Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-004144
(1002 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001069871.1| RAD51-associated protein 1 [Bos taurus]. 225 5e-59
Alignment gi|XP_002687932.1| PREDICTED: RAD51 associated protein 1-like [... 225 5e-59
>ref|NP_001069871.1| RAD51-associated protein 1 [Bos taurus].
Length = 326
Score = 225 bits (573), Expect = 5e-59
Identities = 140/282 (49%), Positives = 156/282 (55%)
Frame = +3
Query: 156 MVRPARHKKPVNYSQFENSDSDDDFVPATAPLSKKSRTTXXXXXXXXXXXXXXXXXXXDI 335
MVRPARHKKPVNYSQFE+SDSDDDFVPATAPL+KKSRTT DI
Sbjct: 1 MVRPARHKKPVNYSQFEDSDSDDDFVPATAPLNKKSRTTQKELKLEKPEPKLKNLQEKDI 60
Query: 336 PLQEKTPKKRMALDDKLYQRDLEVALALSVKELPTVTIDAEDCQDKSTDEHGSGNAETTV 515
LQEKTPKKRMALDDKLY+RDLEVALALSVKE+P VTID E Q + D+HG T
Sbjct: 61 SLQEKTPKKRMALDDKLYKRDLEVALALSVKEVPAVTIDVE--QSQGFDKHGKKETGATS 118
Query: 516 KSPHISNCSVASDYLDLDKITEEGDXXXXXXXXXXXXXXTVQQRKILLXXXXXXXXXXXX 695
KSPH+SNCSVA DYLDLDKITEE + VQQRKILL
Sbjct: 119 KSPHVSNCSVAGDYLDLDKITEEDESQDTPRRRKAASQAVVQQRKILL--ENGYDDGAND 176
Query: 696 XEPDFATGXXXXXXXXXXXXXXXXALTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAA 875
EPDFATG + T A
Sbjct: 177 SEPDFATGEDSEDDSDFSGSEDDESFTVRRSKVKETKRKEMKAKPPAEKKEKPKPKPGAR 236
Query: 876 VVTSVHSAPSAVQSESQPLPKKVSVSSEATEKPLQICSPSAE 1001
VTSV +P+AV+SES+ P+K EA+ P QICSP+AE
Sbjct: 237 -VTSVDCSPAAVKSESRSSPRK-----EASRTPSQICSPAAE 272
>ref|XP_002687932.1| PREDICTED: RAD51 associated protein 1-like [Bos taurus].
Length = 326
Score = 225 bits (573), Expect = 5e-59
Identities = 140/282 (49%), Positives = 156/282 (55%)
Frame = +3
Query: 156 MVRPARHKKPVNYSQFENSDSDDDFVPATAPLSKKSRTTXXXXXXXXXXXXXXXXXXXDI 335
MVRPARHKKPVNYSQFE+SDSDDDFVPATAPL+KKSRTT DI
Sbjct: 1 MVRPARHKKPVNYSQFEDSDSDDDFVPATAPLNKKSRTTQKELKLEKPEPKLKNLQEKDI 60
Query: 336 PLQEKTPKKRMALDDKLYQRDLEVALALSVKELPTVTIDAEDCQDKSTDEHGSGNAETTV 515
LQEKTPKKRMALDDKLY+RDLEVALALSVKE+P VTID E Q + D+HG T
Sbjct: 61 SLQEKTPKKRMALDDKLYKRDLEVALALSVKEVPAVTIDVE--QSQGFDKHGKKETGATS 118
Query: 516 KSPHISNCSVASDYLDLDKITEEGDXXXXXXXXXXXXXXTVQQRKILLXXXXXXXXXXXX 695
KSPH+SNCSVA DYLDLDKITEE + VQQRKILL
Sbjct: 119 KSPHVSNCSVAGDYLDLDKITEEDESQDTPRRRKAASQAVVQQRKILL--ENGYDDGAND 176
Query: 696 XEPDFATGXXXXXXXXXXXXXXXXALTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAA 875
EPDFATG + T A
Sbjct: 177 SEPDFATGEDSEDDSDFSGSEDDESFTVRRSKVKETKRKEMKAKPPAEKKEKPKPKPGAR 236
Query: 876 VVTSVHSAPSAVQSESQPLPKKVSVSSEATEKPLQICSPSAE 1001
VTSV +P+AV+SES+ P+K EA+ P QICSP+AE
Sbjct: 237 -VTSVDCSPAAVKSESRSSPRK-----EASRTPSQICSPAAE 272
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 30,041,396
Number of extensions: 686849
Number of successful extensions: 2289
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 2278
Number of HSP's successfully gapped: 2
Length of query: 334
Length of database: 17,681,374
Length adjustment: 103
Effective length of query: 231
Effective length of database: 14,273,310
Effective search space: 3297134610
Effective search space used: 3297134610
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-004144
(1002 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_854574.1| PREDICTED: similar to RAD51 associated protein ... 241 1e-63
>ref|XP_854574.1| PREDICTED: similar to RAD51 associated protein 1 [Canis familiaris].
Length = 358
Score = 241 bits (614), Expect = 1e-63
Identities = 152/289 (52%), Positives = 162/289 (56%), Gaps = 2/289 (0%)
Frame = +3
Query: 141 TLEETMVRPAR-HKKPVNYSQFENSDSDDDFVPATAPLSKKSRTTXXXXXXXXXXXXXXX 317
T+ ET RP + HKKPVNYSQFENSDSDDDFV ATAPL+KK RTT
Sbjct: 17 TVGETGRRPLKLHKKPVNYSQFENSDSDDDFVSATAPLNKKPRTTPKELKLETRKPKLKN 76
Query: 318 XXXXDIPLQEKTPKKRMALDDKLYQRDLEVALALSVKELPTVTIDAEDCQDKSTDEHGSG 497
DIP QEKTPKKRMALDDKLYQRDLEVALALSVKELPTVTID E+ QDKST + GS
Sbjct: 77 LQKEDIPAQEKTPKKRMALDDKLYQRDLEVALALSVKELPTVTIDVEEAQDKSTGKCGSS 136
Query: 498 NAETTVKSPHISNCSVASDYLDLDKITEEGDXXXXXXXXXXXXXXTVQQRKILLXXXXXX 677
T K+PHISNCSVASDYLDLDKITEE D VQQRKILL
Sbjct: 137 ETGTMNKAPHISNCSVASDYLDLDKITEEDDFHGVEGKRKAASKAVVQQRKILL--EGSD 194
Query: 678 XXXXXXXEPDFATGXXXXXXXXXXXXXXXXA-LTXXXXXXXXXXXXXXXXXXXXXXXXXX 854
EPDFATG T
Sbjct: 195 GDSANDSEPDFATGEESEDDSDFSESEGDDEDFTMGRNKVKEMKKKEVKVKSPAEKKEKK 254
Query: 855 XXXXXAAVVTSVHSAPSAVQSESQPLPKKVSVSSEATEKPLQICSPSAE 1001
VTS S P+A++SESQP PKKVS+SSE T KP QI SPSAE
Sbjct: 255 PKSKCDTWVTSGDSLPAAMKSESQPSPKKVSLSSEVTRKPPQIRSPSAE 303
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 31,377,972
Number of extensions: 707109
Number of successful extensions: 2274
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 2267
Number of HSP's successfully gapped: 2
Length of query: 334
Length of database: 18,874,504
Length adjustment: 103
Effective length of query: 231
Effective length of database: 15,440,896
Effective search space: 3566846976
Effective search space used: 3566846976
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-004144
(1002 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_006470.1| RAD51-associated protein 1 isoform b [Homo sapi... 243 2e-64
Alignment gi|NP_001124334.1| RAD51-associated protein 1 isoform a [Homo s... 232 4e-61
>ref|NP_006470.1| RAD51-associated protein 1 isoform b [Homo sapiens].
Length = 335
Score = 243 bits (620), Expect = 2e-64
Identities = 146/283 (51%), Positives = 163/283 (57%), Gaps = 1/283 (0%)
Frame = +3
Query: 156 MVRPARHKKPVNYSQFENSDSDDDFVPATAPLSKKSRTTXXXXXXXXXXXXXXXXXXXDI 335
MVRP RHKKPVNYSQF++SDSDDDFV AT PL+KKSRT +I
Sbjct: 1 MVRPVRHKKPVNYSQFDHSDSDDDFVSATVPLNKKSRTAPKELKQDKPKPNLNNLRKEEI 60
Query: 336 PLQEKTPKKRMALDDKLYQRDLEVALALSVKELPTVTIDAEDCQDKSTDEHGSGNAETTV 515
P+QEKTPKKRMALDDKLYQRDLEVALALSVKELPTVT + ++ QDKS ++HGS ET
Sbjct: 61 PVQEKTPKKRMALDDKLYQRDLEVALALSVKELPTVTTNVQNSQDKSIEKHGSSKIETMN 120
Query: 516 KSPHISNCSVASDYLDLDKITEEGDXXXXXXXXXXXXXXTVQQRKILLXXXXXXXXXXXX 695
KSPHISNCSVASDYLDLDKIT E D QQRKILL
Sbjct: 121 KSPHISNCSVASDYLDLDKITVEDDVGGVQGKRKAASKAAAQQRKILL--EGSDGDSAND 178
Query: 696 XEPDFATGXXXXXXXXXXXXXXXXA-LTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXA 872
EPDFA G +
Sbjct: 179 TEPDFAPGEDSEDDSDFCESEDNDEDFSMRKSKVKEIKKKEVKVKSPVEKKEKKSKSKCN 238
Query: 873 AVVTSVHSAPSAVQSESQPLPKKVSVSSEATEKPLQICSPSAE 1001
A+VTSV SAP+AV+SESQ LPKKVS+SS+ T KPL+I SPSAE
Sbjct: 239 ALVTSVDSAPAAVKSESQSLPKKVSLSSDTTRKPLEIRSPSAE 281
>ref|NP_001124334.1| RAD51-associated protein 1 isoform a [Homo sapiens].
Length = 352
Score = 232 bits (592), Expect = 4e-61
Identities = 146/300 (48%), Positives = 163/300 (54%), Gaps = 18/300 (6%)
Frame = +3
Query: 156 MVRPARHKKPVNYSQFENSDSDDDFVPATAPLSKKSRTTXXXXXXXXXXXXXXXXXXXDI 335
MVRP RHKKPVNYSQF++SDSDDDFV AT PL+KKSRT +I
Sbjct: 1 MVRPVRHKKPVNYSQFDHSDSDDDFVSATVPLNKKSRTAPKELKQDKPKPNLNNLRKEEI 60
Query: 336 PLQEKTPKKR-----------------MALDDKLYQRDLEVALALSVKELPTVTIDAEDC 464
P+QEKTPKKR MALDDKLYQRDLEVALALSVKELPTVT + ++
Sbjct: 61 PVQEKTPKKRLPEGTFSIPASAVPCTKMALDDKLYQRDLEVALALSVKELPTVTTNVQNS 120
Query: 465 QDKSTDEHGSGNAETTVKSPHISNCSVASDYLDLDKITEEGDXXXXXXXXXXXXXXTVQQ 644
QDKS ++HGS ET KSPHISNCSVASDYLDLDKIT E D QQ
Sbjct: 121 QDKSIEKHGSSKIETMNKSPHISNCSVASDYLDLDKITVEDDVGGVQGKRKAASKAAAQQ 180
Query: 645 RKILLXXXXXXXXXXXXXEPDFATGXXXXXXXXXXXXXXXXA-LTXXXXXXXXXXXXXXX 821
RKILL EPDFA G +
Sbjct: 181 RKILL--EGSDGDSANDTEPDFAPGEDSEDDSDFCESEDNDEDFSMRKSKVKEIKKKEVK 238
Query: 822 XXXXXXXXXXXXXXXXAAVVTSVHSAPSAVQSESQPLPKKVSVSSEATEKPLQICSPSAE 1001
A+VTSV SAP+AV+SESQ LPKKVS+SS+ T KPL+I SPSAE
Sbjct: 239 VKSPVEKKEKKSKSKCNALVTSVDSAPAAVKSESQSLPKKVSLSSDTTRKPLEIRSPSAE 298
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 30,853,274
Number of extensions: 696635
Number of successful extensions: 2303
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 2289
Number of HSP's successfully gapped: 4
Length of query: 334
Length of database: 18,297,164
Length adjustment: 103
Effective length of query: 231
Effective length of database: 14,901,872
Effective search space: 3442332432
Effective search space used: 3442332432
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-004144
(1002 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_033039.2| RAD51-associated protein 1 [Mus musculus]. 142 5e-34
>ref|NP_033039.2| RAD51-associated protein 1 [Mus musculus].
Length = 337
Score = 142 bits (357), Expect = 5e-34
Identities = 79/148 (53%), Positives = 102/148 (68%), Gaps = 3/148 (2%)
Frame = +3
Query: 156 MVRPARHKKPVNYSQFENS--DSDDDFVPATAPLSKKSRTTXXXXXXXXXXXXXXXXXXX 329
MVRP R++KP+NYSQFE+S DSDDDF+ ++ P++K S+T
Sbjct: 1 MVRPIRNRKPINYSQFEDSGNDSDDDFISSSTPVNK-SKTVPKVLKQDKPKPNLKNLQKE 59
Query: 330 DIPLQEKTPKKRMALDDKLYQRDLEVALALSVKELPTVTIDAEDCQDKSTDEHGSGNAET 509
++ L + PKKR+ALDDK++QR LEVALALSVKELPT+T + ++KSTD+ G E
Sbjct: 60 EV-LPTEPPKKRVALDDKVFQRGLEVALALSVKELPTLTNQVKKSKEKSTDKQGKEKTEN 118
Query: 510 TVKSPHISNCSVASDYL-DLDKITEEGD 590
T K PH+SNCSVASD + DLDKITEEGD
Sbjct: 119 TGKPPHVSNCSVASDDVEDLDKITEEGD 146
Score = 49.3 bits (116), Expect = 5e-06
Identities = 25/43 (58%), Positives = 31/43 (72%)
Frame = +3
Query: 873 AVVTSVHSAPSAVQSESQPLPKKVSVSSEATEKPLQICSPSAE 1001
A VTSV AP+A++S S LP+ V + SEAT KP +CSPSAE
Sbjct: 238 ASVTSVDPAPAAIKSGSPSLPQAVGLPSEATRKPAIMCSPSAE 280
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 26,245,496
Number of extensions: 594215
Number of successful extensions: 1970
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 1961
Number of HSP's successfully gapped: 2
Length of query: 334
Length of database: 15,617,559
Length adjustment: 102
Effective length of query: 232
Effective length of database: 12,553,887
Effective search space: 2912501784
Effective search space used: 2912501784
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-004144
(1002 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_001926415.2| PREDICTED: RAD51-associated protein 1 isofor... 335 2e-92
Alignment gi|XP_003126606.1| PREDICTED: RAD51-associated protein 1 isofor... 322 2e-88
>ref|XP_001926415.2| PREDICTED: RAD51-associated protein 1 isoform 1 [Sus scrofa].
Length = 337
Score = 335 bits (859), Expect = 2e-92
Identities = 188/282 (66%), Positives = 189/282 (67%)
Frame = +3
Query: 156 MVRPARHKKPVNYSQFENSDSDDDFVPATAPLSKKSRTTXXXXXXXXXXXXXXXXXXXDI 335
MVRPARHKKPVNYSQFENSDSDDDFVPATAPLSKKSRTT DI
Sbjct: 1 MVRPARHKKPVNYSQFENSDSDDDFVPATAPLSKKSRTTQKELKLEKPEPKLKNLQEKDI 60
Query: 336 PLQEKTPKKRMALDDKLYQRDLEVALALSVKELPTVTIDAEDCQDKSTDEHGSGNAETTV 515
PLQEKTPKKRMALDDKLYQRDLEVALALSVKELPTVTIDAEDCQDKSTDEHGSGNAETTV
Sbjct: 61 PLQEKTPKKRMALDDKLYQRDLEVALALSVKELPTVTIDAEDCQDKSTDEHGSGNAETTV 120
Query: 516 KSPHISNCSVASDYLDLDKITEEGDXXXXXXXXXXXXXXTVQQRKILLXXXXXXXXXXXX 695
KSPHISNCSVASDYLDLDKITEEGD TVQQRKILL
Sbjct: 121 KSPHISNCSVASDYLDLDKITEEGDSRGARGRRKAASQATVQQRKILLDGRDGNGDGDSD 180
Query: 696 XEPDFATGXXXXXXXXXXXXXXXXALTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAA 875
EPDFATG ALT AA
Sbjct: 181 SEPDFATGDDSEDDSDFCESEDDEALTVRKSKVKEIKKQKVKVKSPVEKKEKKPKSRRAA 240
Query: 876 VVTSVHSAPSAVQSESQPLPKKVSVSSEATEKPLQICSPSAE 1001
VVTSVHSAPSAV+SESQPLPKKVSVSSEATEKPLQICSPSAE
Sbjct: 241 VVTSVHSAPSAVKSESQPLPKKVSVSSEATEKPLQICSPSAE 282
>ref|XP_003126606.1| PREDICTED: RAD51-associated protein 1 isoform 2 [Sus scrofa].
Length = 360
Score = 322 bits (825), Expect = 2e-88
Identities = 188/305 (61%), Positives = 189/305 (61%), Gaps = 23/305 (7%)
Frame = +3
Query: 156 MVRPARHKKPVNYSQFENSDSDDDFVPATAPLSKKSRTTXXXXXXXXXXXXXXXXXXXDI 335
MVRPARHKKPVNYSQFENSDSDDDFVPATAPLSKKSRTT DI
Sbjct: 1 MVRPARHKKPVNYSQFENSDSDDDFVPATAPLSKKSRTTQKELKLEKPEPKLKNLQEKDI 60
Query: 336 PLQEKTPKKR-----------------------MALDDKLYQRDLEVALALSVKELPTVT 446
PLQEKTPKKR MALDDKLYQRDLEVALALSVKELPTVT
Sbjct: 61 PLQEKTPKKRLFEGTFNILSSAVPPTDYLLKYLMALDDKLYQRDLEVALALSVKELPTVT 120
Query: 447 IDAEDCQDKSTDEHGSGNAETTVKSPHISNCSVASDYLDLDKITEEGDXXXXXXXXXXXX 626
IDAEDCQDKSTDEHGSGNAETTVKSPHISNCSVASDYLDLDKITEEGD
Sbjct: 121 IDAEDCQDKSTDEHGSGNAETTVKSPHISNCSVASDYLDLDKITEEGDSRGARGRRKAAS 180
Query: 627 XXTVQQRKILLXXXXXXXXXXXXXEPDFATGXXXXXXXXXXXXXXXXALTXXXXXXXXXX 806
TVQQRKILL EPDFATG ALT
Sbjct: 181 QATVQQRKILLDGRDGNGDGDSDSEPDFATGDDSEDDSDFCESEDDEALTVRKSKVKEIK 240
Query: 807 XXXXXXXXXXXXXXXXXXXXXAAVVTSVHSAPSAVQSESQPLPKKVSVSSEATEKPLQIC 986
AAVVTSVHSAPSAV+SESQPLPKKVSVSSEATEKPLQIC
Sbjct: 241 KQKVKVKSPVEKKEKKPKSRRAAVVTSVHSAPSAVKSESQPLPKKVSVSSEATEKPLQIC 300
Query: 987 SPSAE 1001
SPSAE
Sbjct: 301 SPSAE 305
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 19,311,803
Number of extensions: 438785
Number of successful extensions: 1514
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 1503
Number of HSP's successfully gapped: 2
Length of query: 334
Length of database: 11,343,932
Length adjustment: 99
Effective length of query: 235
Effective length of database: 8,879,129
Effective search space: 2086595315
Effective search space used: 2086595315
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-004144
(1002 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr05 343 1e-91
>Sscrofa_Chr05
|| Length = 111506441
Score = 343 bits (173), Expect = 1e-91
Identities = 173/173 (100%)
Strand = Plus / Minus
Query: 1 gagcgcatgcgcggcaaccgggatggccggtgaggattggagggctgacggccgggcgga 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 68103110 gagcgcatgcgcggcaaccgggatggccggtgaggattggagggctgacggccgggcgga 68103051
Query: 61 gcgctgtggatttggttttaggcgggaattggaactgcagcggcagatgccagcaggagt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 68103050 gcgctgtggatttggttttaggcgggaattggaactgcagcggcagatgccagcaggagt 68102991
Query: 121 ctaagaagtgcatatttcctaccttggaggagaccatggtgcggcctgcgagg 173
|||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 68102990 ctaagaagtgcatatttcctaccttggaggagaccatggtgcggcctgcgagg 68102938
Score = 321 bits (162), Expect = 4e-85
Identities = 162/162 (100%)
Strand = Plus / Minus
Query: 560 agatctggataagatcaccgaggaaggtgattctcgaggtgctcgagggaggagaaaggc 619
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 68091444 agatctggataagatcaccgaggaaggtgattctcgaggtgctcgagggaggagaaaggc 68091385
Query: 620 agcatcccaagccacggtccagcagaggaagatcctcctggacggccgtgacggcaacgg 679
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 68091384 agcatcccaagccacggtccagcagaggaagatcctcctggacggccgtgacggcaacgg 68091325
Query: 680 tgacggcgacagtgactccgaaccagactttgcaacaggtga 721
||||||||||||||||||||||||||||||||||||||||||
Sbjct: 68091324 tgacggcgacagtgactccgaaccagactttgcaacaggtga 68091283
Score = 268 bits (135), Expect = 5e-69
Identities = 135/135 (100%)
Strand = Plus / Minus
Query: 222 gatgattttgttcctgcaaccgcaccgttaagtaagaaatccagaacaacacaaaaggag 281
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 68097145 gatgattttgttcctgcaaccgcaccgttaagtaagaaatccagaacaacacaaaaggag 68097086
Query: 282 ttaaaactagaaaaaccagaaccaaaactgaagaacctccaggaaaaagacatcccacta 341
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 68097085 ttaaaactagaaaaaccagaaccaaaactgaagaacctccaggaaaaagacatcccacta 68097026
Query: 342 caagagaaaacccct 356
|||||||||||||||
Sbjct: 68097025 caagagaaaacccct 68097011
Score = 238 bits (120), Expect = 5e-60
Identities = 123/124 (99%)
Strand = Plus / Minus
Query: 879 gtgacttcagtacactctgctccatctgccgtccagtcagaatctcagcccttgccaaaa 938
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 68083721 gtgacttcagtacactctgctccatctgccgtcaagtcagaatctcagcccttgccaaaa 68083662
Query: 939 aaggtttctgtttcttcagaggccactgagaagccattacaaatatgcagtccttcggct 998
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 68083661 aaggtttctgtttcttcagaggccactgagaagccattacaaatatgcagtccttcggct 68083602
Query: 999 gaaa 1002
||||
Sbjct: 68083601 gaaa 68083598
Score = 222 bits (112), Expect = 3e-55
Identities = 112/112 (100%)
Strand = Plus / Minus
Query: 364 ggatggctttagatgacaagctataccagagagacttagaagtcgcactggctttatcag 423
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 68093842 ggatggctttagatgacaagctataccagagagacttagaagtcgcactggctttatcag 68093783
Query: 424 tgaaggaacttccaactgtcaccattgatgcggaggactgtcaagataaaag 475
||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 68093782 tgaaggaacttccaactgtcaccattgatgcggaggactgtcaagataaaag 68093731
Score = 172 bits (87), Expect = 2e-40
Identities = 87/87 (100%)
Strand = Plus / Minus
Query: 475 gcactgatgaacatggcagtggaaacgcagaaacgacagttaagtctcctcatatctcca 534
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 68092025 gcactgatgaacatggcagtggaaacgcagaaacgacagttaagtctcctcatatctcca 68091966
Query: 535 actgcagcgtagccagtgattatttag 561
|||||||||||||||||||||||||||
Sbjct: 68091965 actgcagcgtagccagtgattatttag 68091939
Score = 131 bits (66), Expect = 8e-28
Identities = 66/66 (100%)
Strand = Plus / Minus
Query: 715 caggtgacgattctgaggatgattctgatttttgtgagagtgaggatgatgaagccctca 774
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 68087375 caggtgacgattctgaggatgattctgatttttgtgagagtgaggatgatgaagccctca 68087316
Query: 775 ctgtga 780
||||||
Sbjct: 68087315 ctgtga 68087310
Score = 103 bits (52), Expect = 2e-19
Identities = 52/52 (100%)
Strand = Plus / Minus
Query: 171 aggcataagaagccagtcaattactcccagtttgagaactctgacagtgatg 222
||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 68098843 aggcataagaagccagtcaattactcccagtttgagaactctgacagtgatg 68098792
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 27,055,770
Number of extensions: 253
Number of successful extensions: 253
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 253
Number of HSP's successfully gapped: 8
Length of query: 1002
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 981
Effective length of database: 2,808,413,156
Effective search space: 2755053306036
Effective search space used: 2755053306036
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 29 (58.0 bits)