Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-004153
(922 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_861528.1| tRNA (cytosine-5-)-methyltransferase [Bos tauru... 505 e-143
Alignment gi|NP_872592.2| DNA (cytosine-5)-methyltransferase 1 [Bos tauru... 54 3e-07
>ref|NP_861528.1| tRNA (cytosine-5-)-methyltransferase [Bos taurus].
Length = 391
Score = 505 bits (1301), Expect = e-143
Identities = 251/278 (90%), Positives = 262/278 (94%)
Frame = +1
Query: 88 MEPLRVLELYSGIGGMHQALRESCIPAQVVAAIDVNTVANEVYKYNFPHTQLLAKTIEGV 267
MEPLR LELYSGIGGMHQALRESCIPAQVVAA+DVNTVANEVYKYNFPHTQLLAKTIEG+
Sbjct: 1 MEPLRALELYSGIGGMHQALRESCIPAQVVAAVDVNTVANEVYKYNFPHTQLLAKTIEGI 60
Query: 268 TLEEFDRLSFNMVLMSPPCQPFTRIGLQGDVTDPRTNSFLYILDILPRLQKLPKYILLEN 447
TLEEFDRLSFNM+LMSPPCQPFTRIGLQGDVTDPRTNSFL+ILDILPRLQKLPKYILLEN
Sbjct: 61 TLEEFDRLSFNMILMSPPCQPFTRIGLQGDVTDPRTNSFLHILDILPRLQKLPKYILLEN 120
Query: 448 VKGFEVSSTRDLLIQTIENCGFQYQEFLLSPTSLGIPNSRLRYFLIAKLQSEPFPFQAPG 627
VKGFE+SSTRDLLIQTIENCGFQYQEFLLSPTSLGIPNSRLRYFLIAKLQ EPFPFQAPG
Sbjct: 121 VKGFEMSSTRDLLIQTIENCGFQYQEFLLSPTSLGIPNSRLRYFLIAKLQPEPFPFQAPG 180
Query: 628 QVLMEFPQMESEHPQKHAIDAQSKIEEKKIERNICLDSSAQCSGKEAILFKLETAGEIDR 807
QVLMEFP+ ESEHP K+AI+A+ K EEKK IC DSS QCSGKEAILFKLETAGEIDR
Sbjct: 181 QVLMEFPKTESEHPPKYAINAEKKTEEKKTGPKICFDSSTQCSGKEAILFKLETAGEIDR 240
Query: 808 KHQQDSDLSVPMLKGFLEDDIDMNSYFLPPKSLLPYAL 921
KHQQDSDLSV MLK FLEDDID +S+FLPPKSLL YAL
Sbjct: 241 KHQQDSDLSVRMLKDFLEDDIDKHSFFLPPKSLLRYAL 278
>ref|NP_872592.2| DNA (cytosine-5)-methyltransferase 1 [Bos taurus].
Length = 1611
Score = 53.5 bits (127), Expect = 3e-07
Identities = 49/194 (25%), Positives = 88/194 (45%), Gaps = 17/194 (8%)
Frame = +1
Query: 82 VGMEPLRVLELYSGIGGMHQALRESCIPAQVVAAIDVNTVANEVYKYNFPHTQ------- 240
+ + LR L+++SG GG+ + ++ I ++ + AI++ A + ++ N P +
Sbjct: 1131 IKLPKLRTLDVFSGCGGLSEGFHQAGI-SETLWAIEMWDPAAQAFRLNNPGSTVFTEDCN 1189
Query: 241 -LLAKTIEG-VTLEEFDRL----SFNMVLMSPPCQPFTRIGLQGDVTDPRTNSFLYILDI 402
LL + G VT +L M+ PPCQ F+ + T + + L + +
Sbjct: 1190 VLLKLVMAGEVTNSRGQKLPQKGDVEMLCGGPPCQGFSGMNRFNSRTYSKFKNSLVVSFL 1249
Query: 403 LPRLQKLPKYILLENVKGFEVSSTRDLLIQTIENC----GFQYQEFLLSPTSLGIPNSRL 570
P+Y LLENV+ F VS R ++++ C G+Q +L G+ +R
Sbjct: 1250 SYCDYYRPRYFLLENVRNF-VSFKRSMVLKLTLRCLVRMGYQCTFGVLQAGQYGVAQTRR 1308
Query: 571 RYFLIAKLQSEPFP 612
R ++A EP P
Sbjct: 1309 RAIILAAAPGEPLP 1322
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 32,176,568
Number of extensions: 776581
Number of successful extensions: 1936
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 1933
Number of HSP's successfully gapped: 2
Length of query: 307
Length of database: 17,681,374
Length adjustment: 102
Effective length of query: 205
Effective length of database: 14,306,398
Effective search space: 2932811590
Effective search space used: 2932811590
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-004153
(922 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_848593.1| PREDICTED: similar to DNA (cytosine-5)-methyltr... 498 e-141
Alignment gi|XP_544244.1| PREDICTED: similar to DNA methyltransferase 2 i... 441 e-124
Alignment gi|XP_856563.1| PREDICTED: similar to DNA methyltransferase 2 i... 391 e-109
Alignment gi|XP_533919.2| PREDICTED: similar to DNA (cytosine-5)-methyltr... 52 1e-06
>ref|XP_848593.1| PREDICTED: similar to DNA (cytosine-5)-methyltransferase-like
protein 2 (Dnmt2) (DNA methyltransferase homolog HsaIIP)
(DNA MTase homolog HsaIIP) (M.HsaIIP) (PuMet) isoform 2
[Canis familiaris].
Length = 391
Score = 498 bits (1282), Expect = e-141
Identities = 244/278 (87%), Positives = 259/278 (93%)
Frame = +1
Query: 88 MEPLRVLELYSGIGGMHQALRESCIPAQVVAAIDVNTVANEVYKYNFPHTQLLAKTIEGV 267
MEPLRVLELYSGIGGMHQALRESCIPAQVVAAIDVNTVANEVYKYNFPHTQLLAKTIEG+
Sbjct: 1 MEPLRVLELYSGIGGMHQALRESCIPAQVVAAIDVNTVANEVYKYNFPHTQLLAKTIEGI 60
Query: 268 TLEEFDRLSFNMVLMSPPCQPFTRIGLQGDVTDPRTNSFLYILDILPRLQKLPKYILLEN 447
TLEEFD+LSFNM+LMSPPCQPFTRIGLQGDVTDPRTNS LYIL+ILPRLQKLPKY+LLEN
Sbjct: 61 TLEEFDKLSFNMILMSPPCQPFTRIGLQGDVTDPRTNSLLYILNILPRLQKLPKYVLLEN 120
Query: 448 VKGFEVSSTRDLLIQTIENCGFQYQEFLLSPTSLGIPNSRLRYFLIAKLQSEPFPFQAPG 627
VKGFEVSSTRDLLIQT+ENCGFQYQEFLLSPTS GIPNSRLRYFLIAKLQSEP PFQAPG
Sbjct: 121 VKGFEVSSTRDLLIQTLENCGFQYQEFLLSPTSFGIPNSRLRYFLIAKLQSEPLPFQAPG 180
Query: 628 QVLMEFPQMESEHPQKHAIDAQSKIEEKKIERNICLDSSAQCSGKEAILFKLETAGEIDR 807
QVLMEFP+ ESE+P+K+ IDA++KIE KKIE NIC D QCSGKE ILFKLET E+DR
Sbjct: 181 QVLMEFPKTESENPEKNTIDAENKIERKKIEPNICFDKGRQCSGKETILFKLETIQELDR 240
Query: 808 KHQQDSDLSVPMLKGFLEDDIDMNSYFLPPKSLLPYAL 921
KH QD+DLSV MLK FLEDD+DMN YFLPPKSLL YAL
Sbjct: 241 KHHQDNDLSVQMLKDFLEDDVDMNQYFLPPKSLLRYAL 278
>ref|XP_544244.1| PREDICTED: similar to DNA methyltransferase 2 isoform b isoform 1
[Canis familiaris].
Length = 367
Score = 441 bits (1134), Expect = e-124
Identities = 222/278 (79%), Positives = 236/278 (84%)
Frame = +1
Query: 88 MEPLRVLELYSGIGGMHQALRESCIPAQVVAAIDVNTVANEVYKYNFPHTQLLAKTIEGV 267
MEPLRVLELYSGIGGMHQALRESCIPAQVVAAIDVNTVANEVYKYNFPHTQLLAKTIEG+
Sbjct: 1 MEPLRVLELYSGIGGMHQALRESCIPAQVVAAIDVNTVANEVYKYNFPHTQLLAKTIEGI 60
Query: 268 TLEEFDRLSFNMVLMSPPCQPFTRIGLQGDVTDPRTNSFLYILDILPRLQKLPKYILLEN 447
TLEEFD+LSFNM+LMSPPCQPFTR LQKLPKY+LLEN
Sbjct: 61 TLEEFDKLSFNMILMSPPCQPFTR------------------------LQKLPKYVLLEN 96
Query: 448 VKGFEVSSTRDLLIQTIENCGFQYQEFLLSPTSLGIPNSRLRYFLIAKLQSEPFPFQAPG 627
VKGFEVSSTRDLLIQT+ENCGFQYQEFLLSPTS GIPNSRLRYFLIAKLQSEP PFQAPG
Sbjct: 97 VKGFEVSSTRDLLIQTLENCGFQYQEFLLSPTSFGIPNSRLRYFLIAKLQSEPLPFQAPG 156
Query: 628 QVLMEFPQMESEHPQKHAIDAQSKIEEKKIERNICLDSSAQCSGKEAILFKLETAGEIDR 807
QVLMEFP+ ESE+P+K+ IDA++KIE KKIE NIC D QCSGKE ILFKLET E+DR
Sbjct: 157 QVLMEFPKTESENPEKNTIDAENKIERKKIEPNICFDKGRQCSGKETILFKLETIQELDR 216
Query: 808 KHQQDSDLSVPMLKGFLEDDIDMNSYFLPPKSLLPYAL 921
KH QD+DLSV MLK FLEDD+DMN YFLPPKSLL YAL
Sbjct: 217 KHHQDNDLSVQMLKDFLEDDVDMNQYFLPPKSLLRYAL 254
>ref|XP_856563.1| PREDICTED: similar to DNA methyltransferase 2 isoform c isoform 3
[Canis familiaris].
Length = 345
Score = 391 bits (1005), Expect = e-109
Identities = 201/278 (72%), Positives = 214/278 (76%)
Frame = +1
Query: 88 MEPLRVLELYSGIGGMHQALRESCIPAQVVAAIDVNTVANEVYKYNFPHTQLLAKTIEGV 267
MEPLRVLELYSGIGGMHQALRESCIPAQVVAAIDVNTVANEVYKYNFPHTQLLAKTIEG+
Sbjct: 1 MEPLRVLELYSGIGGMHQALRESCIPAQVVAAIDVNTVANEVYKYNFPHTQLLAKTIEGI 60
Query: 268 TLEEFDRLSFNMVLMSPPCQPFTRIGLQGDVTDPRTNSFLYILDILPRLQKLPKYILLEN 447
TLEEFD+LSFNM+LMSPPCQPFT
Sbjct: 61 TLEEFDKLSFNMILMSPPCQPFT------------------------------------- 83
Query: 448 VKGFEVSSTRDLLIQTIENCGFQYQEFLLSPTSLGIPNSRLRYFLIAKLQSEPFPFQAPG 627
RDLLIQT+ENCGFQYQEFLLSPTS GIPNSRLRYFLIAKLQSEP PFQAPG
Sbjct: 84 ---------RDLLIQTLENCGFQYQEFLLSPTSFGIPNSRLRYFLIAKLQSEPLPFQAPG 134
Query: 628 QVLMEFPQMESEHPQKHAIDAQSKIEEKKIERNICLDSSAQCSGKEAILFKLETAGEIDR 807
QVLMEFP+ ESE+P+K+ IDA++KIE KKIE NIC D QCSGKE ILFKLET E+DR
Sbjct: 135 QVLMEFPKTESENPEKNTIDAENKIERKKIEPNICFDKGRQCSGKETILFKLETIQELDR 194
Query: 808 KHQQDSDLSVPMLKGFLEDDIDMNSYFLPPKSLLPYAL 921
KH QD+DLSV MLK FLEDD+DMN YFLPPKSLL YAL
Sbjct: 195 KHHQDNDLSVQMLKDFLEDDVDMNQYFLPPKSLLRYAL 232
>ref|XP_533919.2| PREDICTED: similar to DNA (cytosine-5)-methyltransferase 1 (Dnmt1)
(DNA methyltransferase HsaI) (DNA MTase HsaI) (MCMT)
(M.HsaI) [Canis familiaris].
Length = 1645
Score = 51.6 bits (122), Expect = 1e-06
Identities = 63/260 (24%), Positives = 112/260 (43%), Gaps = 17/260 (6%)
Frame = +1
Query: 16 RGRGKMGQQDRQA*LRDDGGGGVGMEPLRVLELYSGIGGMHQALRESCIPAQVVAAIDVN 195
+G+GK G+ Q + + + LR L+++SG GG+ + ++ I ++ + AI++
Sbjct: 1144 KGKGK-GKAKSQTCEPSEPETEIKLPKLRTLDVFSGCGGLSEGFHQAGI-SETLWAIEMW 1201
Query: 196 TVANEVYKYNFPHTQ--------LLAKTIEG-VTLEEFDRL----SFNMVLMSPPCQPFT 336
A + ++ N P + LL + G T +L M+ PPCQ F+
Sbjct: 1202 DPAAQAFRLNNPGSTVFTEDCNVLLKLVMAGEATNSRGQKLPQKGDVEMLCGGPPCQGFS 1261
Query: 337 RIGLQGDVTDPRTNSFLYILDILPRLQKLPKYILLENVKGFEVSSTRDLLIQTIENC--- 507
+ T + + L + + P+Y LLENV+ F VS R ++++ C
Sbjct: 1262 GMNRFNSRTYSKFKNSLVVSFLSYCDYYRPRYFLLENVRNF-VSFKRSMVLKLTLRCLVR 1320
Query: 508 -GFQYQEFLLSPTSLGIPNSRLRYFLIAKLQSEPFPFQAPGQVLMEFPQMESEHPQKHAI 684
G+Q +L G+ +R R ++A APG+ L FP+ + A
Sbjct: 1321 MGYQCTFGVLQAGQYGVAQTRRRAIILA---------AAPGEKLPLFPEPLHVFAPR-AC 1370
Query: 685 DAQSKIEEKKIERNICLDSS 744
+++KK NI SS
Sbjct: 1371 QLSVVVDDKKFVSNITRLSS 1390
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 33,579,874
Number of extensions: 800211
Number of successful extensions: 2030
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 2028
Number of HSP's successfully gapped: 5
Length of query: 307
Length of database: 18,874,504
Length adjustment: 102
Effective length of query: 205
Effective length of database: 15,474,232
Effective search space: 3172217560
Effective search space used: 3172217560
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-004153
(922 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_004403.1| tRNA (cytosine(38)-C(5))-methyltransferase [Hom... 486 e-137
Alignment gi|NP_001124295.1| DNA (cytosine-5)-methyltransferase 1 isoform... 51 1e-06
Alignment gi|NP_001370.1| DNA (cytosine-5)-methyltransferase 1 isoform b ... 51 1e-06
>ref|NP_004403.1| tRNA (cytosine(38)-C(5))-methyltransferase [Homo sapiens].
Length = 391
Score = 486 bits (1251), Expect = e-137
Identities = 241/278 (86%), Positives = 258/278 (92%)
Frame = +1
Query: 88 MEPLRVLELYSGIGGMHQALRESCIPAQVVAAIDVNTVANEVYKYNFPHTQLLAKTIEGV 267
MEPLRVLELYSG+GGMH ALRESCIPAQVVAAIDVNTVANEVYKYNFPHTQLLAKTIEG+
Sbjct: 1 MEPLRVLELYSGVGGMHHALRESCIPAQVVAAIDVNTVANEVYKYNFPHTQLLAKTIEGI 60
Query: 268 TLEEFDRLSFNMVLMSPPCQPFTRIGLQGDVTDPRTNSFLYILDILPRLQKLPKYILLEN 447
TLEEFDRLSF+M+LMSPPCQPFTRIG QGD+TD RTNSFL+ILDILPRLQKLPKYILLEN
Sbjct: 61 TLEEFDRLSFDMILMSPPCQPFTRIGRQGDMTDSRTNSFLHILDILPRLQKLPKYILLEN 120
Query: 448 VKGFEVSSTRDLLIQTIENCGFQYQEFLLSPTSLGIPNSRLRYFLIAKLQSEPFPFQAPG 627
VKGFEVSSTRDLLIQTIENCGFQYQEFLLSPTSLGIPNSRLRYFLIAKLQSEP PFQAPG
Sbjct: 121 VKGFEVSSTRDLLIQTIENCGFQYQEFLLSPTSLGIPNSRLRYFLIAKLQSEPLPFQAPG 180
Query: 628 QVLMEFPQMESEHPQKHAIDAQSKIEEKKIERNICLDSSAQCSGKEAILFKLETAGEIDR 807
QVLMEFP++ES HPQK+A+D ++KI+EK +E NI D S QCSGK+AILFKLETA EI R
Sbjct: 181 QVLMEFPKIESVHPQKYAMDVENKIQEKNVEPNISFDGSIQCSGKDAILFKLETAEEIHR 240
Query: 808 KHQQDSDLSVPMLKGFLEDDIDMNSYFLPPKSLLPYAL 921
K+QQDSDLSV MLK FLEDD D+N Y LPPKSLL YAL
Sbjct: 241 KNQQDSDLSVKMLKDFLEDDTDVNQYLLPPKSLLRYAL 278
>ref|NP_001124295.1| DNA (cytosine-5)-methyltransferase 1 isoform a [Homo sapiens].
Length = 1632
Score = 51.2 bits (121), Expect = 1e-06
Identities = 62/260 (23%), Positives = 111/260 (42%), Gaps = 17/260 (6%)
Frame = +1
Query: 16 RGRGKMGQQDRQA*LRDDGGGGVGMEPLRVLELYSGIGGMHQALRESCIPAQVVAAIDVN 195
+G+GK G+ QA + + + LR L+++SG GG+ + ++ I + + AI++
Sbjct: 1129 KGKGK-GKPKSQACEPSEPEIEIKLPKLRTLDVFSGCGGLSEGFHQAGI-SDTLWAIEMW 1186
Query: 196 TVANEVYKYNFPHTQ--------LLAKTIEGVTLEEF-----DRLSFNMVLMSPPCQPFT 336
A + ++ N P + LL + G T + M+ PPCQ F+
Sbjct: 1187 DPAAQAFRLNNPGSTVFTEDCNILLKLVMAGETTNSRGQRLPQKGDVEMLCGGPPCQGFS 1246
Query: 337 RIGLQGDVTDPRTNSFLYILDILPRLQKLPKYILLENVKGFEVSSTRDLLIQTIENC--- 507
+ T + + L + + P++ LLENV+ F VS R ++++ C
Sbjct: 1247 GMNRFNSRTYSKFKNSLVVSFLSYCDYYRPRFFLLENVRNF-VSFKRSMVLKLTLRCLVR 1305
Query: 508 -GFQYQEFLLSPTSLGIPNSRLRYFLIAKLQSEPFPFQAPGQVLMEFPQMESEHPQKHAI 684
G+Q +L G+ +R R ++A APG+ L FP+ + A
Sbjct: 1306 MGYQCTFGVLQAGQYGVAQTRRRAIILA---------AAPGEKLPLFPEPLHVFAPR-AC 1355
Query: 685 DAQSKIEEKKIERNICLDSS 744
+++KK NI SS
Sbjct: 1356 QLSVVVDDKKFVSNITRLSS 1375
>ref|NP_001370.1| DNA (cytosine-5)-methyltransferase 1 isoform b [Homo sapiens].
Length = 1616
Score = 51.2 bits (121), Expect = 1e-06
Identities = 62/260 (23%), Positives = 111/260 (42%), Gaps = 17/260 (6%)
Frame = +1
Query: 16 RGRGKMGQQDRQA*LRDDGGGGVGMEPLRVLELYSGIGGMHQALRESCIPAQVVAAIDVN 195
+G+GK G+ QA + + + LR L+++SG GG+ + ++ I + + AI++
Sbjct: 1113 KGKGK-GKPKSQACEPSEPEIEIKLPKLRTLDVFSGCGGLSEGFHQAGI-SDTLWAIEMW 1170
Query: 196 TVANEVYKYNFPHTQ--------LLAKTIEGVTLEEF-----DRLSFNMVLMSPPCQPFT 336
A + ++ N P + LL + G T + M+ PPCQ F+
Sbjct: 1171 DPAAQAFRLNNPGSTVFTEDCNILLKLVMAGETTNSRGQRLPQKGDVEMLCGGPPCQGFS 1230
Query: 337 RIGLQGDVTDPRTNSFLYILDILPRLQKLPKYILLENVKGFEVSSTRDLLIQTIENC--- 507
+ T + + L + + P++ LLENV+ F VS R ++++ C
Sbjct: 1231 GMNRFNSRTYSKFKNSLVVSFLSYCDYYRPRFFLLENVRNF-VSFKRSMVLKLTLRCLVR 1289
Query: 508 -GFQYQEFLLSPTSLGIPNSRLRYFLIAKLQSEPFPFQAPGQVLMEFPQMESEHPQKHAI 684
G+Q +L G+ +R R ++A APG+ L FP+ + A
Sbjct: 1290 MGYQCTFGVLQAGQYGVAQTRRRAIILA---------AAPGEKLPLFPEPLHVFAPR-AC 1339
Query: 685 DAQSKIEEKKIERNICLDSS 744
+++KK NI SS
Sbjct: 1340 QLSVVVDDKKFVSNITRLSS 1359
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 33,097,915
Number of extensions: 801688
Number of successful extensions: 2003
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 2001
Number of HSP's successfully gapped: 3
Length of query: 307
Length of database: 18,297,164
Length adjustment: 102
Effective length of query: 205
Effective length of database: 14,934,836
Effective search space: 3061641380
Effective search space used: 3061641380
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-004153
(922 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_034197.3| tRNA (cytosine(38)-C(5))-methyltransferase [Mus... 432 e-121
Alignment gi|NP_001186362.1| DNA (cytosine-5)-methyltransferase 1 isoform... 54 1e-07
Alignment gi|NP_001186361.1| DNA (cytosine-5)-methyltransferase 1 isoform... 54 1e-07
Alignment gi|NP_034196.5| DNA (cytosine-5)-methyltransferase 1 isoform 2 ... 54 1e-07
Alignment gi|NP_001186360.2| DNA (cytosine-5)-methyltransferase 1 isoform... 54 1e-07
>ref|NP_034197.3| tRNA (cytosine(38)-C(5))-methyltransferase [Mus musculus].
Length = 415
Score = 432 bits (1111), Expect = e-121
Identities = 221/279 (79%), Positives = 244/279 (87%), Gaps = 1/279 (0%)
Frame = +1
Query: 88 MEPLRVLELYSGIGGMHQALRESCIPAQVVAAIDVNTVANEVYKYNFPHTQLLAKTIEGV 267
MEPLRVLELYSGIGGMH ALRES IPA VVAAIDVNTVANEVYK+NFPHT LL+KTIEG+
Sbjct: 1 MEPLRVLELYSGIGGMHHALRESHIPAHVVAAIDVNTVANEVYKHNFPHTHLLSKTIEGI 60
Query: 268 TLEEFDRLSFNMVLMSPPCQPFTRIGLQGDVTDPRTNSFLYILDILPRLQKLPKYILLEN 447
+LE+FD+LSFNM+LMSPPCQPFTRIGLQGD+TDPRT SFLYILDILPRLQKLPKYILLEN
Sbjct: 61 SLEDFDKLSFNMILMSPPCQPFTRIGLQGDMTDPRTTSFLYILDILPRLQKLPKYILLEN 120
Query: 448 VKGFEVSSTRDLLIQTIENCGFQYQEFLLSPTSLGIPNSRLRYFLIAKLQSEPFPFQAPG 627
VKGFEVSSTR LLIQTIE CGFQYQEFLLSP+SLGIPNSRLRYFLIAKLQSEPFPFQAPG
Sbjct: 121 VKGFEVSSTRGLLIQTIEACGFQYQEFLLSPSSLGIPNSRLRYFLIAKLQSEPFPFQAPG 180
Query: 628 QVLMEFPQMESEHPQKHAIDAQSKIEEKKIERNICLDSSA-QCSGKEAILFKLETAGEID 804
Q+LMEFP++ + PQK+A+ +S+ ++ IC +SS+ Q SGK+ ILFKLET E D
Sbjct: 181 QILMEFPKIVTVEPQKYAVVEESQPRVQRTGPRICAESSSTQSSGKDTILFKLETVEERD 240
Query: 805 RKHQQDSDLSVPMLKGFLEDDIDMNSYFLPPKSLLPYAL 921
RKHQQDSDLSV MLK FLED D + Y LPPK LL YAL
Sbjct: 241 RKHQQDSDLSVQMLKDFLEDG-DTDEYLLPPKLLLRYAL 278
>ref|NP_001186362.1| DNA (cytosine-5)-methyltransferase 1 isoform 4 [Mus musculus].
Length = 1502
Score = 54.3 bits (129), Expect = 1e-07
Identities = 65/260 (25%), Positives = 113/260 (43%), Gaps = 17/260 (6%)
Frame = +1
Query: 16 RGRGKMGQQDRQA*LRDDGGGGVGMEPLRVLELYSGIGGMHQALRESCIPAQVVAAIDVN 195
+G+GK G+ Q + + + LR L+++SG GG+ + ++ I ++ + AI++
Sbjct: 998 KGKGK-GKGKHQVSEPKEPEAAIKLPKLRTLDVFSGCGGLSEGFHQAGI-SETLWAIEMW 1055
Query: 196 TVANEVYKYNFPHTQ--------LLAKTIEG-VTLEEFDRL----SFNMVLMSPPCQPFT 336
A + ++ N P T LL + G VT RL M+ PPCQ F+
Sbjct: 1056 DPAAQAFRLNNPGTTVFTEDCNVLLKLVMAGEVTNSLGQRLPQKGDVEMLCGGPPCQGFS 1115
Query: 337 RIGLQGDVTDPRTNSFLYILDILPRLQKLPKYILLENVKGFEVSSTRDLLIQTIENC--- 507
+ T + + L + + P++ LLENV+ F VS R ++++ C
Sbjct: 1116 GMNRFNSRTYSKFKNSLVVSFLSYCDYYRPRFFLLENVRNF-VSYRRSMVLKLTLRCLVR 1174
Query: 508 -GFQYQEFLLSPTSLGIPNSRLRYFLIAKLQSEPFPFQAPGQVLMEFPQMESEHPQKHAI 684
G+Q +L G+ +R R ++A APG+ L FP+ + A
Sbjct: 1175 MGYQCTFGVLQAGQYGVAQTRRRAIILA---------AAPGEKLPLFPEPLHVFAPR-AC 1224
Query: 685 DAQSKIEEKKIERNICLDSS 744
+++KK NI SS
Sbjct: 1225 QLSVVVDDKKFVSNITRLSS 1244
>ref|NP_001186361.1| DNA (cytosine-5)-methyltransferase 1 isoform 3 [Mus musculus].
Length = 1501
Score = 54.3 bits (129), Expect = 1e-07
Identities = 65/260 (25%), Positives = 113/260 (43%), Gaps = 17/260 (6%)
Frame = +1
Query: 16 RGRGKMGQQDRQA*LRDDGGGGVGMEPLRVLELYSGIGGMHQALRESCIPAQVVAAIDVN 195
+G+GK G+ Q + + + LR L+++SG GG+ + ++ I ++ + AI++
Sbjct: 997 KGKGK-GKGKHQVSEPKEPEAAIKLPKLRTLDVFSGCGGLSEGFHQAGI-SETLWAIEMW 1054
Query: 196 TVANEVYKYNFPHTQ--------LLAKTIEG-VTLEEFDRL----SFNMVLMSPPCQPFT 336
A + ++ N P T LL + G VT RL M+ PPCQ F+
Sbjct: 1055 DPAAQAFRLNNPGTTVFTEDCNVLLKLVMAGEVTNSLGQRLPQKGDVEMLCGGPPCQGFS 1114
Query: 337 RIGLQGDVTDPRTNSFLYILDILPRLQKLPKYILLENVKGFEVSSTRDLLIQTIENC--- 507
+ T + + L + + P++ LLENV+ F VS R ++++ C
Sbjct: 1115 GMNRFNSRTYSKFKNSLVVSFLSYCDYYRPRFFLLENVRNF-VSYRRSMVLKLTLRCLVR 1173
Query: 508 -GFQYQEFLLSPTSLGIPNSRLRYFLIAKLQSEPFPFQAPGQVLMEFPQMESEHPQKHAI 684
G+Q +L G+ +R R ++A APG+ L FP+ + A
Sbjct: 1174 MGYQCTFGVLQAGQYGVAQTRRRAIILA---------AAPGEKLPLFPEPLHVFAPR-AC 1223
Query: 685 DAQSKIEEKKIERNICLDSS 744
+++KK NI SS
Sbjct: 1224 QLSVVVDDKKFVSNITRLSS 1243
>ref|NP_034196.5| DNA (cytosine-5)-methyltransferase 1 isoform 2 [Mus musculus].
Length = 1619
Score = 54.3 bits (129), Expect = 1e-07
Identities = 65/260 (25%), Positives = 113/260 (43%), Gaps = 17/260 (6%)
Frame = +1
Query: 16 RGRGKMGQQDRQA*LRDDGGGGVGMEPLRVLELYSGIGGMHQALRESCIPAQVVAAIDVN 195
+G+GK G+ Q + + + LR L+++SG GG+ + ++ I ++ + AI++
Sbjct: 1115 KGKGK-GKGKHQVSEPKEPEAAIKLPKLRTLDVFSGCGGLSEGFHQAGI-SETLWAIEMW 1172
Query: 196 TVANEVYKYNFPHTQ--------LLAKTIEG-VTLEEFDRL----SFNMVLMSPPCQPFT 336
A + ++ N P T LL + G VT RL M+ PPCQ F+
Sbjct: 1173 DPAAQAFRLNNPGTTVFTEDCNVLLKLVMAGEVTNSLGQRLPQKGDVEMLCGGPPCQGFS 1232
Query: 337 RIGLQGDVTDPRTNSFLYILDILPRLQKLPKYILLENVKGFEVSSTRDLLIQTIENC--- 507
+ T + + L + + P++ LLENV+ F VS R ++++ C
Sbjct: 1233 GMNRFNSRTYSKFKNSLVVSFLSYCDYYRPRFFLLENVRNF-VSYRRSMVLKLTLRCLVR 1291
Query: 508 -GFQYQEFLLSPTSLGIPNSRLRYFLIAKLQSEPFPFQAPGQVLMEFPQMESEHPQKHAI 684
G+Q +L G+ +R R ++A APG+ L FP+ + A
Sbjct: 1292 MGYQCTFGVLQAGQYGVAQTRRRAIILA---------AAPGEKLPLFPEPLHVFAPR-AC 1341
Query: 685 DAQSKIEEKKIERNICLDSS 744
+++KK NI SS
Sbjct: 1342 QLSVVVDDKKFVSNITRLSS 1361
>ref|NP_001186360.2| DNA (cytosine-5)-methyltransferase 1 isoform 1 [Mus musculus].
Length = 1620
Score = 54.3 bits (129), Expect = 1e-07
Identities = 65/260 (25%), Positives = 113/260 (43%), Gaps = 17/260 (6%)
Frame = +1
Query: 16 RGRGKMGQQDRQA*LRDDGGGGVGMEPLRVLELYSGIGGMHQALRESCIPAQVVAAIDVN 195
+G+GK G+ Q + + + LR L+++SG GG+ + ++ I ++ + AI++
Sbjct: 1116 KGKGK-GKGKHQVSEPKEPEAAIKLPKLRTLDVFSGCGGLSEGFHQAGI-SETLWAIEMW 1173
Query: 196 TVANEVYKYNFPHTQ--------LLAKTIEG-VTLEEFDRL----SFNMVLMSPPCQPFT 336
A + ++ N P T LL + G VT RL M+ PPCQ F+
Sbjct: 1174 DPAAQAFRLNNPGTTVFTEDCNVLLKLVMAGEVTNSLGQRLPQKGDVEMLCGGPPCQGFS 1233
Query: 337 RIGLQGDVTDPRTNSFLYILDILPRLQKLPKYILLENVKGFEVSSTRDLLIQTIENC--- 507
+ T + + L + + P++ LLENV+ F VS R ++++ C
Sbjct: 1234 GMNRFNSRTYSKFKNSLVVSFLSYCDYYRPRFFLLENVRNF-VSYRRSMVLKLTLRCLVR 1292
Query: 508 -GFQYQEFLLSPTSLGIPNSRLRYFLIAKLQSEPFPFQAPGQVLMEFPQMESEHPQKHAI 684
G+Q +L G+ +R R ++A APG+ L FP+ + A
Sbjct: 1293 MGYQCTFGVLQAGQYGVAQTRRRAIILA---------AAPGEKLPLFPEPLHVFAPR-AC 1342
Query: 685 DAQSKIEEKKIERNICLDSS 744
+++KK NI SS
Sbjct: 1343 QLSVVVDDKKFVSNITRLSS 1362
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 28,294,570
Number of extensions: 683446
Number of successful extensions: 1801
Number of sequences better than 1.0e-05: 5
Number of HSP's gapped: 1795
Number of HSP's successfully gapped: 5
Length of query: 307
Length of database: 15,617,559
Length adjustment: 101
Effective length of query: 206
Effective length of database: 12,583,923
Effective search space: 2592288138
Effective search space used: 2592288138
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-004153
(922 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001156357.1| tRNA (cytosine-5-)-methyltransferase [Sus sc... 550 e-157
Alignment gi|NP_001027526.1| DNA (cytosine-5)-methyltransferase 1 [Sus sc... 50 1e-06
>ref|NP_001156357.1| tRNA (cytosine-5-)-methyltransferase [Sus scrofa].
Length = 408
Score = 550 bits (1416), Expect = e-157
Identities = 276/278 (99%), Positives = 276/278 (99%)
Frame = +1
Query: 88 MEPLRVLELYSGIGGMHQALRESCIPAQVVAAIDVNTVANEVYKYNFPHTQLLAKTIEGV 267
MEPLRVLELYSGIGGMHQALRESCIPAQVVAAIDVNTVANEVYKYNFPHTQLLAKTIEGV
Sbjct: 1 MEPLRVLELYSGIGGMHQALRESCIPAQVVAAIDVNTVANEVYKYNFPHTQLLAKTIEGV 60
Query: 268 TLEEFDRLSFNMVLMSPPCQPFTRIGLQGDVTDPRTNSFLYILDILPRLQKLPKYILLEN 447
TLEEFDRLSFNMVLMSPPCQPFTRIGLQGDVTDPRTNSFLYILDILPRLQKLPKYILLEN
Sbjct: 61 TLEEFDRLSFNMVLMSPPCQPFTRIGLQGDVTDPRTNSFLYILDILPRLQKLPKYILLEN 120
Query: 448 VKGFEVSSTRDLLIQTIENCGFQYQEFLLSPTSLGIPNSRLRYFLIAKLQSEPFPFQAPG 627
VKGFEVSSTRDLLIQTIENCGFQYQEFLLSPTSLGIPNSRLRYFLIAKLQSEPFPFQAPG
Sbjct: 121 VKGFEVSSTRDLLIQTIENCGFQYQEFLLSPTSLGIPNSRLRYFLIAKLQSEPFPFQAPG 180
Query: 628 QVLMEFPQMESEHPQKHAIDAQSKIEEKKIERNICLDSSAQCSGKEAILFKLETAGEIDR 807
QVLMEFPQMESEHPQKHAIDAQSKIEEKKIERNICLDSSAQCSGKEAILFKLETAGEIDR
Sbjct: 181 QVLMEFPQMESEHPQKHAIDAQSKIEEKKIERNICLDSSAQCSGKEAILFKLETAGEIDR 240
Query: 808 KHQQDSDLSVPMLKGFLEDDIDMNSYFLPPKSLLPYAL 921
KHQQDSDLSV MLKGFLEDDIDMNSYFLPPKSLL YAL
Sbjct: 241 KHQQDSDLSVQMLKGFLEDDIDMNSYFLPPKSLLRYAL 278
>ref|NP_001027526.1| DNA (cytosine-5)-methyltransferase 1 [Sus scrofa].
Length = 1610
Score = 50.4 bits (119), Expect = 1e-06
Identities = 52/207 (25%), Positives = 92/207 (44%), Gaps = 17/207 (8%)
Frame = +1
Query: 82 VGMEPLRVLELYSGIGGMHQALRESCIPAQVVAAIDVNTVANEVYKYNFPHTQ------- 240
+ + LR L+++SG GG+ + ++ I ++ + AI++ A ++ N P +
Sbjct: 1130 IKLPKLRTLDVFSGCGGLSEGFHQAGI-SETLWAIEMWDPAAHAFRLNNPGSTVFTEDCN 1188
Query: 241 -LLAKTIEG-VTLEEFDRL----SFNMVLMSPPCQPFTRIGLQGDVTDPRTNSFLYILDI 402
LL + G VT +L M+ PPCQ F+ + T + + L + +
Sbjct: 1189 VLLKLVMAGEVTNSRGQKLPQKGDVEMLCGGPPCQGFSGMNRFNSRTYSKFKNSLVVSFL 1248
Query: 403 LPRLQKLPKYILLENVKGFEVSSTRDLLIQTIENC----GFQYQEFLLSPTSLGIPNSRL 570
P+Y LLENV+ F VS R ++++ C G+Q +L G+ +R
Sbjct: 1249 SYCDYYRPRYFLLENVRNF-VSFKRSMVLKLTLRCLVRMGYQCTFGVLQAGQYGVAQTRR 1307
Query: 571 RYFLIAKLQSEPFPFQAPGQVLMEFPQ 651
R ++A APG+ L FP+
Sbjct: 1308 RAIILA---------AAPGEQLPLFPE 1325
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 20,643,990
Number of extensions: 493777
Number of successful extensions: 1273
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 1272
Number of HSP's successfully gapped: 2
Length of query: 307
Length of database: 11,343,932
Length adjustment: 99
Effective length of query: 208
Effective length of database: 8,879,129
Effective search space: 1846858832
Effective search space used: 1846858832
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 33 (17.3 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-004153
(922 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|GL894963.1| Sus scrofa unplaced genomic scaffold chrU_scaffol... 567 e-159
Sscrofa_Chr10 299 1e-78
Sscrofa_Chr09 86 4e-14
>gb|GL894963.1| Sus scrofa unplaced genomic scaffold chrU_scaffold3576
Length = 11253
Score = 567 bits (286), Expect = e-159
Identities = 292/294 (99%)
Strand = Plus / Minus
Query: 629 aggtgctaatggagttcccccaaatggaatctgaacatccacaaaaacacgcaatagatg 688
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2966 aggtgctaatggagttcccccaaatggaatctgaacatccacaaaaacacgcaatagatg 2907
Query: 689 cacaaagtaaaatcgaagaaaagaaaattgaacgaaatatttgcttggatagcagtgcac 748
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2906 cacaaagtaaaatcgaagaaaagaaaattgaacgaaatatttgcttggatagcagtgcac 2847
Query: 749 aatgttctggaaaagaggccattcttttcaagcttgaaactgcaggagaaattgacagga 808
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2846 aatgttctggaaaagaggccattcttttcaagcttgaaactgcaggagaaattgacagga 2787
Query: 809 aacatcaacaggacagtgatctctctgtgccaatgctaaaaggttttcttgaagatgaca 868
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 2786 aacatcaacaggacagtgatctctctgtgcaaatgctaaaaggttttcttgaagatgaca 2727
Query: 869 ttgacatgaactcgtactttttaccgccaaagtcgttgctcccatatgctcttt 922
|||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 2726 ttgacatgaactcgtactttttaccgccaaagtcgttgctccgatatgctcttt 2673
Score = 170 bits (86), Expect = 9e-40
Identities = 86/86 (100%)
Strand = Plus / Minus
Query: 547 cttggcattccaaattcaaggctacggtatttcctcattgcaaagcttcagtcagagcca 606
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4980 cttggcattccaaattcaaggctacggtatttcctcattgcaaagcttcagtcagagcca 4921
Query: 607 ttcccttttcaagcccctggtcaggt 632
||||||||||||||||||||||||||
Sbjct: 4920 ttcccttttcaagcccctggtcaggt 4895
Score = 153 bits (77), Expect = 2e-34
Identities = 77/77 (100%)
Strand = Plus / Minus
Query: 262 ggtgttacactagaagaatttgacagattatctttcaatatggttttaatgagccctccc 321
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8025 ggtgttacactagaagaatttgacagattatctttcaatatggttttaatgagccctccc 7966
Query: 322 tgtcagccatttacaag 338
|||||||||||||||||
Sbjct: 7965 tgtcagccatttacaag 7949
Score = 147 bits (74), Expect = 1e-32
Identities = 74/74 (100%)
Strand = Plus / Minus
Query: 337 agaattggcctgcaaggtgatgtgacggatccgaggacaaatagcttcttatatattcta 396
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7157 agaattggcctgcaaggtgatgtgacggatccgaggacaaatagcttcttatatattcta 7098
Query: 397 gacattctcccaag 410
||||||||||||||
Sbjct: 7097 gacattctcccaag 7084
Score = 143 bits (72), Expect = 2e-31
Identities = 72/72 (100%)
Strand = Plus / Minus
Query: 475 agagacctattaatacaaacaatagaaaattgtggctttcagtaccaagaatttctcttg 534
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5525 agagacctattaatacaaacaatagaaaattgtggctttcagtaccaagaatttctcttg 5466
Query: 535 tctccaacctct 546
||||||||||||
Sbjct: 5465 tctccaacctct 5454
Score = 135 bits (68), Expect = 5e-29
Identities = 68/68 (100%)
Strand = Plus / Minus
Query: 409 agattgcaaaaattaccaaagtatattcttctagaaaatgttaaaggttttgaagtatct 468
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6456 agattgcaaaaattaccaaagtatattcttctagaaaatgttaaaggttttgaagtatct 6397
Query: 469 tcaacaag 476
||||||||
Sbjct: 6396 tcaacaag 6389
>Sscrofa_Chr10
|| Length = 79102373
Score = 299 bits (151), Expect = 1e-78
Identities = 151/151 (100%)
Strand = Plus / Plus
Query: 1 gacgcgagggagcagcgcggccgggggaagatggggcaacaggaccggcaggcctagctc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 48123517 gacgcgagggagcagcgcggccgggggaagatggggcaacaggaccggcaggcctagctc 48123576
Query: 61 cgcgacgacggcggcggcggcgtgggaatggagcccctgcgggtcctggagctgtacagc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 48123577 cgcgacgacggcggcggcggcgtgggaatggagcccctgcgggtcctggagctgtacagc 48123636
Query: 121 ggcattgggggcatgcaccaggcgctgagag 151
|||||||||||||||||||||||||||||||
Sbjct: 48123637 ggcattgggggcatgcaccaggcgctgagag 48123667
>Sscrofa_Chr09
|| Length = 153670197
Score = 85.7 bits (43), Expect = 4e-14
Identities = 64/71 (90%)
Strand = Plus / Minus
Query: 83 tgggaatggagcccctgcgggtcctggagctgtacagcggcattgggggcatgcaccagg 142
|||||||||||||| ||| ||||||||| | ||||||| ||| |||||||||||||||||
Sbjct: 84789523 tgggaatggagcccttgcaggtcctggatccgtacagcagcactgggggcatgcaccagg 84789464
Query: 143 cgctgagagaa 153
| |||||||||
Sbjct: 84789463 cactgagagaa 84789453
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 30,898,752
Number of extensions: 291
Number of successful extensions: 291
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 291
Number of HSP's successfully gapped: 8
Length of query: 922
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 901
Effective length of database: 2,808,413,156
Effective search space: 2530380253556
Effective search space used: 2530380253556
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 29 (58.0 bits)