Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-004145
(1225 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001014854.1| WD repeat-containing protein 74 [Bos taurus]. 568 e-162
>ref|NP_001014854.1| WD repeat-containing protein 74 [Bos taurus].
Length = 385
Score = 568 bits (1465), Expect = e-162
Identities = 277/314 (88%), Positives = 288/314 (91%)
Frame = +1
Query: 40 MAAAEARWNHVWVGTDTGILKGVNLQRKQAVNYTAAGQPQREEAVSALCWGAGGETQILV 219
MAAA ARWNHVWVGTDTGILKGVNLQRKQA N+TA+GQP+REEAVSALCWGAGGETQILV
Sbjct: 1 MAAAAARWNHVWVGTDTGILKGVNLQRKQAANFTASGQPRREEAVSALCWGAGGETQILV 60
Query: 220 GCADRTVKLFSTEEGRFQGQRHCPGGEGTFRGLAQVDGTLITCVESGILRVWHDNDKEAS 399
GCAD TVK FSTEEGRFQGQR CPGGEGTFRGLAQVDGTLITCV+SGILRVW D DKEAS
Sbjct: 61 GCADGTVKHFSTEEGRFQGQRQCPGGEGTFRGLAQVDGTLITCVDSGILRVWTDKDKEAS 120
Query: 400 SDPLLELRVGPGVCRMRQDPSRPHVVATGGKENALKVWDLQGSEEPVFKAKNVRNDWLDL 579
SDP+LELRVGPGVCRMRQDP+RPH+VATGGKENALKVWDLQGSEEP+F+AKNVRNDWLDL
Sbjct: 121 SDPVLELRVGPGVCRMRQDPARPHIVATGGKENALKVWDLQGSEEPLFRAKNVRNDWLDL 180
Query: 580 RVPIWDQDIQFLPESQKLVTCTGYHQVRVYDPASPQRRPVLEATYGEYPLTAMTLTPEGN 759
RVP+WDQDIQFLPESQKLVTCTGYHQVRVYDPASPQRRPVLEATYGEYPLTA+TLTPEGN
Sbjct: 181 RVPVWDQDIQFLPESQKLVTCTGYHQVRVYDPASPQRRPVLEATYGEYPLTAVTLTPEGN 240
Query: 760 SVIVGNTHGQLAEIDLRQGRLLGCLKGLAGSVRGLQCHPSSPS*PPVAWTES*GYTRIRI 939
SVIVGNTHGQLAEIDLRQGRLLGCLKGLAGSVRGLQCHPS P RIR
Sbjct: 241 SVIVGNTHGQLAEIDLRQGRLLGCLKGLAGSVRGLQCHPSKPLLASCGLDRVLRIHRIRN 300
Query: 940 PRGREHKG*LKSQL 981
PRG EHK LKSQL
Sbjct: 301 PRGLEHKVYLKSQL 314
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 52,803,549
Number of extensions: 1679997
Number of successful extensions: 7165
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 7125
Number of HSP's successfully gapped: 1
Length of query: 408
Length of database: 17,681,374
Length adjustment: 105
Effective length of query: 303
Effective length of database: 14,207,134
Effective search space: 4304761602
Effective search space used: 4304761602
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-004145
(1225 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_540899.2| PREDICTED: similar to NOP seven associated prot... 560 e-159
>ref|XP_540899.2| PREDICTED: similar to NOP seven associated protein 1 [Canis
familiaris].
Length = 383
Score = 560 bits (1442), Expect = e-159
Identities = 272/313 (86%), Positives = 284/313 (90%)
Frame = +1
Query: 43 AAAEARWNHVWVGTDTGILKGVNLQRKQAVNYTAAGQPQREEAVSALCWGAGGETQILVG 222
AAA ARWNHVWVGT+TGILKGVNLQRKQA N+TAAGQP+REEAVSALCWGAGGETQILVG
Sbjct: 3 AAAGARWNHVWVGTETGILKGVNLQRKQAANFTAAGQPRREEAVSALCWGAGGETQILVG 62
Query: 223 CADRTVKLFSTEEGRFQGQRHCPGGEGTFRGLAQVDGTLITCVESGILRVWHDNDKEASS 402
CADRTV+ FSTEEGRFQGQ+HCPGGEGTFRGLAQVD TLITCV+SGI+RVW +NDKEASS
Sbjct: 63 CADRTVRFFSTEEGRFQGQKHCPGGEGTFRGLAQVDSTLITCVDSGIVRVWRENDKEASS 122
Query: 403 DPLLELRVGPGVCRMRQDPSRPHVVATGGKENALKVWDLQGSEEPVFKAKNVRNDWLDLR 582
DPLLEL VGPGVCRMRQDP+ PH+VATGGKENALKVWDLQGSEEPVF+AKNVRNDWLDLR
Sbjct: 123 DPLLELSVGPGVCRMRQDPAHPHMVATGGKENALKVWDLQGSEEPVFRAKNVRNDWLDLR 182
Query: 583 VPIWDQDIQFLPESQKLVTCTGYHQVRVYDPASPQRRPVLEATYGEYPLTAMTLTPEGNS 762
VPIWDQDIQFLPESQKLVTCTGYHQVRVYDPASPQRRPVLE TYGEYPL AMTLTP GNS
Sbjct: 183 VPIWDQDIQFLPESQKLVTCTGYHQVRVYDPASPQRRPVLEVTYGEYPLMAMTLTPGGNS 242
Query: 763 VIVGNTHGQLAEIDLRQGRLLGCLKGLAGSVRGLQCHPSSPS*PPVAWTES*GYTRIRIP 942
VIVGNTHGQLAEIDLRQGRLLGCLKGLAGSVRGLQCHPS P RI+ P
Sbjct: 243 VIVGNTHGQLAEIDLRQGRLLGCLKGLAGSVRGLQCHPSKPLLASCGLDRVLRIHRIQNP 302
Query: 943 RGREHKG*LKSQL 981
RG EHK LKSQL
Sbjct: 303 RGLEHKVYLKSQL 315
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 54,914,753
Number of extensions: 1701279
Number of successful extensions: 7058
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 7014
Number of HSP's successfully gapped: 1
Length of query: 408
Length of database: 18,874,504
Length adjustment: 105
Effective length of query: 303
Effective length of database: 15,374,224
Effective search space: 4658389872
Effective search space used: 4658389872
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-004145
(1225 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_060563.2| WD repeat-containing protein 74 [Homo sapiens]. 556 e-158
>ref|NP_060563.2| WD repeat-containing protein 74 [Homo sapiens].
Length = 385
Score = 556 bits (1434), Expect = e-158
Identities = 270/314 (85%), Positives = 281/314 (89%)
Frame = +1
Query: 40 MAAAEARWNHVWVGTDTGILKGVNLQRKQAVNYTAAGQPQREEAVSALCWGAGGETQILV 219
MAAA ARWNHVWVGT+TGILKGVNLQRKQA N+TA GQP+REEAVSALCWG GGETQ+LV
Sbjct: 1 MAAAAARWNHVWVGTETGILKGVNLQRKQAANFTAGGQPRREEAVSALCWGTGGETQMLV 60
Query: 220 GCADRTVKLFSTEEGRFQGQRHCPGGEGTFRGLAQVDGTLITCVESGILRVWHDNDKEAS 399
GCADRTVK FSTE+G FQGQRHCPGGEG FRGLAQ DGTLITCV+SGILRVWHD DK+ S
Sbjct: 61 GCADRTVKHFSTEDGIFQGQRHCPGGEGMFRGLAQADGTLITCVDSGILRVWHDKDKDTS 120
Query: 400 SDPLLELRVGPGVCRMRQDPSRPHVVATGGKENALKVWDLQGSEEPVFKAKNVRNDWLDL 579
SDPLLELRVGPGVCRMRQDP+ PHVVATGGKENALK+WDLQGSEEPVF+AKNVRNDWLDL
Sbjct: 121 SDPLLELRVGPGVCRMRQDPAHPHVVATGGKENALKIWDLQGSEEPVFRAKNVRNDWLDL 180
Query: 580 RVPIWDQDIQFLPESQKLVTCTGYHQVRVYDPASPQRRPVLEATYGEYPLTAMTLTPEGN 759
RVPIWDQDIQFLP SQKLVTCTGYHQVRVYDPASPQRRPVLE TYGEYPLTAMTLTP GN
Sbjct: 181 RVPIWDQDIQFLPGSQKLVTCTGYHQVRVYDPASPQRRPVLETTYGEYPLTAMTLTPGGN 240
Query: 760 SVIVGNTHGQLAEIDLRQGRLLGCLKGLAGSVRGLQCHPSSPS*PPVAWTES*GYTRIRI 939
SVIVGNTHGQLAEIDLRQGRLLGCLKGLAGSVRGLQCHPS P RI+
Sbjct: 241 SVIVGNTHGQLAEIDLRQGRLLGCLKGLAGSVRGLQCHPSKPLLASCGLDRVLRIHRIQN 300
Query: 940 PRGREHKG*LKSQL 981
PRG EHK LKSQL
Sbjct: 301 PRGLEHKVYLKSQL 314
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 53,641,755
Number of extensions: 1654086
Number of successful extensions: 6893
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 6847
Number of HSP's successfully gapped: 1
Length of query: 408
Length of database: 18,297,164
Length adjustment: 105
Effective length of query: 303
Effective length of database: 14,835,944
Effective search space: 4495291032
Effective search space used: 4495291032
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-004145
(1225 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_598900.1| WD repeat-containing protein 74 [Mus musculus]. 538 e-153
>ref|NP_598900.1| WD repeat-containing protein 74 [Mus musculus].
Length = 384
Score = 538 bits (1386), Expect = e-153
Identities = 262/314 (83%), Positives = 275/314 (87%)
Frame = +1
Query: 40 MAAAEARWNHVWVGTDTGILKGVNLQRKQAVNYTAAGQPQREEAVSALCWGAGGETQILV 219
MA A ARWNHVWVGT+TGILKGVNLQRK A N+T +GQP+REEAV+ALCWG GGETQILV
Sbjct: 1 MATASARWNHVWVGTETGILKGVNLQRKHAANFTPSGQPRREEAVNALCWGTGGETQILV 60
Query: 220 GCADRTVKLFSTEEGRFQGQRHCPGGEGTFRGLAQVDGTLITCVESGILRVWHDNDKEAS 399
GCADRTV+ F+ EEG F QR+CPGGEGTFRGLAQ DGTLITCV+SGILRVW +NDKEAS
Sbjct: 61 GCADRTVRYFNAEEGTFLSQRYCPGGEGTFRGLAQADGTLITCVDSGILRVWCENDKEAS 120
Query: 400 SDPLLELRVGPGVCRMRQDPSRPHVVATGGKENALKVWDLQGSEEPVFKAKNVRNDWLDL 579
SDPLLEL+VGPGVCRMRQDP+ HVVAT GKENALKVWDLQGSEEPVF+AKNVRNDWLDL
Sbjct: 121 SDPLLELKVGPGVCRMRQDPTHTHVVATCGKENALKVWDLQGSEEPVFRAKNVRNDWLDL 180
Query: 580 RVPIWDQDIQFLPESQKLVTCTGYHQVRVYDPASPQRRPVLEATYGEYPLTAMTLTPEGN 759
RVPIWDQD QFLP SQKLVTCTGYHQVRVYDP SPQRRPVLEATYGEYPLTAMTLTPEGN
Sbjct: 181 RVPIWDQDTQFLPGSQKLVTCTGYHQVRVYDPVSPQRRPVLEATYGEYPLTAMTLTPEGN 240
Query: 760 SVIVGNTHGQLAEIDLRQGRLLGCLKGLAGSVRGLQCHPSSPS*PPVAWTES*GYTRIRI 939
SVIVGNTHGQLAEID RQGRLLGCLKGLAGSVRGLQCHPS P RIR
Sbjct: 241 SVIVGNTHGQLAEIDFRQGRLLGCLKGLAGSVRGLQCHPSKPLLASCGLDRVLRIHRIRN 300
Query: 940 PRGREHKG*LKSQL 981
PRG EHK LKSQL
Sbjct: 301 PRGLEHKVYLKSQL 314
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 44,989,610
Number of extensions: 1360247
Number of successful extensions: 5597
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 5551
Number of HSP's successfully gapped: 1
Length of query: 408
Length of database: 15,617,559
Length adjustment: 104
Effective length of query: 304
Effective length of database: 12,493,815
Effective search space: 3798119760
Effective search space used: 3798119760
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-004145
(1225 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001230324.1| WD repeat domain 74 [Sus scrofa]. 599 e-172
>ref|NP_001230324.1| WD repeat domain 74 [Sus scrofa].
Length = 385
Score = 599 bits (1545), Expect = e-172
Identities = 295/314 (93%), Positives = 295/314 (93%)
Frame = +1
Query: 40 MAAAEARWNHVWVGTDTGILKGVNLQRKQAVNYTAAGQPQREEAVSALCWGAGGETQILV 219
MAAAEARWNHVWVGTDTGILKGVNLQRKQAVNYTAAGQPQREEAVSALCWGAGGETQILV
Sbjct: 1 MAAAEARWNHVWVGTDTGILKGVNLQRKQAVNYTAAGQPQREEAVSALCWGAGGETQILV 60
Query: 220 GCADRTVKLFSTEEGRFQGQRHCPGGEGTFRGLAQVDGTLITCVESGILRVWHDNDKEAS 399
GCADRTVKLFSTEEGRFQGQRHCPGGEGTFRGLAQVDGTLITCVESGILRVWHDNDKEAS
Sbjct: 61 GCADRTVKLFSTEEGRFQGQRHCPGGEGTFRGLAQVDGTLITCVESGILRVWHDNDKEAS 120
Query: 400 SDPLLELRVGPGVCRMRQDPSRPHVVATGGKENALKVWDLQGSEEPVFKAKNVRNDWLDL 579
SDPLLELRVGPGVCRMRQDPSRPHVVATGGKENALKVWDLQGSEEPVFKAKNVRNDWLDL
Sbjct: 121 SDPLLELRVGPGVCRMRQDPSRPHVVATGGKENALKVWDLQGSEEPVFKAKNVRNDWLDL 180
Query: 580 RVPIWDQDIQFLPESQKLVTCTGYHQVRVYDPASPQRRPVLEATYGEYPLTAMTLTPEGN 759
RVPIWDQDIQFLPESQKLVTCTGYHQVRVYDPASPQRRPVLEATYGEYPLTAMTLTPEGN
Sbjct: 181 RVPIWDQDIQFLPESQKLVTCTGYHQVRVYDPASPQRRPVLEATYGEYPLTAMTLTPEGN 240
Query: 760 SVIVGNTHGQLAEIDLRQGRLLGCLKGLAGSVRGLQCHPSSPS*PPVAWTES*GYTRIRI 939
SVIVGNTHGQLAEIDLRQGRLLGCLKGLAGSVRGLQCHPS P RIR
Sbjct: 241 SVIVGNTHGQLAEIDLRQGRLLGCLKGLAGSVRGLQCHPSKPLLASCGLDRVLRVHRIRN 300
Query: 940 PRGREHKG*LKSQL 981
PRG EHK LKSQL
Sbjct: 301 PRGLEHKVYLKSQL 314
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 34,548,347
Number of extensions: 1142667
Number of successful extensions: 4531
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 4508
Number of HSP's successfully gapped: 1
Length of query: 408
Length of database: 11,343,932
Length adjustment: 101
Effective length of query: 307
Effective length of database: 8,829,335
Effective search space: 2710605845
Effective search space used: 2710605845
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-004145
(1225 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr02 297 7e-78
>Sscrofa_Chr02
|| Length = 162569375
Score = 297 bits (150), Expect = 7e-78
Identities = 150/150 (100%)
Strand = Plus / Plus
Query: 409 ctcctagaactgagagtgggccctggggtgtgtaggatgcgccaggacccatctcgcccc 468
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8279201 ctcctagaactgagagtgggccctggggtgtgtaggatgcgccaggacccatctcgcccc 8279260
Query: 469 catgtggttgccacgggtgggaaggagaatgctttgaaggtgtgggacctgcaggggtct 528
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8279261 catgtggttgccacgggtgggaaggagaatgctttgaaggtgtgggacctgcaggggtct 8279320
Query: 529 gaggagcctgtgttcaaggccaagaacgtg 558
||||||||||||||||||||||||||||||
Sbjct: 8279321 gaggagcctgtgttcaaggccaagaacgtg 8279350
Score = 248 bits (125), Expect = 6e-63
Identities = 125/125 (100%)
Strand = Plus / Plus
Query: 208 cagatcctagtcggctgtgccgataggacagtgaagctcttcagcaccgaggagggcagg 267
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8277114 cagatcctagtcggctgtgccgataggacagtgaagctcttcagcaccgaggagggcagg 8277173
Query: 268 ttccagggccagaggcactgccccggaggcgagggcaccttccgaggcctcgcccaggtt 327
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8277174 ttccagggccagaggcactgccccggaggcgagggcaccttccgaggcctcgcccaggtt 8277233
Query: 328 gacgg 332
|||||
Sbjct: 8277234 gacgg 8277238
Score = 216 bits (109), Expect = 2e-53
Identities = 109/109 (100%)
Strand = Plus / Plus
Query: 102 aggggtgaaccttcagcgcaaacaagcggtaaactacacggcggcgggacagccgcagcg 161
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8276914 aggggtgaaccttcagcgcaaacaagcggtaaactacacggcggcgggacagccgcagcg 8276973
Query: 162 cgaggaggcggtgagcgccctgtgctggggcgcgggcggcgagacccag 210
|||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8276974 cgaggaggcggtgagcgccctgtgctggggcgcgggcggcgagacccag 8277022
Score = 212 bits (107), Expect = 3e-52
Identities = 139/147 (94%), Gaps = 2/147 (1%)
Strand = Plus / Plus
Query: 814 gggcgtttactgggctgtctgaaggggctggcgggcagcgtccgagggttgcagtgtcac 873
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8281326 gggcgtttactgggctgtctgaaggggctggcgggcagcgtccgagggttgcagtgtcac 8281385
Query: 874 ccttc-aagcccctcttagcctcctgtggcttggacagagtcctgagggtacaccagaat 932
||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||| ||
Sbjct: 8281386 ccttcaaagcccctcttagcctcctgtggcttggacagagtcctgagggtaca-caggat 8281444
Query: 933 ccgaatcccccggggccgggagcataa 959
||| | || ||||||| |||||||||
Sbjct: 8281445 ccggaatccacggggcctggagcataa 8281471
Score = 206 bits (104), Expect = 2e-50
Identities = 104/104 (100%)
Strand = Plus / Plus
Query: 655 caggtccgtgtctacgatccagcctccccccagcgcaggccagtcctcgaggccacctat 714
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8280523 caggtccgtgtctacgatccagcctccccccagcgcaggccagtcctcgaggccacctat 8280582
Query: 715 ggagagtatccactgacagccatgaccctcactcccgagggcaa 758
||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8280583 ggagagtatccactgacagccatgaccctcactcccgagggcaa 8280626
Score = 198 bits (100), Expect = 5e-48
Identities = 103/104 (99%)
Strand = Plus / Plus
Query: 556 gtgcggaatgattggcttgacctgagagttcccatctgggaccaggacatacagttcctc 615
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8279515 gtgcggaatgattggcttgacctgagagttcccatctgggaccaggacatacagttcctc 8279574
Query: 616 cctgagtcacagaagctggtcacctgtacagggtaccatcaggt 659
|||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 8279575 cctgagtcacagaagctggtcacctgtacaggataccatcaggt 8279618
Score = 190 bits (96), Expect = 1e-45
Identities = 102/104 (98%)
Strand = Plus / Plus
Query: 1 tgctgcgccggaagtgcgagccggctccgggtctccgttatggcggctgccgaggcgcgg 60
|||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||
Sbjct: 8276732 tgctgcgccggaagtgcgagccggatccggatctccgttatggcggctgccgaggcgcgg 8276791
Query: 61 tggaatcatgtgtgggtcggcaccgacaccggcatcctgaaagg 104
||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8276792 tggaatcatgtgtgggtcggcaccgacaccggcatcctgaaagg 8276835
Score = 153 bits (77), Expect = 3e-34
Identities = 77/77 (100%)
Strand = Plus / Plus
Query: 332 gcaccctcatcacgtgtgtggaatctgggatacttcgagtgtggcatgacaatgacaagg 391
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8278998 gcaccctcatcacgtgtgtggaatctgggatacttcgagtgtggcatgacaatgacaagg 8279057
Query: 392 aagcatcctctgaccca 408
|||||||||||||||||
Sbjct: 8279058 aagcatcctctgaccca 8279074
Score = 113 bits (57), Expect = 2e-22
Identities = 57/57 (100%)
Strand = Plus / Plus
Query: 759 ttcagtgattgtggggaacactcatgggcagctggcagaaattgaccttcggcaggg 815
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8280711 ttcagtgattgtggggaacactcatgggcagctggcagaaattgaccttcggcaggg 8280767
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 34,497,797
Number of extensions: 196
Number of successful extensions: 196
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 195
Number of HSP's successfully gapped: 9
Length of query: 1225
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1204
Effective length of database: 2,808,413,156
Effective search space: 3381329439824
Effective search space used: 3381329439824
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)