Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-004142
(1057 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_002697113.1| PREDICTED: abhydrolase domain containing 14A... 323 2e-88
Alignment gi|XP_593087.3| PREDICTED: abhydrolase domain containing 14A is... 323 2e-88
Alignment gi|NP_001098911.1| abhydrolase domain-containing protein 14B [B... 119 5e-27
>ref|XP_002697113.1| PREDICTED: abhydrolase domain containing 14A [Bos taurus].
Length = 307
Score = 323 bits (827), Expect = 2e-88
Identities = 169/217 (77%), Positives = 175/217 (80%), Gaps = 2/217 (0%)
Frame = +2
Query: 380 TVVQSSMSRSQVAXXXXXXXXXXXXXXXXXXPS--EQTSWLWGDPNITILAGLTPGDSPL 553
TVVQ+SMSRSQVA P EQTSWLWGD N+TILAGLTPG SP+
Sbjct: 58 TVVQTSMSRSQVALLGLGLGLLFMLLLYVGLPGPPEQTSWLWGDSNVTILAGLTPGSSPI 117
Query: 554 FYREVLPLHRARRVDVVLLHGKAFNSHTWEQLGTLQLLAQRGYRAVALDLPGFGNSAPSK 733
FYREVLP HRA RVDVVLLHGKAF+S TWEQLGTLQLLAQRGYRAVALDLPGFGNSAPSK
Sbjct: 118 FYREVLPFHRAHRVDVVLLHGKAFSSRTWEQLGTLQLLAQRGYRAVALDLPGFGNSAPSK 177
Query: 734 EASTEAGRAXXXXXXXXXXXXQNAVLVSPSLSGRYALPFLMRGHHQLHGFVPIAPASTQN 913
EASTEAGRA QNAVLVSPSLSGRYALPFLMRGHHQL GFVPIAPASTQN
Sbjct: 178 EASTEAGRAELLERVLQDLNVQNAVLVSPSLSGRYALPFLMRGHHQLRGFVPIAPASTQN 237
Query: 914 YTQEQFWAVKTPTLILYGELDRILAQESLQQLRPLPN 1024
YTQEQF AVKTPTLILYGELDR LA+ESL+QLR LPN
Sbjct: 238 YTQEQFQAVKTPTLILYGELDRTLARESLRQLRHLPN 274
>ref|XP_593087.3| PREDICTED: abhydrolase domain containing 14A isoform 1 [Bos taurus].
Length = 309
Score = 323 bits (827), Expect = 2e-88
Identities = 169/217 (77%), Positives = 175/217 (80%), Gaps = 2/217 (0%)
Frame = +2
Query: 380 TVVQSSMSRSQVAXXXXXXXXXXXXXXXXXXPS--EQTSWLWGDPNITILAGLTPGDSPL 553
TVVQ+SMSRSQVA P EQTSWLWGD N+TILAGLTPG SP+
Sbjct: 60 TVVQTSMSRSQVALLGLGLGLLFMLLLYVGLPGPPEQTSWLWGDSNVTILAGLTPGSSPI 119
Query: 554 FYREVLPLHRARRVDVVLLHGKAFNSHTWEQLGTLQLLAQRGYRAVALDLPGFGNSAPSK 733
FYREVLP HRA RVDVVLLHGKAF+S TWEQLGTLQLLAQRGYRAVALDLPGFGNSAPSK
Sbjct: 120 FYREVLPFHRAHRVDVVLLHGKAFSSRTWEQLGTLQLLAQRGYRAVALDLPGFGNSAPSK 179
Query: 734 EASTEAGRAXXXXXXXXXXXXQNAVLVSPSLSGRYALPFLMRGHHQLHGFVPIAPASTQN 913
EASTEAGRA QNAVLVSPSLSGRYALPFLMRGHHQL GFVPIAPASTQN
Sbjct: 180 EASTEAGRAELLERVLQDLNVQNAVLVSPSLSGRYALPFLMRGHHQLRGFVPIAPASTQN 239
Query: 914 YTQEQFWAVKTPTLILYGELDRILAQESLQQLRPLPN 1024
YTQEQF AVKTPTLILYGELDR LA+ESL+QLR LPN
Sbjct: 240 YTQEQFQAVKTPTLILYGELDRTLARESLRQLRHLPN 276
>ref|NP_001098911.1| abhydrolase domain-containing protein 14B [Bos taurus].
Length = 210
Score = 119 bits (298), Expect = 5e-27
Identities = 71/161 (44%), Positives = 91/161 (56%), Gaps = 3/161 (1%)
Frame = +2
Query: 551 LFYREVLPLH-RARRVDVVLLHGKAFNSHTWEQLGTLQLLAQRGYRAVALDLPGFGNSAP 727
LF+RE LP +A R V+LLHG F+S TW+ LGTL LAQ GYRAVA+DLPG G S
Sbjct: 18 LFFREALPGGGQAARFSVLLLHGIRFSSETWQNLGTLHRLAQAGYRAVAIDLPGLGRSKE 77
Query: 728 SKEAST--EAGRAXXXXXXXXXXXXQNAVLVSPSLSGRYALPFLMRGHHQLHGFVPIAPA 901
+K + E + V++SPSLSG Y+LPFL QL G+VP+AP
Sbjct: 78 AKAPAPIGELVPSSFLAAVVDALDLGPPVVISPSLSGMYSLPFLTAPGSQLRGYVPVAPI 137
Query: 902 STQNYTQEQFWAVKTPTLILYGELDRILAQESLQQLRPLPN 1024
T + VK LI+YG+ D + Q S + L+ LPN
Sbjct: 138 CTDKINAADYARVKASVLIVYGDQDP-MGQTSFEHLKQLPN 177
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 45,381,310
Number of extensions: 1449445
Number of successful extensions: 7737
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 7687
Number of HSP's successfully gapped: 3
Length of query: 352
Length of database: 17,681,374
Length adjustment: 103
Effective length of query: 249
Effective length of database: 14,273,310
Effective search space: 3554054190
Effective search space used: 3554054190
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-004142
(1057 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_541859.2| PREDICTED: similar to abhydrolase domain contai... 333 7e-93
Alignment gi|XP_541860.2| PREDICTED: similar to Y55F3AM.10 [Canis familia... 114 1e-25
>ref|XP_541859.2| PREDICTED: similar to abhydrolase domain containing 14A [Canis
familiaris].
Length = 354
Score = 333 bits (854), Expect(2) = 7e-93
Identities = 168/215 (78%), Positives = 179/215 (83%)
Frame = +2
Query: 380 TVVQSSMSRSQVAXXXXXXXXXXXXXXXXXXPSEQTSWLWGDPNITILAGLTPGDSPLFY 559
TVVQ+SMSR QVA P EQTSWLWG PN+TILAGLTPG+SP+FY
Sbjct: 107 TVVQTSMSRFQVALLGLGLLLMLLLYVGLPGPPEQTSWLWGGPNVTILAGLTPGNSPIFY 166
Query: 560 REVLPLHRARRVDVVLLHGKAFNSHTWEQLGTLQLLAQRGYRAVALDLPGFGNSAPSKEA 739
REVLPLHRARRV+VVLLHGKAFNSHTWEQLGTLQLLAQRGYRAVALDLPGFGNSAPSKEA
Sbjct: 167 REVLPLHRARRVEVVLLHGKAFNSHTWEQLGTLQLLAQRGYRAVALDLPGFGNSAPSKEA 226
Query: 740 STEAGRAXXXXXXXXXXXXQNAVLVSPSLSGRYALPFLMRGHHQLHGFVPIAPASTQNYT 919
+TEAGRA NA+LVSPSLSGRYALPFL++GHHQL GFVPIAPASTQNYT
Sbjct: 227 NTEAGRAELLERVLRDLEVHNAILVSPSLSGRYALPFLIQGHHQLRGFVPIAPASTQNYT 286
Query: 920 QEQFWAVKTPTLILYGELDRILAQESLQQLRPLPN 1024
QEQFWAVKTPTLILYGELDRILA+ESL+QLR LPN
Sbjct: 287 QEQFWAVKTPTLILYGELDRILARESLRQLRHLPN 321
Score = 26.9 bits (58), Expect(2) = 7e-93
Identities = 11/11 (100%), Positives = 11/11 (100%)
Frame = +1
Query: 1024 HSVVKLRDAGH 1056
HSVVKLRDAGH
Sbjct: 322 HSVVKLRDAGH 332
Score = 58.2 bits (139), Expect = 1e-08
Identities = 27/38 (71%), Positives = 30/38 (78%)
Frame = +3
Query: 12 SSPQSGGGSALVAALFGCWLLLGGARPAVAGRVNPVGP 125
SS QS GG A+VAALFGCW +GGARP V+G V PVGP
Sbjct: 69 SSLQSRGGGAMVAALFGCWFRVGGARPGVSGPVIPVGP 106
>ref|XP_541860.2| PREDICTED: similar to Y55F3AM.10 [Canis familiaris].
Length = 300
Score = 114 bits (286), Expect = 1e-25
Identities = 70/161 (43%), Positives = 92/161 (57%), Gaps = 3/161 (1%)
Frame = +2
Query: 551 LFYREVLPLH-RARRVDVVLLHGKAFNSHTWEQLGTLQLLAQRGYRAVALDLPGFGNS-- 721
LF+RE P +A V+LLHG F+S TW++LGTL LAQ GYRAVA+DLPG G S
Sbjct: 108 LFFREGRPGGGQAASFSVLLLHGIRFSSETWQKLGTLHKLAQAGYRAVAIDLPGLGRSKE 167
Query: 722 APSKEASTEAGRAXXXXXXXXXXXXQNAVLVSPSLSGRYALPFLMRGHHQLHGFVPIAPA 901
A + E + + V++SPSLSG Y+LPFL QL G+VP+AP
Sbjct: 168 AVAPAPIGELVPSSFLAAVVDALDLGSPVVISPSLSGMYSLPFLTAPGSQLRGYVPVAPI 227
Query: 902 STQNYTQEQFWAVKTPTLILYGELDRILAQESLQQLRPLPN 1024
T + +VKT TLI+YG+ D + S + L+ LPN
Sbjct: 228 CTDKINAADYASVKTSTLIVYGDQDP-MGLTSFEHLKQLPN 267
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 47,227,191
Number of extensions: 1488775
Number of successful extensions: 7771
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 7676
Number of HSP's successfully gapped: 4
Length of query: 352
Length of database: 18,874,504
Length adjustment: 104
Effective length of query: 248
Effective length of database: 15,407,560
Effective search space: 3821074880
Effective search space used: 3821074880
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-004142
(1057 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_056222.2| abhydrolase domain-containing protein 14A [Homo... 330 3e-91
Alignment gi|NP_001139786.1| abhydrolase domain-containing protein 14B [H... 127 2e-29
Alignment gi|NP_116139.1| abhydrolase domain-containing protein 14B [Homo... 127 2e-29
>ref|NP_056222.2| abhydrolase domain-containing protein 14A [Homo sapiens].
Length = 271
Score = 330 bits (845), Expect(2) = 3e-91
Identities = 167/215 (77%), Positives = 178/215 (82%)
Frame = +2
Query: 380 TVVQSSMSRSQVAXXXXXXXXXXXXXXXXXXPSEQTSWLWGDPNITILAGLTPGDSPLFY 559
TVVQ+SMSRSQVA P EQTS LWGDPN+T+LAGLTPG+SP+FY
Sbjct: 24 TVVQTSMSRSQVALLGLSLLLMLLLYVGLPGPPEQTSCLWGDPNVTVLAGLTPGNSPIFY 83
Query: 560 REVLPLHRARRVDVVLLHGKAFNSHTWEQLGTLQLLAQRGYRAVALDLPGFGNSAPSKEA 739
REVLPL++A RV+VVLLHGKAFNSHTWEQLGTLQLL+QRGYRAVALDLPGFGNSAPSKEA
Sbjct: 84 REVLPLNQAHRVEVVLLHGKAFNSHTWEQLGTLQLLSQRGYRAVALDLPGFGNSAPSKEA 143
Query: 740 STEAGRAXXXXXXXXXXXXQNAVLVSPSLSGRYALPFLMRGHHQLHGFVPIAPASTQNYT 919
STEAGRA QNAVLVSPSLSG YALPFLMRGHHQLHGFVPIAP STQNYT
Sbjct: 144 STEAGRAALLERALRDLEVQNAVLVSPSLSGHYALPFLMRGHHQLHGFVPIAPTSTQNYT 203
Query: 920 QEQFWAVKTPTLILYGELDRILAQESLQQLRPLPN 1024
QEQFWAVKTPTLILYGELD ILA+ESL+QLR LPN
Sbjct: 204 QEQFWAVKTPTLILYGELDHILARESLRQLRHLPN 238
Score = 25.0 bits (53), Expect(2) = 3e-91
Identities = 10/11 (90%), Positives = 11/11 (100%)
Frame = +1
Query: 1024 HSVVKLRDAGH 1056
HSVVKLR+AGH
Sbjct: 239 HSVVKLRNAGH 249
>ref|NP_001139786.1| abhydrolase domain-containing protein 14B [Homo sapiens].
Length = 210
Score = 127 bits (318), Expect = 2e-29
Identities = 75/163 (46%), Positives = 93/163 (57%), Gaps = 5/163 (3%)
Frame = +2
Query: 551 LFYREVLPLHRARRVDVVLLHGKAFNSHTWEQLGTLQLLAQRGYRAVALDLPGFGNSAPS 730
LF+RE LP R V+LLHG F+S TW+ LGTL LAQ GYRAVA+DLPG G+ S
Sbjct: 19 LFFREALPGSGQARFSVLLLHGIRFSSETWQNLGTLHRLAQAGYRAVAIDLPGLGH---S 75
Query: 731 KEAST-----EAGRAXXXXXXXXXXXXQNAVLVSPSLSGRYALPFLMRGHHQLHGFVPIA 895
KEA+ E V++SPSLSG Y+LPFL QL GFVP+A
Sbjct: 76 KEAAAPAPIGELAPGSFLAAVVDALELGPPVVISPSLSGMYSLPFLTAPGSQLPGFVPVA 135
Query: 896 PASTQNYTQEQFWAVKTPTLILYGELDRILAQESLQQLRPLPN 1024
P T + +VKTP LI+YG+ D + Q S + L+ LPN
Sbjct: 136 PICTDKINAANYASVKTPALIVYGDQDP-MGQTSFEHLKQLPN 177
>ref|NP_116139.1| abhydrolase domain-containing protein 14B [Homo sapiens].
Length = 210
Score = 127 bits (318), Expect = 2e-29
Identities = 75/163 (46%), Positives = 93/163 (57%), Gaps = 5/163 (3%)
Frame = +2
Query: 551 LFYREVLPLHRARRVDVVLLHGKAFNSHTWEQLGTLQLLAQRGYRAVALDLPGFGNSAPS 730
LF+RE LP R V+LLHG F+S TW+ LGTL LAQ GYRAVA+DLPG G+ S
Sbjct: 19 LFFREALPGSGQARFSVLLLHGIRFSSETWQNLGTLHRLAQAGYRAVAIDLPGLGH---S 75
Query: 731 KEAST-----EAGRAXXXXXXXXXXXXQNAVLVSPSLSGRYALPFLMRGHHQLHGFVPIA 895
KEA+ E V++SPSLSG Y+LPFL QL GFVP+A
Sbjct: 76 KEAAAPAPIGELAPGSFLAAVVDALELGPPVVISPSLSGMYSLPFLTAPGSQLPGFVPVA 135
Query: 896 PASTQNYTQEQFWAVKTPTLILYGELDRILAQESLQQLRPLPN 1024
P T + +VKTP LI+YG+ D + Q S + L+ LPN
Sbjct: 136 PICTDKINAANYASVKTPALIVYGDQDP-MGQTSFEHLKQLPN 177
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 46,259,656
Number of extensions: 1450445
Number of successful extensions: 7465
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 7404
Number of HSP's successfully gapped: 4
Length of query: 352
Length of database: 18,297,164
Length adjustment: 104
Effective length of query: 248
Effective length of database: 14,868,908
Effective search space: 3687489184
Effective search space used: 3687489184
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-004142
(1057 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_666031.2| abhydrolase domain-containing protein 14A isofo... 276 3e-75
Alignment gi|NP_001103741.1| abhydrolase domain-containing protein 14A is... 276 3e-75
Alignment gi|NP_001103742.1| abhydrolase domain-containing protein 14A is... 265 6e-72
Alignment gi|NP_083907.3| abhydrolase domain-containing protein 14B [Mus ... 122 6e-28
>ref|NP_666031.2| abhydrolase domain-containing protein 14A isoform a [Mus musculus].
Length = 248
Score = 276 bits (706), Expect(2) = 3e-75
Identities = 142/214 (66%), Positives = 157/214 (73%)
Frame = +2
Query: 383 VVQSSMSRSQVAXXXXXXXXXXXXXXXXXXPSEQTSWLWGDPNITILAGLTPGDSPLFYR 562
V + MSR Q A P EQTS LW PN+T+L GLT G+S +FYR
Sbjct: 2 VQKKFMSRYQAALLGLGLLLVFLLYMGLPGPPEQTSRLWRGPNVTVLTGLTRGNSRIFYR 61
Query: 563 EVLPLHRARRVDVVLLHGKAFNSHTWEQLGTLQLLAQRGYRAVALDLPGFGNSAPSKEAS 742
EVLP+ +ARR +VV LHGKAFNSHTWEQLGTLQLL++RGYRAVA+DLPGFGNSAPS+E S
Sbjct: 62 EVLPIQQARRAEVVFLHGKAFNSHTWEQLGTLQLLSERGYRAVAIDLPGFGNSAPSEEVS 121
Query: 743 TEAGRAXXXXXXXXXXXXQNAVLVSPSLSGRYALPFLMRGHHQLHGFVPIAPASTQNYTQ 922
TEAGR QN VLVSPSLSG YALPFLM+ HHQL GFVPIAP ST+NY Q
Sbjct: 122 TEAGRVELLERVFQDLQVQNTVLVSPSLSGSYALPFLMQNHHQLRGFVPIAPTSTRNYAQ 181
Query: 923 EQFWAVKTPTLILYGELDRILAQESLQQLRPLPN 1024
EQF AVKTPTLILYGELD LA+ESLQQLR LPN
Sbjct: 182 EQFGAVKTPTLILYGELDHTLARESLQQLRHLPN 215
Score = 25.0 bits (53), Expect(2) = 3e-75
Identities = 10/11 (90%), Positives = 10/11 (90%)
Frame = +1
Query: 1024 HSVVKLRDAGH 1056
HSVVKL DAGH
Sbjct: 216 HSVVKLHDAGH 226
>ref|NP_001103741.1| abhydrolase domain-containing protein 14A isoform a [Mus musculus].
Length = 248
Score = 276 bits (706), Expect(2) = 3e-75
Identities = 142/214 (66%), Positives = 157/214 (73%)
Frame = +2
Query: 383 VVQSSMSRSQVAXXXXXXXXXXXXXXXXXXPSEQTSWLWGDPNITILAGLTPGDSPLFYR 562
V + MSR Q A P EQTS LW PN+T+L GLT G+S +FYR
Sbjct: 2 VQKKFMSRYQAALLGLGLLLVFLLYMGLPGPPEQTSRLWRGPNVTVLTGLTRGNSRIFYR 61
Query: 563 EVLPLHRARRVDVVLLHGKAFNSHTWEQLGTLQLLAQRGYRAVALDLPGFGNSAPSKEAS 742
EVLP+ +ARR +VV LHGKAFNSHTWEQLGTLQLL++RGYRAVA+DLPGFGNSAPS+E S
Sbjct: 62 EVLPIQQARRAEVVFLHGKAFNSHTWEQLGTLQLLSERGYRAVAIDLPGFGNSAPSEEVS 121
Query: 743 TEAGRAXXXXXXXXXXXXQNAVLVSPSLSGRYALPFLMRGHHQLHGFVPIAPASTQNYTQ 922
TEAGR QN VLVSPSLSG YALPFLM+ HHQL GFVPIAP ST+NY Q
Sbjct: 122 TEAGRVELLERVFQDLQVQNTVLVSPSLSGSYALPFLMQNHHQLRGFVPIAPTSTRNYAQ 181
Query: 923 EQFWAVKTPTLILYGELDRILAQESLQQLRPLPN 1024
EQF AVKTPTLILYGELD LA+ESLQQLR LPN
Sbjct: 182 EQFGAVKTPTLILYGELDHTLARESLQQLRHLPN 215
Score = 25.0 bits (53), Expect(2) = 3e-75
Identities = 10/11 (90%), Positives = 10/11 (90%)
Frame = +1
Query: 1024 HSVVKLRDAGH 1056
HSVVKL DAGH
Sbjct: 216 HSVVKLHDAGH 226
>ref|NP_001103742.1| abhydrolase domain-containing protein 14A isoform b [Mus musculus].
Length = 266
Score = 265 bits (677), Expect(2) = 6e-72
Identities = 142/232 (61%), Positives = 157/232 (67%), Gaps = 18/232 (7%)
Frame = +2
Query: 383 VVQSSMSRSQVAXXXXXXXXXXXXXXXXXXPSEQTSWLWGDPNITILAGLTPGDSPLFYR 562
V + MSR Q A P EQTS LW PN+T+L GLT G+S +FYR
Sbjct: 2 VQKKFMSRYQAALLGLGLLLVFLLYMGLPGPPEQTSRLWRGPNVTVLTGLTRGNSRIFYR 61
Query: 563 EVLPLHRARRVDVVLLHGKAFNSHTWEQLGTLQLLAQRGYRAVALDLPG----------- 709
EVLP+ +ARR +VV LHGKAFNSHTWEQLGTLQLL++RGYRAVA+DLPG
Sbjct: 62 EVLPIQQARRAEVVFLHGKAFNSHTWEQLGTLQLLSERGYRAVAIDLPGDPEHFVAPMRL 121
Query: 710 -------FGNSAPSKEASTEAGRAXXXXXXXXXXXXQNAVLVSPSLSGRYALPFLMRGHH 868
FGNSAPS+E STEAGR QN VLVSPSLSG YALPFLM+ HH
Sbjct: 122 CLLLFLGFGNSAPSEEVSTEAGRVELLERVFQDLQVQNTVLVSPSLSGSYALPFLMQNHH 181
Query: 869 QLHGFVPIAPASTQNYTQEQFWAVKTPTLILYGELDRILAQESLQQLRPLPN 1024
QL GFVPIAP ST+NY QEQF AVKTPTLILYGELD LA+ESLQQLR LPN
Sbjct: 182 QLRGFVPIAPTSTRNYAQEQFGAVKTPTLILYGELDHTLARESLQQLRHLPN 233
Score = 25.0 bits (53), Expect(2) = 6e-72
Identities = 10/11 (90%), Positives = 10/11 (90%)
Frame = +1
Query: 1024 HSVVKLRDAGH 1056
HSVVKL DAGH
Sbjct: 234 HSVVKLHDAGH 244
>ref|NP_083907.3| abhydrolase domain-containing protein 14B [Mus musculus].
Length = 210
Score = 122 bits (305), Expect = 6e-28
Identities = 74/164 (45%), Positives = 93/164 (56%), Gaps = 6/164 (3%)
Frame = +2
Query: 551 LFYREVLP-LHRARRVDVVLLHGKAFNSHTWEQLGTLQLLAQRGYRAVALDLPGFGNSAP 727
LF+RE P + R V+LLHG F+S TW+ LGTLQ LA+ GYRAVA+DLPG G S
Sbjct: 18 LFFRETRPGSGQPVRFSVLLLHGIRFSSETWQNLGTLQRLAEAGYRAVAIDLPGLGRS-- 75
Query: 728 SKEASTEAGRAXXXXXXXXXXXXQNA-----VLVSPSLSGRYALPFLMRGHHQLHGFVPI 892
KEA+ A V++SPSLSG Y+LPFL+ QL GFVP+
Sbjct: 76 -KEAAAPAPIGEPAPGSFLAAVVDTLELGPPVVISPSLSGMYSLPFLVAPGSQLRGFVPV 134
Query: 893 APASTQNYTQEQFWAVKTPTLILYGELDRILAQESLQQLRPLPN 1024
AP T + +VKTP LI+YG+ D + S Q L+ LPN
Sbjct: 135 APICTDKINAVDYASVKTPALIVYGDQDP-MGSSSFQHLKQLPN 177
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 38,830,650
Number of extensions: 1192706
Number of successful extensions: 5773
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 5729
Number of HSP's successfully gapped: 7
Length of query: 352
Length of database: 15,617,559
Length adjustment: 102
Effective length of query: 250
Effective length of database: 12,553,887
Effective search space: 3138471750
Effective search space used: 3138471750
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-004142
(1057 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_003358524.1| PREDICTED: abhydrolase domain-containing pro... 357 e-100
Alignment gi|XP_003358508.1| PREDICTED: abhydrolase domain-containing pro... 114 7e-26
Alignment gi|XP_003358507.1| PREDICTED: abhydrolase domain-containing pro... 114 7e-26
>ref|XP_003358524.1| PREDICTED: abhydrolase domain-containing protein 14A-like [Sus
scrofa].
Length = 316
Score = 357 bits (916), Expect(2) = e-100
Identities = 183/215 (85%), Positives = 184/215 (85%)
Frame = +2
Query: 380 TVVQSSMSRSQVAXXXXXXXXXXXXXXXXXXPSEQTSWLWGDPNITILAGLTPGDSPLFY 559
TVVQSSMSRSQVA PSEQTSWLWGDPNITILAGLTPGDSPLFY
Sbjct: 69 TVVQSSMSRSQVALLGLGLLLMLLLYVGLPGPSEQTSWLWGDPNITILAGLTPGDSPLFY 128
Query: 560 REVLPLHRARRVDVVLLHGKAFNSHTWEQLGTLQLLAQRGYRAVALDLPGFGNSAPSKEA 739
REVLPLH+ARRVDVVLLHGKAFNSHTWEQLGTLQLLAQRGYRAVALDLPGFGNSAPSKEA
Sbjct: 129 REVLPLHQARRVDVVLLHGKAFNSHTWEQLGTLQLLAQRGYRAVALDLPGFGNSAPSKEA 188
Query: 740 STEAGRAXXXXXXXXXXXXQNAVLVSPSLSGRYALPFLMRGHHQLHGFVPIAPASTQNYT 919
STEAGRA QNAVLVSPSLSGRYALPFLMRGHHQLHGFVPIAPASTQNYT
Sbjct: 189 STEAGRAELLERVLRNLEVQNAVLVSPSLSGRYALPFLMRGHHQLHGFVPIAPASTQNYT 248
Query: 920 QEQFWAVKTPTLILYGELDRILAQESLQQLRPLPN 1024
QEQFWAVKTPTLILYGELDRILAQESLQQLR LPN
Sbjct: 249 QEQFWAVKTPTLILYGELDRILAQESLQQLRHLPN 283
Score = 26.9 bits (58), Expect(2) = e-100
Identities = 11/11 (100%), Positives = 11/11 (100%)
Frame = +1
Query: 1024 HSVVKLRDAGH 1056
HSVVKLRDAGH
Sbjct: 284 HSVVKLRDAGH 294
Score = 84.7 bits (208), Expect = 8e-17
Identities = 40/40 (100%), Positives = 40/40 (100%)
Frame = +3
Query: 6 ARSSPQSGGGSALVAALFGCWLLLGGARPAVAGRVNPVGP 125
ARSSPQSGGGSALVAALFGCWLLLGGARPAVAGRVNPVGP
Sbjct: 29 ARSSPQSGGGSALVAALFGCWLLLGGARPAVAGRVNPVGP 68
>ref|XP_003358508.1| PREDICTED: abhydrolase domain-containing protein 14B-like isoform 2
[Sus scrofa].
Length = 209
Score = 114 bits (286), Expect = 7e-26
Identities = 70/160 (43%), Positives = 89/160 (55%), Gaps = 2/160 (1%)
Frame = +2
Query: 551 LFYREVLP-LHRARRVDVVLLHGKAFNSHTWEQLGTLQLLAQRGYRAVALDLPGFGNSAP 727
LF+RE P +A R V+LLHG F+S TW+ LGTL LA+ GYRAVA+DLPG G S
Sbjct: 18 LFFREARPGSGQAARFSVLLLHGIRFSSETWQNLGTLHRLAEAGYRAVAIDLPGLGRSKE 77
Query: 728 SKEAST-EAGRAXXXXXXXXXXXXQNAVLVSPSLSGRYALPFLMRGHHQLHGFVPIAPAS 904
+ A E + V+VSPSLSG Y+L FL QL G+VP+AP
Sbjct: 78 ATPAPIGELVPSSFLAAVVDALDLGPPVVVSPSLSGMYSLLFLTAPDSQLRGYVPVAPIC 137
Query: 905 TQNYTQEQFWAVKTPTLILYGELDRILAQESLQQLRPLPN 1024
T + VKT LI+YG+ D + Q S + L+ LPN
Sbjct: 138 TDKINAADYARVKTSVLIVYGDQDP-MGQTSFEHLKQLPN 176
>ref|XP_003358507.1| PREDICTED: abhydrolase domain-containing protein 14B-like isoform 1
[Sus scrofa].
Length = 209
Score = 114 bits (286), Expect = 7e-26
Identities = 70/160 (43%), Positives = 89/160 (55%), Gaps = 2/160 (1%)
Frame = +2
Query: 551 LFYREVLP-LHRARRVDVVLLHGKAFNSHTWEQLGTLQLLAQRGYRAVALDLPGFGNSAP 727
LF+RE P +A R V+LLHG F+S TW+ LGTL LA+ GYRAVA+DLPG G S
Sbjct: 18 LFFREARPGSGQAARFSVLLLHGIRFSSETWQNLGTLHRLAEAGYRAVAIDLPGLGRSKE 77
Query: 728 SKEAST-EAGRAXXXXXXXXXXXXQNAVLVSPSLSGRYALPFLMRGHHQLHGFVPIAPAS 904
+ A E + V+VSPSLSG Y+L FL QL G+VP+AP
Sbjct: 78 ATPAPIGELVPSSFLAAVVDALDLGPPVVVSPSLSGMYSLLFLTAPDSQLRGYVPVAPIC 137
Query: 905 TQNYTQEQFWAVKTPTLILYGELDRILAQESLQQLRPLPN 1024
T + VKT LI+YG+ D + Q S + L+ LPN
Sbjct: 138 TDKINAADYARVKTSVLIVYGDQDP-MGQTSFEHLKQLPN 176
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 29,375,381
Number of extensions: 940810
Number of successful extensions: 4918
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 4862
Number of HSP's successfully gapped: 5
Length of query: 352
Length of database: 11,343,932
Length adjustment: 100
Effective length of query: 252
Effective length of database: 8,854,232
Effective search space: 2231266464
Effective search space used: 2231266464
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-004142
(1057 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr13 505 e-140
>Sscrofa_Chr13
|| Length = 218635234
Score = 505 bits (255), Expect = e-140
Identities = 255/255 (100%)
Strand = Plus / Plus
Query: 125 gcaaggtgccctgtgtcccaggcccatcaaaggagaggtgcaacaagaatactttgcctg 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 37303300 gcaaggtgccctgtgtcccaggcccatcaaaggagaggtgcaacaagaatactttgcctg 37303359
Query: 185 ataggaacctagggtgctgcgttggaggtgtgcaacggaggctggttgtgggtcagaagg 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 37303360 ataggaacctagggtgctgcgttggaggtgtgcaacggaggctggttgtgggtcagaagg 37303419
Query: 245 aaaagaggacccagctcttcctccattcagctctggttctccatcagccccagaggggct 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 37303420 aaaagaggacccagctcttcctccattcagctctggttctccatcagccccagaggggct 37303479
Query: 305 gccactgcccagtcaccacctgaccctggaagggggatcggcgtgggagacatccccaaa 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 37303480 gccactgcccagtcaccacctgaccctggaagggggatcggcgtgggagacatccccaaa 37303539
Query: 365 gcttctggaaacaag 379
|||||||||||||||
Sbjct: 37303540 gcttctggaaacaag 37303554
Score = 480 bits (242), Expect = e-133
Identities = 242/242 (100%)
Strand = Plus / Plus
Query: 702 tcccaggttttgggaattcggcaccttcaaaggaggcaagcacagaggcggggcgggcag 761
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 37306994 tcccaggttttgggaattcggcaccttcaaaggaggcaagcacagaggcggggcgggcag 37307053
Query: 762 agctgctggagcgagtgttacggaacctggaggtgcagaatgccgtgctggtgagccctt 821
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 37307054 agctgctggagcgagtgttacggaacctggaggtgcagaatgccgtgctggtgagccctt 37307113
Query: 822 ccctgagtggccgctatgctctgcccttcctgatgcgaggccaccaccagctgcatggat 881
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 37307114 ccctgagtggccgctatgctctgcccttcctgatgcgaggccaccaccagctgcatggat 37307173
Query: 882 tcgtgcccattgcacctgcttccacccagaattacacccaggaacagttctgggctgtga 941
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 37307174 tcgtgcccattgcacctgcttccacccagaattacacccaggaacagttctgggctgtga 37307233
Query: 942 ag 943
||
Sbjct: 37307234 ag 37307235
Score = 418 bits (211), Expect = e-114
Identities = 214/215 (99%)
Strand = Plus / Plus
Query: 378 agactgtggtacagtcctcaatgagccggtcccaggtagccctgctgggcctgggcctgc 437
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 37304944 agactgtggtacagtcctcaatgagccggtcccaggtagccctgctgggcctgggcctgc 37305003
Query: 438 tgcttatgctgctactgtatgtggggcttccaggaccatctgagcagacctcctggctct 497
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 37305004 tgcttatgctgctactgtatgtggggcttccaggaccatctgagcagacctcctggctct 37305063
Query: 498 ggggagatcccaatatcacgatcctggctggtctcacccctggcgactcccccctttttt 557
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 37305064 ggggagatcccaatatcacgatcctggctggtctcacccctggcgactcccccctttttt 37305123
Query: 558 accgcgaggtgctccccctccaccgggcccgcagg 592
|||||||||||||||||||||||| ||||||||||
Sbjct: 37305124 accgcgaggtgctccccctccaccaggcccgcagg 37305158
Score = 248 bits (125), Expect = 5e-63
Identities = 125/125 (100%)
Strand = Plus / Plus
Query: 1 ctagagcccgaagcagcccgcagagcggcggaggcagcgcgttggtcgcggctctctttg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 37302383 ctagagcccgaagcagcccgcagagcggcggaggcagcgcgttggtcgcggctctctttg 37302442
Query: 61 gctgctggttgctcctgggcggagcccgccccgcggtggctggccgggtcaacccggtcg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 37302443 gctgctggttgctcctgggcggagcccgccccgcggtggctggccgggtcaacccggtcg 37302502
Query: 121 gcccg 125
|||||
Sbjct: 37302503 gcccg 37302507
Score = 240 bits (121), Expect = 1e-60
Identities = 121/121 (100%)
Strand = Plus / Plus
Query: 589 cagggtggatgtggtgctgctccatggaaaggcctttaactcccacacgtgggagcagct 648
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 37305331 cagggtggatgtggtgctgctccatggaaaggcctttaactcccacacgtgggagcagct 37305390
Query: 649 gggcacgctgcaactgctggcgcagaggggctaccgggccgtggcccttgacctcccagg 708
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 37305391 gggcacgctgcaactgctggcgcagaggggctaccgggccgtggcccttgacctcccagg 37305450
Query: 709 t 709
|
Sbjct: 37305451 t 37305451
Score = 200 bits (101), Expect = 1e-48
Identities = 114/117 (97%), Gaps = 1/117 (0%)
Strand = Plus / Plus
Query: 942 agaccccgactctcatcttgtatggggagctggaccgcatcctggctcaggagtcactgc 1001
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 37307444 agaccccgactctcatcttgtatggggagctggaccgcatcctggctcaggagtcactgc 37307503
Query: 1002 agcagctccgcccactgcctaa-cactctgtggtgaagctgcgcgacgcaggccatg 1057
|||||||||||| |||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 37307504 agcagctccgccacctgcctaaccactctgtggtgaagctgcgcgacgcaggccatg 37307560
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 27,919,317
Number of extensions: 239
Number of successful extensions: 239
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 238
Number of HSP's successfully gapped: 6
Length of query: 1057
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1036
Effective length of database: 2,808,413,156
Effective search space: 2909516029616
Effective search space used: 2909516029616
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)