Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-004147
(947 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001032905.1| thymidylate synthase [Bos taurus]. 484 e-137
>ref|NP_001032905.1| thymidylate synthase [Bos taurus].
Length = 354
Score = 484 bits (1247), Expect = e-137
Identities = 231/247 (93%), Positives = 237/247 (95%)
Frame = +2
Query: 182 HGELQYLEQIEHILRCGFRKDDRTGTGTLSVFGMQARYSLRDQFPLLTTKRVFWKGVLEE 361
HGELQYL QIEHILRCGFR+DDRTGTGTLSVFGMQARY+LRD+FPLLTTKRVFWKGVLEE
Sbjct: 31 HGELQYLGQIEHILRCGFRRDDRTGTGTLSVFGMQARYNLRDEFPLLTTKRVFWKGVLEE 90
Query: 362 LLWFIKGSTNAKELSSKGVKIWDANGSRDFLDSLGFSSREEGDLGPVYGFQWRHFGAEYK 541
LLWFIKGSTNAKELSSKGVKIWDANGSRDFLD LGFS R EGDLGPVYGFQWRHFGAEYK
Sbjct: 91 LLWFIKGSTNAKELSSKGVKIWDANGSRDFLDGLGFSDRAEGDLGPVYGFQWRHFGAEYK 150
Query: 542 DMNSDYSGQGVDQLQKVIDTIKTNPDDRRIILCAWNPKDLPLMALPPCHALCQFYVVNGE 721
DM+S+YSGQGVDQLQKVIDTIKTNP+DRRIILCAWNPKDLPLMALPPCHALCQFYVVNGE
Sbjct: 151 DMDSEYSGQGVDQLQKVIDTIKTNPNDRRIILCAWNPKDLPLMALPPCHALCQFYVVNGE 210
Query: 722 LSCQLYQRSGDMGLGVPFNIASYALLTYMIAHITGLKPGDFVHTLGDAHIYLNHIEPLKI 901
LSCQLYQRSGDMGLGVPFNIASYALLTYMIAHIT LKPGDFVHTLGDAHIYLNHIEPLK
Sbjct: 211 LSCQLYQRSGDMGLGVPFNIASYALLTYMIAHITDLKPGDFVHTLGDAHIYLNHIEPLKT 270
Query: 902 QLQREPR 922
Q E R
Sbjct: 271 QALMELR 277
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 35,198,561
Number of extensions: 927552
Number of successful extensions: 3356
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 3340
Number of HSP's successfully gapped: 2
Length of query: 315
Length of database: 17,681,374
Length adjustment: 102
Effective length of query: 213
Effective length of database: 14,306,398
Effective search space: 3047262774
Effective search space used: 3047262774
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-004147
(947 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_849163.1| PREDICTED: similar to Thymidylate synthase (TS)... 503 e-143
Alignment gi|XP_533309.1| PREDICTED: similar to Thymidylate synthase (TS)... 503 e-142
>ref|XP_849163.1| PREDICTED: similar to Thymidylate synthase (TS) (TSase) [Canis
familiaris].
Length = 325
Score = 503 bits (1296), Expect = e-143
Identities = 236/251 (94%), Positives = 245/251 (97%)
Frame = +2
Query: 182 HGELQYLEQIEHILRCGFRKDDRTGTGTLSVFGMQARYSLRDQFPLLTTKRVFWKGVLEE 361
HGELQYL Q+EHIL CG RK DRTGTGTLSVFGMQARYSLRD+FPLLTTKRVFWKGVLEE
Sbjct: 29 HGELQYLRQVEHILSCGARKHDRTGTGTLSVFGMQARYSLRDEFPLLTTKRVFWKGVLEE 88
Query: 362 LLWFIKGSTNAKELSSKGVKIWDANGSRDFLDSLGFSSREEGDLGPVYGFQWRHFGAEYK 541
LLWFIKGSTNAKELSS+GVKIWDANGSRDFLDSLGF++REEGDLGP+YGFQWRHFGAEYK
Sbjct: 89 LLWFIKGSTNAKELSSRGVKIWDANGSRDFLDSLGFANREEGDLGPIYGFQWRHFGAEYK 148
Query: 542 DMNSDYSGQGVDQLQKVIDTIKTNPDDRRIILCAWNPKDLPLMALPPCHALCQFYVVNGE 721
D +SDYSGQGVDQLQKVIDTIKTNPDDRRIILC WNPKDLPLMALPPCHALCQFYVVNGE
Sbjct: 149 DKDSDYSGQGVDQLQKVIDTIKTNPDDRRIILCGWNPKDLPLMALPPCHALCQFYVVNGE 208
Query: 722 LSCQLYQRSGDMGLGVPFNIASYALLTYMIAHITGLKPGDFVHTLGDAHIYLNHIEPLKI 901
LSCQLYQRSGDMGLGVPFNIASYALLTYMIAHITGLKPGDF+HTLGDAHIYLNHIEPLKI
Sbjct: 209 LSCQLYQRSGDMGLGVPFNIASYALLTYMIAHITGLKPGDFIHTLGDAHIYLNHIEPLKI 268
Query: 902 QLQREPRPFPE 934
QLQREPRPFP+
Sbjct: 269 QLQREPRPFPK 279
>ref|XP_533309.1| PREDICTED: similar to Thymidylate synthase (TS) (TSase) [Canis
familiaris].
Length = 325
Score = 503 bits (1294), Expect = e-142
Identities = 236/251 (94%), Positives = 245/251 (97%)
Frame = +2
Query: 182 HGELQYLEQIEHILRCGFRKDDRTGTGTLSVFGMQARYSLRDQFPLLTTKRVFWKGVLEE 361
HGELQYL Q+EHIL CG RK DRTGTGTLSVFGMQARYSLRD+FPLLTTKRVFWKGVLEE
Sbjct: 29 HGELQYLGQVEHILSCGARKHDRTGTGTLSVFGMQARYSLRDEFPLLTTKRVFWKGVLEE 88
Query: 362 LLWFIKGSTNAKELSSKGVKIWDANGSRDFLDSLGFSSREEGDLGPVYGFQWRHFGAEYK 541
LLWFIKGSTNAKELSS+GVKIWDANGSRDFLDSLGF++REEGDLGP+YGFQWRHFGAEYK
Sbjct: 89 LLWFIKGSTNAKELSSRGVKIWDANGSRDFLDSLGFANREEGDLGPIYGFQWRHFGAEYK 148
Query: 542 DMNSDYSGQGVDQLQKVIDTIKTNPDDRRIILCAWNPKDLPLMALPPCHALCQFYVVNGE 721
D +SDYSGQGVDQLQKVIDTIKTNPDDRRIILC WNPKDLPLMALPPCHALCQFYVVNGE
Sbjct: 149 DKDSDYSGQGVDQLQKVIDTIKTNPDDRRIILCGWNPKDLPLMALPPCHALCQFYVVNGE 208
Query: 722 LSCQLYQRSGDMGLGVPFNIASYALLTYMIAHITGLKPGDFVHTLGDAHIYLNHIEPLKI 901
LSCQLYQRSGDMGLGVPFNIASYALLTYMIAHITGLKPGDF+HTLGDAHIYLNHIEPLKI
Sbjct: 209 LSCQLYQRSGDMGLGVPFNIASYALLTYMIAHITGLKPGDFIHTLGDAHIYLNHIEPLKI 268
Query: 902 QLQREPRPFPE 934
QLQREPRPFP+
Sbjct: 269 QLQREPRPFPK 279
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 36,698,728
Number of extensions: 957744
Number of successful extensions: 3213
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 3200
Number of HSP's successfully gapped: 2
Length of query: 315
Length of database: 18,874,504
Length adjustment: 103
Effective length of query: 212
Effective length of database: 15,440,896
Effective search space: 3273469952
Effective search space used: 3273469952
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-004147
(947 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001062.1| thymidylate synthase [Homo sapiens]. 507 e-144
Alignment gi|NP_001012734.2| putative uncharacterized protein C18orf56 [H... 57 2e-08
>ref|NP_001062.1| thymidylate synthase [Homo sapiens].
Length = 313
Score = 507 bits (1305), Expect = e-144
Identities = 238/251 (94%), Positives = 247/251 (98%)
Frame = +2
Query: 182 HGELQYLEQIEHILRCGFRKDDRTGTGTLSVFGMQARYSLRDQFPLLTTKRVFWKGVLEE 361
HGELQYL QI+HILRCG RKDDRTGTGTLSVFGMQARYSLRD+FPLLTTKRVFWKGVLEE
Sbjct: 28 HGELQYLGQIQHILRCGVRKDDRTGTGTLSVFGMQARYSLRDEFPLLTTKRVFWKGVLEE 87
Query: 362 LLWFIKGSTNAKELSSKGVKIWDANGSRDFLDSLGFSSREEGDLGPVYGFQWRHFGAEYK 541
LLWFIKGSTNAKELSSKGVKIWDANGSRDFLDSLGFS+REEGDLGPVYGFQWRHFGAEY+
Sbjct: 88 LLWFIKGSTNAKELSSKGVKIWDANGSRDFLDSLGFSTREEGDLGPVYGFQWRHFGAEYR 147
Query: 542 DMNSDYSGQGVDQLQKVIDTIKTNPDDRRIILCAWNPKDLPLMALPPCHALCQFYVVNGE 721
DM SDYSGQGVDQLQ+VIDTIKTNPDDRRII+CAWNP+DLPLMALPPCHALCQFYVVN E
Sbjct: 148 DMESDYSGQGVDQLQRVIDTIKTNPDDRRIIMCAWNPRDLPLMALPPCHALCQFYVVNSE 207
Query: 722 LSCQLYQRSGDMGLGVPFNIASYALLTYMIAHITGLKPGDFVHTLGDAHIYLNHIEPLKI 901
LSCQLYQRSGDMGLGVPFNIASYALLTYMIAHITGLKPGDF+HTLGDAHIYLNHIEPLKI
Sbjct: 208 LSCQLYQRSGDMGLGVPFNIASYALLTYMIAHITGLKPGDFIHTLGDAHIYLNHIEPLKI 267
Query: 902 QLQREPRPFPE 934
QLQREPRPFP+
Sbjct: 268 QLQREPRPFPK 278
>ref|NP_001012734.2| putative uncharacterized protein C18orf56 [Homo sapiens].
Length = 123
Score = 57.4 bits (137), Expect = 2e-08
Identities = 25/39 (64%), Positives = 27/39 (69%)
Frame = -1
Query: 353 KHPSRKHVWLSAEETDLSGCSAPACRTPTACRCPCGRPS 237
+HPSR+ LSGCSAPACR PT CRCPCGRPS
Sbjct: 90 RHPSRR-----GPRRHLSGCSAPACRIPTGCRCPCGRPS 123
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 36,064,766
Number of extensions: 946230
Number of successful extensions: 3385
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 3377
Number of HSP's successfully gapped: 2
Length of query: 315
Length of database: 18,297,164
Length adjustment: 102
Effective length of query: 213
Effective length of database: 14,934,836
Effective search space: 3181120068
Effective search space used: 3181120068
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-004147
(947 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_067263.1| thymidylate synthase [Mus musculus]. 511 e-145
>ref|NP_067263.1| thymidylate synthase [Mus musculus].
Length = 307
Score = 511 bits (1316), Expect = e-145
Identities = 239/251 (95%), Positives = 250/251 (99%)
Frame = +2
Query: 182 HGELQYLEQIEHILRCGFRKDDRTGTGTLSVFGMQARYSLRDQFPLLTTKRVFWKGVLEE 361
HGELQYL Q+EHILRCGF+K+DRTGTGTLSVFGMQARYSLRD+FPLLTTKRVFWKGVLEE
Sbjct: 22 HGELQYLRQVEHILRCGFKKEDRTGTGTLSVFGMQARYSLRDEFPLLTTKRVFWKGVLEE 81
Query: 362 LLWFIKGSTNAKELSSKGVKIWDANGSRDFLDSLGFSSREEGDLGPVYGFQWRHFGAEYK 541
LLWFIKGSTNAKELSSKGV+IWDANGSRDFLDSLGFS+R+EGDLGPVYGFQWRHFGAEYK
Sbjct: 82 LLWFIKGSTNAKELSSKGVRIWDANGSRDFLDSLGFSARQEGDLGPVYGFQWRHFGAEYK 141
Query: 542 DMNSDYSGQGVDQLQKVIDTIKTNPDDRRIILCAWNPKDLPLMALPPCHALCQFYVVNGE 721
DM+SDYSGQGVDQLQKVIDTIKTNPDDRRII+CAWNPKDLPLMALPPCHALCQFYVVNGE
Sbjct: 142 DMDSDYSGQGVDQLQKVIDTIKTNPDDRRIIMCAWNPKDLPLMALPPCHALCQFYVVNGE 201
Query: 722 LSCQLYQRSGDMGLGVPFNIASYALLTYMIAHITGLKPGDFVHTLGDAHIYLNHIEPLKI 901
LSCQLYQRSGDMGLGVPFNIASYALLTYMIAHITGL+PGDFVHTLGDAHIYLNHIEPLKI
Sbjct: 202 LSCQLYQRSGDMGLGVPFNIASYALLTYMIAHITGLQPGDFVHTLGDAHIYLNHIEPLKI 261
Query: 902 QLQREPRPFPE 934
QLQREPRPFP+
Sbjct: 262 QLQREPRPFPK 272
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 30,655,192
Number of extensions: 799374
Number of successful extensions: 3142
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 3095
Number of HSP's successfully gapped: 1
Length of query: 315
Length of database: 15,617,559
Length adjustment: 101
Effective length of query: 214
Effective length of database: 12,583,923
Effective search space: 2692959522
Effective search space used: 2692959522
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-004147
(947 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001230508.1| thymidylate synthetase [Sus scrofa]. 522 e-148
Alignment gi|XP_003361719.1| PREDICTED: thymidylate synthase-like, partia... 179 3e-45
>ref|NP_001230508.1| thymidylate synthetase [Sus scrofa].
Length = 314
Score = 522 bits (1345), Expect = e-148
Identities = 249/251 (99%), Positives = 250/251 (99%)
Frame = +2
Query: 182 HGELQYLEQIEHILRCGFRKDDRTGTGTLSVFGMQARYSLRDQFPLLTTKRVFWKGVLEE 361
HGELQYL QIEHILRCGFRKDDRTGTGTLSVFGMQARYSLRDQFPLLTTKRVFWKGVLEE
Sbjct: 29 HGELQYLGQIEHILRCGFRKDDRTGTGTLSVFGMQARYSLRDQFPLLTTKRVFWKGVLEE 88
Query: 362 LLWFIKGSTNAKELSSKGVKIWDANGSRDFLDSLGFSSREEGDLGPVYGFQWRHFGAEYK 541
LLWFIKGSTNAKELSSKGVKIWDANGSRDFLDSLGFSSREEGDLGPVYGFQWRHFGAEYK
Sbjct: 89 LLWFIKGSTNAKELSSKGVKIWDANGSRDFLDSLGFSSREEGDLGPVYGFQWRHFGAEYK 148
Query: 542 DMNSDYSGQGVDQLQKVIDTIKTNPDDRRIILCAWNPKDLPLMALPPCHALCQFYVVNGE 721
DMNSDYSGQGVDQLQKVIDTIKTNPDDRRIILCAWNPKDLPLMALPPCHALCQFYVVNGE
Sbjct: 149 DMNSDYSGQGVDQLQKVIDTIKTNPDDRRIILCAWNPKDLPLMALPPCHALCQFYVVNGE 208
Query: 722 LSCQLYQRSGDMGLGVPFNIASYALLTYMIAHITGLKPGDFVHTLGDAHIYLNHIEPLKI 901
LSCQLYQRSGDMGLGVPFNIASYALLTYMIAHITGLKPGDFVHTLGDAHIYLNHIEPLKI
Sbjct: 209 LSCQLYQRSGDMGLGVPFNIASYALLTYMIAHITGLKPGDFVHTLGDAHIYLNHIEPLKI 268
Query: 902 QLQREPRPFPE 934
QLQREPRPFP+
Sbjct: 269 QLQREPRPFPK 279
>ref|XP_003361719.1| PREDICTED: thymidylate synthase-like, partial [Sus scrofa].
Length = 128
Score = 179 bits (453), Expect = 3e-45
Identities = 93/123 (75%), Positives = 97/123 (78%)
Frame = +2
Query: 185 GELQYLEQIEHILRCGFRKDDRTGTGTLSVFGMQARYSLRDQFPLLTTKRVFWKGVLEEL 364
GEL L ++ C GT G + R S+ DQFPLLTTKRVFWKGVLEEL
Sbjct: 7 GELGALNRVASRKECVLGLLGSGFQGTRGQDGGRHRTSV-DQFPLLTTKRVFWKGVLEEL 65
Query: 365 LWFIKGSTNAKELSSKGVKIWDANGSRDFLDSLGFSSREEGDLGPVYGFQWRHFGAEYKD 544
LWFIKGSTNAKELSSKGVKIWDANGSRDFLDSLGFSSREEGDLGPVYGFQWRHFGAEYKD
Sbjct: 66 LWFIKGSTNAKELSSKGVKIWDANGSRDFLDSLGFSSREEGDLGPVYGFQWRHFGAEYKD 125
Query: 545 MNS 553
MNS
Sbjct: 126 MNS 128
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 22,672,219
Number of extensions: 596432
Number of successful extensions: 2094
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 2067
Number of HSP's successfully gapped: 2
Length of query: 315
Length of database: 11,343,932
Length adjustment: 99
Effective length of query: 216
Effective length of database: 8,879,129
Effective search space: 1917891864
Effective search space used: 1917891864
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 33 (17.3 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-004147
(947 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|GL896245.1| Sus scrofa unplaced genomic scaffold chrU_scaffol... 353 1e-94
gb|GL895143.1| Sus scrofa unplaced genomic scaffold chrU_scaffol... 351 4e-94
Sscrofa_Chr06 337 7e-90
Sscrofa_Chr05 293 9e-77
>gb|GL896245.1| Sus scrofa unplaced genomic scaffold chrU_scaffold604
Length = 50337
Score = 353 bits (178), Expect = 1e-94
Identities = 178/178 (100%)
Strand = Plus / Minus
Query: 655 agatctccctctcatggccctccccccatgccatgccctttgccagttctacgtggtaaa 714
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 47503 agatctccctctcatggccctccccccatgccatgccctttgccagttctacgtggtaaa 47444
Query: 715 tggggagctgtcctgccagttgtaccagcggtcgggagacatgggactgggtgtgccctt 774
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 47443 tggggagctgtcctgccagttgtaccagcggtcgggagacatgggactgggtgtgccctt 47384
Query: 775 caacatcgccagctacgccctgctcacctacatgatcgcacacatcacaggcctgaag 832
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 47383 caacatcgccagctacgccctgctcacctacatgatcgcacacatcacaggcctgaag 47326
Score = 208 bits (105), Expect = 4e-51
Identities = 105/105 (100%)
Strand = Plus / Minus
Query: 552 cagattattcagggcaaggagtagaccaactgcaaaaagtgatcgacacaatcaaaacca 611
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 48315 cagattattcagggcaaggagtagaccaactgcaaaaagtgatcgacacaatcaaaacca 48256
Query: 612 accctgacgacagaagaatcatcctgtgtgcttggaatccgaaag 656
|||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 48255 accctgacgacagaagaatcatcctgtgtgcttggaatccgaaag 48211
Score = 147 bits (74), Expect = 1e-32
Identities = 74/74 (100%)
Strand = Plus / Minus
Query: 831 agccaggtgacttcgtacacacgttgggagatgcccacatttacctgaatcacattgagc 890
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 46701 agccaggtgacttcgtacacacgttgggagatgcccacatttacctgaatcacattgagc 46642
Query: 891 cgctgaaaatacag 904
||||||||||||||
Sbjct: 46641 cgctgaaaatacag 46628
Score = 73.8 bits (37), Expect = 2e-10
Identities = 44/45 (97%), Gaps = 1/45 (2%)
Strand = Plus / Minus
Query: 903 agcttcagcgggaaccaaggcctttccccgaaactcaaaatcctt 947
||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 45273 agcttcagcgggaaccaaggccttt-cccgaaactcaaaatcctt 45230
>gb|GL895143.1| Sus scrofa unplaced genomic scaffold chrU_scaffold3738
Length = 13213
Score = 351 bits (177), Expect = 4e-94
Identities = 177/177 (100%)
Strand = Plus / Minus
Query: 378 agggatccacaaacgctaaggaactgtcctccaagggagtgaaaatctgggatgccaatg 437
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2266 agggatccacaaacgctaaggaactgtcctccaagggagtgaaaatctgggatgccaatg 2207
Query: 438 ggtcccgagacttcttggacagcctgggattctcctccagagaagaaggggatttaggcc 497
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2206 ggtcccgagacttcttggacagcctgggattctcctccagagaagaaggggatttaggcc 2147
Query: 498 ctgtttatggctttcagtggaggcattttggagctgaatacaaagatatgaattcag 554
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2146 ctgtttatggctttcagtggaggcattttggagctgaatacaaagatatgaattcag 2090
Score = 161 bits (81), Expect = 9e-37
Identities = 90/93 (96%)
Strand = Plus / Minus
Query: 156 agggcgccgagccgcggccgcagccccacggggagctgcagtacctggagcagatcgagc 215
||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||
Sbjct: 6503 agggcgccgagccgcggccgcagaaccacggggagctgcagtacctggggcagatcgagc 6444
Query: 216 acatcctccgttgcggcttccggaaggacgacc 248
|||||||||||||||||||||||||||||||||
Sbjct: 6443 acatcctccgttgcggcttccggaaggacgacc 6411
Score = 153 bits (77), Expect = 2e-34
Identities = 77/77 (100%)
Strand = Plus / Minus
Query: 304 agatcagtttcctctgctgacaaccaaacgtgttttctggaagggtgttttggaggagtt 363
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4606 agatcagtttcctctgctgacaaccaaacgtgttttctggaagggtgttttggaggagtt 4547
Query: 364 gctgtggtttatcaagg 380
|||||||||||||||||
Sbjct: 4546 gctgtggtttatcaagg 4530
Score = 125 bits (63), Expect = 5e-26
Identities = 63/63 (100%)
Strand = Plus / Minus
Query: 76 cagccgcgccagcacccacgccatgcctgctgccggctccgaactgcctcgcccgccatc 135
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6666 cagccgcgccagcacccacgccatgcctgctgccggctccgaactgcctcgcccgccatc 6607
Query: 136 gcc 138
|||
Sbjct: 6606 gcc 6604
Score = 60.0 bits (30), Expect = 2e-06
Identities = 33/34 (97%)
Strand = Plus / Minus
Query: 6 ccggagctttggcgggaaaagaggcgtcgggaaa 39
|||| |||||||||||||||||||||||||||||
Sbjct: 6800 ccggcgctttggcgggaaaagaggcgtcgggaaa 6767
>Sscrofa_Chr06
|| Length = 157765593
Score = 337 bits (170), Expect = 7e-90
Identities = 376/439 (85%), Gaps = 8/439 (1%)
Strand = Plus / Plus
Query: 509 tttcagtggaggcattttggagctgaatacaaagatatgaattcagattattcagggcaa 568
|||||||||||||||||||| |||| |||||||||||||||||||||||| ||||| |||
Sbjct: 57092470 tttcagtggaggcattttgg-gctgcatacaaagatatgaattcagattactcaggccaa 57092528
Query: 569 ggagtagaccaactgcaaaaagtgatcgacacaatcaaaaccaaccctgacgacagaaga 628
||||||||||||||||||||||| | ||||||||||||| |||| |||| |||||||||
Sbjct: 57092529 ggagtagaccaactgcaaaaagt-aaggacacaatcaaaagcaactctgaggacagaaga 57092587
Query: 629 atcatcctgtgtgcttggaatccgaaagatctccctctcatggccctccccccatgccat 688
|||||||||||||||||| |||| ||||| |||||||||| | ||| ||| |||||
Sbjct: 57092588 atcatcctgtgtgcttgggatcccaaagagctccctctcaagccccctgccctgtgccac 57092647
Query: 689 gccctttgccagttctacgtggtaaatggggagctgtcctgccagttgtaccagcggtcg 748
|||||||| |||||||| | || |||||||||||| |||| |||||||| ||||
Sbjct: 57092648 accctttgcaagttctac----tgaacagggagctgtcctaccagctgtaccaggagtcg 57092703
Query: 749 ggagacatgggactgggtgtgcccttcaacatcgccagctacgccctgctcacctacatg 808
|| |||||||| ||||| |||| ||||||||| ||||||||| || ||||||||||||||
Sbjct: 57092704 ggggacatgggtctgggcgtgcacttcaacattgccagctaccccttgctcacctacatg 57092763
Query: 809 atcgcacacatcacaggcctgaagccaggtgacttcgtacacacgttgggagatgcccac 868
||| ||||||||||||||||||||||| ||||| | |||||| | |||| |||||| |
Sbjct: 57092764 atcccacacatcacaggcctgaagcca-tagactttgaacacacttcgggacatgcccgc 57092822
Query: 869 atttacctgaatcacattgagccgctgaaaatacagcttcagcgggaaccaaggcctttc 928
||| |||||||| |||||| || ||||||||| |||||||| | | ||||||||||||
Sbjct: 57092823 attggcctgaatcgcattgaaccactgaaaatagagcttcagtgaggaccaaggccttt- 57092881
Query: 929 cccgaaactcaaaatcctt 947
||| || ||||||||||||
Sbjct: 57092882 cccaaagctcaaaatcctt 57092900
Score = 182 bits (92), Expect = 2e-43
Identities = 235/281 (83%), Gaps = 15/281 (5%)
Strand = Plus / Plus
Query: 148 gcaggagcagggcgccgagccgcggccgcagccccacggggagctgcagtacctggagca 207
||||||||||||| | ||||| |||||| |||||||||||||||||||||||| | |||
Sbjct: 57092150 gcaggagcagggccctgagccaaggccgccgccccacggggagctgcagtacctagggca 57092209
Query: 208 gatcgagcacatcctccgttgcggcttccggaaggacgaccgcacgggcaccggcacgct 267
|||| ||||| ||| |||||| |||||| || ||| |||||| ||||| ||
Sbjct: 57092210 gatc---------ctccgctgcagcttccagaaggatgagggcatgggcactggcaccct 57092260
Query: 268 gtcggtgttcggcatgcaggcgcgctacagcctgagagatcagtttcctctgctgacaac 327
| |||| ||||||||||| |||||| || |||||| | |||||||||||||||||
Sbjct: 57092261 a-ctgtgtctggcatgcaggcctgctacaccccaagagatgaatttcctctgctgacaac 57092319
Query: 328 caaacgtgttttctggaagggtgttttggaggagttgctg-tggtttat----caaggga 382
||||| ||||||||||||||| ||||||||||||||||| |||||||| |||||||
Sbjct: 57092320 caaacatgttttctggaagggcattttggaggagttgctgttggtttatcaaacaaggga 57092379
Query: 383 tccacaaacgctaaggaactgtcctccaagggagtgaaaat 423
||||||||||||||||||||||||||||| |||||||||||
Sbjct: 57092380 tccacaaacgctaaggaactgtcctccaaaggagtgaaaat 57092420
>Sscrofa_Chr05
|| Length = 111506441
Score = 293 bits (148), Expect = 9e-77
Identities = 568/703 (80%), Gaps = 25/703 (3%)
Strand = Plus / Minus
Query: 240 aggacgaccgcacgggcaccggcacgctgtcggtgttcggcatgcaggcgcgctacagcc 299
|||| |||| ||||||||||| ||| | | || |||| ||| |||||||||||||||||
Sbjct: 25137546 aggatgacctcacgggcaccgccaccgtataggcgttcagcaagcaggcgcgctacagcc 25137487
Query: 300 tgagagatcagtttcctctgctgacaaccaaacgtgttttctggaagggtgttttggagg 359
||| ||| | ||||| ||||||||||||||||||||||||| ||| |||||| | |||
Sbjct: 25137486 tgaaggatgaatttcccctgctgacaaccaaacgtgttttctagaacggtgttaggaagg 25137427
Query: 360 agttgctgtggtttatcaagggatccacaaacgctaaggaactgtcctccaagggagtga 419
||||| ||||| ||||||| ||||||||| ||||| || ||||| |||||||||||||
Sbjct: 25137426 agttg---tggttgatcaaggtatccacaaatgctaaagacctgtcttccaagggagtga 25137370
Query: 420 aaatctgggatgccaatgggtcccgagacttcttggacagcctgggattctcctccagag 479
|||||||||||||| ||| ||| |||||||| |||| |||||||| |||||| |||
Sbjct: 25137369 aaatctgggatgcccttggatcctgagacttc-tggaaagcctggggttctccacca--- 25137314
Query: 480 aagaaggggatttaggccctgtttatggctttcagtggaggcattttggagctgaataca 539
||||||||||||||||||| ||||||||||| | ||| ||| ||| | | ||||||
Sbjct: 25137313 aagaaggggatttaggcccagtttatggcttaccgtgagggcgtttgagggtcaaataca 25137254
Query: 540 aagatatgaattcaga-ttattcagggcaaggagtagaccaactgcaaaaagtgatcgac 598
|||||||| || |||| || |||||| | ||| |||||||||||||| ||||| |||
Sbjct: 25137253 aagatatggatgcagattttttcaggtggaaaagtggaccaactgcaaaaggtgattgac 25137194
Query: 599 acaatcaaaaccaaccctgacgacagaagaatcatcctgtgtgcttggaatccgaaagat 658
|||||| || |||| ||||| ||| || |||||||||||||||||||||||| ||||||
Sbjct: 25137193 acaatcgtaagcaacactgacaacacaacaatcatcctgtgtgcttggaatccaaaagat 25137134
Query: 659 ctccctctcatggccctccc-----------cccatgccatgccctttgccagttctacg 707
|| ||| |||||||| | || |||| |||||||||||||||| |
Sbjct: 25137133 ct---tcttgtggccctctcccactctgctgcctgtgcctcgccctttgccagttctgtg 25137077
Query: 708 tggtaaatggggagctgtcctgccagttgtaccagcggtcgggagacatgggactgggtg 767
| || || | |||||| |||||||| | || ||| ||||||||| |||| |||||||
Sbjct: 25137076 tagtgaactgtgagctgccctgccagctatatcagaggtcgggag--atggtcctgggtg 25137019
Query: 768 tgcccttcaacatcgccagcta-cgccctgctcacctacatgatcgcacacatcacaggc 826
|||||||||||||| |||||| | ||||||||||||||| |||| ||||| | |||||
Sbjct: 25137018 tgcccttcaacatcagcagctacctccctgctcacctacacgatcacacacgttacaggt 25136959
Query: 827 ctgaagccaggtgacttcgtacacacgttgggagatgcccacatttacctgaatcacatt 886
||||||| || ||||| |||||| | |||||| |||| ||| | || ||||| |||| |
Sbjct: 25136958 ctgaagctgggcgactttgtacacgctttgggatatgcacacgtctatctgaaccacact 25136899
Query: 887 gagccgctgaaaatacagcttcagcgggaaccaaggcctttcc 929
|||||||||||||| |||||||| | ||||||||||||||||
Sbjct: 25136898 gagccgctgaaaatgaagcttcagggagaaccaaggcctttcc 25136856
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 24,092,864
Number of extensions: 128
Number of successful extensions: 128
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 120
Number of HSP's successfully gapped: 16
Length of query: 947
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 926
Effective length of database: 2,808,413,156
Effective search space: 2600590582456
Effective search space used: 2600590582456
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 29 (58.0 bits)