIESRGLNSEGLYRVS 638
C K D + + + +L+ L P+VV+ I IE GL +EG+YR S
Sbjct: 2115 LKTTAKCSKKYDPELSSRQFGVELSRLTSEDRAV-PLVVEKLINYIEMHGLYTEGIYRKS 2173
Query: 639 GFSDLIEDVKMAFDRDGEKADISVNMYE-DINIITGALKLYFRDLPIPLITYDAYPKFIE 815
G ++ I++++ D D E SVN+ + +I++I K + RDLP PL+T++ Y +F+
Sbjct: 2174 GSTNKIKELRQGLDTDAE----SVNLDDYNIHVIASVFKQWLRDLPNPLMTFELYEEFLR 2229
Query: 816 SAKIMDPDEQLETLHEALKLLPPAHCETLRYLMAHLKRVTLHEKENLMNAENLGIVFGPT 995
+ + + E + ++ + L H TL L+ HL R+ L E N M+A L IVF P
Sbjct: 2230 AMGLQERKETIRGVYSVIDQLSRTHLNTLERLIFHLVRIALQEDTNRMSANALAIVFAPC 2289
Query: 996 LMRSPE-LDAMAALNDIRY*RLVVELLI 1076
++R P+ D + ++ DI VEL++
Sbjct: 2290 ILRCPDTTDPLQSVQDISKTTTCVELIV 2317
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 33,831,601
Number of extensions: 854048
Number of successful extensions: 3397
Number of sequences better than 1.0e-05: 122
Number of HSP's gapped: 3275
Number of HSP's successfully gapped: 135
Length of query: 365
Length of database: 15,617,559
Length adjustment: 103
Effective length of query: 262
Effective length of database: 12,523,851
Effective search space: 3281248962
Effective search space used: 3281248962
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-004106
(1097 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_003361237.1| PREDICTED: n-chimaerin-like [Sus scrofa]. 647 0.0
Alignment gi|XP_003134866.2| PREDICTED: beta-chimaerin-like isoform 1 [Su... 480 e-136
Alignment gi|XP_003360227.1| PREDICTED: beta-chimaerin-like isoform 2 [Su... 418 e-117
Alignment gi|XP_003360229.1| PREDICTED: beta-chimaerin-like isoform 4 [Su... 380 e-106
Alignment gi|XP_003360228.1| PREDICTED: beta-chimaerin-like isoform 3 [Su... 247 9e-66
Alignment gi|XP_003353513.1| PREDICTED: myosin-IXa-like [Sus scrofa]. 135 3e-32
Alignment gi|XP_003358061.1| PREDICTED: rho GTPase-activating protein 27-... 132 3e-31
Alignment gi|XP_003128568.2| PREDICTED: LOW QUALITY PROTEIN: rho GTPase-a... 131 8e-31
Alignment gi|XP_003359223.1| PREDICTED: breakpoint cluster region protein... 129 4e-30
Alignment gi|XP_001925930.2| PREDICTED: breakpoint cluster region protein... 129 4e-30
>ref|XP_003361237.1| PREDICTED: n-chimaerin-like [Sus scrofa].
Length = 334
Score = 647 bits (1668), Expect = 0.0
Identities = 321/334 (96%), Positives = 321/334 (96%)
Frame = +3
Query: 96 MPSKESWSGRKTNRAPVHKSKQEGRQQDLLIAALGMKLGSQKSSVTIWQPLKLFAYSQLT 275
MPSKESWSGRKTNRAPVHKSKQEGRQQDLLIAALGMKLGSQKSSVTIWQPLKLFAYSQLT
Sbjct: 1 MPSKESWSGRKTNRAPVHKSKQEGRQQDLLIAALGMKLGSQKSSVTIWQPLKLFAYSQLT 60
Query: 276 SLVRRATLKENEQIPKYEKVHNFKVHTFRGPHWCEYCANFMWGLIAQGVKCADCGLNVHK 455
SLVRRATLKENEQIPKYEKVHNFKVHTFRGPHWCEYCANFMWGLIAQGVKCADCGLNVHK
Sbjct: 61 SLVRRATLKENEQIPKYEKVHNFKVHTFRGPHWCEYCANFMWGLIAQGVKCADCGLNVHK 120
Query: 456 QCSKMVPNDCKPDLKHVKKVYSCDLTTLVKAHITKRPMVVDMCIREIESRGLNSEGLYRV 635
QCSK LKHVKKVYSCDLTTLVKAHITKRPMVVDMCIREIESRGLNSEGLYRV
Sbjct: 121 QCSKXXXXXXXXXLKHVKKVYSCDLTTLVKAHITKRPMVVDMCIREIESRGLNSEGLYRV 180
Query: 636 SGFSDLIEDVKMAFDRDGEKADISVNMYEDINIITGALKLYFRDLPIPLITYDAYPKFIE 815
SGFSDLIEDVKMAFDRDGEKADISVNMYEDINIITGALKLYFRDLPIPLITYDAYPKFIE
Sbjct: 181 SGFSDLIEDVKMAFDRDGEKADISVNMYEDINIITGALKLYFRDLPIPLITYDAYPKFIE 240
Query: 816 SAKIMDPDEQLETLHEALKLLPPAHCETLRYLMAHLKRVTLHEKENLMNAENLGIVFGPT 995
SAKIMDPDEQLETLHEALKLLPPAHCETLRYLMAHLKRVTLHEKENLMNAENLGIVFGPT
Sbjct: 241 SAKIMDPDEQLETLHEALKLLPPAHCETLRYLMAHLKRVTLHEKENLMNAENLGIVFGPT 300
Query: 996 LMRSPELDAMAALNDIRY*RLVVELLIKNETFYF 1097
LMRSPELDAMAALNDIRY RLVVELLIKNE F
Sbjct: 301 LMRSPELDAMAALNDIRYQRLVVELLIKNEDILF 334
>ref|XP_003134866.2| PREDICTED: beta-chimaerin-like isoform 1 [Sus scrofa].
Length = 332
Score = 480 bits (1236), Expect = e-136
Identities = 234/334 (70%), Positives = 274/334 (82%)
Frame = +3
Query: 96 MPSKESWSGRKTNRAPVHKSKQEGRQQDLLIAALGMKLGSQKSSVTIWQPLKLFAYSQLT 275
M S+E W + A V K KQ ++Q+LL ALG+K+G + +W PLKLFA Q++
Sbjct: 1 MFSEEMWPENEKKCAVVRKPKQGRKRQELLAVALGVKVGVRGGF--LWPPLKLFACPQIS 58
Query: 276 SLVRRATLKENEQIPKYEKVHNFKVHTFRGPHWCEYCANFMWGLIAQGVKCADCGLNVHK 455
SLVRRA L ++ YEK HNFKVHTFRGPHWCEYCANFMWGLIAQGV+C+DCGLNVHK
Sbjct: 59 SLVRRAALTHHDNHFNYEKTHNFKVHTFRGPHWCEYCANFMWGLIAQGVRCSDCGLNVHK 118
Query: 456 QCSKMVPNDCKPDLKHVKKVYSCDLTTLVKAHITKRPMVVDMCIREIESRGLNSEGLYRV 635
QCSK VPNDC+PDLK +KKVY CDLTTLVKAH T+RPMVVD+CIREIE+RGL SEGLYRV
Sbjct: 119 QCSKHVPNDCQPDLKRIKKVYCCDLTTLVKAHNTQRPMVVDICIREIEARGLKSEGLYRV 178
Query: 636 SGFSDLIEDVKMAFDRDGEKADISVNMYEDINIITGALKLYFRDLPIPLITYDAYPKFIE 815
SGF++ IEDVKMAFDRDGEKADIS ++Y DINIITGALKLYFRDLPIP+ITYD Y KFIE
Sbjct: 179 SGFTEHIEDVKMAFDRDGEKADISASIYPDINIITGALKLYFRDLPIPVITYDTYSKFIE 238
Query: 816 SAKIMDPDEQLETLHEALKLLPPAHCETLRYLMAHLKRVTLHEKENLMNAENLGIVFGPT 995
+AKI + DE+LE +HE L LLPPAH ETLRYLM HLK+VTL+EK+N MNAENLGIVFGPT
Sbjct: 239 AAKISNVDERLEAVHEVLMLLPPAHYETLRYLMIHLKKVTLNEKDNFMNAENLGIVFGPT 298
Query: 996 LMRSPELDAMAALNDIRY*RLVVELLIKNETFYF 1097
LMR PE + L+D+RY +L+V++LI+NE F
Sbjct: 299 LMRPPEDSTLTTLHDMRYQKLIVQILIENEDVLF 332
>ref|XP_003360227.1| PREDICTED: beta-chimaerin-like isoform 2 [Sus scrofa].
Length = 287
Score = 418 bits (1075), Expect = e-117
Identities = 211/334 (63%), Positives = 244/334 (73%)
Frame = +3
Query: 96 MPSKESWSGRKTNRAPVHKSKQEGRQQDLLIAALGMKLGSQKSSVTIWQPLKLFAYSQLT 275
M S+E W + A V K KQ ++Q+LL ALG+K
Sbjct: 1 MFSEEMWPENEKKCAVVRKPKQGRKRQELLAVALGVK----------------------- 37
Query: 276 SLVRRATLKENEQIPKYEKVHNFKVHTFRGPHWCEYCANFMWGLIAQGVKCADCGLNVHK 455
VHTFRGPHWCEYCANFMWGLIAQGV+C+DCGLNVHK
Sbjct: 38 ------------------------VHTFRGPHWCEYCANFMWGLIAQGVRCSDCGLNVHK 73
Query: 456 QCSKMVPNDCKPDLKHVKKVYSCDLTTLVKAHITKRPMVVDMCIREIESRGLNSEGLYRV 635
QCSK VPNDC+PDLK +KKVY CDLTTLVKAH T+RPMVVD+CIREIE+RGL SEGLYRV
Sbjct: 74 QCSKHVPNDCQPDLKRIKKVYCCDLTTLVKAHNTQRPMVVDICIREIEARGLKSEGLYRV 133
Query: 636 SGFSDLIEDVKMAFDRDGEKADISVNMYEDINIITGALKLYFRDLPIPLITYDAYPKFIE 815
SGF++ IEDVKMAFDRDGEKADIS ++Y DINIITGALKLYFRDLPIP+ITYD Y KFIE
Sbjct: 134 SGFTEHIEDVKMAFDRDGEKADISASIYPDINIITGALKLYFRDLPIPVITYDTYSKFIE 193
Query: 816 SAKIMDPDEQLETLHEALKLLPPAHCETLRYLMAHLKRVTLHEKENLMNAENLGIVFGPT 995
+AKI + DE+LE +HE L LLPPAH ETLRYLM HLK+VTL+EK+N MNAENLGIVFGPT
Sbjct: 194 AAKISNVDERLEAVHEVLMLLPPAHYETLRYLMIHLKKVTLNEKDNFMNAENLGIVFGPT 253
Query: 996 LMRSPELDAMAALNDIRY*RLVVELLIKNETFYF 1097
LMR PE + L+D+RY +L+V++LI+NE F
Sbjct: 254 LMRPPEDSTLTTLHDMRYQKLIVQILIENEDVLF 287
>ref|XP_003360229.1| PREDICTED: beta-chimaerin-like isoform 4 [Sus scrofa].
Length = 286
Score = 380 bits (976), Expect = e-106
Identities = 195/334 (58%), Positives = 232/334 (69%)
Frame = +3
Query: 96 MPSKESWSGRKTNRAPVHKSKQEGRQQDLLIAALGMKLGSQKSSVTIWQPLKLFAYSQLT 275
M S+E W + A V K KQ ++Q+LL ALG+K+G + +W PLKLFA Q++
Sbjct: 1 MFSEEMWPENEKKCAVVRKPKQGRKRQELLAVALGVKVGVRGGF--LWPPLKLFACPQIS 58
Query: 276 SLVRRATLKENEQIPKYEKVHNFKVHTFRGPHWCEYCANFMWGLIAQGVKCADCGLNVHK 455
SLVRRA L ++ YEK HNFKVHTFRGPHWCEYCANFMWGLIAQGV+C+DCGLNVHK
Sbjct: 59 SLVRRAALTHHDNHFNYEKTHNFKVHTFRGPHWCEYCANFMWGLIAQGVRCSDCGLNVHK 118
Query: 456 QCSKMVPNDCKPDLKHVKKVYSCDLTTLVKAHITKRPMVVDMCIREIESRGLNSEGLYRV 635
QCSK VPNDC+PDLK +KKVY CDLTTLVKAH T+RPMVVD+CIREIE+RGL SEGLYRV
Sbjct: 119 QCSKHVPNDCQPDLKRIKKVYCCDLTTLVKAHNTQRPMVVDICIREIEARGLKSEGLYRV 178
Query: 636 SGFSDLIEDVKMAFDRDGEKADISVNMYEDINIITGALKLYFRDLPIPLITYDAYPKFIE 815
SGF++ IEDVKMAFDR+
Sbjct: 179 SGFTEHIEDVKMAFDRE------------------------------------------- 195
Query: 816 SAKIMDPDEQLETLHEALKLLPPAHCETLRYLMAHLKRVTLHEKENLMNAENLGIVFGPT 995
I + DE+LE +HE L LLPPAH ETLRYLM HLK+VTL+EK+N MNAENLGIVFGPT
Sbjct: 196 ---ISNVDERLEAVHEVLMLLPPAHYETLRYLMIHLKKVTLNEKDNFMNAENLGIVFGPT 252
Query: 996 LMRSPELDAMAALNDIRY*RLVVELLIKNETFYF 1097
LMR PE + L+D+RY +L+V++LI+NE F
Sbjct: 253 LMRPPEDSTLTTLHDMRYQKLIVQILIENEDVLF 286
>ref|XP_003360228.1| PREDICTED: beta-chimaerin-like isoform 3 [Sus scrofa].
Length = 274
Score = 247 bits (630), Expect = 9e-66
Identities = 127/209 (60%), Positives = 154/209 (73%), Gaps = 8/209 (3%)
Frame = +3
Query: 495 LKHVKKVYSCDLTTLVKAHITKRPMVVDMCI--------REIESRGLNSEGLYRVSGFSD 650
L H ++ + T K H + P + C + + GL SEGLYRVSGF++
Sbjct: 66 LTHHDNHFNYEKTHNFKVHTFRGPHWCEYCANFMWGLIAQGVRCSGLKSEGLYRVSGFTE 125
Query: 651 LIEDVKMAFDRDGEKADISVNMYEDINIITGALKLYFRDLPIPLITYDAYPKFIESAKIM 830
IEDVKMAFDRDGEKADIS ++Y DINIITGALKLYFRDLPIP+ITYD Y KFIE+AKI
Sbjct: 126 HIEDVKMAFDRDGEKADISASIYPDINIITGALKLYFRDLPIPVITYDTYSKFIEAAKIS 185
Query: 831 DPDEQLETLHEALKLLPPAHCETLRYLMAHLKRVTLHEKENLMNAENLGIVFGPTLMRSP 1010
+ DE+LE +HE L LLPPAH ETLRYLM HLK+VTL+EK+N MNAENLGIVFGPTLMR P
Sbjct: 186 NVDERLEAVHEVLMLLPPAHYETLRYLMIHLKKVTLNEKDNFMNAENLGIVFGPTLMRPP 245
Query: 1011 ELDAMAALNDIRY*RLVVELLIKNETFYF 1097
E + L+D+RY +L+V++LI+NE F
Sbjct: 246 EDSTLTTLHDMRYQKLIVQILIENEDVLF 274
Score = 134 bits (338), Expect = 7e-32
Identities = 65/112 (58%), Positives = 80/112 (71%)
Frame = +3
Query: 96 MPSKESWSGRKTNRAPVHKSKQEGRQQDLLIAALGMKLGSQKSSVTIWQPLKLFAYSQLT 275
M S+E W + A V K KQ ++Q+LL ALG+K+G + +W PLKLFA Q++
Sbjct: 1 MFSEEMWPENEKKCAVVRKPKQGRKRQELLAVALGVKVGVRGGF--LWPPLKLFACPQIS 58
Query: 276 SLVRRATLKENEQIPKYEKVHNFKVHTFRGPHWCEYCANFMWGLIAQGVKCA 431
SLVRRA L ++ YEK HNFKVHTFRGPHWCEYCANFMWGLIAQGV+C+
Sbjct: 59 SLVRRAALTHHDNHFNYEKTHNFKVHTFRGPHWCEYCANFMWGLIAQGVRCS 110
>ref|XP_003353513.1| PREDICTED: myosin-IXa-like [Sus scrofa].
Length = 1736
Score = 135 bits (341), Expect = 3e-32
Identities = 82/268 (30%), Positives = 141/268 (52%), Gaps = 4/268 (1%)
Frame = +3
Query: 285 RRATLKENEQIPKYEKVHNFKVHTFRGPHWCEYCANFMWGLIAQGVKCADCGLNVHKQCS 464
R+ K+ + + H FK + P +CEYC++ +W ++ + C C HK+C
Sbjct: 1429 RKKRRKKETDLVEEHNGHIFKATQYSIPTYCEYCSSLIW-IMDRASVCKLCKYACHKKCC 1487
Query: 465 KMVPNDC--KPDLKHVKKVYSCDLTTLVKAHITKRPMVVDMCIREIESRGLNSEGLYRVS 638
C K D + + + +L+ L T P+VV+ I IE GL +EG+YR S
Sbjct: 1488 LKTTAKCSKKYDPELSSRQFGVELSRLTSEDRTV-PLVVEKLINYIEMHGLYTEGIYRKS 1546
Query: 639 GFSDLIEDVKMAFDRDGEKADISVNMYE-DINIITGALKLYFRDLPIPLITYDAYPKFIE 815
G ++ I++++ + D D E SVN+ + +I++I K + RDLP PL+T++ Y +F+
Sbjct: 1547 GSTNKIKELRQSLDTDAE----SVNLDDYNIHVIASVFKQWLRDLPNPLMTFELYEEFLR 1602
Query: 816 SAKIMDPDEQLETLHEALKLLPPAHCETLRYLMAHLKRVTLHEKENLMNAENLGIVFGPT 995
+ + + E + ++ + L H TL L+ HL R+ L E N M+A L IVF P
Sbjct: 1603 AMGLQERKETIRGVYSVIDQLSRTHLNTLERLIFHLVRIALQEDTNRMSANALAIVFAPC 1662
Query: 996 LMRSPE-LDAMAALNDIRY*RLVVELLI 1076
++R P+ +D + ++ DI VEL++
Sbjct: 1663 ILRCPDTIDPLQSVQDISKTTTCVELIV 1690
Score = 99.0 bits (245), Expect = 4e-21
Identities = 54/159 (33%), Positives = 93/159 (58%), Gaps = 2/159 (1%)
Frame = +3
Query: 606 GLNSEGLYRVSGFSDLIEDVKMAFDRDGEKADISVNMYE-DINIITGALKLYFRDLPIPL 782
GL +EG+YR SG ++ I++++ + D D E SVN+ + +I++I K + RDLP PL
Sbjct: 3 GLYTEGIYRKSGSTNKIKELRQSLDTDAE----SVNLDDYNIHVIASVFKQWLRDLPNPL 58
Query: 783 ITYDAYPKFIESAKIMDPDEQLETLHEALKLLPPAHCETLRYLMAHLKRVTLHEKENLMN 962
+T++ Y +F+ + + + E + ++ + L H TL L+ HL R+ L E N M+
Sbjct: 59 MTFELYEEFLRAMGLQERKETIRGVYSVIDQLSRTHLNTLERLIFHLVRIALQEDTNRMS 118
Query: 963 AENLGIVFGPTLMRSPE-LDAMAALNDIRY*RLVVELLI 1076
A L IVF P ++R P+ +D + ++ DI VEL++
Sbjct: 119 ANALAIVFAPCILRCPDTIDPLQSVQDISKTTTCVELIV 157
>ref|XP_003358061.1| PREDICTED: rho GTPase-activating protein 27-like, partial [Sus
scrofa].
Length = 646
Score = 132 bits (333), Expect = 3e-31
Identities = 70/190 (36%), Positives = 117/190 (61%)
Frame = +3
Query: 510 KVYSCDLTTLVKAHITKRPMVVDMCIREIESRGLNSEGLYRVSGFSDLIEDVKMAFDRDG 689
+V+ C L L + + P V CIR +E+RGL +GLYR+SG I+ ++ D D
Sbjct: 450 QVFGCALAVLCERERSSVPRFVQQCIRAVEARGLEIDGLYRISGNLATIQKLRYKVDHD- 508
Query: 690 EKADISVNMYEDINIITGALKLYFRDLPIPLITYDAYPKFIESAKIMDPDEQLETLHEAL 869
E+ D+ +ED+++ITGALKL+FR+LP PL + + +FI + K+ D ++ + + +
Sbjct: 509 ERLDLDDGRWEDVHVITGALKLFFRELPEPLFPFCYFRQFITAIKLQDQAQRSRCVRDLV 568
Query: 870 KLLPPAHCETLRYLMAHLKRVTLHEKENLMNAENLGIVFGPTLMRSPELDAMAALNDIRY 1049
+ LP + +TLR L+ HL RV H ++N M+ +++ IVFGPTL+R PE + + + +
Sbjct: 569 RSLPAPNHDTLRLLIQHLCRVIEHGEQNRMSVQSVAIVFGPTLLR-PETEETSMPMTMVF 627
Query: 1050 *RLVVELLIK 1079
VVEL+++
Sbjct: 628 QNQVVELILQ 637
>ref|XP_003128568.2| PREDICTED: LOW QUALITY PROTEIN: rho GTPase-activating protein 5-like
[Sus scrofa].
Length = 1503
Score = 131 bits (329), Expect = 8e-31
Identities = 72/178 (40%), Positives = 106/178 (59%)
Frame = +3
Query: 564 PMVVDMCIREIESRGLNSEGLYRVSGFSDLIEDVKMAFDRDGEKADISVNMYEDINIITG 743
P+ V+ C+ IE GL +EGLYRVSG ++++ FD+D + +S+ + +N + G
Sbjct: 1276 PLFVEKCVEFIEDTGLCTEGLYRVSGNKTDQDNIQKQFDQDHNISLVSMEV--TVNAVAG 1333
Query: 744 ALKLYFRDLPIPLITYDAYPKFIESAKIMDPDEQLETLHEALKLLPPAHCETLRYLMAHL 923
ALK +F DLP PLI Y +P +E+AKI D E+L L E +K P + + RY++ HL
Sbjct: 1334 ALKAFFADLPDPLIPYSLHPDLLEAAKIPDKTERLHALKEIVKKFHPVNYDVFRYIITHL 1393
Query: 924 KRVTLHEKENLMNAENLGIVFGPTLMRSPELDAMAALNDIRY*RLVVELLIKNETFYF 1097
RV+ K NLM A+NL I F PTLMR P+ + L+ + + VVE I+ F+F
Sbjct: 1394 NRVSQQNKVNLMTADNLSICFWPTLMR-PDFENREFLSTTKIHQSVVETFIQQCQFFF 1450
>ref|XP_003359223.1| PREDICTED: breakpoint cluster region protein-like [Sus scrofa].
Length = 393
Score = 129 bits (323), Expect = 4e-30
Identities = 73/176 (41%), Positives = 100/176 (56%), Gaps = 1/176 (0%)
Frame = +3
Query: 513 VYSCDLTTLVKAHITKRPMVVDMCIREIESRGLNSEGLYRVSGFSDLIEDVKMAFDRDGE 692
V+ + + K +K P +V C+ EIE RG+ G+YRVSG + I+ +K AFD + +
Sbjct: 173 VFGVKIAVVTKRERSKVPYIVRQCVEEIERRGMEEVGIYRVSGVATDIQALKAAFDVNNK 232
Query: 693 KADISVNMYE-DINIITGALKLYFRDLPIPLITYDAYPKFIESAKIMDPDEQLETLHEAL 869
D+SV M E D+N I G LKLYFR+LP PL T + YP F E + DP + + L
Sbjct: 233 --DVSVMMSEMDVNAIAGTLKLYFRELPEPLFTDEFYPNFAEGIALSDPVAKESCMLNLL 290
Query: 870 KLLPPAHCETLRYLMAHLKRVTLHEKENLMNAENLGIVFGPTLMRSPELDAMAALN 1037
LP A+ T +L+ HLKRV E N M+ NL VFGPTL+R E ++ N
Sbjct: 291 LSLPEANLLTFLFLLDHLKRVAEKETVNKMSLHNLATVFGPTLLRPSEKESKLPAN 346
>ref|XP_001925930.2| PREDICTED: breakpoint cluster region protein [Sus scrofa].
Length = 826
Score = 129 bits (323), Expect = 4e-30
Identities = 73/176 (41%), Positives = 100/176 (56%), Gaps = 1/176 (0%)
Frame = +3
Query: 513 VYSCDLTTLVKAHITKRPMVVDMCIREIESRGLNSEGLYRVSGFSDLIEDVKMAFDRDGE 692
V+ + + K +K P +V C+ EIE RG+ G+YRVSG + I+ +K AFD + +
Sbjct: 606 VFGVKIAVVTKRERSKVPYIVRQCVEEIERRGMEEVGIYRVSGVATDIQALKAAFDVNNK 665
Query: 693 KADISVNMYE-DINIITGALKLYFRDLPIPLITYDAYPKFIESAKIMDPDEQLETLHEAL 869
D+SV M E D+N I G LKLYFR+LP PL T + YP F E + DP + + L
Sbjct: 666 --DVSVMMSEMDVNAIAGTLKLYFRELPEPLFTDEFYPNFAEGIALSDPVAKESCMLNLL 723
Query: 870 KLLPPAHCETLRYLMAHLKRVTLHEKENLMNAENLGIVFGPTLMRSPELDAMAALN 1037
LP A+ T +L+ HLKRV E N M+ NL VFGPTL+R E ++ N
Sbjct: 724 LSLPEANLLTFLFLLDHLKRVAEKETVNKMSLHNLATVFGPTLLRPSEKESKLPAN 779
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 24,540,603
Number of extensions: 611210
Number of successful extensions: 2514
Number of sequences better than 1.0e-05: 76
Number of HSP's gapped: 2437
Number of HSP's successfully gapped: 87
Length of query: 365
Length of database: 11,343,932
Length adjustment: 100
Effective length of query: 265
Effective length of database: 8,854,232
Effective search space: 2346371480
Effective search space used: 2346371480
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-004106
(1097 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|GL893835.2| Sus scrofa unplaced genomic scaffold ChrUScaf1720 692 0.0
Sscrofa_Chr15 692 0.0
Sscrofa_Chr07 515 e-143
Sscrofa_Chr01 178 4e-42
Sscrofa_Chr18 86 5e-14
Sscrofa_Chr12 62 7e-07
>gb|GL893835.2| Sus scrofa unplaced genomic scaffold ChrUScaf1720
Length = 98963
Score = 692 bits (349), Expect = 0.0
Identities = 349/349 (100%)
Strand = Plus / Minus
Query: 1 gtgctggctggcagaatgctcatttgttagctgaagagagttcatcgacagacatagatc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 90453 gtgctggctggcagaatgctcatttgttagctgaagagagttcatcgacagacatagatc 90394
Query: 61 aatataggttttctttatttcctgtgaattccaaaatgccatccaaagagtcttggtcgg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 90393 aatataggttttctttatttcctgtgaattccaaaatgccatccaaagagtcttggtcgg 90334
Query: 121 gtaggaaaactaatagagctccagtgcacaaatcaaaacaagagggccgtcagcaagatt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 90333 gtaggaaaactaatagagctccagtgcacaaatcaaaacaagagggccgtcagcaagatt 90274
Query: 181 tattgatagcagccttgggaatgaaactgggttctcaaaagtcgtctgtgacaatctggc 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 90273 tattgatagcagccttgggaatgaaactgggttctcaaaagtcgtctgtgacaatctggc 90214
Query: 241 aacctctgaaactctttgcttattcgcagttgacatcacttgttagaagagcaactctga 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 90213 aacctctgaaactctttgcttattcgcagttgacatcacttgttagaagagcaactctga 90154
Query: 301 aagaaaacgagcaaattccaaaatatgaaaaggttcacaatttcaaggt 349
|||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 90153 aagaaaacgagcaaattccaaaatatgaaaaggttcacaatttcaaggt 90105
Score = 317 bits (160), Expect = 7e-84
Identities = 170/172 (98%), Gaps = 1/172 (0%)
Strand = Plus / Minus
Query: 927 agagtgaccctccacgaaaaggagaacctgatgaatgcggagaaccttgggattgttttc 986
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 48801 agagtgaccctccacgaaaaggagaacctgatgaatgcggagaaccttgggattgttttc 48742
Query: 987 ggcccgaccctcatgaggtctccagagctcgatgccatggccgcactgaacgatatacga 1046
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 48741 ggcccgaccctcatgaggtctccagagctcgatgccatggccgcactgaacgatatacga 48682
Query: 1047 tactagagactggtggtagagctgcttatcaaaaacg-agacattttatttt 1097
||| ||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 48681 taccagagactggtggtagagctgcttatcaaaaacgaagacattttatttt 48630
Score = 278 bits (140), Expect = 6e-72
Identities = 140/140 (100%)
Strand = Plus / Minus
Query: 683 agatggtgagaaagcagatatttctgtgaacatgtatgaagatatcaacattatcactgg 742
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 54509 agatggtgagaaagcagatatttctgtgaacatgtatgaagatatcaacattatcactgg 54450
Query: 743 tgcgctgaaactgtacttcagggatttaccaattccactcatcacgtatgacgcctaccc 802
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 54449 tgcgctgaaactgtacttcagggatttaccaattccactcatcacgtatgacgcctaccc 54390
Query: 803 gaagttcatagagtctgcca 822
||||||||||||||||||||
Sbjct: 54389 gaagttcatagagtctgcca 54370
Score = 224 bits (113), Expect = 8e-56
Identities = 113/113 (100%)
Strand = Plus / Minus
Query: 496 tgaaacacgtcaagaaggtgtacagttgcgaccttacaacactcgtgaaagcgcacatca 555
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 58608 tgaaacacgtcaagaaggtgtacagttgcgaccttacaacactcgtgaaagcgcacatca 58549
Query: 556 ctaagcggcccatggtggtggacatgtgcatcagggagatcgagtctcgaggt 608
|||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 58548 ctaagcggcccatggtggtggacatgtgcatcagggagatcgagtctcgaggt 58496
Score = 172 bits (87), Expect = 3e-40
Identities = 87/87 (100%)
Strand = Plus / Minus
Query: 346 aggtccatacattcagagggccacactggtgtgaatactgtgccaacttcatgtgggggc 405
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 69419 aggtccatacattcagagggccacactggtgtgaatactgtgccaacttcatgtgggggc 69360
Query: 406 tcattgctcagggagtgaaatgtgcag 432
|||||||||||||||||||||||||||
Sbjct: 69359 tcattgctcagggagtgaaatgtgcag 69333
Score = 159 bits (80), Expect = 4e-36
Identities = 80/80 (100%)
Strand = Plus / Minus
Query: 605 aggtcttaattctgaaggactgtaccgagtttcaggatttagtgacctcattgaagatgt 664
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 57512 aggtcttaattctgaaggactgtaccgagtttcaggatttagtgacctcattgaagatgt 57453
Query: 665 caagatggcttttgacagag 684
||||||||||||||||||||
Sbjct: 57452 caagatggcttttgacagag 57433
Score = 73.8 bits (37), Expect = 2e-10
Identities = 37/37 (100%)
Strand = Plus / Minus
Query: 431 agattgtggtttgaatgttcataagcagtgttccaag 467
|||||||||||||||||||||||||||||||||||||
Sbjct: 58747 agattgtggtttgaatgttcataagcagtgttccaag 58711
>Sscrofa_Chr15
|| Length = 157681621
Score = 692 bits (349), Expect = 0.0
Identities = 349/349 (100%)
Strand = Plus / Minus
Query: 1 gtgctggctggcagaatgctcatttgttagctgaagagagttcatcgacagacatagatc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 90122913 gtgctggctggcagaatgctcatttgttagctgaagagagttcatcgacagacatagatc 90122854
Query: 61 aatataggttttctttatttcctgtgaattccaaaatgccatccaaagagtcttggtcgg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 90122853 aatataggttttctttatttcctgtgaattccaaaatgccatccaaagagtcttggtcgg 90122794
Query: 121 gtaggaaaactaatagagctccagtgcacaaatcaaaacaagagggccgtcagcaagatt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 90122793 gtaggaaaactaatagagctccagtgcacaaatcaaaacaagagggccgtcagcaagatt 90122734
Query: 181 tattgatagcagccttgggaatgaaactgggttctcaaaagtcgtctgtgacaatctggc 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 90122733 tattgatagcagccttgggaatgaaactgggttctcaaaagtcgtctgtgacaatctggc 90122674
Query: 241 aacctctgaaactctttgcttattcgcagttgacatcacttgttagaagagcaactctga 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 90122673 aacctctgaaactctttgcttattcgcagttgacatcacttgttagaagagcaactctga 90122614
Query: 301 aagaaaacgagcaaattccaaaatatgaaaaggttcacaatttcaaggt 349
|||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 90122613 aagaaaacgagcaaattccaaaatatgaaaaggttcacaatttcaaggt 90122565
Score = 317 bits (160), Expect = 7e-84
Identities = 170/172 (98%), Gaps = 1/172 (0%)
Strand = Plus / Minus
Query: 927 agagtgaccctccacgaaaaggagaacctgatgaatgcggagaaccttgggattgttttc 986
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 89940724 agagtgaccctccacgaaaaggagaacctgatgaatgcggagaaccttgggattgttttc 89940665
Query: 987 ggcccgaccctcatgaggtctccagagctcgatgccatggccgcactgaacgatatacga 1046
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 89940664 ggcccgaccctcatgaggtctccagagctcgatgccatggccgcactgaacgatatacga 89940605
Query: 1047 tactagagactggtggtagagctgcttatcaaaaacg-agacattttatttt 1097
||| ||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 89940604 taccagagactggtggtagagctgcttatcaaaaacgaagacattttatttt 89940553
Score = 210 bits (106), Expect = 1e-51
Identities = 106/106 (100%)
Strand = Plus / Minus
Query: 823 aaatcatggatcctgatgagcaattagaaaccctccatgaagcactgaaactgctgccgc 882
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 89942238 aaatcatggatcctgatgagcaattagaaaccctccatgaagcactgaaactgctgccgc 89942179
Query: 883 cagctcactgcgaaaccctccggtacctcatggcgcatctgaagag 928
||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 89942178 cagctcactgcgaaaccctccggtacctcatggcgcatctgaagag 89942133
>Sscrofa_Chr07
|| Length = 134764511
Score = 515 bits (260), Expect = e-143
Identities = 470/539 (87%), Gaps = 7/539 (1%)
Strand = Plus / Minus
Query: 269 gttgacatcacttgttagaagagcaactctgaaagaaaacgagcaaattccaaaatatga 328
||||||| ||||||||||||||||||||||||||||||| ||||||||||||| | |
Sbjct: 62820654 gttgacagcacttgttagaagagcaactctgaaagaaaatgagcaaattccaagaca--- 62820598
Query: 329 aaaggttcacaatttcaaggtccatacattcagagggccacactggtgtgaatactgtgc 388
|||||||| ||||| ||||||| || ||||||||||||||||| |||||||| |||
Sbjct: 62820597 ---ggttcacagtttcagagtccataaatacagagggccacactggtatgaatactatgc 62820541
Query: 389 caacttcatgtgggggctcattgctcagggagtgaaatgtgcagattgtggtttgaatgt 448
|| |||||||| |||||||||||| |||||||||||||| |||||||||||||||||||
Sbjct: 62820540 cagcttcatgttagggctcattgcttagggagtgaaatgtacagattgtggtttgaatgt 62820481
Query: 449 tcataagcagtgttccaagatggtcccaaatgactgtaagccagacttgaaacacgtcaa 508
| |||||||||||| ||| ||||||||||||||||||||||||||||||||||| |||||
Sbjct: 62820480 ttataagcagtgttacaacatggtcccaaatgactgtaagccagacttgaaacatgtcaa 62820421
Query: 509 gaaggtgtacagttgcgaccttacaacactcgtgaaagcgcacatcactaagcggcccat 568
||||||||||||||| ||||||| ||| | | ||||| ||| | |||||| | ||||
Sbjct: 62820420 gaaggtgtacagttgtgaccttatgacatttgcaaaagcctacaccgctaagcaggccat 62820361
Query: 569 ggtggtggacatgtgcatcagggagatcgagtctcgaggtcttaattctgaaggactgta 628
|||||||||||| ||||||| ||| | || ||||||| | ||||||||||||||||| |
Sbjct: 62820360 ggtggtggacatatgcatcaaggaaactgaatctcgagattttaattctgaaggactgca 62820301
Query: 629 ccgagtttcaggatttagtgacctcattgaagatgtcaagatggcttttgacagagatgg 688
| | ||||||||||||||||| ||| ||||||||||||||| ||||||||||||||
Sbjct: 62820300 tggtatatcaggatttagtgacctaattaaagatgtcaagatggtttttgacagagatga 62820241
Query: 689 tgagaaagcagatatttctgtgaacatgtatgaagatatcaacattatcactggtgcgct 748
||||||||||| ||||||||||||| ||| ||||||| |||||||||||||||||| |||
Sbjct: 62820240 tgagaaagcaggtatttctgtgaacgtgtgtgaagat-tcaacattatcactggtgtgct 62820182
Query: 749 gaaactgtacttcagggatttaccaattccactcatcacgtatgacgcctacccgaagt 807
|||||||||||||||||||||||||| |||| ||||| ||||| |||||||| ||||
Sbjct: 62820181 aaaactgtacttcagggatttaccaatcgcacttatcacatatgatgcctaccctaagt 62820123
Score = 143 bits (72), Expect = 2e-31
Identities = 136/156 (87%), Gaps = 1/156 (0%)
Strand = Plus / Minus
Query: 848 agaaaccctccatgaagcactgaaactgctgccgccagctcactgcgaaaccctccggta 907
|||||| || |||||||||||||||| |||| |||||||||||| ||| | || ||||
Sbjct: 62820050 agaaacacttcatgaagcactgaaaccactgca-ccagctcactgcaaaatcttctggta 62819992
Query: 908 cctcatggcgcatctgaagagagtgaccctccacgaaaaggagaacctgatgaatgcgga 967
|||||||| |||||||||||||||||||||||| ||||| ||||| ||||||||||| ||
Sbjct: 62819991 cctcatggtgcatctgaagagagtgaccctccatgaaaaagagaatctgatgaatgcaga 62819932
Query: 968 gaaccttgggattgttttcggcccgaccctcatgag 1003
|| |||||| ||||||||| | || |||||||||||
Sbjct: 62819931 gagccttggaattgttttcagtccaaccctcatgag 62819896
>Sscrofa_Chr01
|| Length = 315321322
Score = 178 bits (90), Expect = 4e-42
Identities = 198/232 (85%), Gaps = 9/232 (3%)
Strand = Plus / Plus
Query: 1 gtgctggctggcagaatgctcatttgttagctgaagagagttcatcgacagacatagatc 60
||||| ||||||||| ||||| ||| ||| || || ||||||||| ||||||||||||||
Sbjct: 41144103 gtgctagctggcaga-tgctcttttattaactaaacagagttcattgacagacatagatc 41144161
Query: 61 aatataggttttctttatttcctgtgaattccaaaatgccatccaaagagtcttggtcgg 120
| |||| ||||||||| | |||| |||||||||||||||||||||||| |||
Sbjct: 41144162 agtataagttttctttgtctcctctgaattccaaaatgccatccaaag-------gtcaa 41144214
Query: 121 gtaggaaaactaatagagctccagtgcacaaatcaaaacaagagggccgtcagcaagatt 180
|||||||||||| ||| || |||| |||||||||||||||||||||||||||||| |||
Sbjct: 41144215 -taggaaaactaacagaactacagtccacaaatcaaaacaagagggccgtcagcaaaatt 41144273
Query: 181 tattgatagcagccttgggaatgaaactgggttctcaaaagtcgtctgtgac 232
||||||||| |||||||| |||||||||||||| | |||||| ||||||||
Sbjct: 41144274 tattgatagatgccttggggatgaaactgggttccccaaagtcatctgtgac 41144325
>Sscrofa_Chr18
|| Length = 61220071
Score = 85.7 bits (43), Expect = 5e-14
Identities = 61/67 (91%)
Strand = Plus / Minus
Query: 346 aggtccatacattcagagggccacactggtgtgaatactgtgccaacttcatgtgggggc 405
||||||| || ||| |||| || ||||||||||||||||||||||||||||||||||| |
Sbjct: 47612879 aggtccacacgttccgaggcccgcactggtgtgaatactgtgccaacttcatgtggggcc 47612820
Query: 406 tcattgc 412
|||||||
Sbjct: 47612819 tcattgc 47612813
>Sscrofa_Chr12
|| Length = 63588571
Score = 61.9 bits (31), Expect = 7e-07
Identities = 64/75 (85%)
Strand = Plus / Minus
Query: 931 tgaccctccacgaaaaggagaacctgatgaatgcggagaaccttgggattgttttcggcc 990
||||||| || ||||||||||| || | | |||| ||||||||||| |||||||| ||||
Sbjct: 32826520 tgacccttcatgaaaaggagaatcttaggtatgcagagaaccttggaattgtttttggcc 32826461
Query: 991 cgaccctcatgaggt 1005
| |||||| ||||||
Sbjct: 32826460 caaccctcctgaggt 32826446
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 32,646,181
Number of extensions: 173
Number of successful extensions: 173
Number of sequences better than 1.0e-05: 6
Number of HSP's gapped: 170
Number of HSP's successfully gapped: 18
Length of query: 1097
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1076
Effective length of database: 2,808,413,156
Effective search space: 3021852555856
Effective search space used: 3021852555856
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)