Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-004155
(1407 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001106716.1| TRAF3 interacting protein 3 isoform 1 [Bos t... 545 e-155
Alignment gi|NP_001019647.2| TRAF3 interacting protein 3 isoform 2 [Bos t... 545 e-155
Alignment gi|XP_002697041.1| PREDICTED: sarcolemma associated protein [Bo... 139 5e-33
Alignment gi|XP_001788179.1| PREDICTED: sarcolemma associated protein [Bo... 139 5e-33
Alignment gi|NP_001179208.1| coiled-coil domain-containing protein 88B [B... 54 4e-07
Alignment gi|XP_002699376.1| PREDICTED: coiled-coil domain containing 88B... 54 4e-07
Alignment gi|XP_002694493.1| PREDICTED: hypothetical protein [Bos taurus]. 52 1e-06
Alignment gi|XP_613058.3| PREDICTED: hypothetical protein [Bos taurus]. 52 1e-06
Alignment gi|NP_001192348.1| ELKS/Rab6-interacting/CAST family member 1 [... 51 3e-06
Alignment gi|XP_002687954.1| PREDICTED: ELKS/RAB6-interacting/CAST family... 51 3e-06
>ref|NP_001106716.1| TRAF3 interacting protein 3 isoform 1 [Bos taurus].
Length = 554
Score = 545 bits (1405), Expect = e-155
Identities = 291/387 (75%), Positives = 305/387 (78%), Gaps = 17/387 (4%)
Frame = +3
Query: 285 MLSPDPRPAPGLARWAESYEAKCXXXXXXXXXXXXXPNVTTCRQVGKALRTXXXXXXXXX 464
M+ PDPRPAPGLARWAESYEAK PNVTTCR VGKA RT
Sbjct: 1 MIGPDPRPAPGLARWAESYEAKSERRQETRESRRCRPNVTTCRLVGKAPRTQQREQLRRA 60
Query: 465 XXXXXXXLRHLEVEEKGQAERSQTRQPGSSR-AGQAPDLKEPWPWANRISSPGQQVSGTS 641
R+LEVEEKG+A+ R+PG SR GQA DLKEP WANRISSP QQVSGTS
Sbjct: 61 RQQQFFRRRNLEVEEKGEAQSPPAREPGPSRRTGQATDLKEPLSWANRISSPRQQVSGTS 120
Query: 642 AEVFPAQRHPPSGARRDSA----------------VQKLPKQHRGTQTKAEETQPTTKND 773
EVF Q HPPSGA RD A +K PK HRGTQTKA ETQ T KND
Sbjct: 121 CEVFATQHHPPSGAWRDPAGHCPTQAGGLPPQASPTKKAPKHHRGTQTKAGETQSTIKND 180
Query: 774 ASQQTNYGVAVLDKEIIQLSEYLKEALHRELVLKQKMVILQDLLSTLIQASDSSWKGQLN 953
ASQQTNYGVAVLDKEIIQLSEYLKEAL REL+LKQKMVILQDLLSTLIQASDS+WKGQLN
Sbjct: 181 ASQQTNYGVAVLDKEIIQLSEYLKEALQRELILKQKMVILQDLLSTLIQASDSTWKGQLN 240
Query: 954 EDKLKGKLRSLENQLYTCTQNYSPRGMKKVILEMEDQKHSYEQKAKESLQKVLEEKMSAE 1133
EDKLKGKLRSLENQLY CTQ YSP GMKKV+LEMEDQK+SYEQKAKESLQKVLEEKMSAE
Sbjct: 241 EDKLKGKLRSLENQLYACTQKYSPWGMKKVLLEMEDQKNSYEQKAKESLQKVLEEKMSAE 300
Query: 1134 QQLQSTQRSLALAEQKCEEWRSQYEALKEDWRTLGTQHRELESQLHVLQSKLQGADSRDL 1313
QQLQSTQRSLALAEQKCEEW+SQYEALKEDWRTLGTQHRELESQLHVLQSKLQGADSRD
Sbjct: 301 QQLQSTQRSLALAEQKCEEWKSQYEALKEDWRTLGTQHRELESQLHVLQSKLQGADSRDS 360
Query: 1314 QMNQALRLLENEHQELQGKIARLQGDK 1394
QMNQALRLLE+EHQELQ +I LQ D+
Sbjct: 361 QMNQALRLLESEHQELQARIECLQEDR 387
>ref|NP_001019647.2| TRAF3 interacting protein 3 isoform 2 [Bos taurus].
Length = 448
Score = 545 bits (1405), Expect = e-155
Identities = 291/387 (75%), Positives = 305/387 (78%), Gaps = 17/387 (4%)
Frame = +3
Query: 285 MLSPDPRPAPGLARWAESYEAKCXXXXXXXXXXXXXPNVTTCRQVGKALRTXXXXXXXXX 464
M+ PDPRPAPGLARWAESYEAK PNVTTCR VGKA RT
Sbjct: 1 MIGPDPRPAPGLARWAESYEAKSERRQETRESRRCRPNVTTCRLVGKAPRTQQREQLRRA 60
Query: 465 XXXXXXXLRHLEVEEKGQAERSQTRQPGSSR-AGQAPDLKEPWPWANRISSPGQQVSGTS 641
R+LEVEEKG+A+ R+PG SR GQA DLKEP WANRISSP QQVSGTS
Sbjct: 61 RQQQFFRRRNLEVEEKGEAQSPPAREPGPSRRTGQATDLKEPLSWANRISSPRQQVSGTS 120
Query: 642 AEVFPAQRHPPSGARRDSA----------------VQKLPKQHRGTQTKAEETQPTTKND 773
EVF Q HPPSGA RD A +K PK HRGTQTKA ETQ T KND
Sbjct: 121 CEVFATQHHPPSGAWRDPAGHCPTQAGGLPPQASPTKKAPKHHRGTQTKAGETQSTIKND 180
Query: 774 ASQQTNYGVAVLDKEIIQLSEYLKEALHRELVLKQKMVILQDLLSTLIQASDSSWKGQLN 953
ASQQTNYGVAVLDKEIIQLSEYLKEAL REL+LKQKMVILQDLLSTLIQASDS+WKGQLN
Sbjct: 181 ASQQTNYGVAVLDKEIIQLSEYLKEALQRELILKQKMVILQDLLSTLIQASDSTWKGQLN 240
Query: 954 EDKLKGKLRSLENQLYTCTQNYSPRGMKKVILEMEDQKHSYEQKAKESLQKVLEEKMSAE 1133
EDKLKGKLRSLENQLY CTQ YSP GMKKV+LEMEDQK+SYEQKAKESLQKVLEEKMSAE
Sbjct: 241 EDKLKGKLRSLENQLYACTQKYSPWGMKKVLLEMEDQKNSYEQKAKESLQKVLEEKMSAE 300
Query: 1134 QQLQSTQRSLALAEQKCEEWRSQYEALKEDWRTLGTQHRELESQLHVLQSKLQGADSRDL 1313
QQLQSTQRSLALAEQKCEEW+SQYEALKEDWRTLGTQHRELESQLHVLQSKLQGADSRD
Sbjct: 301 QQLQSTQRSLALAEQKCEEWKSQYEALKEDWRTLGTQHRELESQLHVLQSKLQGADSRDS 360
Query: 1314 QMNQALRLLENEHQELQGKIARLQGDK 1394
QMNQALRLLE+EHQELQ +I LQ D+
Sbjct: 361 QMNQALRLLESEHQELQARIECLQEDR 387
>ref|XP_002697041.1| PREDICTED: sarcolemma associated protein [Bos taurus].
Length = 811
Score = 139 bits (351), Expect = 5e-33
Identities = 72/208 (34%), Positives = 126/208 (60%), Gaps = 11/208 (5%)
Frame = +3
Query: 801 AVLDKEIIQLSEYLKEALHRELVLKQKMVILQDLLSTLIQASDSSWKGQLNEDKLKGKLR 980
++ +E+ QLS+YL+EALHRE +L+QK+ LQ LL+ +ASD+SW+ ++ED+L +L
Sbjct: 159 SMYSQELFQLSQYLQEALHREQMLEQKLATLQRLLAITQEASDTSWQALIDEDRLLSRLE 218
Query: 981 SLENQLYTCTQNYSPRGMKKVILEMEDQKHSYEQKAKESLQKVLEEKMSAEQQLQSTQRS 1160
+ NQL C++N + ++K ++ +++ KH+YE AKESL++VL+EK+ ++L +RS
Sbjct: 219 VMGNQLQACSKNQTEDSLRKELIALQEDKHNYETTAKESLRRVLQEKIDVVRKLSEVERS 278
Query: 1161 LALAEQKCEEWRSQYEALKEDWRTLGTQHRELESQLHVLQSKLQGADSRDLQMNQ----- 1325
L+ E +C + E +E+ R L ++ +++ L KL+ A+ + ++ Q
Sbjct: 279 LSNTEDECTHLKEMNERTQEELRELANKYNGAVNEIKDLSDKLKIAEGKQEEIQQKGQAE 338
Query: 1326 ------ALRLLENEHQELQGKIARLQGD 1391
+ +E + QELQ KI LQ D
Sbjct: 339 KKELQHKIDEMEEKEQELQAKIEALQAD 366
>ref|XP_001788179.1| PREDICTED: sarcolemma associated protein [Bos taurus].
Length = 815
Score = 139 bits (351), Expect = 5e-33
Identities = 72/208 (34%), Positives = 126/208 (60%), Gaps = 11/208 (5%)
Frame = +3
Query: 801 AVLDKEIIQLSEYLKEALHRELVLKQKMVILQDLLSTLIQASDSSWKGQLNEDKLKGKLR 980
++ +E+ QLS+YL+EALHRE +L+QK+ LQ LL+ +ASD+SW+ ++ED+L +L
Sbjct: 163 SMYSQELFQLSQYLQEALHREQMLEQKLATLQRLLAITQEASDTSWQALIDEDRLLSRLE 222
Query: 981 SLENQLYTCTQNYSPRGMKKVILEMEDQKHSYEQKAKESLQKVLEEKMSAEQQLQSTQRS 1160
+ NQL C++N + ++K ++ +++ KH+YE AKESL++VL+EK+ ++L +RS
Sbjct: 223 VMGNQLQACSKNQTEDSLRKELIALQEDKHNYETTAKESLRRVLQEKIDVVRKLSEVERS 282
Query: 1161 LALAEQKCEEWRSQYEALKEDWRTLGTQHRELESQLHVLQSKLQGADSRDLQMNQ----- 1325
L+ E +C + E +E+ R L ++ +++ L KL+ A+ + ++ Q
Sbjct: 283 LSNTEDECTHLKEMNERTQEELRELANKYNGAVNEIKDLSDKLKIAEGKQEEIQQKGQAE 342
Query: 1326 ------ALRLLENEHQELQGKIARLQGD 1391
+ +E + QELQ KI LQ D
Sbjct: 343 KKELQHKIDEMEEKEQELQAKIEALQAD 370
>ref|NP_001179208.1| coiled-coil domain-containing protein 88B [Bos taurus].
Length = 1463
Score = 53.5 bits (127), Expect = 4e-07
Identities = 52/168 (30%), Positives = 78/168 (46%), Gaps = 7/168 (4%)
Frame = +3
Query: 912 LIQASDSSWKGQLNEDKLKGKLRSLENQLYTCTQNYSPRGMKKVILEMEDQKHSYEQKAK 1091
LI+ S+ + L+G+L+ LE QL S +G + +L Q+A+
Sbjct: 967 LIEVERSNATLAAEKAALQGQLQHLEGQLG------SLQGRAQELLLQS-------QRAQ 1013
Query: 1092 ESLQKVLEEKMSAEQQLQSTQRSLALAEQKC-------EEWRSQYEALKEDWRTLGTQHR 1250
E+ ++ EK E Q Q R L L E++ EE R Q +AL D L R
Sbjct: 1014 ENSSRLQAEKSVLETQGQELHRRLGLLEEEVQAARRSQEETRGQQQALLRDHEALAQLQR 1073
Query: 1251 ELESQLHVLQSKLQGADSRDLQMNQALRLLENEHQELQGKIARLQGDK 1394
E++L L ++ RDL+ N +R LE H+ELQG+ +LQ K
Sbjct: 1074 RQEAELEGLLAR-----HRDLKAN--MRALELAHRELQGRHEQLQAQK 1114
>ref|XP_002699376.1| PREDICTED: coiled-coil domain containing 88B [Bos taurus].
Length = 1463
Score = 53.5 bits (127), Expect = 4e-07
Identities = 52/168 (30%), Positives = 78/168 (46%), Gaps = 7/168 (4%)
Frame = +3
Query: 912 LIQASDSSWKGQLNEDKLKGKLRSLENQLYTCTQNYSPRGMKKVILEMEDQKHSYEQKAK 1091
LI+ S+ + L+G+L+ LE QL S +G + +L Q+A+
Sbjct: 967 LIEVERSNATLAAEKAALQGQLQHLEGQLG------SLQGRAQELLLQS-------QRAQ 1013
Query: 1092 ESLQKVLEEKMSAEQQLQSTQRSLALAEQKC-------EEWRSQYEALKEDWRTLGTQHR 1250
E+ ++ EK E Q Q R L L E++ EE R Q +AL D L R
Sbjct: 1014 ENSSRLQAEKSVLETQGQELHRRLGLLEEEVQAARRSQEETRGQQQALLRDHEALAQLQR 1073
Query: 1251 ELESQLHVLQSKLQGADSRDLQMNQALRLLENEHQELQGKIARLQGDK 1394
E++L L ++ RDL+ N +R LE H+ELQG+ +LQ K
Sbjct: 1074 RQEAELEGLLAR-----HRDLKAN--MRALELAHRELQGRHEQLQAQK 1114
>ref|XP_002694493.1| PREDICTED: hypothetical protein [Bos taurus].
Length = 1495
Score = 52.0 bits (123), Expect = 1e-06
Identities = 65/247 (26%), Positives = 105/247 (42%), Gaps = 13/247 (5%)
Frame = +3
Query: 690 DSAVQKLPKQHRGTQTKAEETQPTTKNDASQQTNYGVAVLDKEIIQLSEYLKEALHRELV 869
D Q Q + Q + E T T+K ASQ EI L +++ ++L
Sbjct: 523 DLRQQMTALQSQLQQVQLERTTLTSKLKASQA----------EIASLQS-VRQWYQQQLA 571
Query: 870 LKQKMVILQDLLSTLIQASDSSWKGQLNEDKLKGKLRSLENQLYTCTQNYSPRGMKKVIL 1049
L Q+ + IQ S G L KL+ SL +QL T TQ S + +++
Sbjct: 572 LAQEARVRLQGEMAHIQVGQMSQAGLLEHLKLENV--SLSHQL-TETQQRSIKEKERIAA 628
Query: 1050 EME-------DQKHSYEQ------KAKESLQKVLEEKMSAEQQLQSTQRSLALAEQKCEE 1190
+++ DQ+ ++ Q +E LQ+ LEE ++QLQ S A+ EQ+ E+
Sbjct: 629 QLQGIEADMLDQEAAFVQIQEAKTMVEEDLQRRLEEFEDEKEQLQKMVASAAVLEQQLEQ 688
Query: 1191 WRSQYEALKEDWRTLGTQHRELESQLHVLQSKLQGADSRDLQMNQALRLLENEHQELQGK 1370
+ + L +H +L Q Q LQ + Q+L L+ + ELQ +
Sbjct: 689 VKLTLHQRDQQLEALQQEHLDLLKQFTSTQETLQTRE-------QSLGDLQVRYDELQAR 741
Query: 1371 IARLQGD 1391
+ LQG+
Sbjct: 742 LDELQGE 748
>ref|XP_613058.3| PREDICTED: hypothetical protein [Bos taurus].
Length = 1495
Score = 52.0 bits (123), Expect = 1e-06
Identities = 65/247 (26%), Positives = 105/247 (42%), Gaps = 13/247 (5%)
Frame = +3
Query: 690 DSAVQKLPKQHRGTQTKAEETQPTTKNDASQQTNYGVAVLDKEIIQLSEYLKEALHRELV 869
D Q Q + Q + E T T+K ASQ EI L +++ ++L
Sbjct: 523 DLRQQMTALQSQLQQVQLERTTLTSKLKASQA----------EIASLQS-VRQWYQQQLA 571
Query: 870 LKQKMVILQDLLSTLIQASDSSWKGQLNEDKLKGKLRSLENQLYTCTQNYSPRGMKKVIL 1049
L Q+ + IQ S G L KL+ SL +QL T TQ S + +++
Sbjct: 572 LAQEARVRLQGEMAHIQVGQMSQAGLLEHLKLENV--SLSHQL-TETQQRSIKEKERIAA 628
Query: 1050 EME-------DQKHSYEQ------KAKESLQKVLEEKMSAEQQLQSTQRSLALAEQKCEE 1190
+++ DQ+ ++ Q +E LQ+ LEE ++QLQ S A+ EQ+ E+
Sbjct: 629 QLQGIEADMLDQEAAFVQIQEAKTMVEEDLQRRLEEFEDEKEQLQKMVASAAVLEQQLEQ 688
Query: 1191 WRSQYEALKEDWRTLGTQHRELESQLHVLQSKLQGADSRDLQMNQALRLLENEHQELQGK 1370
+ + L +H +L Q Q LQ + Q+L L+ + ELQ +
Sbjct: 689 VKLTLHQRDQQLEALQQEHLDLLKQFTSTQETLQTRE-------QSLGDLQVRYDELQAR 741
Query: 1371 IARLQGD 1391
+ LQG+
Sbjct: 742 LDELQGE 748
>ref|NP_001192348.1| ELKS/Rab6-interacting/CAST family member 1 [Bos taurus].
Length = 1116
Score = 50.8 bits (120), Expect = 3e-06
Identities = 56/214 (26%), Positives = 102/214 (47%), Gaps = 4/214 (1%)
Frame = +3
Query: 765 KNDASQQTNYGVAVLDKEIIQLSEYLKEALHRELVLKQKMV-ILQDLLSTLIQASDSSWK 941
KND ++ +A L++++ ++ + H+E V K+K +L++ SDSS +
Sbjct: 772 KNDKDKK----IAELERQVKDQNKKVASLKHKEQVEKKKSAQMLEEARRREDTLSDSSQQ 827
Query: 942 GQLNEDKLKGKLRSLENQLYTCTQNYSPRGMKKVILEMEDQKHSYEQKAKE---SLQKVL 1112
Q + K ++ LE L Q + R M V+ + E + S E++ +E +++KV
Sbjct: 828 LQDSLRKKDDRIEELEEALRESVQITAEREM--VLAQEESARTSAEKQVEELLMAMEKVK 885
Query: 1113 EEKMSAEQQLQSTQRSLALAEQKCEEWRSQYEALKEDWRTLGTQHRELESQLHVLQSKLQ 1292
+E S + +L STQ+SLA E R++ + + LE L + Q L
Sbjct: 886 QELESMKAKLSSTQQSLAEKETHLTNLRAE-------------RRKHLEEVLEMKQEALL 932
Query: 1293 GADSRDLQMNQALRLLENEHQELQGKIARLQGDK 1394
A S + N AL L + ++ Q ++A L+ +K
Sbjct: 933 AAIS-EKDANIALLELSSSKKKTQEEVAALKREK 965
>ref|XP_002687954.1| PREDICTED: ELKS/RAB6-interacting/CAST family member 1 isoform 2 [Bos
taurus].
Length = 1088
Score = 50.8 bits (120), Expect = 3e-06
Identities = 56/214 (26%), Positives = 102/214 (47%), Gaps = 4/214 (1%)
Frame = +3
Query: 765 KNDASQQTNYGVAVLDKEIIQLSEYLKEALHRELVLKQKMV-ILQDLLSTLIQASDSSWK 941
KND ++ +A L++++ ++ + H+E V K+K +L++ SDSS +
Sbjct: 744 KNDKDKK----IAELERQVKDQNKKVASLKHKEQVEKKKSAQMLEEARRREDTLSDSSQQ 799
Query: 942 GQLNEDKLKGKLRSLENQLYTCTQNYSPRGMKKVILEMEDQKHSYEQKAKE---SLQKVL 1112
Q + K ++ LE L Q + R M V+ + E + S E++ +E +++KV
Sbjct: 800 LQDSLRKKDDRIEELEEALRESVQITAEREM--VLAQEESARTSAEKQVEELLMAMEKVK 857
Query: 1113 EEKMSAEQQLQSTQRSLALAEQKCEEWRSQYEALKEDWRTLGTQHRELESQLHVLQSKLQ 1292
+E S + +L STQ+SLA E R++ + + LE L + Q L
Sbjct: 858 QELESMKAKLSSTQQSLAEKETHLTNLRAE-------------RRKHLEEVLEMKQEALL 904
Query: 1293 GADSRDLQMNQALRLLENEHQELQGKIARLQGDK 1394
A S + N AL L + ++ Q ++A L+ +K
Sbjct: 905 AAIS-EKDANIALLELSSSKKKTQEEVAALKREK 937
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 54,658,761
Number of extensions: 1719459
Number of successful extensions: 10300
Number of sequences better than 1.0e-05: 16
Number of HSP's gapped: 10138
Number of HSP's successfully gapped: 16
Length of query: 469
Length of database: 17,681,374
Length adjustment: 106
Effective length of query: 363
Effective length of database: 14,174,046
Effective search space: 5145178698
Effective search space used: 5145178698
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-004155
(1407 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_857406.1| PREDICTED: similar to TRAF3-interacting JNK-act... 545 e-155
Alignment gi|XP_537137.2| PREDICTED: similar to TRAF3-interacting JNK-act... 507 e-144
Alignment gi|XP_857663.1| PREDICTED: similar to sarcolemma associated pro... 140 4e-33
Alignment gi|XP_857626.1| PREDICTED: similar to sarcolemma associated pro... 140 4e-33
Alignment gi|XP_857589.1| PREDICTED: similar to sarcolemma associated pro... 140 4e-33
Alignment gi|XP_857549.1| PREDICTED: similar to sarcolemma associated pro... 140 4e-33
Alignment gi|XP_857509.1| PREDICTED: similar to sarcolemma associated pro... 140 4e-33
Alignment gi|XP_857467.1| PREDICTED: similar to sarcolemma associated pro... 140 4e-33
Alignment gi|XP_857342.1| PREDICTED: similar to sarcolemma associated pro... 140 4e-33
Alignment gi|XP_857302.1| PREDICTED: similar to sarcolemma associated pro... 140 4e-33
>ref|XP_857406.1| PREDICTED: similar to TRAF3-interacting JNK-activating modulator
isoform 2 [Canis familiaris].
Length = 445
Score = 545 bits (1403), Expect = e-155
Identities = 292/386 (75%), Positives = 307/386 (79%), Gaps = 16/386 (4%)
Frame = +3
Query: 285 MLSPDPRPAPGLARWAESYEAKCXXXXXXXXXXXXXPNVTTCRQVGKALRTXXXXXXXXX 464
M+SPDPRP+PGLAR AESYEAKC PNVTTCR+VGKALRT
Sbjct: 1 MISPDPRPSPGLARGAESYEAKCERRQEIRESRRCRPNVTTCRRVGKALRTQQREQLQSA 60
Query: 465 XXXXXXXLRHLEVEEKGQAERSQTRQPGSSRA-GQAPDLKEPWPWANRISSPGQQVSGTS 641
R LEVEE G+A+ + ++ G SR GQ DLKEP WANRISSP QQVSGTS
Sbjct: 61 RQREFFRRRDLEVEETGKAQSPRAKERGPSRRPGQPTDLKEPLSWANRISSPRQQVSGTS 120
Query: 642 AEVFPAQRHPPSGARRDSAVQ---------------KLPKQHRGTQTKAEETQPTTKNDA 776
+EVFP+Q H PSG RD A Q K PK HRGTQTKAE QP KNDA
Sbjct: 121 SEVFPSQHHLPSGPWRDLASQPSQAEDLSLKDYPAKKPPKHHRGTQTKAETAQPAIKNDA 180
Query: 777 SQQTNYGVAVLDKEIIQLSEYLKEALHRELVLKQKMVILQDLLSTLIQASDSSWKGQLNE 956
SQQTNYGVAVLDKEIIQLSEYLKEAL RELVLKQKMVILQDLLSTLI+ASDSSWKGQLNE
Sbjct: 181 SQQTNYGVAVLDKEIIQLSEYLKEALQRELVLKQKMVILQDLLSTLIRASDSSWKGQLNE 240
Query: 957 DKLKGKLRSLENQLYTCTQNYSPRGMKKVILEMEDQKHSYEQKAKESLQKVLEEKMSAEQ 1136
DKLKGKLRSLENQLYTCTQ YSP GMKKV+LEMEDQK+SYEQKAKESLQKVLEEKMSAEQ
Sbjct: 241 DKLKGKLRSLENQLYTCTQKYSPWGMKKVLLEMEDQKNSYEQKAKESLQKVLEEKMSAEQ 300
Query: 1137 QLQSTQRSLALAEQKCEEWRSQYEALKEDWRTLGTQHRELESQLHVLQSKLQGADSRDLQ 1316
QLQSTQRSLALAEQKCEEWRSQYEALKEDWR LGTQHRELESQLHVLQSKLQGADSRDLQ
Sbjct: 301 QLQSTQRSLALAEQKCEEWRSQYEALKEDWRKLGTQHRELESQLHVLQSKLQGADSRDLQ 360
Query: 1317 MNQALRLLENEHQELQGKIARLQGDK 1394
MNQAL+LLENEHQELQ KI LQGD+
Sbjct: 361 MNQALQLLENEHQELQAKIELLQGDR 386
>ref|XP_537137.2| PREDICTED: similar to TRAF3-interacting JNK-activating modulator
isoform 1 [Canis familiaris].
Length = 530
Score = 507 bits (1306), Expect = e-144
Identities = 278/385 (72%), Positives = 293/385 (76%), Gaps = 15/385 (3%)
Frame = +3
Query: 285 MLSPDPRPAPGLARWAESYEAKCXXXXXXXXXXXXXPNVTTCRQVGKALRTXXXXXXXXX 464
M+SPDPRP+PGLAR AESYEAKC PNVTTCR+VGKALRT
Sbjct: 1 MISPDPRPSPGLARGAESYEAKCERRQEIRESRRCRPNVTTCRRVGKALRTQQREQLQSA 60
Query: 465 XXXXXXXLRHLEVEEKGQAERSQTRQPGSSRAGQAPDLKEPWPWANRISSPGQQVSGTSA 644
R LEVEE G+A+ + ++ G SR PGQ VSGTS+
Sbjct: 61 RQREFFRRRDLEVEETGKAQSPRAKERGPSRR------------------PGQ-VSGTSS 101
Query: 645 EVFPAQRHPPSGARRDSAVQ---------------KLPKQHRGTQTKAEETQPTTKNDAS 779
EVFP+Q H PSG RD A Q K PK HRGTQTKAE QP KNDAS
Sbjct: 102 EVFPSQHHLPSGPWRDLASQPSQAEDLSLKDYPAKKPPKHHRGTQTKAETAQPAIKNDAS 161
Query: 780 QQTNYGVAVLDKEIIQLSEYLKEALHRELVLKQKMVILQDLLSTLIQASDSSWKGQLNED 959
QQTNYGVAVLDKEIIQLSEYLKEAL RELVLKQKMVILQDLLSTLI+ASDSSWKGQLNED
Sbjct: 162 QQTNYGVAVLDKEIIQLSEYLKEALQRELVLKQKMVILQDLLSTLIRASDSSWKGQLNED 221
Query: 960 KLKGKLRSLENQLYTCTQNYSPRGMKKVILEMEDQKHSYEQKAKESLQKVLEEKMSAEQQ 1139
KLKGKLRSLENQLYTCTQ YSP GMKKV+LEMEDQK+SYEQKAKESLQKVLEEKMSAEQQ
Sbjct: 222 KLKGKLRSLENQLYTCTQKYSPWGMKKVLLEMEDQKNSYEQKAKESLQKVLEEKMSAEQQ 281
Query: 1140 LQSTQRSLALAEQKCEEWRSQYEALKEDWRTLGTQHRELESQLHVLQSKLQGADSRDLQM 1319
LQSTQRSLALAEQKCEEWRSQYEALKEDWR LGTQHRELESQLHVLQSKLQGADSRDLQM
Sbjct: 282 LQSTQRSLALAEQKCEEWRSQYEALKEDWRKLGTQHRELESQLHVLQSKLQGADSRDLQM 341
Query: 1320 NQALRLLENEHQELQGKIARLQGDK 1394
NQAL+LLENEHQELQ KI LQGD+
Sbjct: 342 NQALQLLENEHQELQAKIELLQGDR 366
>ref|XP_857663.1| PREDICTED: similar to sarcolemma associated protein isoform 17 [Canis
familiaris].
Length = 672
Score = 140 bits (352), Expect = 4e-33
Identities = 72/208 (34%), Positives = 126/208 (60%), Gaps = 11/208 (5%)
Frame = +3
Query: 801 AVLDKEIIQLSEYLKEALHRELVLKQKMVILQDLLSTLIQASDSSWKGQLNEDKLKGKLR 980
++ +E+ QLS+YL+EALHRE +L+QK+ LQ LL+ +ASD+SW+ ++ED+L +L
Sbjct: 27 SMYSQELFQLSQYLQEALHREQMLEQKLATLQRLLAITQEASDTSWQALIDEDRLLSRLE 86
Query: 981 SLENQLYTCTQNYSPRGMKKVILEMEDQKHSYEQKAKESLQKVLEEKMSAEQQLQSTQRS 1160
+ NQL C++N + ++K ++ +++ KH+YE AKESL++VL+EK+ ++L +RS
Sbjct: 87 VMGNQLQACSKNQTEDSLRKELIALQEDKHNYETTAKESLRRVLQEKIEVVRKLSEVERS 146
Query: 1161 LALAEQKCEEWRSQYEALKEDWRTLGTQHRELESQLHVLQSKLQGADSRDLQMNQ----- 1325
L+ E +C + E +E+ R L ++ +++ L KL+ A+ + ++ Q
Sbjct: 147 LSNTEDECTHLKEMNERTQEELRELANKYNGAVNEIKDLSDKLKVAEGKQEEIQQKGQAE 206
Query: 1326 ------ALRLLENEHQELQGKIARLQGD 1391
+ +E + QELQ KI LQ D
Sbjct: 207 KKELQHKIDEMEEKEQELQAKIEALQAD 234
>ref|XP_857626.1| PREDICTED: similar to sarcolemma associated protein isoform 16 [Canis
familiaris].
Length = 693
Score = 140 bits (352), Expect = 4e-33
Identities = 72/208 (34%), Positives = 126/208 (60%), Gaps = 11/208 (5%)
Frame = +3
Query: 801 AVLDKEIIQLSEYLKEALHRELVLKQKMVILQDLLSTLIQASDSSWKGQLNEDKLKGKLR 980
++ +E+ QLS+YL+EALHRE +L+QK+ LQ LL+ +ASD+SW+ ++ED+L +L
Sbjct: 27 SMYSQELFQLSQYLQEALHREQMLEQKLATLQRLLAITQEASDTSWQALIDEDRLLSRLE 86
Query: 981 SLENQLYTCTQNYSPRGMKKVILEMEDQKHSYEQKAKESLQKVLEEKMSAEQQLQSTQRS 1160
+ NQL C++N + ++K ++ +++ KH+YE AKESL++VL+EK+ ++L +RS
Sbjct: 87 VMGNQLQACSKNQTEDSLRKELIALQEDKHNYETTAKESLRRVLQEKIEVVRKLSEVERS 146
Query: 1161 LALAEQKCEEWRSQYEALKEDWRTLGTQHRELESQLHVLQSKLQGADSRDLQMNQ----- 1325
L+ E +C + E +E+ R L ++ +++ L KL+ A+ + ++ Q
Sbjct: 147 LSNTEDECTHLKEMNERTQEELRELANKYNGAVNEIKDLSDKLKVAEGKQEEIQQKGQAE 206
Query: 1326 ------ALRLLENEHQELQGKIARLQGD 1391
+ +E + QELQ KI LQ D
Sbjct: 207 KKELQHKIDEMEEKEQELQAKIEALQAD 234
>ref|XP_857589.1| PREDICTED: similar to sarcolemma associated protein isoform 15 [Canis
familiaris].
Length = 631
Score = 140 bits (352), Expect = 4e-33
Identities = 72/208 (34%), Positives = 126/208 (60%), Gaps = 11/208 (5%)
Frame = +3
Query: 801 AVLDKEIIQLSEYLKEALHRELVLKQKMVILQDLLSTLIQASDSSWKGQLNEDKLKGKLR 980
++ +E+ QLS+YL+EALHRE +L+QK+ LQ LL+ +ASD+SW+ ++ED+L +L
Sbjct: 27 SMYSQELFQLSQYLQEALHREQMLEQKLATLQRLLAITQEASDTSWQALIDEDRLLSRLE 86
Query: 981 SLENQLYTCTQNYSPRGMKKVILEMEDQKHSYEQKAKESLQKVLEEKMSAEQQLQSTQRS 1160
+ NQL C++N + ++K ++ +++ KH+YE AKESL++VL+EK+ ++L +RS
Sbjct: 87 VMGNQLQACSKNQTEDSLRKELIALQEDKHNYETTAKESLRRVLQEKIEVVRKLSEVERS 146
Query: 1161 LALAEQKCEEWRSQYEALKEDWRTLGTQHRELESQLHVLQSKLQGADSRDLQMNQ----- 1325
L+ E +C + E +E+ R L ++ +++ L KL+ A+ + ++ Q
Sbjct: 147 LSNTEDECTHLKEMNERTQEELRELANKYNGAVNEIKDLSDKLKVAEGKQEEIQQKGQAE 206
Query: 1326 ------ALRLLENEHQELQGKIARLQGD 1391
+ +E + QELQ KI LQ D
Sbjct: 207 KKELQHKIDEMEEKEQELQAKIEALQAD 234
>ref|XP_857549.1| PREDICTED: similar to sarcolemma associated protein isoform 14 [Canis
familiaris].
Length = 675
Score = 140 bits (352), Expect = 4e-33
Identities = 72/208 (34%), Positives = 126/208 (60%), Gaps = 11/208 (5%)
Frame = +3
Query: 801 AVLDKEIIQLSEYLKEALHRELVLKQKMVILQDLLSTLIQASDSSWKGQLNEDKLKGKLR 980
++ +E+ QLS+YL+EALHRE +L+QK+ LQ LL+ +ASD+SW+ ++ED+L +L
Sbjct: 27 SMYSQELFQLSQYLQEALHREQMLEQKLATLQRLLAITQEASDTSWQALIDEDRLLSRLE 86
Query: 981 SLENQLYTCTQNYSPRGMKKVILEMEDQKHSYEQKAKESLQKVLEEKMSAEQQLQSTQRS 1160
+ NQL C++N + ++K ++ +++ KH+YE AKESL++VL+EK+ ++L +RS
Sbjct: 87 VMGNQLQACSKNQTEDSLRKELIALQEDKHNYETTAKESLRRVLQEKIEVVRKLSEVERS 146
Query: 1161 LALAEQKCEEWRSQYEALKEDWRTLGTQHRELESQLHVLQSKLQGADSRDLQMNQ----- 1325
L+ E +C + E +E+ R L ++ +++ L KL+ A+ + ++ Q
Sbjct: 147 LSNTEDECTHLKEMNERTQEELRELANKYNGAVNEIKDLSDKLKVAEGKQEEIQQKGQAE 206
Query: 1326 ------ALRLLENEHQELQGKIARLQGD 1391
+ +E + QELQ KI LQ D
Sbjct: 207 KKELQHKIDEMEEKEQELQAKIEALQAD 234
>ref|XP_857509.1| PREDICTED: similar to sarcolemma associated protein isoform 13 [Canis
familiaris].
Length = 622
Score = 140 bits (352), Expect = 4e-33
Identities = 72/208 (34%), Positives = 126/208 (60%), Gaps = 11/208 (5%)
Frame = +3
Query: 801 AVLDKEIIQLSEYLKEALHRELVLKQKMVILQDLLSTLIQASDSSWKGQLNEDKLKGKLR 980
++ +E+ QLS+YL+EALHRE +L+QK+ LQ LL+ +ASD+SW+ ++ED+L +L
Sbjct: 27 SMYSQELFQLSQYLQEALHREQMLEQKLATLQRLLAITQEASDTSWQALIDEDRLLSRLE 86
Query: 981 SLENQLYTCTQNYSPRGMKKVILEMEDQKHSYEQKAKESLQKVLEEKMSAEQQLQSTQRS 1160
+ NQL C++N + ++K ++ +++ KH+YE AKESL++VL+EK+ ++L +RS
Sbjct: 87 VMGNQLQACSKNQTEDSLRKELIALQEDKHNYETTAKESLRRVLQEKIEVVRKLSEVERS 146
Query: 1161 LALAEQKCEEWRSQYEALKEDWRTLGTQHRELESQLHVLQSKLQGADSRDLQMNQ----- 1325
L+ E +C + E +E+ R L ++ +++ L KL+ A+ + ++ Q
Sbjct: 147 LSNTEDECTHLKEMNERTQEELRELANKYNGAVNEIKDLSDKLKVAEGKQEEIQQKGQAE 206
Query: 1326 ------ALRLLENEHQELQGKIARLQGD 1391
+ +E + QELQ KI LQ D
Sbjct: 207 KKELQHKIDEMEEKEQELQAKIEALQAD 234
>ref|XP_857467.1| PREDICTED: similar to sarcolemma associated protein isoform 12 [Canis
familiaris].
Length = 635
Score = 140 bits (352), Expect = 4e-33
Identities = 72/208 (34%), Positives = 126/208 (60%), Gaps = 11/208 (5%)
Frame = +3
Query: 801 AVLDKEIIQLSEYLKEALHRELVLKQKMVILQDLLSTLIQASDSSWKGQLNEDKLKGKLR 980
++ +E+ QLS+YL+EALHRE +L+QK+ LQ LL+ +ASD+SW+ ++ED+L +L
Sbjct: 27 SMYSQELFQLSQYLQEALHREQMLEQKLATLQRLLAITQEASDTSWQALIDEDRLLSRLE 86
Query: 981 SLENQLYTCTQNYSPRGMKKVILEMEDQKHSYEQKAKESLQKVLEEKMSAEQQLQSTQRS 1160
+ NQL C++N + ++K ++ +++ KH+YE AKESL++VL+EK+ ++L +RS
Sbjct: 87 VMGNQLQACSKNQTEDSLRKELIALQEDKHNYETTAKESLRRVLQEKIEVVRKLSEVERS 146
Query: 1161 LALAEQKCEEWRSQYEALKEDWRTLGTQHRELESQLHVLQSKLQGADSRDLQMNQ----- 1325
L+ E +C + E +E+ R L ++ +++ L KL+ A+ + ++ Q
Sbjct: 147 LSNTEDECTHLKEMNERTQEELRELANKYNGAVNEIKDLSDKLKVAEGKQEEIQQKGQAE 206
Query: 1326 ------ALRLLENEHQELQGKIARLQGD 1391
+ +E + QELQ KI LQ D
Sbjct: 207 KKELQHKIDEMEEKEQELQAKIEALQAD 234
>ref|XP_857342.1| PREDICTED: similar to sarcolemma associated protein isoform 9 [Canis
familiaris].
Length = 635
Score = 140 bits (352), Expect = 4e-33
Identities = 72/208 (34%), Positives = 126/208 (60%), Gaps = 11/208 (5%)
Frame = +3
Query: 801 AVLDKEIIQLSEYLKEALHRELVLKQKMVILQDLLSTLIQASDSSWKGQLNEDKLKGKLR 980
++ +E+ QLS+YL+EALHRE +L+QK+ LQ LL+ +ASD+SW+ ++ED+L +L
Sbjct: 27 SMYSQELFQLSQYLQEALHREQMLEQKLATLQRLLAITQEASDTSWQALIDEDRLLSRLE 86
Query: 981 SLENQLYTCTQNYSPRGMKKVILEMEDQKHSYEQKAKESLQKVLEEKMSAEQQLQSTQRS 1160
+ NQL C++N + ++K ++ +++ KH+YE AKESL++VL+EK+ ++L +RS
Sbjct: 87 VMGNQLQACSKNQTEDSLRKELIALQEDKHNYETTAKESLRRVLQEKIEVVRKLSEVERS 146
Query: 1161 LALAEQKCEEWRSQYEALKEDWRTLGTQHRELESQLHVLQSKLQGADSRDLQMNQ----- 1325
L+ E +C + E +E+ R L ++ +++ L KL+ A+ + ++ Q
Sbjct: 147 LSNTEDECTHLKEMNERTQEELRELANKYNGAVNEIKDLSDKLKVAEGKQEEIQQKGQAE 206
Query: 1326 ------ALRLLENEHQELQGKIARLQGD 1391
+ +E + QELQ KI LQ D
Sbjct: 207 KKELQHKIDEMEEKEQELQAKIEALQAD 234
>ref|XP_857302.1| PREDICTED: similar to sarcolemma associated protein isoform 8 [Canis
familiaris].
Length = 639
Score = 140 bits (352), Expect = 4e-33
Identities = 72/208 (34%), Positives = 126/208 (60%), Gaps = 11/208 (5%)
Frame = +3
Query: 801 AVLDKEIIQLSEYLKEALHRELVLKQKMVILQDLLSTLIQASDSSWKGQLNEDKLKGKLR 980
++ +E+ QLS+YL+EALHRE +L+QK+ LQ LL+ +ASD+SW+ ++ED+L +L
Sbjct: 27 SMYSQELFQLSQYLQEALHREQMLEQKLATLQRLLAITQEASDTSWQALIDEDRLLSRLE 86
Query: 981 SLENQLYTCTQNYSPRGMKKVILEMEDQKHSYEQKAKESLQKVLEEKMSAEQQLQSTQRS 1160
+ NQL C++N + ++K ++ +++ KH+YE AKESL++VL+EK+ ++L +RS
Sbjct: 87 VMGNQLQACSKNQTEDSLRKELIALQEDKHNYETTAKESLRRVLQEKIEVVRKLSEVERS 146
Query: 1161 LALAEQKCEEWRSQYEALKEDWRTLGTQHRELESQLHVLQSKLQGADSRDLQMNQ----- 1325
L+ E +C + E +E+ R L ++ +++ L KL+ A+ + ++ Q
Sbjct: 147 LSNTEDECTHLKEMNERTQEELRELANKYNGAVNEIKDLSDKLKVAEGKQEEIQQKGQAE 206
Query: 1326 ------ALRLLENEHQELQGKIARLQGD 1391
+ +E + QELQ KI LQ D
Sbjct: 207 KKELQHKIDEMEEKEQELQAKIEALQAD 234
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 56,651,136
Number of extensions: 1747100
Number of successful extensions: 11046
Number of sequences better than 1.0e-05: 28
Number of HSP's gapped: 10825
Number of HSP's successfully gapped: 29
Length of query: 469
Length of database: 18,874,504
Length adjustment: 106
Effective length of query: 363
Effective length of database: 15,340,888
Effective search space: 5568742344
Effective search space used: 5568742344
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-004155
(1407 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_079504.2| TRAF3-interacting JNK-activating modulator [Hom... 535 e-152
Alignment gi|NP_009090.2| sarcolemmal membrane-associated protein [Homo s... 140 4e-33
Alignment gi|NP_115627.6| coiled-coil domain-containing protein 88B [Homo... 61 3e-09
Alignment gi|NP_006176.2| nuclear mitotic apparatus protein 1 [Homo sapie... 59 8e-09
Alignment gi|NP_001166028.1| Golgin subfamily A member 3 isoform 2 [Homo ... 53 8e-07
Alignment gi|NP_005886.2| Golgin subfamily A member 3 isoform 1 [Homo sap... 53 8e-07
Alignment gi|NP_937883.1| CAP-Gly domain-containing linker protein 1 isof... 52 1e-06
Alignment gi|NP_002947.1| CAP-Gly domain-containing linker protein 1 isof... 52 1e-06
Alignment gi|NP_001036816.1| tropomyosin alpha-3 chain isoform 4 [Homo sa... 50 5e-06
Alignment gi|NP_056503.1| hypothetical protein LOC27146 [Homo sapiens]. 49 9e-06
>ref|NP_079504.2| TRAF3-interacting JNK-activating modulator [Homo sapiens].
Length = 551
Score = 535 bits (1378), Expect = e-152
Identities = 287/387 (74%), Positives = 306/387 (79%), Gaps = 17/387 (4%)
Frame = +3
Query: 285 MLSPDPRPAPGLARWAESYEAKCXXXXXXXXXXXXXPNVTTCRQVGKALRTXXXXXXXXX 464
M+SPDPRP+PGLARWAESYEAKC PNVTTCRQVGK LR
Sbjct: 1 MISPDPRPSPGLARWAESYEAKCERRQEIRESRRCRPNVTTCRQVGKTLRIQQREQLQRA 60
Query: 465 XXXXXXXLRHLEVEEKGQAERSQTRQPGSSRA-GQAPDLKEPWPWANRISSPGQQVSGTS 641
R+LE+EEKG+A+ Q R+ G SR GQ LKEP A RISSP +QV+GTS
Sbjct: 61 RLQQFFRRRNLELEEKGKAQHPQAREQGPSRRPGQVTVLKEPLSCARRISSPREQVTGTS 120
Query: 642 AEVFPAQRHPPSGARRD----------------SAVQKLPKQHRGTQTKAEETQPTTKND 773
+EVFPAQ PPSG RD + ++K PK HRGTQTKAE PT KND
Sbjct: 121 SEVFPAQHPPPSGICRDLSDHLSSQAGGLPPQDTPIKKPPKHHRGTQTKAEG--PTIKND 178
Query: 774 ASQQTNYGVAVLDKEIIQLSEYLKEALHRELVLKQKMVILQDLLSTLIQASDSSWKGQLN 953
ASQQTNYGVAVLDKEIIQLS+YLKEAL RELVLKQKMVILQDLLSTLIQASDSSWKGQLN
Sbjct: 179 ASQQTNYGVAVLDKEIIQLSDYLKEALQRELVLKQKMVILQDLLSTLIQASDSSWKGQLN 238
Query: 954 EDKLKGKLRSLENQLYTCTQNYSPRGMKKVILEMEDQKHSYEQKAKESLQKVLEEKMSAE 1133
EDKLKGKLRSLENQLYTCTQ YSP GMKKV+LEMEDQK+SYEQKAKESLQKVLEEKM+AE
Sbjct: 239 EDKLKGKLRSLENQLYTCTQKYSPWGMKKVLLEMEDQKNSYEQKAKESLQKVLEEKMNAE 298
Query: 1134 QQLQSTQRSLALAEQKCEEWRSQYEALKEDWRTLGTQHRELESQLHVLQSKLQGADSRDL 1313
QQLQSTQRSLALAEQKCEEWRSQYEALKEDWRTLGTQHRELESQLHVLQSKLQGADSRDL
Sbjct: 299 QQLQSTQRSLALAEQKCEEWRSQYEALKEDWRTLGTQHRELESQLHVLQSKLQGADSRDL 358
Query: 1314 QMNQALRLLENEHQELQGKIARLQGDK 1394
QMNQALR LENEHQ+LQ KI LQGD+
Sbjct: 359 QMNQALRFLENEHQQLQAKIECLQGDR 385
>ref|NP_009090.2| sarcolemmal membrane-associated protein [Homo sapiens].
Length = 811
Score = 140 bits (352), Expect = 4e-33
Identities = 72/208 (34%), Positives = 126/208 (60%), Gaps = 11/208 (5%)
Frame = +3
Query: 801 AVLDKEIIQLSEYLKEALHRELVLKQKMVILQDLLSTLIQASDSSWKGQLNEDKLKGKLR 980
++ +E+ QLS+YL+EALHRE +L+QK+ LQ LL+ +ASD+SW+ ++ED+L +L
Sbjct: 159 SMYSQELFQLSQYLQEALHREQMLEQKLATLQRLLAITQEASDTSWQALIDEDRLLSRLE 218
Query: 981 SLENQLYTCTQNYSPRGMKKVILEMEDQKHSYEQKAKESLQKVLEEKMSAEQQLQSTQRS 1160
+ NQL C++N + ++K ++ +++ KH+YE AKESL++VL+EK+ ++L +RS
Sbjct: 219 VMGNQLQACSKNQTEDSLRKELIALQEDKHNYETTAKESLRRVLQEKIEVVRKLSEVERS 278
Query: 1161 LALAEQKCEEWRSQYEALKEDWRTLGTQHRELESQLHVLQSKLQGADSRDLQMNQ----- 1325
L+ E +C + E +E+ R L ++ +++ L KL+ A+ + ++ Q
Sbjct: 279 LSNTEDECTHLKEMNERTQEELRELANKYNGAVNEIKDLSDKLKVAEGKQEEIQQKGQAE 338
Query: 1326 ------ALRLLENEHQELQGKIARLQGD 1391
+ +E + QELQ KI LQ D
Sbjct: 339 KKELQHKIDEMEEKEQELQAKIEALQAD 366
>ref|NP_115627.6| coiled-coil domain-containing protein 88B [Homo sapiens].
Length = 1476
Score = 60.8 bits (146), Expect = 3e-09
Identities = 57/236 (24%), Positives = 116/236 (49%), Gaps = 9/236 (3%)
Frame = +3
Query: 714 KQHRGTQTKAE---ETQPTTKNDASQQTNYGVAVLDKEIIQLSEYL-----KEALHRELV 869
++++G + + E + T+K +A + L++E+ QL + K+ +LV
Sbjct: 914 QRYQGLEQRLEAELQAAATSKEEALMELKTRALQLEEELFQLRQGPAGLGPKKRAEPQLV 973
Query: 870 LKQKMVILQ-DLLSTLIQASDSSWKGQLNEDKLKGKLRSLENQLYTCTQNYSPRGMKKVI 1046
Q + +++ + + ++ A ++ +GQL L+G+L SL+ R + ++
Sbjct: 974 ETQNVRLIEVERSNAMLVAEKAALQGQLQH--LEGQLGSLQG-----------RAQELLL 1020
Query: 1047 LEMEDQKHSYEQKAKESLQKVLEEKMSAEQQLQSTQRSLALAEQKCEEWRSQYEALKEDW 1226
Q+HS +A++S+ ++ +++ ++L+ + + A Q EE R Q +AL D
Sbjct: 1021 QSQRAQEHSSRLQAEKSVLEIQGQEL--HRKLEVLEEEVRAARQSQEETRGQQQALLRDH 1078
Query: 1227 RTLGTQHRELESQLHVLQSKLQGADSRDLQMNQALRLLENEHQELQGKIARLQGDK 1394
+ L R E++L L + RDL+ N +R LE H+ELQG+ +LQ +
Sbjct: 1079 KALAQLQRRQEAELEGLLVR-----HRDLKAN--MRALELAHRELQGRHEQLQAQR 1127
>ref|NP_006176.2| nuclear mitotic apparatus protein 1 [Homo sapiens].
Length = 2115
Score = 59.3 bits (142), Expect = 8e-09
Identities = 56/218 (25%), Positives = 94/218 (43%), Gaps = 13/218 (5%)
Frame = +3
Query: 714 KQHRGTQTKAEETQPTTKNDASQQTNYGVAVLDKEIIQLSEYLKEALHRELVLKQKMVIL 893
KQ + E Q T+ D +QQ + + + LK+ E K+ IL
Sbjct: 561 KQKEQQLKEVAEKQEATRQDHAQQLATAAEEREASLRERDAALKQLEALEKEKAAKLEIL 620
Query: 894 QDLLSTLIQASDSSWKGQLNEDKLKGKLRSLENQLYTC--TQNYSPRGMKKVILEMEDQK 1067
Q L +A DS+ + K +L +L C T + + E+E Q
Sbjct: 621 QQQLQVANEARDSAQTSVTQAQREKAELSRKVEELQACVETARQEQHEAQAQVAELELQL 680
Query: 1068 HSYEQKAKESLQKVLEEKMSAEQQLQSTQRSL-----ALAEQK------CEEWRSQYEAL 1214
S +QKA E ++V +EK ++QLQ+ + SL +L E+K EE + L
Sbjct: 681 RSEQQKATEK-ERVAQEKDQLQEQLQALKESLKVTKGSLEEEKRRAADALEEQQRCISEL 739
Query: 1215 KEDWRTLGTQHRELESQLHVLQSKLQGADSRDLQMNQA 1328
K + R+L QH+ +L ++ +G ++R Q+ +A
Sbjct: 740 KAETRSLVEQHKRERKELEEERAGRKGLEARLQQLGEA 777
>ref|NP_001166028.1| Golgin subfamily A member 3 isoform 2 [Homo sapiens].
Length = 1134
Score = 52.8 bits (125), Expect = 8e-07
Identities = 71/282 (25%), Positives = 119/282 (42%), Gaps = 18/282 (6%)
Frame = +3
Query: 600 NRISSPGQQVSGTSAEVFPAQRHPPSGARRDSAVQKLPKQHRGTQTKAEETQP-----TT 764
N + +Q A+V QR S +D+ V L +Q Q++ ++ Q T+
Sbjct: 503 NDLQVAEEQYQRLMAKVEDMQR---SMLSKDNTVHDLRQQMTALQSQLQQVQLERTTLTS 559
Query: 765 KNDASQQTNYGVAVLDKEIIQLSEYLKEALHRELVLKQKMVILQDLLSTLIQASDSSWKG 944
K ASQ EI L +++ ++L L Q+ + IQ + G
Sbjct: 560 KLKASQA----------EISSLQS-VRQWYQQQLALAQEARVRLQGEMAHIQVGQMTQAG 608
Query: 945 QLNEDKLKGKLRSLENQLYTCTQNYSPRGMKKVILEME-------DQKHSYEQ------K 1085
L KL+ SL QL T TQ+ S + ++ +++ DQ+ ++ Q
Sbjct: 609 LLEHLKLENV--SLSQQL-TETQHRSMKEKGRIAAQLQGIEADMLDQEAAFMQIQEAKTM 665
Query: 1086 AKESLQKVLEEKMSAEQQLQSTQRSLALAEQKCEEWRSQYEALKEDWRTLGTQHRELESQ 1265
+E LQ+ LEE ++LQ S A EQ+ E+ + + L +H +L Q
Sbjct: 666 VEEDLQRRLEEFEGERERLQRMADSAASLEQQLEQVKLTLLQRDQQLEALQQEHLDLMKQ 725
Query: 1266 LHVLQSKLQGADSRDLQMNQALRLLENEHQELQGKIARLQGD 1391
L + Q LQ + Q+L L+ + ELQ ++ LQG+
Sbjct: 726 LTLTQEALQSRE-------QSLDALQTHYDELQARLGELQGE 760
>ref|NP_005886.2| Golgin subfamily A member 3 isoform 1 [Homo sapiens].
Length = 1498
Score = 52.8 bits (125), Expect = 8e-07
Identities = 71/282 (25%), Positives = 119/282 (42%), Gaps = 18/282 (6%)
Frame = +3
Query: 600 NRISSPGQQVSGTSAEVFPAQRHPPSGARRDSAVQKLPKQHRGTQTKAEETQP-----TT 764
N + +Q A+V QR S +D+ V L +Q Q++ ++ Q T+
Sbjct: 503 NDLQVAEEQYQRLMAKVEDMQR---SMLSKDNTVHDLRQQMTALQSQLQQVQLERTTLTS 559
Query: 765 KNDASQQTNYGVAVLDKEIIQLSEYLKEALHRELVLKQKMVILQDLLSTLIQASDSSWKG 944
K ASQ EI L +++ ++L L Q+ + IQ + G
Sbjct: 560 KLKASQA----------EISSLQS-VRQWYQQQLALAQEARVRLQGEMAHIQVGQMTQAG 608
Query: 945 QLNEDKLKGKLRSLENQLYTCTQNYSPRGMKKVILEME-------DQKHSYEQ------K 1085
L KL+ SL QL T TQ+ S + ++ +++ DQ+ ++ Q
Sbjct: 609 LLEHLKLENV--SLSQQL-TETQHRSMKEKGRIAAQLQGIEADMLDQEAAFMQIQEAKTM 665
Query: 1086 AKESLQKVLEEKMSAEQQLQSTQRSLALAEQKCEEWRSQYEALKEDWRTLGTQHRELESQ 1265
+E LQ+ LEE ++LQ S A EQ+ E+ + + L +H +L Q
Sbjct: 666 VEEDLQRRLEEFEGERERLQRMADSAASLEQQLEQVKLTLLQRDQQLEALQQEHLDLMKQ 725
Query: 1266 LHVLQSKLQGADSRDLQMNQALRLLENEHQELQGKIARLQGD 1391
L + Q LQ + Q+L L+ + ELQ ++ LQG+
Sbjct: 726 LTLTQEALQSRE-------QSLDALQTHYDELQARLGELQGE 760
>ref|NP_937883.1| CAP-Gly domain-containing linker protein 1 isoform b [Homo sapiens].
Length = 1392
Score = 52.0 bits (123), Expect = 1e-06
Identities = 62/293 (21%), Positives = 126/293 (43%), Gaps = 5/293 (1%)
Frame = +3
Query: 486 LRHLEVEEKGQAERSQTRQPGSSRAGQAPDLKEPWPWANRISSPGQQVSGTSAEVFPAQR 665
++HLE+E+ ++ ++ + +R Q +LK N S QV T + +
Sbjct: 758 IKHLEIEKNAESSKASS----ITRELQGRELKLTNLQENL--SEVSQVKETLEKELQILK 811
Query: 666 HPPSGARRDSAVQKLPKQHRGTQTKAEETQPTTKNDASQQTNYGVAVLDKEIIQLSEYLK 845
+ A ++ + Q + +E Q + ++ +A ++ + + E
Sbjct: 812 EKFAEASEEAVSVQRSMQETVNKLHQKEEQFNMLSSDLEKLRENLADMEAKFREKDE--- 868
Query: 846 EALHRELVLKQKMVILQDLLSTLIQASDSSWKGQLNEDKLKGKLRSLEN-QLYTCTQNYS 1022
E ++K K + D+ + + D+S + D+L+ K R +E QL N +
Sbjct: 869 ---REEQLIKAKEKLENDIAEIMKMSGDNSSQLTKMNDELRLKERDVEELQLKLTKANEN 925
Query: 1023 PRGMKKVILEMEDQKHSYEQKAKESLQKVLEEKMSAEQQLQSTQRSLALAEQKCEEWRSQ 1202
++K I ED EQ +E+ +K EEK E++L ++ + + +C+E +++
Sbjct: 926 ASFLQKSI---EDMTVKAEQSQQEAAKKHEEEKKELERKLSDLEKKMETSHNQCQELKAR 982
Query: 1203 YEALKEDWRTLGTQHRE----LESQLHVLQSKLQGADSRDLQMNQALRLLENE 1349
YE + + T+H E L+ L + KL+GA + + Q L L +
Sbjct: 983 YERATSETK---TKHEEILQNLQKTLLDTEDKLKGAREENSGLLQELEELRKQ 1032
>ref|NP_002947.1| CAP-Gly domain-containing linker protein 1 isoform a [Homo sapiens].
Length = 1427
Score = 52.0 bits (123), Expect = 1e-06
Identities = 62/293 (21%), Positives = 126/293 (43%), Gaps = 5/293 (1%)
Frame = +3
Query: 486 LRHLEVEEKGQAERSQTRQPGSSRAGQAPDLKEPWPWANRISSPGQQVSGTSAEVFPAQR 665
++HLE+E+ ++ ++ + +R Q +LK N S QV T + +
Sbjct: 793 IKHLEIEKNAESSKASS----ITRELQGRELKLTNLQENL--SEVSQVKETLEKELQILK 846
Query: 666 HPPSGARRDSAVQKLPKQHRGTQTKAEETQPTTKNDASQQTNYGVAVLDKEIIQLSEYLK 845
+ A ++ + Q + +E Q + ++ +A ++ + + E
Sbjct: 847 EKFAEASEEAVSVQRSMQETVNKLHQKEEQFNMLSSDLEKLRENLADMEAKFREKDE--- 903
Query: 846 EALHRELVLKQKMVILQDLLSTLIQASDSSWKGQLNEDKLKGKLRSLEN-QLYTCTQNYS 1022
E ++K K + D+ + + D+S + D+L+ K R +E QL N +
Sbjct: 904 ---REEQLIKAKEKLENDIAEIMKMSGDNSSQLTKMNDELRLKERDVEELQLKLTKANEN 960
Query: 1023 PRGMKKVILEMEDQKHSYEQKAKESLQKVLEEKMSAEQQLQSTQRSLALAEQKCEEWRSQ 1202
++K I ED EQ +E+ +K EEK E++L ++ + + +C+E +++
Sbjct: 961 ASFLQKSI---EDMTVKAEQSQQEAAKKHEEEKKELERKLSDLEKKMETSHNQCQELKAR 1017
Query: 1203 YEALKEDWRTLGTQHRE----LESQLHVLQSKLQGADSRDLQMNQALRLLENE 1349
YE + + T+H E L+ L + KL+GA + + Q L L +
Sbjct: 1018 YERATSETK---TKHEEILQNLQKTLLDTEDKLKGAREENSGLLQELEELRKQ 1067
>ref|NP_001036816.1| tropomyosin alpha-3 chain isoform 4 [Homo sapiens].
Length = 248
Score = 50.1 bits (118), Expect = 5e-06
Identities = 53/243 (21%), Positives = 105/243 (43%), Gaps = 9/243 (3%)
Frame = +3
Query: 699 VQKLPKQHRGTQTKAEETQPTTKND--ASQQTNYGVAVLDKEIIQLSEYLKEALHRELVL 872
+Q L +Q + +AE Q + + A +Q VA L++ I + E L A R
Sbjct: 14 IQVLQQQADDAEERAERLQREVEGERRAREQAEAEVASLNRRIQLVEEELDRAQERLATA 73
Query: 873 KQKMVILQDLLSTLIQASDSSWKGQLNEDKLKGKLRSLENQLYTCTQNYSPRGMKKVILE 1052
QK L +A+D S +G ++ +EN+ + M+ ++
Sbjct: 74 LQK-------LEEAEKAADESERG----------MKVIENRALKDEEK-----MELQEIQ 111
Query: 1053 MEDQKHSYEQKAKESLQKVLEEKMSAEQQLQSTQRSLALAEQKCEEWRSQYEALKEDWRT 1232
+++ KH E+ A ++V + + E L+ T+ LAE KC E + + + + ++
Sbjct: 112 LKEAKHIAEE-ADRKYEEVARKLVIIEGDLERTEERAELAESKCSELEEELKNVTNNLKS 170
Query: 1233 LGTQ-------HRELESQLHVLQSKLQGADSRDLQMNQALRLLENEHQELQGKIARLQGD 1391
L Q + E ++ +L KL+ A++R +++ LE +L+ K+ + +
Sbjct: 171 LEAQAEKYSQKEDKYEEEIKILTDKLKEAETRAEFAERSVAKLEKTIDDLEDKLKCTKEE 230
Query: 1392 KTC 1400
C
Sbjct: 231 HLC 233
>ref|NP_056503.1| hypothetical protein LOC27146 [Homo sapiens].
Length = 1060
Score = 49.3 bits (116), Expect = 9e-06
Identities = 64/250 (25%), Positives = 112/250 (44%), Gaps = 11/250 (4%)
Frame = +3
Query: 672 PSGARRDSAVQKLPKQHRGTQTKAEETQPTTKNDASQQTNYGVAVLDKEIIQLSEYLKEA 851
P+GA + + Q+L +QH E P K D + G DK + E
Sbjct: 511 PTGA--EESPQELGRQHCSI---LETQDPCLKLDETSPR--GEEYQDKLAAEEGTSSDEE 563
Query: 852 LHRELVLKQKMVILQDLLSTL------IQASDSSWKGQLNEDKLKGKLRSLENQLYTCTQ 1013
+++LK+ L S L IQ + W+ Q + KL+ ++ ++ L CT
Sbjct: 564 ERTKVLLKEGSDPQPPLGSLLKEKTSKIQRLEEDWQSQ--KAKLQAQVSQMQQALEQCTS 621
Query: 1014 NYSPRGMKKVILEMEDQKHSYEQKAKESLQKVLEEKMSAEQQLQ-STQRSLALAEQ-KCE 1187
NY R + + ++ D + +K + LQ+ ++ + + QL+ S QR+L + E+ + +
Sbjct: 622 NY--REDLQALKQLSDLE---REKLQRELQETTQQNHAMKAQLEASHQRALRMLEKARHQ 676
Query: 1188 EWRSQYEAL-KEDWRTLGTQHRELESQLHVLQSKLQG--ADSRDLQMNQALRLLENEHQE 1358
E ++ E L KE +L QH+ +L L+ K + + R+ Q LLE+ QE
Sbjct: 677 ELKATEERLKKESSHSLQIQHQTHRLELQALEEKARQELQEERERMQAQQALLLESLRQE 736
Query: 1359 LQGKIARLQG 1388
L + A G
Sbjct: 737 LSEQQAACSG 746
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 55,516,016
Number of extensions: 1706514
Number of successful extensions: 10290
Number of sequences better than 1.0e-05: 11
Number of HSP's gapped: 10088
Number of HSP's successfully gapped: 11
Length of query: 469
Length of database: 18,297,164
Length adjustment: 106
Effective length of query: 363
Effective length of database: 14,802,980
Effective search space: 5373481740
Effective search space used: 5373481740
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-004155
(1407 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_694777.3| TRAF3-interacting JNK-activating modulator [Mus... 473 e-133
Alignment gi|NP_114397.3| sarcolemmal membrane-associated protein [Mus mu... 141 1e-33
Alignment gi|NP_001074760.1| coiled-coil domain-containing protein 88B [M... 56 6e-08
Alignment gi|NP_082757.1| coiled-coil domain-containing protein 18 [Mus m... 54 3e-07
Alignment gi|NP_062739.2| CAP-Gly domain-containing linker protein 1 [Mus... 51 3e-06
Alignment gi|NP_109604.1| myosin-1 [Mus musculus]. 50 6e-06
>ref|NP_694777.3| TRAF3-interacting JNK-activating modulator [Mus musculus].
Length = 513
Score = 473 bits (1218), Expect = e-133
Identities = 256/385 (66%), Positives = 279/385 (72%), Gaps = 16/385 (4%)
Frame = +3
Query: 285 MLSPDPRPAPGLARWAESYEAKCXXXXXXXXXXXXXPNVTTCRQVGKALRTXXXXXXXXX 464
M+S D R +PGLARWAESYEAKC N TTCRQ GK LRT
Sbjct: 1 MISSDSRSSPGLARWAESYEAKCERRQETRENRRRRRNETTCRQPGKVLRTQHKERLQGA 60
Query: 465 XXXXXXXLRHLEVEEKGQAERSQTRQPGSSRAGQAPDLKEPWPWANRISSPGQQVSGTSA 644
R+LE E+KGQA GQ LKE P AN+ S PGQQ +G S+
Sbjct: 61 RQLQFLKRRNLEEEKKGQAREQGPSSKTDGGTGQVSILKESLPGANKASFPGQQETGISS 120
Query: 645 EVFPAQRHPPSGARRD----------------SAVQKLPKQHRGTQTKAEETQPTTKNDA 776
EVFPA H SG +RD S ++K +QHRGTQTKAEE PT KNDA
Sbjct: 121 EVFPALHHSSSGIQRDLGGHHASHGRAFPPQDSDIKKPHRQHRGTQTKAEEALPTIKNDA 180
Query: 777 SQQTNYGVAVLDKEIIQLSEYLKEALHRELVLKQKMVILQDLLSTLIQASDSSWKGQLNE 956
SQQT GVAVLDK+IIQLSEYLKEALHREL+LK+KMVILQDLL LI+ASDSSWKGQLNE
Sbjct: 181 SQQTKCGVAVLDKDIIQLSEYLKEALHRELILKKKMVILQDLLPALIRASDSSWKGQLNE 240
Query: 957 DKLKGKLRSLENQLYTCTQNYSPRGMKKVILEMEDQKHSYEQKAKESLQKVLEEKMSAEQ 1136
DKLKGKLRSLENQLYTC Q +SP GMKKV+LEMEDQ+ SYEQKAK SLQKVLEEKM AEQ
Sbjct: 241 DKLKGKLRSLENQLYTCLQKHSPWGMKKVLLEMEDQRSSYEQKAKASLQKVLEEKMCAEQ 300
Query: 1137 QLQSTQRSLALAEQKCEEWRSQYEALKEDWRTLGTQHRELESQLHVLQSKLQGADSRDLQ 1316
QLQ Q SLALAEQKC+EW+SQYEALKEDWRTLG QHRELESQLHVLQSKLQGADSRD Q
Sbjct: 301 QLQRAQLSLALAEQKCQEWKSQYEALKEDWRTLGDQHRELESQLHVLQSKLQGADSRDSQ 360
Query: 1317 MNQALRLLENEHQELQGKIARLQGD 1391
M+QAL+LLENEHQELQ K+ LQGD
Sbjct: 361 MSQALQLLENEHQELQTKLESLQGD 385
>ref|NP_114397.3| sarcolemmal membrane-associated protein [Mus musculus].
Length = 821
Score = 141 bits (355), Expect = 1e-33
Identities = 73/208 (35%), Positives = 126/208 (60%), Gaps = 11/208 (5%)
Frame = +3
Query: 801 AVLDKEIIQLSEYLKEALHRELVLKQKMVILQDLLSTLIQASDSSWKGQLNEDKLKGKLR 980
++ +E+ QLS+YL+EALHRE +L+QK+ LQ LL+ +ASD+SW+ ++ED+L +L
Sbjct: 159 SMYSQELFQLSQYLQEALHREQMLEQKLATLQRLLAITQEASDTSWQALIDEDRLLSRLE 218
Query: 981 SLENQLYTCTQNYSPRGMKKVILEMEDQKHSYEQKAKESLQKVLEEKMSAEQQLQSTQRS 1160
+ NQL C++N + ++K ++ +++ KHSYE AKESL++VL+EK+ ++L +RS
Sbjct: 219 VMGNQLQACSKNQTEDSLRKELIALQEDKHSYETTAKESLRRVLQEKIEVVRKLSEVERS 278
Query: 1161 LALAEQKCEEWRSQYEALKEDWRTLGTQHRELESQLHVLQSKLQGADSRDLQMNQ----- 1325
L+ E +C + E +E+ R L ++ +++ L KL+ A+ + ++ Q
Sbjct: 279 LSNTEDECTHLKEMNERTQEELRELANKYNGAVNEIKDLSDKLKVAEGKQEEIQQKGQAE 338
Query: 1326 ------ALRLLENEHQELQGKIARLQGD 1391
+ +E + QELQ KI LQ D
Sbjct: 339 KKELQTKIDEMEEKEQELQAKIEALQAD 366
>ref|NP_001074760.1| coiled-coil domain-containing protein 88B [Mus musculus].
Length = 1481
Score = 56.2 bits (134), Expect = 6e-08
Identities = 58/233 (24%), Positives = 110/233 (47%), Gaps = 7/233 (3%)
Frame = +3
Query: 717 QHRGTQTKAE-ETQPTTKNDASQQTNYGVAVLDKEIIQLSEYLKE------ALHRELVLK 875
+H + +AE + T+K +A + L++E+IQL +Y + A R + +
Sbjct: 922 RHLEQRLEAELQAASTSKEEALMELKARALQLEEELIQLRQYPVDLATGARAGPRTVETQ 981
Query: 876 QKMVILQDLLSTLIQASDSSWKGQLNEDKLKGKLRSLENQLYTCTQNYSPRGMKKVILEM 1055
+I + + + A ++ +GQL L+G+L SL+ R + ++
Sbjct: 982 NGRLIEVERNNATLVAEKAALQGQLQH--LEGQLGSLQG-----------RAQELLLQSQ 1028
Query: 1056 EDQKHSYEQKAKESLQKVLEEKMSAEQQLQSTQRSLALAEQKCEEWRSQYEALKEDWRTL 1235
Q+HS +A++S+ ++ +++ ++L + + A + EE R Q +AL D L
Sbjct: 1029 RAQEHSSRLQAEKSMMEMQGQEL--HRKLGVLEEEVRAARRAQEETRGQQQALLRDHEAL 1086
Query: 1236 GTQHRELESQLHVLQSKLQGADSRDLQMNQALRLLENEHQELQGKIARLQGDK 1394
R E++L L + RDL+ N +R LE H+ELQG+ +LQ +
Sbjct: 1087 VQLQRRQETELEGLLVR-----HRDLKAN--MRALELAHRELQGRHEQLQAQR 1132
>ref|NP_082757.1| coiled-coil domain-containing protein 18 [Mus musculus].
Length = 1455
Score = 53.9 bits (128), Expect = 3e-07
Identities = 53/219 (24%), Positives = 97/219 (44%), Gaps = 9/219 (4%)
Frame = +3
Query: 729 TQTKAEETQPTTKNDASQQTNYGVAVLDKEIIQLS-------EYLKEALHRELVLKQKMV 887
TQ+KA+ +++Q+ + +L+++II L + L+EA +L QKMV
Sbjct: 152 TQSKAK----IAMLESAQEQAANIPILEEQIINLEAEVSAQDKVLREA-EDKLEQSQKMV 206
Query: 888 ILQDLLSTLIQASDSSWKGQLNEDKLKGKL--RSLENQLYTCTQNYSPRGMKKVILEMED 1061
I ++ + K L E +GK R LY E+
Sbjct: 207 IEKEHSLQEAKEECIKLKVDLLEQSKQGKRAERQRNEALYNAE-------------ELSK 253
Query: 1062 QKHSYEQKAKESLQKVLEEKMSAEQQLQSTQRSLALAEQKCEEWRSQYEALKEDWRTLGT 1241
Y++K E L+KV +E+ E+ L + ++ ++KC ++S+ E LKE +R L
Sbjct: 254 AFQLYKEKVAEKLEKVQDEEEILERNLSNCEKENKRLQEKCNLYKSELEILKEKFRELKE 313
Query: 1242 QHRELESQLHVLQSKLQGADSRDLQMNQALRLLENEHQE 1358
+H + +L ++ K S+ + Q + LE E ++
Sbjct: 314 EHYSGKEKLMIMAMKNSEVMSQLTESRQCILKLERELED 352
>ref|NP_062739.2| CAP-Gly domain-containing linker protein 1 [Mus musculus].
Length = 1391
Score = 50.8 bits (120), Expect = 3e-06
Identities = 61/250 (24%), Positives = 114/250 (45%), Gaps = 11/250 (4%)
Frame = +3
Query: 690 DSAVQKLPKQHRGTQTKAEETQPTTKNDASQ--QTNYGVAVLDKEIIQLSEYL------- 842
+ +Q L ++ T +A Q ++ ++ Q VL E+ +L E L
Sbjct: 803 EKELQTLKEKFASTSEEAVSAQTRMQDTVNKLHQKEEQFNVLSSELEKLRENLTDMEAKF 862
Query: 843 KEALHRE-LVLKQKMVILQDLLSTLIQASDSSWKGQLNEDKLKGKLRSLEN-QLYTCTQN 1016
KE RE ++K K + D+ + + D+S + D+L+ K RS+E QL N
Sbjct: 863 KEKDDREDQLVKAKEKLENDIAEIMKMSGDNSSQLTKMNDELRLKERSVEELQLKLTKAN 922
Query: 1017 YSPRGMKKVILEMEDQKHSYEQKAKESLQKVLEEKMSAEQQLQSTQRSLALAEQKCEEWR 1196
+ ++K I E+ + EQ +++ +K EEK E++L ++ + + +C++ +
Sbjct: 923 ENASFLQKSIGEVTLKA---EQSQQQAARKHEEEKKELEEKLLELEKKMETSYNQCQDLK 979
Query: 1197 SQYEALKEDWRTLGTQHRELESQLHVLQSKLQGADSRDLQMNQALRLLENEHQELQGKIA 1376
++YE + + T+H E+ L LQ L + + +A R L + +EL
Sbjct: 980 AKYEKASSETK---TKHEEI---LQNLQKMLADTEDKLKAAQEANRDLMQDMEEL----- 1028
Query: 1377 RLQGDKTCAA 1406
+ Q DK AA
Sbjct: 1029 KTQADKAKAA 1038
>ref|NP_109604.1| myosin-1 [Mus musculus].
Length = 1942
Score = 49.7 bits (117), Expect = 6e-06
Identities = 67/327 (20%), Positives = 131/327 (40%), Gaps = 29/327 (8%)
Frame = +3
Query: 498 EVEEKGQAERSQTRQPGSSRAGQAPDLKEPWPWANRISSPGQQVSGTSAEVFPAQRHPPS 677
E+EE+ +AER+ + R+ + +L+E + R+ G TSA++ ++
Sbjct: 1124 ELEEEIEAERASRAKAEKQRSDLSRELEEI---SERLEEAG---GATSAQIEMNKKREAE 1177
Query: 678 GARRDSAVQKLPKQHRGTQTKAEETQPTTKNDASQQTNYGVAV---LDKEIIQLSEYLKE 848
+ +++ QH T + + + +Q + V L+KE ++ + +
Sbjct: 1178 FQKMRRDLEEATLQHEATAATLRKKHADSVAELGEQIDNLQRVKQKLEKEKSEMKMEIDD 1237
Query: 849 ALHRELVLKQKMVILQDLLSTLIQASDSSWKGQLNEDKLKGKLRSLENQLYTCTQNYS-- 1022
V+ + L+ + TL + + +L +L + +L T + YS
Sbjct: 1238 LASNMEVISKSKGNLEKMCRTLEDQVSELKTKEEEQQRLINELTAQRGRLQTESGEYSRQ 1297
Query: 1023 -----------PRGMKKVILEMEDQKHSYEQ--KAKESLQKVLE----------EKMSAE 1133
RG + ++E+ K E+ KAK +L L+ E+ E
Sbjct: 1298 LDEKDSLVSQLSRGKQAFTQQIEELKRQLEEEIKAKSALAHALQSSRHDCDLLREQYEEE 1357
Query: 1134 QQLQST-QRSLALAEQKCEEWRSQYEALKEDWRTLGTQHRELESQLHVLQSKLQGADSRD 1310
Q+ ++ QR+++ A + +WR++YE + ELE L +LQ A+
Sbjct: 1358 QEAKAELQRAMSKANSEVAQWRTKYET------DAIQRTEELEEAKKKLAQRLQDAEEHV 1411
Query: 1311 LQMNQALRLLENEHQELQGKIARLQGD 1391
+N LE Q LQ ++ L D
Sbjct: 1412 EAVNAKCASLEKTKQRLQNEVEDLMID 1438
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 46,734,526
Number of extensions: 1411580
Number of successful extensions: 8136
Number of sequences better than 1.0e-05: 6
Number of HSP's gapped: 7978
Number of HSP's successfully gapped: 6
Length of query: 469
Length of database: 15,617,559
Length adjustment: 105
Effective length of query: 364
Effective length of database: 12,463,779
Effective search space: 4536815556
Effective search space used: 4536815556
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-004155
(1407 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_003132316.1| PREDICTED: sarcolemmal membrane-associated p... 116 3e-26
Alignment gi|XP_001926390.1| PREDICTED: early endosome antigen 1 [Sus scr... 54 2e-07
Alignment gi|XP_003122643.2| PREDICTED: coiled-coil domain-containing pro... 54 3e-07
Alignment gi|XP_003354586.1| PREDICTED: LOW QUALITY PROTEIN: e3 ubiquitin... 51 1e-06
Alignment gi|XP_003125957.2| PREDICTED: coiled-coil domain-containing pro... 50 3e-06
Alignment gi|XP_003130443.2| PREDICTED: centromere protein F, partial [Su... 50 4e-06
Alignment gi|NP_001001632.1| tropomyosin alpha-3 chain [Sus scrofa]. 49 5e-06
Alignment gi|XP_001929443.1| PREDICTED: centrosome-associated protein CEP... 49 7e-06
Alignment gi|XP_001927025.3| PREDICTED: golgin subfamily A member 3 [Sus ... 49 7e-06
Alignment gi|XP_003126629.1| PREDICTED: ELKS/Rab6-interacting/CAST family... 49 7e-06
>ref|XP_003132316.1| PREDICTED: sarcolemmal membrane-associated protein [Sus scrofa].
Length = 775
Score = 116 bits (291), Expect = 3e-26
Identities = 72/198 (36%), Positives = 119/198 (60%), Gaps = 1/198 (0%)
Frame = +3
Query: 801 AVLDKEIIQLSEYLKEALHRELVLKQKMVILQDLLSTLIQASDSSWKGQLNEDKLKGKLR 980
++ +E+ QLS+YL+EALHRE +L+QK+ LQ LL+ +ASD+SW+ ++ED+L +L
Sbjct: 159 SMYSQELFQLSQYLQEALHREQMLEQKLATLQRLLAITQEASDTSWQALIDEDRLLSRLE 218
Query: 981 SLENQLYTCTQNYSPRGMKKVILEMEDQKHSYEQKAKESLQKVLEEKMSAEQQLQSTQRS 1160
+ NQL C++N + ++K ++ +++ KH+YE AKESL++VL+EK+ ++L
Sbjct: 219 VMGNQLQACSKNQTEDSLRKELIALQEDKHNYETTAKESLRRVLQEKIDVVRKL------ 272
Query: 1161 LALAEQKCEEWRSQYEALK-EDWRTLGTQHRELESQLHVLQSKLQGADSRDLQMNQALRL 1337
S+ E L +D LG++ + E +Q K Q A+ ++LQ N +
Sbjct: 273 ------------SEVELLAFQDISNLGSRGIQEE-----IQQKGQ-AEKKELQHN--IDE 312
Query: 1338 LENEHQELQGKIARLQGD 1391
+E + QELQ KI LQ D
Sbjct: 313 MEEKEQELQAKIEALQAD 330
>ref|XP_001926390.1| PREDICTED: early endosome antigen 1 [Sus scrofa].
Length = 1410
Score = 54.3 bits (129), Expect = 2e-07
Identities = 52/215 (24%), Positives = 101/215 (46%), Gaps = 18/215 (8%)
Frame = +3
Query: 798 VAVLDKEIIQLSEYLKE-ALHRELVLKQKMVILQDLLSTLIQASDSSWKGQLNEDKLKG- 971
VAVL KE++Q+ + L RE ++ + L + + + + QL + KG
Sbjct: 222 VAVLKKELVQVQTLMDNMTLERERESEKLKDECKKLQAEYVNSEATI--SQLRSELAKGP 279
Query: 972 -----------KLRSLENQLYTCTQNYSPRGMKKVILEME-DQKHSYEQKAKESLQKVLE 1115
KL+S N+L QN + + KK + ++ ++KH+ E +K+++Q L
Sbjct: 280 QEVAVYVQELQKLKSSVNELTQKNQNLTEKLQKKELDYIQLEEKHNEECVSKKNIQASLH 339
Query: 1116 EKMSAEQQLQS----TQRSLALAEQKCEEWRSQYEALKEDWRTLGTQHRELESQLHVLQS 1283
+K QQLQS ++ SL + + E + LKE+ + T+H+ L+++ LQ
Sbjct: 340 QKDLDCQQLQSRLSASETSLQRIQAELGEKGEATQKLKEELSEVETKHQHLKAEFKQLQQ 399
Query: 1284 KLQGADSRDLQMNQALRLLENEHQELQGKIARLQG 1388
+ + + LQ+ + L ++ E + ++ G
Sbjct: 400 QREEKEQHGLQLQSEINQLHSKLLETERQLGEAHG 434
>ref|XP_003122643.2| PREDICTED: coiled-coil domain-containing protein 88B [Sus scrofa].
Length = 1465
Score = 53.5 bits (127), Expect = 3e-07
Identities = 44/161 (27%), Positives = 80/161 (49%)
Frame = +3
Query: 912 LIQASDSSWKGQLNEDKLKGKLRSLENQLYTCTQNYSPRGMKKVILEMEDQKHSYEQKAK 1091
LI+ S+ + L+G+L+ LE QL + R + ++ Q+HS +A+
Sbjct: 1167 LIEVERSNATLAAEKAALQGQLQHLEGQL----GSLQGRAQELLLQSQRAQEHSSRLQAE 1222
Query: 1092 ESLQKVLEEKMSAEQQLQSTQRSLALAEQKCEEWRSQYEALKEDWRTLGTQHRELESQLH 1271
+S+ ++ +++ ++L + + A + EE R Q +AL D L R E++L
Sbjct: 1223 KSVLEIQGQEL--HRKLGVLEEEVQAARRSQEETRGQQQALLRDHEALAQLQRRQEAELE 1280
Query: 1272 VLQSKLQGADSRDLQMNQALRLLENEHQELQGKIARLQGDK 1394
L ++ RDL+ N +R LE H+ELQG+ +LQ +
Sbjct: 1281 GLLAR-----HRDLKAN--MRALELAHRELQGRHEQLQAQR 1314
>ref|XP_003354586.1| PREDICTED: LOW QUALITY PROTEIN: e3 ubiquitin-protein ligase
BRE1B-like [Sus scrofa].
Length = 1021
Score = 51.2 bits (121), Expect = 1e-06
Identities = 64/311 (20%), Positives = 122/311 (39%), Gaps = 21/311 (6%)
Frame = +3
Query: 516 QAERSQTRQPGSSRAGQAPDLKEPWPWANRISSPGQQVSGTSAEVFPAQRH--------- 668
QAE ++ R S P L P +PG++ G S V P R
Sbjct: 512 QAEIAKLRAQASGSTHSIPTLGHPEDSGLSTPAPGKEEGGPSPVVAPDTRKEVASMPGTT 571
Query: 669 -PPSGARR------DSAVQKLPKQHRGTQTKAEETQPTTKNDASQQTNYGVAVLDKEIIQ 827
S A++ + Q L +G ++ E + K + ++ G+
Sbjct: 572 ITTSSAKKEDLGPPEEEAQALNPGAQGPSSRGREPEARPKRELREREGPGLGP-PSVASA 630
Query: 828 LSEYLKEALHRELVLKQKMVILQDLLSTLIQASDSSWKGQLNEDKLKGKLRSLENQLYTC 1007
LS +E E +++ +L+ L + L +A +S + +L D K + +++
Sbjct: 631 LSRADREKAKVEEAKRKESELLKGLRAELKKAQESQKEMKLLLDMYKSAPKEQRDKVQLM 690
Query: 1008 TQNYSPRGMKKVILEMEDQKHSYEQKAKESLQKVLEEK-----MSAEQQLQSTQRSLALA 1172
+ R K + E+ + E++ + +K+ +E AE+Q++ QR L
Sbjct: 691 A---AERKAKAEVDELRSRIRELEERDRRESKKIADEDALRRIRQAEEQIEHLQRKLGAT 747
Query: 1173 EQKCEEWRSQYEALKEDWRTLGTQHRELESQLHVLQSKLQGADSRDLQMNQALRLLENEH 1352
+Q+ E S+ + + + + Q+ L QL S ++ NQ L+LL E
Sbjct: 748 KQEEEALLSEMDVTGQAFEDMQEQNGRLLQQLREKDDANFKLMSERIKANQILKLLREEK 807
Query: 1353 QELQGKIARLQ 1385
EL ++ L+
Sbjct: 808 DELGEQVLGLK 818
>ref|XP_003125957.2| PREDICTED: coiled-coil domain-containing protein 18-like [Sus
scrofa].
Length = 896
Score = 50.1 bits (118), Expect = 3e-06
Identities = 58/242 (23%), Positives = 103/242 (42%), Gaps = 21/242 (8%)
Frame = +3
Query: 708 LPKQHRGTQTKAEE-----TQPTTKN---DASQQTNYGVAVLDKEIIQLS-------EYL 842
L Q+ TK E TQ K +++QQ V +L+++II L + L
Sbjct: 133 LVSQNHSLMTKIESVHFELTQSRAKVSMLESAQQQAANVPILEEQIINLEAEVSAQDKVL 192
Query: 843 KEALHRELVLKQKMVILQDLLSTLIQASDSSWKGQLNEDKLKGKL--RSLENQLYTCTQN 1016
+EA +L QKMVI ++ Q K L E +GK R LY
Sbjct: 193 REA-EDKLEQSQKMVIEKEQCLQKSQEECIRLKVDLLEQSKQGKRAERQRNEALYNAE-- 249
Query: 1017 YSPRGMKKVILEMEDQKHSYEQKAKESLQKVLEEKMSAEQQLQSTQRSLALAEQKCEEWR 1196
E+ Y++K E L+KV E+ E+ L + ++ ++KC ++
Sbjct: 250 -----------ELSKAFQHYKEKVAEKLEKVQAEEEILEKNLINCEKENKRLQEKCGLYK 298
Query: 1197 SQYEALKEDWRTLGTQHRELESQLHVLQSKL----QGADSRDLQMNQALRLLENEHQELQ 1364
S+ E LKE R + + + + +L ++ ++ + +++ + ++Q +LE EL
Sbjct: 299 SELEILKEKLRQVKLEMDQYKEELSKMEKEIMHLKRDGENKAMHLSQLDMVLEQTKTELD 358
Query: 1365 GK 1370
K
Sbjct: 359 KK 360
>ref|XP_003130443.2| PREDICTED: centromere protein F, partial [Sus scrofa].
Length = 3003
Score = 49.7 bits (117), Expect = 4e-06
Identities = 60/253 (23%), Positives = 110/253 (43%), Gaps = 17/253 (6%)
Frame = +3
Query: 687 RDSAVQKLPKQHRGTQTKA--EETQPTTKNDASQQTNYGVAVLDKEIIQLSEYLKEALHR 860
RD V+ L + + +K +E Q TTK +A + V L KE L+E L E+
Sbjct: 1791 RDQKVKSLLHEIKALDSKLSLQEAQLTTKIEACMELEKTVEELKKEKSDLNEKL-ESFSC 1849
Query: 861 ELVLKQKMVILQDLLSTLIQASDSSWKGQLNEDKLKGKLRSLENQLYTCTQNYSPR--GM 1034
+ Q++V L++L L K +E+ + T N+ R M
Sbjct: 1850 D---NQRVVERSGGLTSL----------DLEMGTDKPSCEVIEDDVAKVTDNWGERYFDM 1896
Query: 1035 KKVILEMEDQKHSYEQ---KAKESLQKVLEEKMSAEQQLQSTQRSLALAEQKCEEWRSQY 1205
+ ++ +K S E A+ L+ V EK+ E+ ++ Q+ + E++ +
Sbjct: 1897 NNELQRIKSEKGSTEHHALSAEADLEVVQTEKLYLEKDNENKQKVITCLEEELSVVTRER 1956
Query: 1206 EALKEDWRTLGTQHRELESQLHVLQSK---LQGADSRDLQMNQALRLLENEHQ------- 1355
+ L+ED TL +++EL+ ++ K L+ L + + L+ LE + Q
Sbjct: 1957 DRLREDLDTLSKENKELDQLSEKMKEKIGELESLQGERLHLQEQLQRLEEDSQALSLVRS 2016
Query: 1356 ELQGKIARLQGDK 1394
EL+ +I +L +K
Sbjct: 2017 ELENQIGQLNKEK 2029
>ref|NP_001001632.1| tropomyosin alpha-3 chain [Sus scrofa].
Length = 248
Score = 49.3 bits (116), Expect = 5e-06
Identities = 52/243 (21%), Positives = 104/243 (42%), Gaps = 9/243 (3%)
Frame = +3
Query: 699 VQKLPKQHRGTQTKAEETQPTTKND--ASQQTNYGVAVLDKEIIQLSEYLKEALHRELVL 872
+Q L +Q + +AE Q + + A +Q VA L++ I + E L A R
Sbjct: 14 IQVLQQQADDAEERAERLQREVEGERRAREQAEAEVASLNRRIQLVEEELDRAQERLATA 73
Query: 873 KQKMVILQDLLSTLIQASDSSWKGQLNEDKLKGKLRSLENQLYTCTQNYSPRGMKKVILE 1052
QK L +A+D S +G ++ +EN+ + M+ ++
Sbjct: 74 LQK-------LEEAEKAADESERG----------MKVIENRALKDEEK-----MELQEIQ 111
Query: 1053 MEDQKHSYEQKAKESLQKVLEEKMSAEQQLQSTQRSLALAEQKCEEWRSQYEALKEDWRT 1232
+++ KH E+ A ++V + + E L+ T+ LAE +C E Q + ++ +
Sbjct: 112 LKEAKHIAEE-ADRKYEEVARKLVIIEGDLERTEERAELAESRCREMDEQIRLMDQNLKC 170
Query: 1233 LGT-------QHRELESQLHVLQSKLQGADSRDLQMNQALRLLENEHQELQGKIARLQGD 1391
L + + E ++ +L KL+ A++R +++ LE +L+ K+ + +
Sbjct: 171 LSAAEEKYSQKEDKYEEEIKILTDKLKEAETRAEFAERSVAKLEKTIDDLEDKLKCTKEE 230
Query: 1392 KTC 1400
C
Sbjct: 231 HLC 233
>ref|XP_001929443.1| PREDICTED: centrosome-associated protein CEP250 isoform 1 [Sus
scrofa].
Length = 2440
Score = 48.9 bits (115), Expect = 7e-06
Identities = 62/244 (25%), Positives = 107/244 (43%), Gaps = 8/244 (3%)
Frame = +3
Query: 684 RRDSAVQKLPKQHRGTQTKAEETQPTTKNDASQQTNYGVAVLDKEIIQLSEYLKEALHRE 863
+ ++A +L RG Q + EE Q QQ V+V +++ Q ++ +E L RE
Sbjct: 672 KAEAARAELQADLRGVQEEKEEIQEKLSEAHHQQE--AVSVQMEQLRQEAKRQEEVLARE 729
Query: 864 LVLKQKMVILQDLLSTLIQASDSSWKGQLNEDKL--KGKLRSLENQLYTCTQNYS----P 1025
+ K+ +V + L +QA + + L+E L LEN L+ Q S
Sbjct: 730 VQEKEALVREKAALEVRLQAVERD-RQDLSEQLLGLSSAKELLENSLFEAQQQNSLIEVT 788
Query: 1026 RGMKKVILEMEDQKHSYEQKAKESLQKVLE-EKMSAEQQLQSTQRSLALAEQKCEEWRSQ 1202
+G +V ++ Q Q LQ L+ E+ AEQ+ + + LA AEQ+ + Q
Sbjct: 789 KGQLEVQIQTITQAKEVIQGEVRCLQLELDTERSRAEQERDAATKQLAQAEQEGQTALQQ 848
Query: 1203 YEALKEDWRTLGTQHR-ELESQLHVLQSKLQGADSRDLQMNQALRLLENEHQELQGKIAR 1379
++ E+ G Q + E E H ++++AL+ LE E EL+ ++
Sbjct: 849 QKSAHEE-EVKGLQEKWEKERAWH------------QQELDKALKSLEREKTELEMRLRE 895
Query: 1380 LQGD 1391
Q +
Sbjct: 896 QQAE 899
>ref|XP_001927025.3| PREDICTED: golgin subfamily A member 3 [Sus scrofa].
Length = 1426
Score = 48.9 bits (115), Expect = 7e-06
Identities = 64/247 (25%), Positives = 103/247 (41%), Gaps = 13/247 (5%)
Frame = +3
Query: 690 DSAVQKLPKQHRGTQTKAEETQPTTKNDASQQTNYGVAVLDKEIIQLSEYLKEALHRELV 869
D Q Q + Q + E T ++K ASQ EI L +++ ++L
Sbjct: 520 DLRQQMTALQSQLRQVQLERTALSSKLQASQA----------EISSLQS-VRQWYQQQLA 568
Query: 870 LKQKMVILQDLLSTLIQASDSSWKGQLNEDKLKGKLRSLENQLYTCTQNYSPRGMKKVIL 1049
L Q+ + IQ + G L KL+ SL +QL T TQ S + +++
Sbjct: 569 LAQEARVRLQGEMAHIQVGQMTQAGLLEHLKLENV--SLSHQL-TETQQRSIKEKERIAA 625
Query: 1050 EME-------DQKHSYEQ------KAKESLQKVLEEKMSAEQQLQSTQRSLALAEQKCEE 1190
+++ DQ+ ++ Q +E LQ+ LEE ++QLQ S+A EQ+ E+
Sbjct: 626 QLQGIEADMLDQEAAFVQIQEAKTMVEEDLQRRLEEFEDEKEQLQKMVASVATLEQQLEQ 685
Query: 1191 WRSQYEALKEDWRTLGTQHRELESQLHVLQSKLQGADSRDLQMNQALRLLENEHQELQGK 1370
+ + L +H +L Q Q LQ + QAL L ELQ +
Sbjct: 686 VKLTLHQRDQQLEALQQEHLDLLKQFTSTQENLQARE-------QALGDLRVRCDELQAR 738
Query: 1371 IARLQGD 1391
+ LQG+
Sbjct: 739 LDELQGE 745
>ref|XP_003126629.1| PREDICTED: ELKS/Rab6-interacting/CAST family member 1 isoform 2 [Sus
scrofa].
Length = 1116
Score = 48.9 bits (115), Expect = 7e-06
Identities = 54/214 (25%), Positives = 102/214 (47%), Gaps = 4/214 (1%)
Frame = +3
Query: 765 KNDASQQTNYGVAVLDKEIIQLSEYLKEALHRELVLKQKMV-ILQDLLSTLIQASDSSWK 941
KND ++ +A L++++ ++ + H+E V K+K +L++ +DSS +
Sbjct: 772 KNDKDKK----IAELERQVKDQNKKVANLKHKEQVEKKKSAQMLEEARRREDDLNDSSQQ 827
Query: 942 GQLNEDKLKGKLRSLENQLYTCTQNYSPRGMKKVILEMEDQKHSYEQKAKE---SLQKVL 1112
Q + K ++ LE L Q + R M V+ + E + + E++ +E +++KV
Sbjct: 828 LQDSLRKKDDRIEELEEALRESVQITAEREM--VLAQEESARTNAEKQVEELLMAMEKVK 885
Query: 1113 EEKMSAEQQLQSTQRSLALAEQKCEEWRSQYEALKEDWRTLGTQHRELESQLHVLQSKLQ 1292
+E S + +L STQ+SLA E R++ + + LE L + Q L
Sbjct: 886 QELESMKAKLSSTQQSLAEKETHLTNLRAE-------------RRKHLEEVLEMKQEALL 932
Query: 1293 GADSRDLQMNQALRLLENEHQELQGKIARLQGDK 1394
A S + N AL L + ++ Q ++A L+ +K
Sbjct: 933 AAIS-EKDANIALLELSSSKKKTQEEVAALKREK 965
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 35,336,979
Number of extensions: 1113010
Number of successful extensions: 6634
Number of sequences better than 1.0e-05: 10
Number of HSP's gapped: 6547
Number of HSP's successfully gapped: 10
Length of query: 469
Length of database: 11,343,932
Length adjustment: 103
Effective length of query: 366
Effective length of database: 8,779,541
Effective search space: 3213312006
Effective search space used: 3213312006
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-004155
(1407 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|GL892325.1| Sus scrofa unplaced genomic scaffold chrU_scaffol... 281 5e-73
>gb|GL892325.1| Sus scrofa unplaced genomic scaffold chrU_scaffold1200
Length = 32753
Score = 281 bits (142), Expect = 5e-73
Identities = 142/142 (100%)
Strand = Plus / Minus
Query: 2 gatcgcgccagcgagcaggagaggaactggggtgagcaagtgccgtggctgtggctgctt 61
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16783 gatcgcgccagcgagcaggagaggaactggggtgagcaagtgccgtggctgtggctgctt 16724
Query: 62 cctgtttcagcaaggcagctgcgtaaaaggcgagagaacctcgaagggaaatgctgaggg 121
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16723 cctgtttcagcaaggcagctgcgtaaaaggcgagagaacctcgaagggaaatgctgaggg 16664
Query: 122 gcccagagccacggactgagat 143
||||||||||||||||||||||
Sbjct: 16663 gcccagagccacggactgagat 16642
Score = 276 bits (139), Expect = 3e-71
Identities = 139/139 (100%)
Strand = Plus / Minus
Query: 361 ggcaggagacccgtgagagccgccgccgccgccccaacgtgaccacttgccgccaggtgg 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12715 ggcaggagacccgtgagagccgccgccgccgccccaacgtgaccacttgccgccaggtgg 12656
Query: 421 ggaaggcgctgaggacccagcagagggagcagttccagaaagcacgacagcagcagtttt 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12655 ggaaggcgctgaggacccagcagagggagcagttccagaaagcacgacagcagcagtttt 12596
Query: 481 tcagactgaggcacctgga 499
|||||||||||||||||||
Sbjct: 12595 tcagactgaggcacctgga 12577
Score = 216 bits (109), Expect = 2e-53
Identities = 109/109 (100%)
Strand = Plus / Minus
Query: 234 cagctattccaggaacgggaagccaacacaacaggtgctcaggaggtcatcatgctcagc 293
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12924 cagctattccaggaacgggaagccaacacaacaggtgctcaggaggtcatcatgctcagc 12865
Query: 294 ccagaccccaggcctgcccctggcttggcccggtgggctgagagctacg 342
|||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12864 ccagaccccaggcctgcccctggcttggcccggtgggctgagagctacg 12816
Score = 208 bits (105), Expect = 6e-51
Identities = 105/105 (100%)
Strand = Plus / Minus
Query: 525 cgctcgcagaccaggcagccaggttcctccagggcaggacaggcacctgacctcaaggag 584
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12476 cgctcgcagaccaggcagccaggttcctccagggcaggacaggcacctgacctcaaggag 12417
Query: 585 ccctggccttgggccaacaggatctcttcccctggacagcaggtg 629
|||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12416 ccctggccttgggccaacaggatctcttcccctggacagcaggtg 12372
Score = 192 bits (97), Expect = 4e-46
Identities = 97/97 (100%)
Strand = Plus / Minus
Query: 846 gaggccctgcacagggagctggttctgaaacagaagatggtgattctccaggacctgctc 905
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8893 gaggccctgcacagggagctggttctgaaacagaagatggtgattctccaggacctgctc 8834
Query: 906 tccactctgattcaggcttctgacagctcttggaagg 942
|||||||||||||||||||||||||||||||||||||
Sbjct: 8833 tccactctgattcaggcttctgacagctcttggaagg 8797
Score = 170 bits (86), Expect = 1e-39
Identities = 86/86 (100%)
Strand = Plus / Minus
Query: 642 gccgaggtctttccagcccagcggcatcctccctcgggcgcccggagagactctgccgtc 701
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9910 gccgaggtctttccagcccagcggcatcctccctcgggcgcccggagagactctgccgtc 9851
Query: 702 cagaagctgcccaaacagcaccgcgg 727
||||||||||||||||||||||||||
Sbjct: 9850 cagaagctgcccaaacagcaccgcgg 9825
Score = 147 bits (74), Expect = 2e-32
Identities = 74/74 (100%)
Strand = Plus / Minus
Query: 940 agggccagcttaatgaagacaaattgaagggcaaactgagatccttagaaaaccagctgt 999
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2531 agggccagcttaatgaagacaaattgaagggcaaactgagatccttagaaaaccagctgt 2472
Query: 1000 acacctgtacccag 1013
||||||||||||||
Sbjct: 2471 acacctgtacccag 2458
Score = 129 bits (65), Expect = 5e-27
Identities = 65/65 (100%)
Strand = Plus / Minus
Query: 726 ggcactcagacgaaggcagaagaaacacagccaacgactaagaacgatgccagccagcaa 785
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9689 ggcactcagacgaaggcagaagaaacacagccaacgactaagaacgatgccagccagcaa 9630
Query: 786 accaa 790
|||||
Sbjct: 9629 accaa 9625
Score = 89.7 bits (45), Expect = 4e-15
Identities = 45/45 (100%)
Strand = Plus / Minus
Query: 182 cgggatgctttcctgagctgctggcgctgcagccggggacccgag 226
|||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16541 cgggatgctttcctgagctgctggcgctgcagccggggacccgag 16497
Score = 65.9 bits (33), Expect = 6e-08
Identities = 33/33 (100%)
Strand = Plus / Minus
Query: 814 aggaaatcatccagctttctgagtacctcaaag 846
|||||||||||||||||||||||||||||||||
Sbjct: 9013 aggaaatcatccagctttctgagtacctcaaag 8981
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 41,606,390
Number of extensions: 388
Number of successful extensions: 388
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 388
Number of HSP's successfully gapped: 10
Length of query: 1407
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1386
Effective length of database: 2,808,413,156
Effective search space: 3892460634216
Effective search space used: 3892460634216
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)