Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-004114
(1179 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001071313.1| apolipoprotein B mRNA editing enzyme, cataly... 366 e-101
Alignment gi|NP_001033771.1| activation-induced cytidine deaminase [Bos t... 141 1e-33
Alignment gi|NP_001157408.1| probable DNA dC->dU-editing enzyme APOBEC-3A... 139 5e-33
Alignment gi|NP_001029527.1| probable C->U-editing enzyme APOBEC-2 [Bos t... 100 3e-21
Alignment gi|XP_002687863.1| PREDICTED: apolipoprotein B mRNA editing pro... 75 1e-13
Alignment gi|XP_594173.4| PREDICTED: apolipoprotein B mRNA editing protei... 75 1e-13
>ref|NP_001071313.1| apolipoprotein B mRNA editing enzyme, catalytic polypeptide-like 3B
[Bos taurus].
Length = 385
Score = 366 bits (940), Expect = e-101
Identities = 179/310 (57%), Positives = 225/310 (72%), Gaps = 5/310 (1%)
Frame = +2
Query: 263 PASRGGYGQRPRIRNPEEWFHELSPRTFSFHFRNLRFASGRNRSYICCQVEGKN-----C 427
PA RG Y Q P R+ E L P TF F F NL +A+ RN SYIC +VE +
Sbjct: 3 PAYRG-YSQMPWTRDSSEHMARLDPETFYFQFCNLLYANRRNCSYICYKVERRKYHSRAS 61
Query: 428 FFQGIFQNQVPPDPPCHAELCFLSWFQSWGLSPDEHYYVTWFISWSPCCECAAKVAQFLE 607
F G+F NQV CH EL FLSWF + L P+E Y++TWF+SWSPC +CA +VA FL
Sbjct: 62 FDWGVFHNQVYGGTRCHTELRFLSWFHAEKLRPNERYHITWFMSWSPCMKCAKEVADFLG 121
Query: 608 ENRNVSLSLSAARLYYFWKSESREGLRRLSDLGAQVGIMSFQDFQHCWNNFVHNLGMPFQ 787
++NV+LS+ +RLY F + SR+GL RLSD GA V IMS+Q+F++CW FV++ PF+
Sbjct: 122 RHQNVTLSIFTSRLYKFQEEGSRQGLLRLSDQGAHVDIMSYQEFKYCWKKFVYSQRRPFR 181
Query: 788 PWKKLHKNYQRLVTELKQILRNTMNLLKENIFIQQFGNQPRVSAPYYLRKTYLCYQVKGP 967
PWKKL +NYQRLV EL+ IL NTMNLL+E +F QQFGNQPRV APYY RKTYLCYQ+K
Sbjct: 182 PWKKLDRNYQRLVEELEDILGNTMNLLREVLFKQQFGNQPRVPAPYYRRKTYLCYQLKQR 241
Query: 968 DDSILDKGCFQNKKKRHAEIRFIDKINSLNLDQNQCYRIICYVTWSPCHNCAKELGDFIS 1147
+D LD+GCF+NKK+RHAEIRFIDKINSL+L+ +Q Y+IICY+TWSPC NCA EL +FI+
Sbjct: 242 NDLTLDRGCFRNKKQRHAEIRFIDKINSLDLNPSQSYKIICYITWSPCPNCANELVNFIT 301
Query: 1148 NRHPLSLQLF 1177
+ L L++F
Sbjct: 302 RNNHLKLEIF 311
Score = 111 bits (278), Expect = 1e-24
Identities = 53/157 (33%), Positives = 88/157 (56%), Gaps = 2/157 (1%)
Frame = +2
Query: 383 RNRSYICCQVEGKN--CFFQGIFQNQVPPDPPCHAELCFLSWFQSWGLSPDEHYYVTWFI 556
R ++Y+C Q++ +N +G F+N+ HAE+ F+ S L+P + Y + +I
Sbjct: 229 RRKTYLCYQLKQRNDLTLDRGCFRNKKQR----HAEIRFIDKINSLDLNPSQSYKIICYI 284
Query: 557 SWSPCCECAAKVAQFLEENRNVSLSLSAARLYYFWKSESREGLRRLSDLGAQVGIMSFQD 736
+WSPC CA ++ F+ N ++ L + A+RLY+ W + GL+ L + G V +M+ +
Sbjct: 285 TWSPCPNCANELVNFITRNNHLKLEIFASRLYFHWIKSFKMGLQDLQNAGISVAVMTHTE 344
Query: 737 FQHCWNNFVHNLGMPFQPWKKLHKNYQRLVTELKQIL 847
F+ CW FV N PFQPW KL + + L++IL
Sbjct: 345 FEDCWEQFVDNQSRPFQPWDKLEQYSASIRRRLQRIL 381
>ref|NP_001033771.1| activation-induced cytidine deaminase [Bos taurus].
Length = 199
Score = 141 bits (356), Expect = 1e-33
Identities = 74/177 (41%), Positives = 102/177 (57%), Gaps = 7/177 (3%)
Frame = +2
Query: 338 RTFSFHFRNLRFASGRNRSYICCQVEGKNCFFQ-----GIFQNQVPPDPPCHAELCFLSW 502
R F + F+N+R+A GR+ +Y+C V+ ++ G +N+ CH EL FL +
Sbjct: 9 RQFLYQFKNVRWAKGRHETYLCYVVKRRDSPTSFSLDFGHLRNKAG----CHVELLFLRY 64
Query: 503 FQSWGLSPDEHYYVTWFISWSPCCECAAKVAQFLEENRNVSLSLSAARLYYFWKSESR-- 676
W L P Y VTWF SWSPC +CA VA FL N+SL + ARLY+ K
Sbjct: 65 ISDWDLDPGRCYRVTWFTSWSPCYDCARHVADFLRGYPNLSLRIFTARLYFCDKERKAEP 124
Query: 677 EGLRRLSDLGAQVGIMSFQDFQHCWNNFVHNLGMPFQPWKKLHKNYQRLVTELKQIL 847
EGLRRL G Q+ IM+F+D+ +CWN FV N F+ W+ LH+N RL +L++IL
Sbjct: 125 EGLRRLHRAGVQIAIMTFKDYFYCWNTFVENHERTFKAWEGLHENSVRLSRQLRRIL 181
Score = 75.9 bits (185), Expect = 7e-14
Identities = 40/108 (37%), Positives = 60/108 (55%), Gaps = 3/108 (2%)
Frame = +2
Query: 863 LLKENIFIQQFGNQPRVSAPYYLRKTYLCYQVK---GPDDSILDKGCFQNKKKRHAEIRF 1033
L K+ F+ QF N + +TYLCY VK P LD G +NK H E+ F
Sbjct: 5 LKKQRQFLYQFKNVRWAKGRH---ETYLCYVVKRRDSPTSFSLDFGHLRNKAGCHVELLF 61
Query: 1034 IDKINSLNLDQNQCYRIICYVTWSPCHNCAKELGDFISNRHPLSLQLF 1177
+ I+ +LD +CYR+ + +WSPC++CA+ + DF+ LSL++F
Sbjct: 62 LRYISDWDLDPGRCYRVTWFTSWSPCYDCARHVADFLRGYPNLSLRIF 109
>ref|NP_001157408.1| probable DNA dC->dU-editing enzyme APOBEC-3A [Bos taurus].
Length = 185
Score = 139 bits (350), Expect = 5e-33
Identities = 77/187 (41%), Positives = 114/187 (60%), Gaps = 13/187 (6%)
Frame = +2
Query: 341 TFSFHFRNLRFASGR-NRSYICCQVE---GKNCF----FQGIFQNQV--PPDPPCHAELC 490
TF+ +F N GR +++Y+C ++E G ++G +N+ P+ PCHAEL
Sbjct: 5 TFTENFNN----QGRPSKTYLCYEMERLDGNATIPLDEYKGFVRNKGLDQPEKPCHAELY 60
Query: 491 FLSWFQSWGLSPDEHYYVTWFISWSPCCECAAKVAQFLEENRNVSLSLSAARLY---YFW 661
FL +SW L ++HY +T FISWSPC +CA K+ FL+EN ++SL + A+R+Y +F
Sbjct: 61 FLGKIRSWNLDRNQHYRLTCFISWSPCYDCAQKLTTFLKENHHISLHILASRIYTRNHFG 120
Query: 662 KSESREGLRRLSDLGAQVGIMSFQDFQHCWNNFVHNLGMPFQPWKKLHKNYQRLVTELKQ 841
+S GL L GA++ IM+F+DF+HCW FV + G PFQPW+ L+ Q L EL+
Sbjct: 121 CHQS--GLCELQAAGARITIMTFEDFKHCWETFVDHKGKPFQPWEGLNVKSQALCAELQA 178
Query: 842 ILRNTMN 862
IL+ N
Sbjct: 179 ILKTQQN 185
Score = 87.0 bits (214), Expect = 3e-17
Identities = 44/114 (38%), Positives = 67/114 (58%), Gaps = 11/114 (9%)
Frame = +2
Query: 866 LKENIFIQQFGNQPRVSAPYYLRKTYLCYQVKGPDDS-----------ILDKGCFQNKKK 1012
+ E F + F NQ R S KTYLCY+++ D + + +KG Q +K
Sbjct: 1 MDEYTFTENFNNQGRPS------KTYLCYEMERLDGNATIPLDEYKGFVRNKGLDQPEKP 54
Query: 1013 RHAEIRFIDKINSLNLDQNQCYRIICYVTWSPCHNCAKELGDFISNRHPLSLQL 1174
HAE+ F+ KI S NLD+NQ YR+ C+++WSPC++CA++L F+ H +SL +
Sbjct: 55 CHAELYFLGKIRSWNLDRNQHYRLTCFISWSPCYDCAQKLTTFLKENHHISLHI 108
>ref|NP_001029527.1| probable C->U-editing enzyme APOBEC-2 [Bos taurus].
Length = 224
Score = 100 bits (249), Expect = 3e-21
Identities = 55/177 (31%), Positives = 95/177 (53%), Gaps = 8/177 (4%)
Frame = +2
Query: 344 FSFHFRNLRFASGRNRSYICCQVEGKNCFFQ-----GIFQNQVPPDPPCHAELCFLSWFQ 508
F F FRN+ ++SGRN++++C VE ++ Q G +++ + HAE F +
Sbjct: 52 FKFQFRNVEYSSGRNKTFLCYVVEAQSKGGQVQASRGYLEDEHATN---HAEEAFFNSIM 108
Query: 509 SWGLSPDEHYYVTWFISWSPCCECAAKVAQFLEENRNVSLSLSAARLYYFWKSESREGLR 688
P Y VTW++S SPC CA ++ + L + +N+ L + RL+ + + E + LR
Sbjct: 109 PT-FDPALRYMVTWYVSSSPCAACADRIVKTLNKTKNLRLLILVGRLFMWEEPEIQAALR 167
Query: 689 RLSDLGAQVGIMSFQDFQHCWNNFV---HNLGMPFQPWKKLHKNYQRLVTELKQILR 850
+L + G ++ IM QDF++ W NFV F+PW+ + +N+ +L IL+
Sbjct: 168 KLKEAGCRLRIMKPQDFEYIWQNFVEQEEGESKAFEPWEDIQENFLYYEEKLADILK 224
>ref|XP_002687863.1| PREDICTED: apolipoprotein B mRNA editing protein-like [Bos taurus].
Length = 236
Score = 74.7 bits (182), Expect = 1e-13
Identities = 28/81 (34%), Positives = 51/81 (62%)
Frame = +2
Query: 524 PDEHYYVTWFISWSPCCECAAKVAQFLEENRNVSLSLSAARLYYFWKSESREGLRRLSDL 703
P ++ W++SWSPC EC+ + +FL ++ NV+L + ARL+ ++R+GL+ L
Sbjct: 78 PSIRCFIFWYLSWSPCWECSKAIREFLNQHPNVTLVIYIARLFQHMDPQNRQGLKDLVQS 137
Query: 704 GAQVGIMSFQDFQHCWNNFVH 766
G + +M ++++CW NFV+
Sbjct: 138 GVTIQVMRAPEYEYCWRNFVN 158
>ref|XP_594173.4| PREDICTED: apolipoprotein B mRNA editing protein-like [Bos taurus].
Length = 236
Score = 74.7 bits (182), Expect = 1e-13
Identities = 28/81 (34%), Positives = 51/81 (62%)
Frame = +2
Query: 524 PDEHYYVTWFISWSPCCECAAKVAQFLEENRNVSLSLSAARLYYFWKSESREGLRRLSDL 703
P ++ W++SWSPC EC+ + +FL ++ NV+L + ARL+ ++R+GL+ L
Sbjct: 78 PSIRCFIFWYLSWSPCWECSKAIREFLNQHPNVTLVIYIARLFQHMDPQNRQGLKDLVQS 137
Query: 704 GAQVGIMSFQDFQHCWNNFVH 766
G + +M ++++CW NFV+
Sbjct: 138 GVTIQVMRAPEYEYCWRNFVN 158
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 49,251,765
Number of extensions: 1544662
Number of successful extensions: 7009
Number of sequences better than 1.0e-05: 6
Number of HSP's gapped: 6988
Number of HSP's successfully gapped: 9
Length of query: 393
Length of database: 17,681,374
Length adjustment: 104
Effective length of query: 289
Effective length of database: 14,240,222
Effective search space: 4115424158
Effective search space used: 4115424158
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-004114
(1179 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001003380.1| activation-induced cytidine deaminase [Canis... 146 3e-35
Alignment gi|XP_538369.2| PREDICTED: similar to ARP10 protein [Canis fami... 119 7e-27
Alignment gi|XP_852783.1| PREDICTED: similar to Probable DNA dC->dU editi... 118 1e-26
Alignment gi|XP_852569.1| PREDICTED: similar to apolipoprotein B mRNA edi... 105 8e-23
Alignment gi|XP_538909.2| PREDICTED: similar to Probable C->U editing enz... 101 2e-21
Alignment gi|XP_543826.1| PREDICTED: similar to Apolipoprotein B mRNA edi... 80 3e-15
>ref|NP_001003380.1| activation-induced cytidine deaminase [Canis lupus familiaris].
Length = 198
Score = 146 bits (369), Expect = 3e-35
Identities = 75/179 (41%), Positives = 106/179 (59%), Gaps = 6/179 (3%)
Frame = +2
Query: 329 LSPRTFSFHFRNLRFASGRNRSYICCQVEGKNCFFQ-----GIFQNQVPPDPPCHAELCF 493
+ R F +HF+N+R+A GR+ +Y+C V+ ++ G +N+ CH EL F
Sbjct: 6 MKQRKFLYHFKNVRWAKGRHETYLCYVVKRRDSATSFSLDFGHLRNK----SGCHVELLF 61
Query: 494 LSWFQSWGLSPDEHYYVTWFISWSPCCECAAKVAQFLEENRNVSLSLSAARLYYFWKSES 673
L + W L P Y VTWF SWSPC +CA VA FL N+SL + AARLY+ ++
Sbjct: 62 LRYISDWDLDPGRCYRVTWFTSWSPCYDCARHVADFLRGYPNLSLRIFAARLYFCEDRKA 121
Query: 674 R-EGLRRLSDLGAQVGIMSFQDFQHCWNNFVHNLGMPFQPWKKLHKNYQRLVTELKQIL 847
EGLRRL G Q+ IM+F+D+ +CWN FV N F+ W+ LH+N RL +L++IL
Sbjct: 122 EPEGLRRLHRAGVQIAIMTFKDYFYCWNTFVENREKTFKAWEGLHENSVRLSRQLRRIL 180
Score = 75.9 bits (185), Expect = 7e-14
Identities = 39/108 (36%), Positives = 61/108 (56%), Gaps = 3/108 (2%)
Frame = +2
Query: 863 LLKENIFIQQFGNQPRVSAPYYLRKTYLCYQVKGPDDSI---LDKGCFQNKKKRHAEIRF 1033
L+K+ F+ F N + +TYLCY VK D + LD G +NK H E+ F
Sbjct: 5 LMKQRKFLYHFKNVRWAKGRH---ETYLCYVVKRRDSATSFSLDFGHLRNKSGCHVELLF 61
Query: 1034 IDKINSLNLDQNQCYRIICYVTWSPCHNCAKELGDFISNRHPLSLQLF 1177
+ I+ +LD +CYR+ + +WSPC++CA+ + DF+ LSL++F
Sbjct: 62 LRYISDWDLDPGRCYRVTWFTSWSPCYDCARHVADFLRGYPNLSLRIF 109
>ref|XP_538369.2| PREDICTED: similar to ARP10 protein [Canis familiaris].
Length = 185
Score = 119 bits (297), Expect = 7e-27
Identities = 63/187 (33%), Positives = 101/187 (54%), Gaps = 2/187 (1%)
Frame = +2
Query: 329 LSPRTFSFHFRNLRFASG--RNRSYICCQVEGKNCFFQGIFQNQVPPDPPCHAELCFLSW 502
L TF F N R + R+Y+C Q++ + V HAE+CF+
Sbjct: 4 LQEETFYQQFSNQRVPKPTYQRRTYLCYQLKPH--------EGSVIAKEKRHAEICFIDD 55
Query: 503 FQSWGLSPDEHYYVTWFISWSPCCECAAKVAQFLEENRNVSLSLSAARLYYFWKSESREG 682
+S L P + + +T +++WSPC CA K+ F+ ++ ++SL L A+RLY+ W+ + +
Sbjct: 56 IKSRQLDPSQKFEITCYVTWSPCPTCAKKLIAFVNDHPHISLRLFASRLYFHWRQKYKRE 115
Query: 683 LRRLSDLGAQVGIMSFQDFQHCWNNFVHNLGMPFQPWKKLHKNYQRLVTELKQILRNTMN 862
LR L G + +MS+ +F+ CW FV + G PFQPW KL + + + L++IL+ N
Sbjct: 116 LRHLQKSGIPLAVMSYLEFKDCWEKFVDHKGRPFQPWNKLKQYSESIGRRLQRILQPLNN 175
Query: 863 LLKENIF 883
L EN F
Sbjct: 176 L--ENDF 180
Score = 105 bits (263), Expect = 6e-23
Identities = 56/107 (52%), Positives = 71/107 (66%)
Frame = +2
Query: 857 MNLLKENIFIQQFGNQPRVSAPYYLRKTYLCYQVKGPDDSILDKGCFQNKKKRHAEIRFI 1036
MN L+E F QQF NQ RV P Y R+TYLCYQ+K + S++ K +KRHAEI FI
Sbjct: 1 MNPLQEETFYQQFSNQ-RVPKPTYQRRTYLCYQLKPHEGSVIAK------EKRHAEICFI 53
Query: 1037 DKINSLNLDQNQCYRIICYVTWSPCHNCAKELGDFISNRHPLSLQLF 1177
D I S LD +Q + I CYVTWSPC CAK+L F+++ +SL+LF
Sbjct: 54 DDIKSRQLDPSQKFEITCYVTWSPCPTCAKKLIAFVNDHPHISLRLF 100
>ref|XP_852783.1| PREDICTED: similar to Probable DNA dC->dU editing enzyme APOBEC-3A
(Phorbolin 1) [Canis familiaris].
Length = 197
Score = 118 bits (295), Expect = 1e-26
Identities = 73/189 (38%), Positives = 106/189 (56%), Gaps = 8/189 (4%)
Frame = +2
Query: 308 PEEWF-HELSPRTFSFHFRNLRFASGRNRSYICCQVE---GKNCFF----QGIFQNQVPP 463
PE+W H L TF+ +FRN S ++Y+C QVE G + + I QN+
Sbjct: 5 PEDWDRHLLDENTFTQNFRNDHNPS---KTYLCYQVELSDGSSGVLLDQDKDIVQNEGGG 61
Query: 464 DPPCHAELCFLSWFQSWGLSPDEHYYVTWFISWSPCCECAAKVAQFLEENRNVSLSLSAA 643
HAE L +S L Y VT F+SW+PC +CA ++ +FL +NR+VSLS+ A+
Sbjct: 62 GQ--HAEWFLLEHIRSRNLDQKLSYKVTCFLSWTPCEKCAEEIIRFLAKNRHVSLSILAS 119
Query: 644 RLYYFWKSESREGLRRLSDLGAQVGIMSFQDFQHCWNNFVHNLGMPFQPWKKLHKNYQRL 823
R+Y +GLR L D G + IM+F+DF++CW FV + PFQPW L + Q+L
Sbjct: 120 RIYTM--GPYVKGLRELYDAGVHISIMTFRDFEYCWQTFVDHQDSPFQPWADLDRRSQQL 177
Query: 824 VTELKQILR 850
+L+ IL+
Sbjct: 178 SQQLRAILQ 186
Score = 73.9 bits (180), Expect = 3e-13
Identities = 43/112 (38%), Positives = 61/112 (54%), Gaps = 7/112 (6%)
Frame = +2
Query: 860 NLLKENIFIQQFGNQPRVSAPYYLRKTYLCYQVKGPDDSI-----LDKGCFQNKKK--RH 1018
+LL EN F Q F N S KTYLCYQV+ D S DK QN+ +H
Sbjct: 11 HLLDENTFTQNFRNDHNPS------KTYLCYQVELSDGSSGVLLDQDKDIVQNEGGGGQH 64
Query: 1019 AEIRFIDKINSLNLDQNQCYRIICYVTWSPCHNCAKELGDFISNRHPLSLQL 1174
AE ++ I S NLDQ Y++ C+++W+PC CA+E+ F++ +SL +
Sbjct: 65 AEWFLLEHIRSRNLDQKLSYKVTCFLSWTPCEKCAEEIIRFLAKNRHVSLSI 116
>ref|XP_852569.1| PREDICTED: similar to apolipoprotein B mRNA editing enzyme,
catalytic polypeptide-like 3G [Canis familiaris].
Length = 161
Score = 105 bits (262), Expect = 8e-23
Identities = 52/125 (41%), Positives = 76/125 (60%)
Frame = +2
Query: 476 HAELCFLSWFQSWGLSPDEHYYVTWFISWSPCCECAAKVAQFLEENRNVSLSLSAARLYY 655
HAE L +S L Y VT F+SW+PC +CA ++ +FL +NR+VSLS+ A+R+Y
Sbjct: 28 HAEWFLLEHIRSRNLDQKLSYKVTCFLSWTPCEKCAEEIIRFLAKNRHVSLSILASRIYT 87
Query: 656 FWKSESREGLRRLSDLGAQVGIMSFQDFQHCWNNFVHNLGMPFQPWKKLHKNYQRLVTEL 835
+GL L D G + IM+F+DF++CW FV + PFQPW L + Q+L +L
Sbjct: 88 M--GPYVKGLHELYDAGVHISIMTFRDFEYCWQTFVDHQDSPFQPWADLDRRSQQLSQQL 145
Query: 836 KQILR 850
+ IL+
Sbjct: 146 RAILQ 150
Score = 53.9 bits (128), Expect = 3e-07
Identities = 25/70 (35%), Positives = 40/70 (57%)
Frame = +2
Query: 965 PDDSILDKGCFQNKKKRHAEIRFIDKINSLNLDQNQCYRIICYVTWSPCHNCAKELGDFI 1144
PD I KG +HAE ++ I S NLDQ Y++ C+++W+PC CA+E+ F+
Sbjct: 15 PDTGIKPKG----GGGQHAEWFLLEHIRSRNLDQKLSYKVTCFLSWTPCEKCAEEIIRFL 70
Query: 1145 SNRHPLSLQL 1174
+ +SL +
Sbjct: 71 AKNRHVSLSI 80
>ref|XP_538909.2| PREDICTED: similar to Probable C->U editing enzyme APOBEC-2 [Canis
familiaris].
Length = 224
Score = 101 bits (251), Expect = 2e-21
Identities = 57/174 (32%), Positives = 90/174 (51%), Gaps = 5/174 (2%)
Frame = +2
Query: 344 FSFHFRNLRFASGRNRSYICCQVE--GKNCFFQGIFQNQVPPDPPCHAELCFLSWFQSWG 517
F F FRN+ ++SGRN++++C VE GK Q HAE F +
Sbjct: 52 FKFQFRNVEYSSGRNKTFLCYVVEAQGKGGQVQASRGYLEDEHAAAHAEEAFFNTILPT- 110
Query: 518 LSPDEHYYVTWFISWSPCCECAAKVAQFLEENRNVSLSLSAARLYYFWKSESREGLRRLS 697
P Y VTW++S SPC CA ++ + L + +N+ L + RL+ + + E + LR+L
Sbjct: 111 FDPALRYNVTWYVSSSPCAACADRIIRTLGKTKNLRLLILVGRLFMWEEPEVQAALRKLK 170
Query: 698 DLGAQVGIMSFQDFQHCWNNFVH---NLGMPFQPWKKLHKNYQRLVTELKQILR 850
+ G ++ IM QDF++ W NFV FQPW+ + +N+ +L IL+
Sbjct: 171 EAGCRLRIMKPQDFEYVWQNFVEQEKGESKAFQPWEDIQENFLYYEEKLADILK 224
>ref|XP_543826.1| PREDICTED: similar to Apolipoprotein B mRNA editing enzyme
(APOBEC-1) (HEPR) [Canis familiaris].
Length = 251
Score = 80.5 bits (197), Expect = 3e-15
Identities = 39/111 (35%), Positives = 64/111 (57%), Gaps = 1/111 (0%)
Frame = +2
Query: 476 HAELCFLSWFQSWG-LSPDEHYYVTWFISWSPCCECAAKVAQFLEENRNVSLSLSAARLY 652
H E+ F+ F + P +TWF+SWSPC EC+ + FL ++ +V+L + ARL+
Sbjct: 76 HVEINFMEKFAAERQYCPSIRCSITWFLSWSPCWECSNAIRGFLSQHPSVTLVIYVARLF 135
Query: 653 YFWKSESREGLRRLSDLGAQVGIMSFQDFQHCWNNFVHNLGMPFQPWKKLH 805
+ ++R+GLR L + G + IM+ ++ HCW NFV+ + P K+ H
Sbjct: 136 WHTDPQNRQGLRDLINSGVTIQIMTVPEYDHCWRNFVN-----YPPGKEDH 181
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 51,335,331
Number of extensions: 1590847
Number of successful extensions: 7306
Number of sequences better than 1.0e-05: 6
Number of HSP's gapped: 7257
Number of HSP's successfully gapped: 10
Length of query: 393
Length of database: 18,874,504
Length adjustment: 105
Effective length of query: 288
Effective length of database: 15,374,224
Effective search space: 4427776512
Effective search space used: 4427776512
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-004114
(1179 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_004891.3| probable DNA dC->dU-editing enzyme APOBEC-3B [H... 226 4e-59
Alignment gi|NP_660341.2| DNA dC->dU-editing enzyme APOBEC-3F isoform a [... 208 9e-54
Alignment gi|NP_068594.1| DNA dC->dU-editing enzyme APOBEC-3G [Homo sapie... 192 4e-49
Alignment gi|NP_689639.2| probable DNA dC->dU-editing enzyme APOBEC-3D [H... 189 3e-48
Alignment gi|NP_055323.2| probable DNA dC->dU-editing enzyme APOBEC-3C [H... 177 2e-44
Alignment gi|NP_065712.1| activation-induced cytidine deaminase [Homo sap... 144 1e-34
Alignment gi|NP_663745.1| probable DNA dC->dU-editing enzyme APOBEC-3A [H... 129 4e-30
Alignment gi|NP_001180218.1| probable DNA dC->dU-editing enzyme APOBEC-3A... 129 4e-30
Alignment gi|NP_001159476.1| DNA dC->dU-editing enzyme APOBEC-3H isoform ... 112 7e-25
Alignment gi|NP_001159475.1| DNA dC->dU-editing enzyme APOBEC-3H isoform ... 112 7e-25
>ref|NP_004891.3| probable DNA dC->dU-editing enzyme APOBEC-3B [Homo sapiens].
Length = 382
Score = 226 bits (575), Expect = 4e-59
Identities = 127/315 (40%), Positives = 186/315 (59%), Gaps = 20/315 (6%)
Frame = +2
Query: 293 PRIRNPEEWFHELSPRTFSFHFRNLRFASGRNRSYICCQVEGKN-----CFFQGIFQNQV 457
P+IRNP E + TF +F N GR+ +++C +V+ K + G+F+ QV
Sbjct: 3 PQIRNPMERMYR---DTFYDNFENEPILYGRSYTWLCYEVKIKRGRSNLLWDTGVFRGQV 59
Query: 458 PPDPPCHAELCFLSWFQSWGLSPDEHYYVTWFISWSPCCECAAKVAQFLEENRNVSLSLS 637
P HAE+CFLSWF L + + +TWF+SW+PC +C AK+A+FL E+ NV+L++S
Sbjct: 60 YFKPQYHAEMCFLSWFCGNQLPAYKCFQITWFVSWTPCPDCVAKLAEFLSEHPNVTLTIS 119
Query: 638 AARLYYFWKSESREGLRRLSDLGAQVGIMSFQDFQHCWNNFVHNLGMPFQPWKKLHKNYQ 817
AARLYY+W+ + R L RLS GA+V IM +++F +CW NFV+N G F PW K +NY
Sbjct: 120 AARLYYYWERDYRRALCRLSQAGARVTIMDYEEFAYCWENFVYNEGQQFMPWYKFDENYA 179
Query: 818 RLVTELKQILRNTMNLLKENIFIQQFGNQPRVSAPYYLRKTYLCYQVKGPDDS---ILDK 988
L LK+ILR L+ + F F N P V R+TYLCY+V+ D+ ++D+
Sbjct: 180 FLHRTLKEILR---YLMDPDTFTFNFNNDPLV---LRRRQTYLCYEVERLDNGTWVLMDQ 233
Query: 989 --GCFQNKKK--------RHAEIRFIDKINSLNLDQNQCYRIICYVTWSPCHN--CAKEL 1132
G N+ K RHAE+RF+D + SL LD Q YR+ +++WSPC + CA E+
Sbjct: 234 HMGFLCNEAKNLLCGFYGRHAELRFLDLVPSLQLDPAQIYRVTWFISWSPCFSWGCAGEV 293
Query: 1133 GDFISNRHPLSLQLF 1177
F+ + L++F
Sbjct: 294 RAFLQENTHVRLRIF 308
Score = 127 bits (319), Expect = 2e-29
Identities = 75/191 (39%), Positives = 105/191 (54%), Gaps = 13/191 (6%)
Frame = +2
Query: 329 LSPRTFSFHFRNLRFASGRNRSYICCQVEGKNC-----------FFQGIFQNQVPPDPPC 475
+ P TF+F+F N R ++Y+C +VE + F +N +
Sbjct: 193 MDPDTFTFNFNNDPLVLRRRQTYLCYEVERLDNGTWVLMDQHMGFLCNEAKNLLCGFYGR 252
Query: 476 HAELCFLSWFQSWGLSPDEHYYVTWFISWSPCCE--CAAKVAQFLEENRNVSLSLSAARL 649
HAEL FL S L P + Y VTWFISWSPC CA +V FL+EN +V L + AAR+
Sbjct: 253 HAELRFLDLVPSLQLDPAQIYRVTWFISWSPCFSWGCAGEVRAFLQENTHVRLRIFAARI 312
Query: 650 YYFWKSESREGLRRLSDLGAQVGIMSFQDFQHCWNNFVHNLGMPFQPWKKLHKNYQRLVT 829
Y + +E L+ L D GAQV IM++ +F++CW+ FV+ G PFQPW L ++ Q L
Sbjct: 313 YDY-DPLYKEALQMLRDAGAQVSIMTYDEFEYCWDTFVYRQGCPFQPWDGLEEHSQALSG 371
Query: 830 ELKQILRNTMN 862
L+ IL+N N
Sbjct: 372 RLRAILQNQGN 382
>ref|NP_660341.2| DNA dC->dU-editing enzyme APOBEC-3F isoform a [Homo sapiens].
Length = 373
Score = 208 bits (529), Expect = 9e-54
Identities = 117/307 (38%), Positives = 169/307 (55%), Gaps = 11/307 (3%)
Frame = +2
Query: 290 RPRIRNPEEWFHELSPRTFSFHFRNLRFASGRNRSYICCQVEGKNC----FFQGIFQNQV 457
+P RN E + TFS++F N S RN ++C +V+ K IF+ QV
Sbjct: 2 KPHFRNTVERMYR---DTFSYNFYNRPILSRRNTVWLCYEVKTKGPSRPRLDAKIFRGQV 58
Query: 458 PPDPPCHAELCFLSWFQSWGLSPDEHYYVTWFISWSPCCECAAKVAQFLEENRNVSLSLS 637
P HAE+CFLSWF L + + +TWF+SW+PC +C AK+A+FL E+ NV+L++S
Sbjct: 59 YSQPEHHAEMCFLSWFCGNQLPAYKCFQITWFVSWTPCPDCVAKLAEFLAEHPNVTLTIS 118
Query: 638 AARLYYFWKSESREGLRRLSDLGAQVGIMSFQDFQHCWNNFVHNLGMPFQPWKKLHKNYQ 817
AARLYY+W+ + R L RLS GA+V IM ++F +CW NFV++ G PF PW K NY
Sbjct: 119 AARLYYYWERDYRRALCRLSQAGARVKIMDDEEFAYCWENFVYSEGQPFMPWYKFDDNYA 178
Query: 818 RLVTELKQILRNTMNLLKENIFIQQFGNQPRVSAPYYLRKTYLCYQ---VKGPDDSILDK 988
L LK+ILRN M + +IF F N + Y +++LC+ VK +
Sbjct: 179 FLHRTLKEILRNPMEAMYPHIFYFHFKN---LRKAYGRNESWLCFTMEVVKHHSPVSWKR 235
Query: 989 GCFQN----KKKRHAEIRFIDKINSLNLDQNQCYRIICYVTWSPCHNCAKELGDFISNRH 1156
G F+N + HAE F+ L N Y + Y +WSPC CA E+ +F++
Sbjct: 236 GVFRNQVDPETHCHAERCFLSWFCDDILSPNTNYEVTWYTSWSPCPECAGEVAEFLARHS 295
Query: 1157 PLSLQLF 1177
++L +F
Sbjct: 296 NVNLTIF 302
Score = 193 bits (491), Expect = 2e-49
Identities = 94/188 (50%), Positives = 128/188 (68%), Gaps = 5/188 (2%)
Frame = +2
Query: 299 IRNPEEWFHELSPRTFSFHFRNLRFASGRNRSYICCQVE-----GKNCFFQGIFQNQVPP 463
+RNP E + P F FHF+NLR A GRN S++C +E + +G+F+NQV P
Sbjct: 188 LRNPMEAMY---PHIFYFHFKNLRKAYGRNESWLCFTMEVVKHHSPVSWKRGVFRNQVDP 244
Query: 464 DPPCHAELCFLSWFQSWGLSPDEHYYVTWFISWSPCCECAAKVAQFLEENRNVSLSLSAA 643
+ CHAE CFLSWF LSP+ +Y VTW+ SWSPC ECA +VA+FL + NV+L++ A
Sbjct: 245 ETHCHAERCFLSWFCDDILSPNTNYEVTWYTSWSPCPECAGEVAEFLARHSNVNLTIFTA 304
Query: 644 RLYYFWKSESREGLRRLSDLGAQVGIMSFQDFQHCWNNFVHNLGMPFQPWKKLHKNYQRL 823
RLYYFW ++ +EGLR LS GA V IM ++DF++CW NFV+N PF+PWK L N+ L
Sbjct: 305 RLYYFWDTDYQEGLRSLSQEGASVEIMGYKDFKYCWENFVYNDDEPFKPWKGLKYNFLFL 364
Query: 824 VTELKQIL 847
++L++IL
Sbjct: 365 DSKLQEIL 372
>ref|NP_068594.1| DNA dC->dU-editing enzyme APOBEC-3G [Homo sapiens].
Length = 384
Score = 192 bits (489), Expect = 4e-49
Identities = 118/318 (37%), Positives = 171/318 (53%), Gaps = 22/318 (6%)
Frame = +2
Query: 290 RPRIRNPEEWFHELSPRTFSFHFRNLRFASGRNRSYICCQVEGKNC----FFQGIFQNQV 457
+P RN E + TFS++F N S RN ++C +V+ K IF+ QV
Sbjct: 2 KPHFRNTVERMYR---DTFSYNFYNRPILSRRNTVWLCYEVKTKGPSRPPLDAKIFRGQV 58
Query: 458 PPDPPCHAELCFLSWFQSWG-LSPDEHYYVTWFISWSPCCECAAKVAQFLEENRNVSLSL 634
+ H E+ F WF W L D+ Y VTW+ISWSPC +C +A FL E+ V+L++
Sbjct: 59 YSELKYHPEMRFFHWFSKWRKLHRDQEYEVTWYISWSPCTKCTRDMATFLAEDPKVTLTI 118
Query: 635 SAARLYYFWKSESREGLRRLSDL----GAQVGIMSFQDFQHCWNNFVHNLGMPFQPWKKL 802
ARLYYFW + +E LR L A + IM++ +FQHCW+ FV++ F+PW L
Sbjct: 119 FVARLYYFWDPDYQEALRSLCQKRDGPRATMKIMNYDEFQHCWSKFVYSQRELFEPWNNL 178
Query: 803 HKNYQRLVTELKQILRNTMNLLKENIFIQQFGNQPRVSAPYYLRKTYLCYQVKGPDDS-- 976
K Y L L +ILR++M+ F F N+P V + +TYLCY+V+ +
Sbjct: 179 PKYYILLHIMLGEILRHSMD---PPTFTFNFNNEPWVRGRH---ETYLCYEVERMHNDTW 232
Query: 977 -ILDKG----CFQNKKK------RHAEIRFIDKINSLNLDQNQCYRIICYVTWSPCHNCA 1123
+L++ C Q K RHAE+ F+D I LD +Q YR+ C+ +WSPC +CA
Sbjct: 233 VLLNQRRGFLCNQAPHKHGFLEGRHAELCFLDVIPFWKLDLDQDYRVTCFTSWSPCFSCA 292
Query: 1124 KELGDFISNRHPLSLQLF 1177
+E+ FIS +SL +F
Sbjct: 293 QEMAKFISKNKHVSLCIF 310
Score = 145 bits (366), Expect = 7e-35
Identities = 76/191 (39%), Positives = 112/191 (58%), Gaps = 11/191 (5%)
Frame = +2
Query: 323 HELSPRTFSFHFRNLRFASGRNRSYICCQVEGKNCFF-------QGIFQNQVPPDPPC-- 475
H + P TF+F+F N + GR+ +Y+C +VE + +G NQ P
Sbjct: 195 HSMDPPTFTFNFNNEPWVRGRHETYLCYEVERMHNDTWVLLNQRRGFLCNQAPHKHGFLE 254
Query: 476 --HAELCFLSWFQSWGLSPDEHYYVTWFISWSPCCECAAKVAQFLEENRNVSLSLSAARL 649
HAELCFL W L D+ Y VT F SWSPC CA ++A+F+ +N++VSL + AR+
Sbjct: 255 GRHAELCFLDVIPFWKLDLDQDYRVTCFTSWSPCFSCAQEMAKFISKNKHVSLCIFTARI 314
Query: 650 YYFWKSESREGLRRLSDLGAQVGIMSFQDFQHCWNNFVHNLGMPFQPWKKLHKNYQRLVT 829
Y + +EGLR L++ GA++ IM++ +F+HCW+ FV + G PFQPW L ++ Q L
Sbjct: 315 YDD-QGRCQEGLRTLAEAGAKISIMTYSEFKHCWDTFVDHQGCPFQPWDGLDEHSQDLSG 373
Query: 830 ELKQILRNTMN 862
L+ IL+N N
Sbjct: 374 RLRAILQNQEN 384
>ref|NP_689639.2| probable DNA dC->dU-editing enzyme APOBEC-3D [Homo sapiens].
Length = 386
Score = 189 bits (481), Expect = 3e-48
Identities = 113/319 (35%), Positives = 164/319 (51%), Gaps = 24/319 (7%)
Frame = +2
Query: 293 PRIRNPEEWFHELSPRTFSFHFRNLRFASGRNRSYICCQVEGKN-----CFFQGIFQNQV 457
P+IRNP E + TF +F N GR+ +++C +V+ K + G+F+ V
Sbjct: 3 PQIRNPMERMYR---DTFYDNFENEPILYGRSYTWLCYEVKIKRGRSNLLWDTGVFRGPV 59
Query: 458 PPDPPC------------HAELCFLSWFQSWGLSPDEHYYVTWFISWSPCCECAAKVAQF 601
P HAE+CFLSWF L + + +TWF+SW+PC C KV +F
Sbjct: 60 LPKRQSNHRQEVYFRFENHAEMCFLSWFCGNRLPANRRFQITWFVSWNPCLPCVVKVTKF 119
Query: 602 LEENRNVSLSLSAARLYYFWKSESREGLRRLSDLGAQVGIMSFQDFQHCWNNFVHNLGMP 781
L E+ NV+L++SAARLYY+ + R L RL GA+V IM ++DF +CW NFV N G P
Sbjct: 120 LAEHPNVTLTISAARLYYYRDRDWRWVLLRLHKAGARVKIMDYEDFAYCWENFVCNEGQP 179
Query: 782 FQPWKKLHKNYQRLVTELKQILRNTMNLLKENIFIQQFGNQPRVSAPYYLRKTYLCYQV- 958
F PW K NY L LK+ILRN M + +IF F N + +++LC+ +
Sbjct: 180 FMPWYKFDDNYASLHRTLKEILRNPMEAMYPHIFYFHFKNLLKACG---RNESWLCFTME 236
Query: 959 --KGPDDSILDKGCFQN----KKKRHAEIRFIDKINSLNLDQNQCYRIICYVTWSPCHNC 1120
K +G F+N + HAE F+ L N Y + Y +WSPC C
Sbjct: 237 VTKHHSAVFRKRGVFRNQVDPETHCHAERCFLSWFCDDILSPNTNYEVTWYTSWSPCPEC 296
Query: 1121 AKELGDFISNRHPLSLQLF 1177
A E+ +F++ ++L +F
Sbjct: 297 AGEVAEFLARHSNVNLTIF 315
Score = 182 bits (462), Expect = 5e-46
Identities = 91/189 (48%), Positives = 124/189 (65%), Gaps = 5/189 (2%)
Frame = +2
Query: 299 IRNPEEWFHELSPRTFSFHFRNLRFASGRNRSYICCQVE---GKNCFFQ--GIFQNQVPP 463
+RNP E + P F FHF+NL A GRN S++C +E + F+ G+F+NQV P
Sbjct: 201 LRNPMEAMY---PHIFYFHFKNLLKACGRNESWLCFTMEVTKHHSAVFRKRGVFRNQVDP 257
Query: 464 DPPCHAELCFLSWFQSWGLSPDEHYYVTWFISWSPCCECAAKVAQFLEENRNVSLSLSAA 643
+ CHAE CFLSWF LSP+ +Y VTW+ SWSPC ECA +VA+FL + NV+L++ A
Sbjct: 258 ETHCHAERCFLSWFCDDILSPNTNYEVTWYTSWSPCPECAGEVAEFLARHSNVNLTIFTA 317
Query: 644 RLYYFWKSESREGLRRLSDLGAQVGIMSFQDFQHCWNNFVHNLGMPFQPWKKLHKNYQRL 823
RL YFW ++ +EGL LS GA V IM ++DF CW NFV++ PF+PWK L N++ L
Sbjct: 318 RLCYFWDTDYQEGLCSLSQEGASVKIMGYKDFVSCWKNFVYSDDEPFKPWKGLQTNFRLL 377
Query: 824 VTELKQILR 850
L++IL+
Sbjct: 378 KRRLREILQ 386
>ref|NP_055323.2| probable DNA dC->dU-editing enzyme APOBEC-3C [Homo sapiens].
Length = 190
Score = 177 bits (448), Expect = 2e-44
Identities = 89/191 (46%), Positives = 122/191 (63%), Gaps = 5/191 (2%)
Frame = +2
Query: 293 PRIRNPEEWFHELSPRTFSFHFRNLRFASGRNRSYICCQVEGKN-----CFFQGIFQNQV 457
P+IRNP + + P TF F F+NL A+ RN +++C VEG + G+F+NQV
Sbjct: 3 PQIRNPMKAMY---PGTFYFQFKNLWEANDRNETWLCFTVEGIKRRSVVSWKTGVFRNQV 59
Query: 458 PPDPPCHAELCFLSWFQSWGLSPDEHYYVTWFISWSPCCECAAKVAQFLEENRNVSLSLS 637
+ CHAE CFLSWF LSP+ Y VTW+ SWSPC +CA +VA+FL + NV+L++
Sbjct: 60 DSETHCHAERCFLSWFCDDILSPNTKYQVTWYTSWSPCPDCAGEVAEFLARHSNVNLTIF 119
Query: 638 AARLYYFWKSESREGLRRLSDLGAQVGIMSFQDFQHCWNNFVHNLGMPFQPWKKLHKNYQ 817
ARLYYF +EGLR LS G V IM ++DF++CW NFV+N PF+PWK L N++
Sbjct: 120 TARLYYFQYPCYQEGLRSLSQEGVAVEIMDYEDFKYCWENFVYNDNEPFKPWKGLKTNFR 179
Query: 818 RLVTELKQILR 850
L L++ L+
Sbjct: 180 LLKRRLRESLQ 190
>ref|NP_065712.1| activation-induced cytidine deaminase [Homo sapiens].
Length = 198
Score = 144 bits (364), Expect = 1e-34
Identities = 74/179 (41%), Positives = 105/179 (58%), Gaps = 6/179 (3%)
Frame = +2
Query: 329 LSPRTFSFHFRNLRFASGRNRSYICCQVEGKNCFFQ-----GIFQNQVPPDPPCHAELCF 493
++ R F + F+N+R+A GR +Y+C V+ ++ G +N+ CH EL F
Sbjct: 6 MNRRKFLYQFKNVRWAKGRRETYLCYVVKRRDSATSFSLDFGYLRNK----NGCHVELLF 61
Query: 494 LSWFQSWGLSPDEHYYVTWFISWSPCCECAAKVAQFLEENRNVSLSLSAARLYYFWKSES 673
L + W L P Y VTWF SWSPC +CA VA FL N N+SL + ARLY+ ++
Sbjct: 62 LRYISDWDLDPGRCYRVTWFTSWSPCYDCARHVADFLRGNPNLSLRIFTARLYFCEDRKA 121
Query: 674 R-EGLRRLSDLGAQVGIMSFQDFQHCWNNFVHNLGMPFQPWKKLHKNYQRLVTELKQIL 847
EGLRRL G Q+ IM+F+D+ +CWN FV N F+ W+ LH+N RL +L++IL
Sbjct: 122 EPEGLRRLHRAGVQIAIMTFKDYFYCWNTFVENHERTFKAWEGLHENSVRLSRQLRRIL 180
Score = 77.8 bits (190), Expect = 2e-14
Identities = 41/108 (37%), Positives = 61/108 (56%), Gaps = 3/108 (2%)
Frame = +2
Query: 863 LLKENIFIQQFGNQPRVSAPYYLRKTYLCYQVKGPDDSI---LDKGCFQNKKKRHAEIRF 1033
L+ F+ QF N V R+TYLCY VK D + LD G +NK H E+ F
Sbjct: 5 LMNRRKFLYQFKN---VRWAKGRRETYLCYVVKRRDSATSFSLDFGYLRNKNGCHVELLF 61
Query: 1034 IDKINSLNLDQNQCYRIICYVTWSPCHNCAKELGDFISNRHPLSLQLF 1177
+ I+ +LD +CYR+ + +WSPC++CA+ + DF+ LSL++F
Sbjct: 62 LRYISDWDLDPGRCYRVTWFTSWSPCYDCARHVADFLRGNPNLSLRIF 109
>ref|NP_663745.1| probable DNA dC->dU-editing enzyme APOBEC-3A [Homo sapiens].
Length = 199
Score = 129 bits (325), Expect = 4e-30
Identities = 79/194 (40%), Positives = 108/194 (55%), Gaps = 14/194 (7%)
Frame = +2
Query: 323 HELSPRTFSFHFRNLRFASGRNRSYICCQVEG-------KNCFFQGIFQNQVPPDPPC-- 475
H + P F+ +F N GR+++Y+C +VE K +G NQ + C
Sbjct: 11 HLMDPHIFTSNFNN---GIGRHKTYLCYEVERLDNGTSVKMDQHRGFLHNQAK-NLLCGF 66
Query: 476 ---HAELCFLSWFQSWGLSPDEHYYVTWFISWSPCCE--CAAKVAQFLEENRNVSLSLSA 640
HAEL FL S L P + Y VTWFISWSPC CA +V FL+EN +V L + A
Sbjct: 67 YGRHAELRFLDLVPSLQLDPAQIYRVTWFISWSPCFSWGCAGEVRAFLQENTHVRLRIFA 126
Query: 641 ARLYYFWKSESREGLRRLSDLGAQVGIMSFQDFQHCWNNFVHNLGMPFQPWKKLHKNYQR 820
AR+Y + +E L+ L D GAQV IM++ +F+HCW+ FV + G PFQPW L ++ Q
Sbjct: 127 ARIYDY-DPLYKEALQMLRDAGAQVSIMTYDEFKHCWDTFVDHQGCPFQPWDGLDEHSQA 185
Query: 821 LVTELKQILRNTMN 862
L L+ IL+N N
Sbjct: 186 LSGRLRAILQNQGN 199
Score = 64.3 bits (155), Expect = 2e-10
Identities = 41/121 (33%), Positives = 61/121 (50%), Gaps = 15/121 (12%)
Frame = +2
Query: 860 NLLKENIFIQQFGNQPRVSAPYYLRKTYLCYQVKGPDDSILDK-----GCFQNKKK---- 1012
+L+ +IF F N KTYLCY+V+ D+ K G N+ K
Sbjct: 11 HLMDPHIFTSNFNNG------IGRHKTYLCYEVERLDNGTSVKMDQHRGFLHNQAKNLLC 64
Query: 1013 ----RHAEIRFIDKINSLNLDQNQCYRIICYVTWSPCHN--CAKELGDFISNRHPLSLQL 1174
RHAE+RF+D + SL LD Q YR+ +++WSPC + CA E+ F+ + L++
Sbjct: 65 GFYGRHAELRFLDLVPSLQLDPAQIYRVTWFISWSPCFSWGCAGEVRAFLQENTHVRLRI 124
Query: 1175 F 1177
F
Sbjct: 125 F 125
>ref|NP_001180218.1| probable DNA dC->dU-editing enzyme APOBEC-3A [Homo sapiens].
Length = 199
Score = 129 bits (325), Expect = 4e-30
Identities = 79/194 (40%), Positives = 108/194 (55%), Gaps = 14/194 (7%)
Frame = +2
Query: 323 HELSPRTFSFHFRNLRFASGRNRSYICCQVEG-------KNCFFQGIFQNQVPPDPPC-- 475
H + P F+ +F N GR+++Y+C +VE K +G NQ + C
Sbjct: 11 HLMDPHIFTSNFNN---GIGRHKTYLCYEVERLDNGTSVKMDQHRGFLHNQAK-NLLCGF 66
Query: 476 ---HAELCFLSWFQSWGLSPDEHYYVTWFISWSPCCE--CAAKVAQFLEENRNVSLSLSA 640
HAEL FL S L P + Y VTWFISWSPC CA +V FL+EN +V L + A
Sbjct: 67 YGRHAELRFLDLVPSLQLDPAQIYRVTWFISWSPCFSWGCAGEVRAFLQENTHVRLRIFA 126
Query: 641 ARLYYFWKSESREGLRRLSDLGAQVGIMSFQDFQHCWNNFVHNLGMPFQPWKKLHKNYQR 820
AR+Y + +E L+ L D GAQV IM++ +F+HCW+ FV + G PFQPW L ++ Q
Sbjct: 127 ARIYDY-DPLYKEALQMLRDAGAQVSIMTYDEFKHCWDTFVDHQGCPFQPWDGLDEHSQA 185
Query: 821 LVTELKQILRNTMN 862
L L+ IL+N N
Sbjct: 186 LSGRLRAILQNQGN 199
Score = 64.3 bits (155), Expect = 2e-10
Identities = 41/121 (33%), Positives = 61/121 (50%), Gaps = 15/121 (12%)
Frame = +2
Query: 860 NLLKENIFIQQFGNQPRVSAPYYLRKTYLCYQVKGPDDSILDK-----GCFQNKKK---- 1012
+L+ +IF F N KTYLCY+V+ D+ K G N+ K
Sbjct: 11 HLMDPHIFTSNFNNG------IGRHKTYLCYEVERLDNGTSVKMDQHRGFLHNQAKNLLC 64
Query: 1013 ----RHAEIRFIDKINSLNLDQNQCYRIICYVTWSPCHN--CAKELGDFISNRHPLSLQL 1174
RHAE+RF+D + SL LD Q YR+ +++WSPC + CA E+ F+ + L++
Sbjct: 65 GFYGRHAELRFLDLVPSLQLDPAQIYRVTWFISWSPCFSWGCAGEVRAFLQENTHVRLRI 124
Query: 1175 F 1177
F
Sbjct: 125 F 125
>ref|NP_001159476.1| DNA dC->dU-editing enzyme APOBEC-3H isoform 4 [Homo sapiens].
Length = 154
Score = 112 bits (280), Expect = 7e-25
Identities = 54/107 (50%), Positives = 70/107 (65%)
Frame = +2
Query: 857 MNLLKENIFIQQFGNQPRVSAPYYLRKTYLCYQVKGPDDSILDKGCFQNKKKRHAEIRFI 1036
M LL F QF N+ R+ PYY RK LCYQ+ + S +G F+NKKK HAEI FI
Sbjct: 1 MALLTAETFRLQFNNKRRLRRPYYPRKALLCYQLTPQNGSTPTRGYFENKKKCHAEICFI 60
Query: 1037 DKINSLNLDQNQCYRIICYVTWSPCHNCAKELGDFISNRHPLSLQLF 1177
++I S+ LD+ QCY++ CY+TWSPC +CA EL DFI L+L +F
Sbjct: 61 NEIKSMGLDETQCYQVTCYLTWSPCSSCAWELVDFIKAHDHLNLGIF 107
Score = 84.0 bits (206), Expect = 3e-16
Identities = 46/139 (33%), Positives = 76/139 (54%), Gaps = 5/139 (3%)
Frame = +2
Query: 329 LSPRTFSFHFRN---LRFASGRNRSYICCQVEGKNCFF--QGIFQNQVPPDPPCHAELCF 493
L+ TF F N LR ++ +C Q+ +N +G F+N+ CHAE+CF
Sbjct: 4 LTAETFRLQFNNKRRLRRPYYPRKALLCYQLTPQNGSTPTRGYFENK----KKCHAEICF 59
Query: 494 LSWFQSWGLSPDEHYYVTWFISWSPCCECAAKVAQFLEENRNVSLSLSAARLYYFWKSES 673
++ +S GL + Y VT +++WSPC CA ++ F++ + +++L + A+RLYY W
Sbjct: 60 INEIKSMGLDETQCYQVTCYLTWSPCSSCAWELVDFIKAHDHLNLGIFASRLYYHWCKPQ 119
Query: 674 REGLRRLSDLGAQVGIMSF 730
++GLR L V +M F
Sbjct: 120 QKGLRLLCGSQVPVEVMGF 138
>ref|NP_001159475.1| DNA dC->dU-editing enzyme APOBEC-3H isoform 1 [Homo sapiens].
Length = 200
Score = 112 bits (280), Expect = 7e-25
Identities = 54/107 (50%), Positives = 70/107 (65%)
Frame = +2
Query: 857 MNLLKENIFIQQFGNQPRVSAPYYLRKTYLCYQVKGPDDSILDKGCFQNKKKRHAEIRFI 1036
M LL F QF N+ R+ PYY RK LCYQ+ + S +G F+NKKK HAEI FI
Sbjct: 1 MALLTAETFRLQFNNKRRLRRPYYPRKALLCYQLTPQNGSTPTRGYFENKKKCHAEICFI 60
Query: 1037 DKINSLNLDQNQCYRIICYVTWSPCHNCAKELGDFISNRHPLSLQLF 1177
++I S+ LD+ QCY++ CY+TWSPC +CA EL DFI L+L +F
Sbjct: 61 NEIKSMGLDETQCYQVTCYLTWSPCSSCAWELVDFIKAHDHLNLGIF 107
Score = 106 bits (265), Expect = 4e-23
Identities = 61/181 (33%), Positives = 98/181 (54%), Gaps = 9/181 (4%)
Frame = +2
Query: 329 LSPRTFSFHFRN---LRFASGRNRSYICCQVEGKNCFF--QGIFQNQVPPDPPCHAELCF 493
L+ TF F N LR ++ +C Q+ +N +G F+N+ CHAE+CF
Sbjct: 4 LTAETFRLQFNNKRRLRRPYYPRKALLCYQLTPQNGSTPTRGYFENK----KKCHAEICF 59
Query: 494 LSWFQSWGLSPDEHYYVTWFISWSPCCECAAKVAQFLEENRNVSLSLSAARLYYFWKSES 673
++ +S GL + Y VT +++WSPC CA ++ F++ + +++L + A+RLYY W
Sbjct: 60 INEIKSMGLDETQCYQVTCYLTWSPCSSCAWELVDFIKAHDHLNLGIFASRLYYHWCKPQ 119
Query: 674 REGLRRLSDLGAQVGIMSFQDFQHCWNNFV-HNLGMPFQPWK---KLHKNYQRLVTELKQ 841
++GLR L V +M F F CW NFV H + F P+K +L KN + + L++
Sbjct: 120 QKGLRLLCGSQVPVEVMGFPKFADCWENFVDHEKPLSFNPYKMLEELDKNSRAIKRRLER 179
Query: 842 I 844
I
Sbjct: 180 I 180
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 50,139,027
Number of extensions: 1544756
Number of successful extensions: 6902
Number of sequences better than 1.0e-05: 14
Number of HSP's gapped: 6822
Number of HSP's successfully gapped: 25
Length of query: 393
Length of database: 18,297,164
Length adjustment: 105
Effective length of query: 288
Effective length of database: 14,835,944
Effective search space: 4272751872
Effective search space used: 4272751872
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-004114
(1179 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_084531.2| DNA dC->dU-editing enzyme APOBEC-3 isoform 2 [M... 223 3e-58
Alignment gi|NP_001153887.1| DNA dC->dU-editing enzyme APOBEC-3 isoform 1... 210 2e-54
Alignment gi|NP_033775.1| activation-induced cytidine deaminase [Mus musc... 150 1e-36
Alignment gi|NP_033824.1| probable C->U-editing enzyme APOBEC-2 [Mus musc... 100 2e-21
Alignment gi|NP_112436.1| C->U-editing enzyme APOBEC-1 isoform 1 [Mus mus... 80 2e-15
Alignment gi|NP_001127863.1| C->U-editing enzyme APOBEC-1 isoform 2 [Mus ... 80 2e-15
>ref|NP_084531.2| DNA dC->dU-editing enzyme APOBEC-3 isoform 2 [Mus musculus].
Length = 396
Score = 223 bits (567), Expect = 3e-58
Identities = 123/293 (41%), Positives = 174/293 (59%), Gaps = 10/293 (3%)
Frame = +2
Query: 329 LSPRTFSFHFRNLRFASGRNRSYICCQVEGKNC-----FFQGIFQNQVPPDPPCHAELCF 493
+S TF FHF+NL +A GR +++C +V K+C G+F+N+ HAE+CF
Sbjct: 21 ISQETFKFHFKNLGYAKGRKDTFLCYEVTRKDCDSPVSLHHGVFKNK----DNIHAEICF 76
Query: 494 LSWFQSWGL---SPDEHYYVTWFISWSPCCECAAKVAQFLEENRNVSLSLSAARLYYFWK 664
L WF L SP E + +TW++SWSPC ECA ++ +FL + N+SL + ++RLY
Sbjct: 77 LYWFHDKVLKVLSPREEFKITWYMSWSPCFECAEQIVRFLATHHNLSLDIFSSRLYNVQD 136
Query: 665 SESREGLRRLSDLGAQVGIMSFQDFQHCWNNFVHNLGMPFQPWKKLHKNYQRLVTELKQI 844
E+++ L RL GAQV M +F+ CW FV N G F+PWK+L N++ ++L++I
Sbjct: 137 PETQQNLCRLVQEGAQVAAMDLYEFKKCWKKFVDNGGRRFRPWKRLLTNFRYQDSKLQEI 196
Query: 845 LRNTMNLLKENIFIQQFGNQPRVSAPYYLR-KTYLCYQVKGPDDSILDKGCFQNKK-KRH 1018
LR M+ L E F QF NQ YY R K YLCYQ++ + KGC ++K K+H
Sbjct: 197 LRR-MDPLSEEEFYSQFYNQRVKHLCYYHRMKPYLCYQLEQFNGQAPLKGCLLSEKGKQH 255
Query: 1019 AEIRFIDKINSLNLDQNQCYRIICYVTWSPCHNCAKELGDFISNRHPLSLQLF 1177
AEI F+DKI S+ L Q I CY+TWSPC NCA +L F +R L L ++
Sbjct: 256 AEILFLDKIRSMELSQ---VTITCYLTWSPCPNCAWQLAAFKRDRPDLILHIY 305
Score = 83.2 bits (204), Expect = 4e-16
Identities = 58/178 (32%), Positives = 84/178 (47%), Gaps = 6/178 (3%)
Frame = +2
Query: 329 LSPRTFSFHFRNLRFAS----GRNRSYICCQVEGKN--CFFQGIFQNQVPPDPPCHAELC 490
LS F F N R R + Y+C Q+E N +G ++ HAE+
Sbjct: 203 LSEEEFYSQFYNQRVKHLCYYHRMKPYLCYQLEQFNGQAPLKGCLLSEKGKQ---HAEIL 259
Query: 491 FLSWFQSWGLSPDEHYYVTWFISWSPCCECAAKVAQFLEENRNVSLSLSAARLYYFWKSE 670
FL +S LS +T +++WSPC CA ++A F + ++ L + +RLY+ WK
Sbjct: 260 FLDKIRSMELS---QVTITCYLTWSPCPNCAWQLAAFKRDRPDLILHIYTSRLYFHWKRP 316
Query: 671 SREGLRRLSDLGAQVGIMSFQDFQHCWNNFVHNLGMPFQPWKKLHKNYQRLVTELKQI 844
++GL L G V +M F CW NFV N PF PWK L +R L++I
Sbjct: 317 FQKGLCSLWQSGILVDVMDLPQFTDCWTNFV-NPKRPFWPWKGLEIISRRTQRRLRRI 373
>ref|NP_001153887.1| DNA dC->dU-editing enzyme APOBEC-3 isoform 1 [Mus musculus].
Length = 429
Score = 210 bits (535), Expect = 2e-54
Identities = 123/325 (37%), Positives = 174/325 (53%), Gaps = 42/325 (12%)
Frame = +2
Query: 329 LSPRTFSFHFRNLRFASGRNRSYICCQVEGKNC-----FFQGIFQNQVPPDPPCHAELCF 493
+S TF FHF+NL +A GR +++C +V K+C G+F+N+ HAE+CF
Sbjct: 21 ISQETFKFHFKNLGYAKGRKDTFLCYEVTRKDCDSPVSLHHGVFKNK----DNIHAEICF 76
Query: 494 LSWFQSWGL---SPDEHYYVTWFISWSPCCECAAKVAQFLEENRNVSLSLSAARLYYFWK 664
L WF L SP E + +TW++SWSPC ECA ++ +FL + N+SL + ++RLY
Sbjct: 77 LYWFHDKVLKVLSPREEFKITWYMSWSPCFECAEQIVRFLATHHNLSLDIFSSRLYNVQD 136
Query: 665 SESREGLRRLSDLGAQVGIMSFQDFQHCWNNFVHNLGMPFQPWKKLHKNYQRLVTELKQI 844
E+++ L RL GAQV M +F+ CW FV N G F+PWK+L N++ ++L++I
Sbjct: 137 PETQQNLCRLVQEGAQVAAMDLYEFKKCWKKFVDNGGRRFRPWKRLLTNFRYQDSKLQEI 196
Query: 845 LR--------------------------------NTMNLLKENIFIQQFGNQPRVSAPYY 928
LR M+ L E F QF NQ YY
Sbjct: 197 LRPCYISVPSSSSSTLSNICLTKGLPETRFWVEGRRMDPLSEEEFYSQFYNQRVKHLCYY 256
Query: 929 LR-KTYLCYQVKGPDDSILDKGCFQNKK-KRHAEIRFIDKINSLNLDQNQCYRIICYVTW 1102
R K YLCYQ++ + KGC ++K K+HAEI F+DKI S+ L Q I CY+TW
Sbjct: 257 HRMKPYLCYQLEQFNGQAPLKGCLLSEKGKQHAEILFLDKIRSMELSQ---VTITCYLTW 313
Query: 1103 SPCHNCAKELGDFISNRHPLSLQLF 1177
SPC NCA +L F +R L L ++
Sbjct: 314 SPCPNCAWQLAAFKRDRPDLILHIY 338
Score = 83.2 bits (204), Expect = 4e-16
Identities = 58/178 (32%), Positives = 84/178 (47%), Gaps = 6/178 (3%)
Frame = +2
Query: 329 LSPRTFSFHFRNLRFAS----GRNRSYICCQVEGKN--CFFQGIFQNQVPPDPPCHAELC 490
LS F F N R R + Y+C Q+E N +G ++ HAE+
Sbjct: 236 LSEEEFYSQFYNQRVKHLCYYHRMKPYLCYQLEQFNGQAPLKGCLLSEKGKQ---HAEIL 292
Query: 491 FLSWFQSWGLSPDEHYYVTWFISWSPCCECAAKVAQFLEENRNVSLSLSAARLYYFWKSE 670
FL +S LS +T +++WSPC CA ++A F + ++ L + +RLY+ WK
Sbjct: 293 FLDKIRSMELS---QVTITCYLTWSPCPNCAWQLAAFKRDRPDLILHIYTSRLYFHWKRP 349
Query: 671 SREGLRRLSDLGAQVGIMSFQDFQHCWNNFVHNLGMPFQPWKKLHKNYQRLVTELKQI 844
++GL L G V +M F CW NFV N PF PWK L +R L++I
Sbjct: 350 FQKGLCSLWQSGILVDVMDLPQFTDCWTNFV-NPKRPFWPWKGLEIISRRTQRRLRRI 406
Score = 61.2 bits (147), Expect = 1e-09
Identities = 40/113 (35%), Positives = 60/113 (53%), Gaps = 7/113 (6%)
Frame = +2
Query: 860 NLLKENIFIQQFGNQPRVSAPYYLRKTYLCYQVKGPD-DS--ILDKGCFQNKKKRHAEIR 1030
NL+ + F F N + T+LCY+V D DS L G F+NK HAEI
Sbjct: 19 NLISQETFKFHFKNLGYAKGR---KDTFLCYEVTRKDCDSPVSLHHGVFKNKDNIHAEIC 75
Query: 1031 FI----DKINSLNLDQNQCYRIICYVTWSPCHNCAKELGDFISNRHPLSLQLF 1177
F+ DK+ + L + ++I Y++WSPC CA+++ F++ H LSL +F
Sbjct: 76 FLYWFHDKVLKV-LSPREEFKITWYMSWSPCFECAEQIVRFLATHHNLSLDIF 127
>ref|NP_033775.1| activation-induced cytidine deaminase [Mus musculus].
Length = 198
Score = 150 bits (380), Expect = 1e-36
Identities = 76/179 (42%), Positives = 109/179 (60%), Gaps = 6/179 (3%)
Frame = +2
Query: 329 LSPRTFSFHFRNLRFASGRNRSYICCQVEGKN----CFFQ-GIFQNQVPPDPPCHAELCF 493
+ + F +HF+N+R+A GR+ +Y+C V+ ++ C G +N+ CH EL F
Sbjct: 6 MKQKKFLYHFKNVRWAKGRHETYLCYVVKRRDSATSCSLDFGHLRNK----SGCHVELLF 61
Query: 494 LSWFQSWGLSPDEHYYVTWFISWSPCCECAAKVAQFLEENRNVSLSLSAARLYYFWKSES 673
L + W L P Y VTWF SWSPC +CA VA+FL N N+SL + ARLY+ ++
Sbjct: 62 LRYISDWDLDPGRCYRVTWFTSWSPCYDCARHVAEFLRWNPNLSLRIFTARLYFCEDRKA 121
Query: 674 R-EGLRRLSDLGAQVGIMSFQDFQHCWNNFVHNLGMPFQPWKKLHKNYQRLVTELKQIL 847
EGLRRL G Q+GIM+F+D+ +CWN FV N F+ W+ LH+N RL +L++IL
Sbjct: 122 EPEGLRRLHRAGVQIGIMTFKDYFYCWNTFVENRERTFKAWEGLHENSVRLTRQLRRIL 180
Score = 73.6 bits (179), Expect = 3e-13
Identities = 38/108 (35%), Positives = 61/108 (56%), Gaps = 3/108 (2%)
Frame = +2
Query: 863 LLKENIFIQQFGNQPRVSAPYYLRKTYLCYQVKGPDDSI---LDKGCFQNKKKRHAEIRF 1033
L+K+ F+ F N + +TYLCY VK D + LD G +NK H E+ F
Sbjct: 5 LMKQKKFLYHFKNVRWAKGRH---ETYLCYVVKRRDSATSCSLDFGHLRNKSGCHVELLF 61
Query: 1034 IDKINSLNLDQNQCYRIICYVTWSPCHNCAKELGDFISNRHPLSLQLF 1177
+ I+ +LD +CYR+ + +WSPC++CA+ + +F+ LSL++F
Sbjct: 62 LRYISDWDLDPGRCYRVTWFTSWSPCYDCARHVAEFLRWNPNLSLRIF 109
>ref|NP_033824.1| probable C->U-editing enzyme APOBEC-2 [Mus musculus].
Length = 224
Score = 100 bits (250), Expect = 2e-21
Identities = 55/177 (31%), Positives = 95/177 (53%), Gaps = 8/177 (4%)
Frame = +2
Query: 344 FSFHFRNLRFASGRNRSYICCQVE-----GKNCFFQGIFQNQVPPDPPCHAELCFLSWFQ 508
F F FRN+ ++SGRN++++C VE G+ QG +++ HAE F +
Sbjct: 52 FKFQFRNVEYSSGRNKTFLCYVVEVQSKGGQAQATQGYLEDE---HAGAHAEEAFFNTIL 108
Query: 509 SWGLSPDEHYYVTWFISWSPCCECAAKVAQFLEENRNVSLSLSAARLYYFWKSESREGLR 688
P Y VTW++S SPC CA ++ + L + +N+ L + +RL+ + + E + L+
Sbjct: 109 P-AFDPALKYNVTWYVSSSPCAACADRILKTLSKTKNLRLLILVSRLFMWEEPEVQAALK 167
Query: 689 RLSDLGAQVGIMSFQDFQHCWNNFV---HNLGMPFQPWKKLHKNYQRLVTELKQILR 850
+L + G ++ IM QDF++ W NFV F+PW+ + +N+ +L IL+
Sbjct: 168 KLKEAGCKLRIMKPQDFEYIWQNFVEQEEGESKAFEPWEDIQENFLYYEEKLADILK 224
>ref|NP_112436.1| C->U-editing enzyme APOBEC-1 isoform 1 [Mus musculus].
Length = 229
Score = 80.5 bits (197), Expect = 2e-15
Identities = 38/98 (38%), Positives = 58/98 (59%), Gaps = 1/98 (1%)
Frame = +2
Query: 476 HAELCFLSWFQSWG-LSPDEHYYVTWFISWSPCCECAAKVAQFLEENRNVSLSLSAARLY 652
H E+ FL F + P+ +TWF+SWSPC EC+ + +FL + V+L + ARLY
Sbjct: 61 HVEVNFLEKFTTERYFRPNTRCSITWFLSWSPCGECSRAITEFLSRHPYVTLFIYIARLY 120
Query: 653 YFWKSESREGLRRLSDLGAQVGIMSFQDFQHCWNNFVH 766
+ +R+GLR L G + IM+ Q++ +CW NFV+
Sbjct: 121 HHTDQRNRQGLRDLISSGVTIQIMTEQEYCYCWRNFVN 158
>ref|NP_001127863.1| C->U-editing enzyme APOBEC-1 isoform 2 [Mus musculus].
Length = 229
Score = 80.5 bits (197), Expect = 2e-15
Identities = 38/98 (38%), Positives = 58/98 (59%), Gaps = 1/98 (1%)
Frame = +2
Query: 476 HAELCFLSWFQSWG-LSPDEHYYVTWFISWSPCCECAAKVAQFLEENRNVSLSLSAARLY 652
H E+ FL F + P+ +TWF+SWSPC EC+ + +FL + V+L + ARLY
Sbjct: 61 HVEVNFLEKFTTERYFRPNTRCSITWFLSWSPCGECSRAITEFLSRHPYVTLFIYIARLY 120
Query: 653 YFWKSESREGLRRLSDLGAQVGIMSFQDFQHCWNNFVH 766
+ +R+GLR L G + IM+ Q++ +CW NFV+
Sbjct: 121 HHTDQRNRQGLRDLISSGVTIQIMTEQEYCYCWRNFVN 158
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 42,063,250
Number of extensions: 1267278
Number of successful extensions: 5658
Number of sequences better than 1.0e-05: 6
Number of HSP's gapped: 5610
Number of HSP's successfully gapped: 11
Length of query: 393
Length of database: 15,617,559
Length adjustment: 103
Effective length of query: 290
Effective length of database: 12,523,851
Effective search space: 3631916790
Effective search space used: 3631916790
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-004114
(1179 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001090915.1| DNA dC->dU-editing enzyme APOBEC-3F [Sus scr... 684 0.0
Alignment gi|XP_003126559.1| PREDICTED: activation-induced cytidine deami... 146 2e-35
Alignment gi|XP_001928934.2| PREDICTED: probable C->U-editing enzyme APOB... 101 9e-22
Alignment gi|XP_003128432.1| PREDICTED: probable C->U-editing enzyme APOB... 101 9e-22
Alignment gi|XP_003126567.1| PREDICTED: c->U-editing enzyme APOBEC-1-like... 80 2e-15
Alignment gi|XP_003128431.2| PREDICTED: probable C->U-editing enzyme APOB... 61 1e-09
>ref|NP_001090915.1| DNA dC->dU-editing enzyme APOBEC-3F [Sus scrofa].
Length = 418
Score = 684 bits (1764), Expect = 0.0
Identities = 315/318 (99%), Positives = 315/318 (99%)
Frame = +2
Query: 224 MDPQRLRQWPGPGPASRGGYGQRPRIRNPEEWFHELSPRTFSFHFRNLRFASGRNRSYIC 403
MDPQRLRQWPGPGPASRGGYGQRPRIRNPEEWFHELSPRTFSFHFRNLRFASGRNRSYIC
Sbjct: 1 MDPQRLRQWPGPGPASRGGYGQRPRIRNPEEWFHELSPRTFSFHFRNLRFASGRNRSYIC 60
Query: 404 CQVEGKNCFFQGIFQNQVPPDPPCHAELCFLSWFQSWGLSPDEHYYVTWFISWSPCCECA 583
CQVEGKNCFFQGIFQNQVPPDPPCHAELCFLSWFQSWGLSPDEHYYVTWFISWSPCCECA
Sbjct: 61 CQVEGKNCFFQGIFQNQVPPDPPCHAELCFLSWFQSWGLSPDEHYYVTWFISWSPCCECA 120
Query: 584 AKVAQFLEENRNVSLSLSAARLYYFWKSESREGLRRLSDLGAQVGIMSFQDFQHCWNNFV 763
AKVAQFLEENRNVSLSLSAARLYYFWKSESREGLRRLSDLGAQVGIMSFQDFQHCWNNFV
Sbjct: 121 AKVAQFLEENRNVSLSLSAARLYYFWKSESREGLRRLSDLGAQVGIMSFQDFQHCWNNFV 180
Query: 764 HNLGMPFQPWKKLHKNYQRLVTELKQILRNTMNLLKENIFIQQFGNQPRVSAPYYLRKTY 943
HNLGMPFQPWKKLHKNYQRLVTELKQILRNTMNLLKENIFIQQFGNQPRV APYYLRKTY
Sbjct: 181 HNLGMPFQPWKKLHKNYQRLVTELKQILRNTMNLLKENIFIQQFGNQPRVLAPYYLRKTY 240
Query: 944 LCYQVKGPDDSILDKGCFQNKKKRHAEIRFIDKINSLNLDQNQCYRIICYVTWSPCHNCA 1123
LCYQVKGPDDSILDKGCFQNKKKRHAEIRFIDKINSLNLDQNQCYRIICYVTWSPCHNCA
Sbjct: 241 LCYQVKGPDDSILDKGCFQNKKKRHAEIRFIDKINSLNLDQNQCYRIICYVTWSPCHNCA 300
Query: 1124 KELGDFISNRHPLSLQLF 1177
KEL DFISNRH LSLQLF
Sbjct: 301 KELVDFISNRHHLSLQLF 318
Score = 100 bits (250), Expect = 1e-21
Identities = 51/156 (32%), Positives = 84/156 (53%), Gaps = 2/156 (1%)
Frame = +2
Query: 389 RSYICCQVEGKN--CFFQGIFQNQVPPDPPCHAELCFLSWFQSWGLSPDEHYYVTWFISW 562
++Y+C QV+G + +G FQN+ HAE+ F+ S L ++ Y + +++W
Sbjct: 238 KTYLCYQVKGPDDSILDKGCFQNKKKR----HAEIRFIDKINSLNLDQNQCYRIICYVTW 293
Query: 563 SPCCECAAKVAQFLEENRNVSLSLSAARLYYFWKSESREGLRRLSDLGAQVGIMSFQDFQ 742
SPC CA ++ F+ ++SL L A+RLY+ W + GL+RL V +M +F+
Sbjct: 294 SPCHNCAKELVDFISNRHHLSLQLFASRLYFHWVRCYQRGLQRLQAKRVSVAVMKGPEFK 353
Query: 743 HCWNNFVHNLGMPFQPWKKLHKNYQRLVTELKQILR 850
CW FV + G F W+KL + + + L +ILR
Sbjct: 354 DCWEKFVDHQGRSFPSWEKLEQYSESISRRLSRILR 389
>ref|XP_003126559.1| PREDICTED: activation-induced cytidine deaminase-like [Sus scrofa].
Length = 198
Score = 146 bits (369), Expect = 2e-35
Identities = 76/180 (42%), Positives = 107/180 (59%), Gaps = 7/180 (3%)
Frame = +2
Query: 329 LSPRTFSFHFRNLRFASGRNRSYICCQVEGKNCFFQ-----GIFQNQVPPDPPCHAELCF 493
+ R F + F+N+R+A GR+ +Y+C V+ ++ G +N+ CH EL F
Sbjct: 6 MKQRQFLYQFKNVRWAKGRHETYLCYVVKRRDSATSFSLDFGHLRNK----SGCHVELLF 61
Query: 494 LSWFQSWGLSPDEHYYVTWFISWSPCCECAAKVAQFLEENRNVSLSLSAARLYYF--WKS 667
L + W L P Y VTWF SWSPC +CA VA FL N N+SL + ARLY+ +K+
Sbjct: 62 LRYISDWDLDPGRCYRVTWFTSWSPCYDCARHVANFLRGNPNLSLRIFTARLYFCDGYKA 121
Query: 668 ESREGLRRLSDLGAQVGIMSFQDFQHCWNNFVHNLGMPFQPWKKLHKNYQRLVTELKQIL 847
E EGLRRL G Q+ IM+F+D+ +CWN FV N F+ W+ LH+N RL +L++IL
Sbjct: 122 EP-EGLRRLHRAGVQIAIMTFKDYFYCWNTFVENRERSFKAWEGLHENSVRLTRQLRRIL 180
Score = 76.6 bits (187), Expect = 2e-14
Identities = 39/108 (36%), Positives = 62/108 (57%), Gaps = 3/108 (2%)
Frame = +2
Query: 863 LLKENIFIQQFGNQPRVSAPYYLRKTYLCYQVKGPDDSI---LDKGCFQNKKKRHAEIRF 1033
L+K+ F+ QF N + +TYLCY VK D + LD G +NK H E+ F
Sbjct: 5 LMKQRQFLYQFKNVRWAKGRH---ETYLCYVVKRRDSATSFSLDFGHLRNKSGCHVELLF 61
Query: 1034 IDKINSLNLDQNQCYRIICYVTWSPCHNCAKELGDFISNRHPLSLQLF 1177
+ I+ +LD +CYR+ + +WSPC++CA+ + +F+ LSL++F
Sbjct: 62 LRYISDWDLDPGRCYRVTWFTSWSPCYDCARHVANFLRGNPNLSLRIF 109
>ref|XP_001928934.2| PREDICTED: probable C->U-editing enzyme APOBEC-2-like isoform 1
[Sus scrofa].
Length = 279
Score = 101 bits (251), Expect = 9e-22
Identities = 55/177 (31%), Positives = 94/177 (53%), Gaps = 8/177 (4%)
Frame = +2
Query: 344 FSFHFRNLRFASGRNRSYICCQVEGKNCFFQ-----GIFQNQVPPDPPCHAELCFLSWFQ 508
F F FRN+ ++SGRN++++C +E ++ Q G +++ HAE F +
Sbjct: 107 FKFQFRNVEYSSGRNKTFLCYVIEAQSKGGQVQATRGYLEDE---HAAAHAEEAFFNTIL 163
Query: 509 SWGLSPDEHYYVTWFISWSPCCECAAKVAQFLEENRNVSLSLSAARLYYFWKSESREGLR 688
P Y VTW++S SPC CA ++ + L + +N+ L + RL+ + + E + LR
Sbjct: 164 P-AFDPAVRYVVTWYVSSSPCAACADRIIKTLNKAKNLRLLILVGRLFMWEEPEIQAALR 222
Query: 689 RLSDLGAQVGIMSFQDFQHCWNNFV---HNLGMPFQPWKKLHKNYQRLVTELKQILR 850
RL + G ++ IM QDF++ W NFV F+PW+ + +N+ +L IL+
Sbjct: 223 RLKEAGCRLRIMKPQDFEYVWQNFVEQEEGESKAFEPWEDIQENFLYYEEKLADILK 279
>ref|XP_003128432.1| PREDICTED: probable C->U-editing enzyme APOBEC-2-like isoform 1
[Sus scrofa].
Length = 224
Score = 101 bits (251), Expect = 9e-22
Identities = 55/177 (31%), Positives = 94/177 (53%), Gaps = 8/177 (4%)
Frame = +2
Query: 344 FSFHFRNLRFASGRNRSYICCQVEGKNCFFQ-----GIFQNQVPPDPPCHAELCFLSWFQ 508
F F FRN+ ++SGRN++++C +E ++ Q G +++ HAE F +
Sbjct: 52 FKFQFRNVEYSSGRNKTFLCYVIEAQSKGGQVQATRGYLEDE---HAAAHAEEAFFNTIL 108
Query: 509 SWGLSPDEHYYVTWFISWSPCCECAAKVAQFLEENRNVSLSLSAARLYYFWKSESREGLR 688
P Y VTW++S SPC CA ++ + L + +N+ L + RL+ + + E + LR
Sbjct: 109 P-AFDPAVRYVVTWYVSSSPCAACADRIIKTLNKAKNLRLLILVGRLFMWEEPEIQAALR 167
Query: 689 RLSDLGAQVGIMSFQDFQHCWNNFV---HNLGMPFQPWKKLHKNYQRLVTELKQILR 850
RL + G ++ IM QDF++ W NFV F+PW+ + +N+ +L IL+
Sbjct: 168 RLKEAGCRLRIMKPQDFEYVWQNFVEQEEGESKAFEPWEDIQENFLYYEEKLADILK 224
>ref|XP_003126567.1| PREDICTED: c->U-editing enzyme APOBEC-1-like [Sus scrofa].
Length = 232
Score = 80.5 bits (197), Expect = 2e-15
Identities = 39/111 (35%), Positives = 63/111 (56%), Gaps = 1/111 (0%)
Frame = +2
Query: 476 HAELCFLSWFQSWG-LSPDEHYYVTWFISWSPCCECAAKVAQFLEENRNVSLSLSAARLY 652
H E FL+ S P H + WF+SWSPC EC+ + +FL+++ +V+L + ARL+
Sbjct: 57 HVERNFLAKITSERHFHPSVHCSIVWFLSWSPCWECSEAIREFLDQHPSVTLVIYVARLF 116
Query: 653 YFWKSESREGLRRLSDLGAQVGIMSFQDFQHCWNNFVHNLGMPFQPWKKLH 805
++R+GLR L + G + IM ++ +CW NFV+ + P K+ H
Sbjct: 117 QHMDPQNRQGLRDLVNHGVTIQIMGAPEYDYCWRNFVN-----YPPGKEAH 162
>ref|XP_003128431.2| PREDICTED: probable C->U-editing enzyme APOBEC-2-like [Sus scrofa].
Length = 193
Score = 60.8 bits (146), Expect = 1e-09
Identities = 42/177 (23%), Positives = 73/177 (41%), Gaps = 8/177 (4%)
Frame = +2
Query: 344 FSFHFRNLRFASGRNRSYICCQVEGKNCFFQ-----GIFQNQVPPDPPCHAELCFLSWFQ 508
F F FRN+ ++SGRN++++C +E ++ Q G +++ HAE F +
Sbjct: 54 FKFQFRNVEYSSGRNKTFLCYVIEAQSKGGQVQATRGYLEDE---HAAAHAEEAFFNTIL 110
Query: 509 SWGLSPDEHYYVTWFISWSPCCECAAKVAQFLEENRNVSLSLSAARLYYFWKSESREGLR 688
P Y VTW++S SPC CA ++ + L + +N+ L +
Sbjct: 111 P-AFDPAVRYVVTWYVSSSPCAACADRIIKTLNKAKNLRLLILVG--------------- 154
Query: 689 RLSDLGAQVGIMSFQDFQHCWNNFV---HNLGMPFQPWKKLHKNYQRLVTELKQILR 850
+ W NFV F+PW+ + +N+ +L IL+
Sbjct: 155 ------------------YVWQNFVEQEEGESKAFEPWEDIQENFLYYEEKLADILK 193
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 31,880,100
Number of extensions: 1004446
Number of successful extensions: 4829
Number of sequences better than 1.0e-05: 6
Number of HSP's gapped: 4798
Number of HSP's successfully gapped: 8
Length of query: 393
Length of database: 11,343,932
Length adjustment: 101
Effective length of query: 292
Effective length of database: 8,829,335
Effective search space: 2578165820
Effective search space used: 2578165820
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-004114
(1179 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr05 309 2e-81
>Sscrofa_Chr05
|| Length = 111506441
Score = 309 bits (156), Expect = 2e-81
Identities = 159/160 (99%)
Strand = Plus / Plus
Query: 847 cagaaacacaatgaatctactaaaagaaaatatattcatacaacagtttggcaaccagcc 906
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 6373933 cagaaacacaatgaatctactaaaagaaaatatattcaaacaacagtttggcaaccagcc 6373992
Query: 907 ccgggtctcggcgccctactatctgaggaagacctacttgtgctaccaagtgaaggggcc 966
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6373993 ccgggtctcggcgccctactatctgaggaagacctacttgtgctaccaagtgaaggggcc 6374052
Query: 967 cgatgactccattcttgacaaaggctgcttccaaaacaag 1006
||||||||||||||||||||||||||||||||||||||||
Sbjct: 6374053 cgatgactccattcttgacaaaggctgcttccaaaacaag 6374092
Score = 307 bits (155), Expect = 7e-81
Identities = 170/175 (97%)
Strand = Plus / Plus
Query: 1005 agaaaaagcgacatgcagaaattcgttttattgacaagatcaattccttgaatctagacc 1064
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 6375019 agaaaaagcgacatgcagaaattcgttttattgacaagatcaattccttgaatctggacc 6375078
Query: 1065 agaaccagtgctacagaatcatctgctatgtcacctggagcccttgccacaactgtgcca 1124
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 6375079 agaaccagtgctacagaatcatctgctatgtcacctggagcccttgtcacaactgtgcca 6375138
Query: 1125 aggagctgggtgatttcatcagcaatcggcacccactgagcctgcagctctttgc 1179
||||||||| ||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 6375139 aggagctggttgatttcatcagcaatcggcaccacctgagcctgcagctctttgc 6375193
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 37,611,157
Number of extensions: 275
Number of successful extensions: 275
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 275
Number of HSP's successfully gapped: 2
Length of query: 1179
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1158
Effective length of database: 2,808,413,156
Effective search space: 3252142434648
Effective search space used: 3252142434648
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)