Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-004159
(967 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001030432.1| synaptojanin-2-binding protein [Bos taurus]. 268 4e-72
Alignment gi|XP_002684901.1| PREDICTED: discs, large homolog 1 (Drosophil... 88 1e-17
Alignment gi|XP_001787543.1| PREDICTED: discs, large homolog 1 (Drosophil... 88 1e-17
Alignment gi|NP_001178236.1| disks large homolog 4 [Bos taurus]. 86 5e-17
Alignment gi|XP_002699096.1| PREDICTED: chapsyn-110-like [Bos taurus]. 86 5e-17
Alignment gi|XP_002695828.1| PREDICTED: disks large homolog 4-like [Bos t... 86 5e-17
Alignment gi|XP_581662.3| PREDICTED: discs, large homolog 2 (Drosophila) ... 84 2e-16
Alignment gi|NP_001179165.1| disks large homolog 3 [Bos taurus]. 83 3e-16
Alignment gi|XP_002700072.1| PREDICTED: discs, large homolog 3 (Drosophil... 83 3e-16
Alignment gi|NP_001179820.2| multiple PDZ domain protein [Bos taurus]. 74 2e-13
>ref|NP_001030432.1| synaptojanin-2-binding protein [Bos taurus].
Length = 145
Score = 268 bits (686), Expect = 4e-72
Identities = 133/144 (92%), Positives = 138/144 (95%)
Frame = +2
Query: 116 MNGRVDYLVTEEEISLTRGPSGLGFNIVGGTDQQYVSNDSGIFVSRIKENGAAALDGRLQ 295
MNGRVDYLVTEEEI+LTRGPSGLGFNIVGGTDQQYVSNDSGIFVSRIKENGAAALDGRLQ
Sbjct: 1 MNGRVDYLVTEEEINLTRGPSGLGFNIVGGTDQQYVSNDSGIFVSRIKENGAAALDGRLQ 60
Query: 296 EGDKILSVNGQDLKNLLHQDAVDLFRNAGYTVSLRVQHRSQVQNGPVGHQGDGEPSGIPI 475
EGDKILSVNGQDLKNLLHQDAVDLFRNAGY VSLRVQHR QVQNGP+G QG+GEPSGIPI
Sbjct: 61 EGDKILSVNGQDLKNLLHQDAVDLFRNAGYAVSLRVQHRLQVQNGPIGPQGEGEPSGIPI 120
Query: 476 TVVLVPVFALIMVAAWAFMRYRHQ 547
+VLVPVFAL MVAAWAFMRYR +
Sbjct: 121 AMVLVPVFALTMVAAWAFMRYRQR 144
>ref|XP_002684901.1| PREDICTED: discs, large homolog 1 (Drosophila) [Bos taurus].
Length = 914
Score = 87.8 bits (216), Expect = 1e-17
Identities = 45/91 (49%), Positives = 61/91 (67%)
Frame = +2
Query: 149 EEISLTRGPSGLGFNIVGGTDQQYVSNDSGIFVSRIKENGAAALDGRLQEGDKILSVNGQ 328
EEI+L RG SGLGF+I GGTD ++ +DS IF+++I GAAA DGRL+ D IL VN
Sbjct: 223 EEITLERGNSGLGFSIAGGTDNPHIGDDSSIFITKIIAGGAAAQDGRLRVNDCILRVNEI 282
Query: 329 DLKNLLHQDAVDLFRNAGYTVSLRVQHRSQV 421
D++++ H AV+ + AG V L V+ R V
Sbjct: 283 DVRDVTHSKAVEALKEAGSIVRLYVKRRKPV 313
Score = 75.1 bits (183), Expect = 9e-14
Identities = 48/129 (37%), Positives = 70/129 (54%), Gaps = 4/129 (3%)
Frame = +2
Query: 44 PADFHLPRHELLLLQVGKPDKQ*NMNGRV--DYLVTEE--EISLTRGPSGLGFNIVGGTD 211
P D H+ L+ P + ++ V D +T E ++ L RG +GLGFNIVGG D
Sbjct: 416 PIDNHVSPPSYLVQTPASPARYSPVSKAVLGDDEITREPRKVVLHRGSTGLGFNIVGGED 475
Query: 212 QQYVSNDSGIFVSRIKENGAAALDGRLQEGDKILSVNGQDLKNLLHQDAVDLFRNAGYTV 391
+ GIF+S I G A L G L++GD+I+SVN DL+ H+ A +NAG V
Sbjct: 476 GE------GIFISFILAGGPADLSGELRKGDRIISVNSVDLRTASHEQAAAALKNAGQAV 529
Query: 392 SLRVQHRSQ 418
++ Q+R +
Sbjct: 530 TIVAQYRPE 538
>ref|XP_001787543.1| PREDICTED: discs, large homolog 1 (Drosophila) [Bos taurus].
Length = 808
Score = 87.8 bits (216), Expect = 1e-17
Identities = 45/91 (49%), Positives = 61/91 (67%)
Frame = +2
Query: 149 EEISLTRGPSGLGFNIVGGTDQQYVSNDSGIFVSRIKENGAAALDGRLQEGDKILSVNGQ 328
EEI+L RG SGLGF+I GGTD ++ +DS IF+++I GAAA DGRL+ D IL VN
Sbjct: 223 EEITLERGNSGLGFSIAGGTDNPHIGDDSSIFITKIIAGGAAAQDGRLRVNDCILRVNEI 282
Query: 329 DLKNLLHQDAVDLFRNAGYTVSLRVQHRSQV 421
D++++ H AV+ + AG V L V+ R V
Sbjct: 283 DVRDVTHSKAVEALKEAGSIVRLYVKRRKPV 313
Score = 75.1 bits (183), Expect = 9e-14
Identities = 48/129 (37%), Positives = 70/129 (54%), Gaps = 4/129 (3%)
Frame = +2
Query: 44 PADFHLPRHELLLLQVGKPDKQ*NMNGRV--DYLVTEE--EISLTRGPSGLGFNIVGGTD 211
P D H+ L+ P + ++ V D +T E ++ L RG +GLGFNIVGG D
Sbjct: 416 PIDNHVSPPSYLVQTPASPARYSPVSKAVLGDDEITREPRKVVLHRGSTGLGFNIVGGED 475
Query: 212 QQYVSNDSGIFVSRIKENGAAALDGRLQEGDKILSVNGQDLKNLLHQDAVDLFRNAGYTV 391
+ GIF+S I G A L G L++GD+I+SVN DL+ H+ A +NAG V
Sbjct: 476 GE------GIFISFILAGGPADLSGELRKGDRIISVNSVDLRTASHEQAAAALKNAGQAV 529
Query: 392 SLRVQHRSQ 418
++ Q+R +
Sbjct: 530 TIVAQYRPE 538
>ref|NP_001178236.1| disks large homolog 4 [Bos taurus].
Length = 721
Score = 85.9 bits (211), Expect = 5e-17
Identities = 42/84 (50%), Positives = 58/84 (69%)
Frame = +2
Query: 152 EISLTRGPSGLGFNIVGGTDQQYVSNDSGIFVSRIKENGAAALDGRLQEGDKILSVNGQD 331
EI L +GP GLGF+I GG Q++ D+ I+V++I E GAA DGRLQ GDKIL+VN
Sbjct: 157 EIKLIKGPKGLGFSIAGGVGNQHIPGDNSIYVTKIIEGGAAHKDGRLQIGDKILAVNSVG 216
Query: 332 LKNLLHQDAVDLFRNAGYTVSLRV 403
L++++H+DAV +N V L+V
Sbjct: 217 LEDVMHEDAVAALKNTYDVVYLKV 240
Score = 85.1 bits (209), Expect = 8e-17
Identities = 45/97 (46%), Positives = 61/97 (62%)
Frame = +2
Query: 122 GRVDYLVTEEEISLTRGPSGLGFNIVGGTDQQYVSNDSGIFVSRIKENGAAALDGRLQEG 301
G ++Y EEI+L RG SGLGF+I GGTD ++ +D IF+++I GAAA DGRL+
Sbjct: 56 GEMEY----EEITLERGNSGLGFSIAGGTDNPHIGDDPSIFITKIIPGGAAAQDGRLRVN 111
Query: 302 DKILSVNGQDLKNLLHQDAVDLFRNAGYTVSLRVQHR 412
D IL VN D++ + H AV+ + AG V L V R
Sbjct: 112 DSILFVNEVDVREVTHSAAVEALKEAGSIVRLYVMRR 148
Score = 79.3 bits (194), Expect = 5e-15
Identities = 44/99 (44%), Positives = 59/99 (59%)
Frame = +2
Query: 122 GRVDYLVTEEEISLTRGPSGLGFNIVGGTDQQYVSNDSGIFVSRIKENGAAALDGRLQEG 301
G D I + RG +GLGFNIVGG D + GIF+S I G A L G L++G
Sbjct: 300 GEEDVPREPRRIVIHRGSTGLGFNIVGGEDGE------GIFISFILAGGPADLSGELRKG 353
Query: 302 DKILSVNGQDLKNLLHQDAVDLFRNAGYTVSLRVQHRSQ 418
D+ILSVNG DL+N H+ A +NAG TV++ Q++ +
Sbjct: 354 DQILSVNGVDLRNASHEQAAIALKNAGQTVTIIAQYKPE 392
>ref|XP_002699096.1| PREDICTED: chapsyn-110-like [Bos taurus].
Length = 687
Score = 85.9 bits (211), Expect = 5e-17
Identities = 44/91 (48%), Positives = 59/91 (64%)
Frame = +2
Query: 149 EEISLTRGPSGLGFNIVGGTDQQYVSNDSGIFVSRIKENGAAALDGRLQEGDKILSVNGQ 328
EEI+L RG SGLGF+I GGTD ++ +D GIF+++I GAAA DGRL+ D IL VN
Sbjct: 166 EEITLERGNSGLGFSIAGGTDNPHIGDDPGIFITKIIPGGAAAEDGRLRVNDCILRVNEV 225
Query: 329 DLKNLLHQDAVDLFRNAGYTVSLRVQHRSQV 421
D+ + H AV+ + AG V L V+ R +
Sbjct: 226 DVSEVSHSKAVEALKEAGSIVRLYVRRRRPI 256
Score = 83.6 bits (205), Expect = 2e-16
Identities = 40/89 (44%), Positives = 58/89 (65%)
Frame = +2
Query: 137 LVTEEEISLTRGPSGLGFNIVGGTDQQYVSNDSGIFVSRIKENGAAALDGRLQEGDKILS 316
L T EI L +GP GLGF+I GG Q++ D+ I+V++I + GAA DGRLQ GD++L
Sbjct: 257 LETVVEIKLFKGPKGLGFSIAGGVGNQHIPGDNSIYVTKIIDGGAAQKDGRLQVGDRLLM 316
Query: 317 VNGQDLKNLLHQDAVDLFRNAGYTVSLRV 403
VN L+ + H++AV + +N V L+V
Sbjct: 317 VNNYSLEEVTHEEAVAILKNTSDVVYLKV 345
Score = 75.1 bits (183), Expect = 9e-14
Identities = 41/89 (46%), Positives = 55/89 (61%)
Frame = +2
Query: 152 EISLTRGPSGLGFNIVGGTDQQYVSNDSGIFVSRIKENGAAALDGRLQEGDKILSVNGQD 331
++ L +G +GLGFNIVGG D + GIFVS I G A L G LQ GD+ILSVNG D
Sbjct: 490 KVVLHKGSTGLGFNIVGGEDGE------GIFVSFILAGGPADLSGELQRGDQILSVNGID 543
Query: 332 LKNLLHQDAVDLFRNAGYTVSLRVQHRSQ 418
L+ H+ A + AG TV++ Q++ +
Sbjct: 544 LRGASHEQAAAALKGAGQTVTIIAQYQPE 572
>ref|XP_002695828.1| PREDICTED: disks large homolog 4-like [Bos taurus].
Length = 721
Score = 85.9 bits (211), Expect = 5e-17
Identities = 42/84 (50%), Positives = 58/84 (69%)
Frame = +2
Query: 152 EISLTRGPSGLGFNIVGGTDQQYVSNDSGIFVSRIKENGAAALDGRLQEGDKILSVNGQD 331
EI L +GP GLGF+I GG Q++ D+ I+V++I E GAA DGRLQ GDKIL+VN
Sbjct: 157 EIKLIKGPKGLGFSIAGGVGNQHIPGDNSIYVTKIIEGGAAHKDGRLQIGDKILAVNSVG 216
Query: 332 LKNLLHQDAVDLFRNAGYTVSLRV 403
L++++H+DAV +N V L+V
Sbjct: 217 LEDVMHEDAVAALKNTYDVVYLKV 240
Score = 85.1 bits (209), Expect = 8e-17
Identities = 45/97 (46%), Positives = 61/97 (62%)
Frame = +2
Query: 122 GRVDYLVTEEEISLTRGPSGLGFNIVGGTDQQYVSNDSGIFVSRIKENGAAALDGRLQEG 301
G ++Y EEI+L RG SGLGF+I GGTD ++ +D IF+++I GAAA DGRL+
Sbjct: 56 GEMEY----EEITLERGNSGLGFSIAGGTDNPHIGDDPSIFITKIIPGGAAAQDGRLRVN 111
Query: 302 DKILSVNGQDLKNLLHQDAVDLFRNAGYTVSLRVQHR 412
D IL VN D++ + H AV+ + AG V L V R
Sbjct: 112 DSILFVNEVDVREVTHSAAVEALKEAGSIVRLYVMRR 148
Score = 79.3 bits (194), Expect = 5e-15
Identities = 44/99 (44%), Positives = 59/99 (59%)
Frame = +2
Query: 122 GRVDYLVTEEEISLTRGPSGLGFNIVGGTDQQYVSNDSGIFVSRIKENGAAALDGRLQEG 301
G D I + RG +GLGFNIVGG D + GIF+S I G A L G L++G
Sbjct: 300 GEEDVPREPRRIVIHRGSTGLGFNIVGGEDGE------GIFISFILAGGPADLSGELRKG 353
Query: 302 DKILSVNGQDLKNLLHQDAVDLFRNAGYTVSLRVQHRSQ 418
D+ILSVNG DL+N H+ A +NAG TV++ Q++ +
Sbjct: 354 DQILSVNGVDLRNASHEQAAIALKNAGQTVTIIAQYKPE 392
>ref|XP_581662.3| PREDICTED: discs, large homolog 2 (Drosophila) isoform 1, partial
[Bos taurus].
Length = 767
Score = 83.6 bits (205), Expect = 2e-16
Identities = 40/89 (44%), Positives = 58/89 (65%)
Frame = +2
Query: 137 LVTEEEISLTRGPSGLGFNIVGGTDQQYVSNDSGIFVSRIKENGAAALDGRLQEGDKILS 316
L T EI L +GP GLGF+I GG Q++ D+ I+V++I + GAA DGRLQ GD++L
Sbjct: 85 LETVVEIKLFKGPKGLGFSIAGGVGNQHIPGDNSIYVTKIIDGGAAQKDGRLQVGDRLLM 144
Query: 317 VNGQDLKNLLHQDAVDLFRNAGYTVSLRV 403
VN L+ + H++AV + +N V L+V
Sbjct: 145 VNNYSLEEVTHEEAVAILKNTSDVVYLKV 173
Score = 77.0 bits (188), Expect = 2e-14
Identities = 39/84 (46%), Positives = 53/84 (63%)
Frame = +2
Query: 170 GPSGLGFNIVGGTDQQYVSNDSGIFVSRIKENGAAALDGRLQEGDKILSVNGQDLKNLLH 349
G SGLGF+I GGTD ++ +D GIF+++I GAAA DGRL+ D IL VN D+ + H
Sbjct: 1 GNSGLGFSIAGGTDNPHIGDDPGIFITKIIPGGAAAEDGRLRVNDCILRVNEVDVSEVSH 60
Query: 350 QDAVDLFRNAGYTVSLRVQHRSQV 421
AV+ + AG V L V+ R +
Sbjct: 61 SKAVEALKEAGSIVRLYVRRRRPI 84
Score = 75.1 bits (183), Expect = 9e-14
Identities = 41/89 (46%), Positives = 55/89 (61%)
Frame = +2
Query: 152 EISLTRGPSGLGFNIVGGTDQQYVSNDSGIFVSRIKENGAAALDGRLQEGDKILSVNGQD 331
++ L +G +GLGFNIVGG D + GIFVS I G A L G LQ GD+ILSVNG D
Sbjct: 318 KVVLHKGSTGLGFNIVGGEDGE------GIFVSFILAGGPADLSGELQRGDQILSVNGID 371
Query: 332 LKNLLHQDAVDLFRNAGYTVSLRVQHRSQ 418
L+ H+ A + AG TV++ Q++ +
Sbjct: 372 LRGASHEQAAAALKGAGQTVTIIAQYQPE 400
>ref|NP_001179165.1| disks large homolog 3 [Bos taurus].
Length = 817
Score = 83.2 bits (204), Expect = 3e-16
Identities = 44/94 (46%), Positives = 59/94 (62%)
Frame = +2
Query: 131 DYLVTEEEISLTRGPSGLGFNIVGGTDQQYVSNDSGIFVSRIKENGAAALDGRLQEGDKI 310
D + EEI L RG SGLGF+I GG D +V +D GIF+++I GAAA+DGRL D +
Sbjct: 124 DGMFKYEEIVLERGNSGLGFSIAGGIDNPHVPDDPGIFITKIIPGGAAAMDGRLGVNDCV 183
Query: 311 LSVNGQDLKNLLHQDAVDLFRNAGYTVSLRVQHR 412
L VN D+ ++H AV+ + AG V L V+ R
Sbjct: 184 LRVNEVDVSEVVHSRAVEALKEAGPVVRLVVRRR 217
Score = 82.0 bits (201), Expect = 7e-16
Identities = 37/84 (44%), Positives = 59/84 (70%)
Frame = +2
Query: 152 EISLTRGPSGLGFNIVGGTDQQYVSNDSGIFVSRIKENGAAALDGRLQEGDKILSVNGQD 331
E++L +GP GLGF+I GG Q++ D+ I++++I E GAA DGRLQ GD++L+VN +
Sbjct: 226 EVNLLKGPKGLGFSIAGGIGNQHIPGDNSIYITKIIEGGAAQKDGRLQIGDRLLAVNNTN 285
Query: 332 LKNLLHQDAVDLFRNAGYTVSLRV 403
L+++ H++AV +N V L+V
Sbjct: 286 LQDVRHEEAVASLKNTSDMVYLKV 309
Score = 77.4 bits (189), Expect = 2e-14
Identities = 49/127 (38%), Positives = 67/127 (52%), Gaps = 1/127 (0%)
Frame = +2
Query: 41 PPADFH-LPRHELLLLQVGKPDKQ*NMNGRVDYLVTEEEISLTRGPSGLGFNIVGGTDQQ 217
PPA + +PRH L D+ +I L +G +GLGFNIVGG D +
Sbjct: 363 PPARYSPIPRHML---------------AEEDFTREPRKIILHKGSTGLGFNIVGGEDGE 407
Query: 218 YVSNDSGIFVSRIKENGAAALDGRLQEGDKILSVNGQDLKNLLHQDAVDLFRNAGYTVSL 397
GIFVS I G A L G L+ GD+ILSVNG +L+N H+ A + AG +V++
Sbjct: 408 ------GIFVSFILAGGPADLSGELRRGDRILSVNGVNLRNATHEQAAAALKRAGQSVTI 461
Query: 398 RVQHRSQ 418
Q+R +
Sbjct: 462 VAQYRPE 468
>ref|XP_002700072.1| PREDICTED: discs, large homolog 3 (Drosophila) [Bos taurus].
Length = 817
Score = 83.2 bits (204), Expect = 3e-16
Identities = 44/94 (46%), Positives = 59/94 (62%)
Frame = +2
Query: 131 DYLVTEEEISLTRGPSGLGFNIVGGTDQQYVSNDSGIFVSRIKENGAAALDGRLQEGDKI 310
D + EEI L RG SGLGF+I GG D +V +D GIF+++I GAAA+DGRL D +
Sbjct: 124 DGMFKYEEIVLERGNSGLGFSIAGGIDNPHVPDDPGIFITKIIPGGAAAMDGRLGVNDCV 183
Query: 311 LSVNGQDLKNLLHQDAVDLFRNAGYTVSLRVQHR 412
L VN D+ ++H AV+ + AG V L V+ R
Sbjct: 184 LRVNEVDVSEVVHSRAVEALKEAGPVVRLVVRRR 217
Score = 82.0 bits (201), Expect = 7e-16
Identities = 37/84 (44%), Positives = 59/84 (70%)
Frame = +2
Query: 152 EISLTRGPSGLGFNIVGGTDQQYVSNDSGIFVSRIKENGAAALDGRLQEGDKILSVNGQD 331
E++L +GP GLGF+I GG Q++ D+ I++++I E GAA DGRLQ GD++L+VN +
Sbjct: 226 EVNLLKGPKGLGFSIAGGIGNQHIPGDNSIYITKIIEGGAAQKDGRLQIGDRLLAVNNTN 285
Query: 332 LKNLLHQDAVDLFRNAGYTVSLRV 403
L+++ H++AV +N V L+V
Sbjct: 286 LQDVRHEEAVASLKNTSDMVYLKV 309
Score = 77.4 bits (189), Expect = 2e-14
Identities = 49/127 (38%), Positives = 67/127 (52%), Gaps = 1/127 (0%)
Frame = +2
Query: 41 PPADFH-LPRHELLLLQVGKPDKQ*NMNGRVDYLVTEEEISLTRGPSGLGFNIVGGTDQQ 217
PPA + +PRH L D+ +I L +G +GLGFNIVGG D +
Sbjct: 363 PPARYSPIPRHML---------------AEEDFTREPRKIILHKGSTGLGFNIVGGEDGE 407
Query: 218 YVSNDSGIFVSRIKENGAAALDGRLQEGDKILSVNGQDLKNLLHQDAVDLFRNAGYTVSL 397
GIFVS I G A L G L+ GD+ILSVNG +L+N H+ A + AG +V++
Sbjct: 408 ------GIFVSFILAGGPADLSGELRRGDRILSVNGVNLRNATHEQAAAALKRAGQSVTI 461
Query: 398 RVQHRSQ 418
Q+R +
Sbjct: 462 VAQYRPE 468
>ref|NP_001179820.2| multiple PDZ domain protein [Bos taurus].
Length = 2070
Score = 73.9 bits (180), Expect = 2e-13
Identities = 38/85 (44%), Positives = 56/85 (65%)
Frame = +2
Query: 149 EEISLTRGPSGLGFNIVGGTDQQYVSNDSGIFVSRIKENGAAALDGRLQEGDKILSVNGQ 328
+ I+L RGP GLGF+IVGG + D I+V + GAA+ DGRL+ GD+I++VNGQ
Sbjct: 1986 KSITLDRGPDGLGFSIVGGYGSPH--GDLPIYVKTVFAKGAASEDGRLKRGDQIIAVNGQ 2043
Query: 329 DLKNLLHQDAVDLFRNAGYTVSLRV 403
L+ + H++AV + + TV+L V
Sbjct: 2044 SLEGVTHEEAVAILKRTKGTVTLMV 2068
Score = 64.3 bits (155), Expect = 2e-10
Identities = 34/84 (40%), Positives = 48/84 (57%)
Frame = +2
Query: 146 EEEISLTRGPSGLGFNIVGGTDQQYVSNDSGIFVSRIKENGAAALDGRLQEGDKILSVNG 325
E I +++G +GLG +IVGG+D I + + E GAA DGRL GD+IL VNG
Sbjct: 1627 ETTIEISKGRTGLGLSIVGGSDTLL----GAIIIHEVYEEGAACKDGRLWAGDQILEVNG 1682
Query: 326 QDLKNLLHQDAVDLFRNAGYTVSL 397
DL+ H +A+++ R V L
Sbjct: 1683 IDLRKATHDEAINVLRQTPQRVRL 1706
Score = 63.5 bits (153), Expect = 3e-10
Identities = 33/89 (37%), Positives = 54/89 (60%)
Frame = +2
Query: 152 EISLTRGPSGLGFNIVGGTDQQYVSNDSGIFVSRIKENGAAALDGRLQEGDKILSVNGQD 331
++ LT+ GLG I G + + SGIFV I ++ A DGR+Q GD+I++V+G +
Sbjct: 377 DVELTKNVQGLGITIAGYIGDKKLE-PSGIFVKSITKSSAVEHDGRIQIGDQIIAVDGTN 435
Query: 332 LKNLLHQDAVDLFRNAGYTVSLRVQHRSQ 418
L+ +Q AV++ R+ G TV L + R++
Sbjct: 436 LQGFTNQQAVEVLRHTGQTVHLTLMRRTK 464
Score = 58.9 bits (141), Expect = 6e-09
Identities = 36/94 (38%), Positives = 56/94 (59%), Gaps = 1/94 (1%)
Frame = +2
Query: 155 ISLTRGPS-GLGFNIVGGTDQQYVSNDSGIFVSRIKENGAAALDGRLQEGDKILSVNGQD 331
+ L + P GLG +IVG ND+G+FVS + + G A DGRL +GD+IL+VNG+D
Sbjct: 1726 VELQKKPGKGLGLSIVGKR------NDTGVFVSDVVKGGIADADGRLLQGDQILTVNGED 1779
Query: 332 LKNLLHQDAVDLFRNAGYTVSLRVQHRSQVQNGP 433
+++ + L + + TV+L V +V+ GP
Sbjct: 1780 VRHATQEAVAALLKCSLGTVTLEV---GRVKTGP 1810
Score = 58.5 bits (140), Expect = 8e-09
Identities = 37/94 (39%), Positives = 53/94 (56%), Gaps = 2/94 (2%)
Frame = +2
Query: 149 EEISLTRGP-SGLGFNIVGGTDQQYVSNDSGIFVSRIKENGAAALDGRLQEGDKILSVNG 325
E L + P GLGF++VG + + GIFV I+E A DGRL+E D+IL++NG
Sbjct: 136 EVFDLLKPPCGGLGFSVVGLRSEN--RGELGIFVQEIQEGSVAHRDGRLKETDQILAING 193
Query: 326 QDL-KNLLHQDAVDLFRNAGYTVSLRVQHRSQVQ 424
Q L + + HQ A+ + + A TV L + S Q
Sbjct: 194 QALDQTITHQQAISILQKAKDTVQLVIARGSLPQ 227
Score = 56.6 bits (135), Expect = 3e-08
Identities = 35/89 (39%), Positives = 50/89 (56%), Gaps = 5/89 (5%)
Frame = +2
Query: 155 ISLTRGPS-GLGFNIVGGTDQ-QYVSNDS---GIFVSRIKENGAAALDGRLQEGDKILSV 319
+ L R PS LG +IVGG +SN GIF+ + E+ A +G L+ GD+I+ V
Sbjct: 1152 VELWREPSKSLGISIVGGRGMGSRLSNGEVMRGIFIKHVLEDSPAGKNGTLKPGDRIVEV 1211
Query: 320 NGQDLKNLLHQDAVDLFRNAGYTVSLRVQ 406
+G DL++ H+ AV+ R AG V VQ
Sbjct: 1212 DGMDLRDASHEQAVEAIRKAGNPVVFLVQ 1240
Score = 55.8 bits (133), Expect = 5e-08
Identities = 31/81 (38%), Positives = 46/81 (56%)
Frame = +2
Query: 155 ISLTRGPSGLGFNIVGGTDQQYVSNDSGIFVSRIKENGAAALDGRLQEGDKILSVNGQDL 334
I L +G SGLG ++ G D+ +S +F+ I NGAA DG+LQ D++L +NGQ L
Sbjct: 1351 IELEKGRSGLGLSLAGNKDRSRMS----VFIVGIDPNGAAGKDGQLQIADELLEINGQIL 1406
Query: 335 KNLLHQDAVDLFRNAGYTVSL 397
HQ+A + + A V +
Sbjct: 1407 YGRSHQNASSIIKCAPSKVKI 1427
Score = 53.1 bits (126), Expect = 4e-07
Identities = 32/109 (29%), Positives = 57/109 (52%), Gaps = 1/109 (0%)
Frame = +2
Query: 155 ISLTRGPS-GLGFNIVGGTDQQYVSNDSGIFVSRIKENGAAALDGRLQEGDKILSVNGQD 331
+ + +GP+ LG +I GG D IF++ + NG AA +L+ GD+I+++ G
Sbjct: 1863 VEIKKGPTDSLGISIAGGVGSPL--GDVPIFIAMMHPNGVAAQTQKLRVGDRIVTICGTS 1920
Query: 332 LKNLLHQDAVDLFRNAGYTVSLRVQHRSQVQNGPVGHQGDGEPSGIPIT 478
+ + H AV+L +NA ++ ++V V + GHQ + S + T
Sbjct: 1921 TEGMTHTQAVNLLKNASGSIEMQVVAGGDV-SVVTGHQQEPASSSLSFT 1968
Score = 48.9 bits (115), Expect = 7e-06
Identities = 30/85 (35%), Positives = 37/85 (43%)
Frame = +2
Query: 149 EEISLTRGPSGLGFNIVGGTDQQYVSNDSGIFVSRIKENGAAALDGRLQEGDKILSVNGQ 328
E I L SGLGF IVGG +G+ V I G A GRL GD IL +
Sbjct: 256 ETIELVNDGSGLGFGIVGG-------KATGVIVKTILPGGVADQHGRLCSGDHILKIGDT 308
Query: 329 DLKNLLHQDAVDLFRNAGYTVSLRV 403
DL + + + R G V L +
Sbjct: 309 DLAGMSSEQVAQVLRQCGNRVKLMI 333
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 38,242,285
Number of extensions: 1056998
Number of successful extensions: 4158
Number of sequences better than 1.0e-05: 79
Number of HSP's gapped: 4056
Number of HSP's successfully gapped: 146
Length of query: 322
Length of database: 17,681,374
Length adjustment: 102
Effective length of query: 220
Effective length of database: 14,306,398
Effective search space: 3147407560
Effective search space used: 3147407560
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-004159
(967 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_547879.1| PREDICTED: similar to Synaptojanin 2 binding pr... 264 1e-70
Alignment gi|XP_545159.2| PREDICTED: similar to synapse-associated protei... 88 1e-17
Alignment gi|XP_546580.2| PREDICTED: similar to postsynaptic density prot... 86 5e-17
Alignment gi|XP_549062.2| PREDICTED: similar to synapse-associated protei... 84 3e-16
Alignment gi|XP_856788.1| PREDICTED: similar to synapse-associated protei... 84 3e-16
Alignment gi|XP_542276.2| PREDICTED: similar to Channel associated protei... 84 3e-16
Alignment gi|XP_856747.1| PREDICTED: similar to synapse-associated protei... 75 7e-14
Alignment gi|XP_531935.2| PREDICTED: similar to multiple PDZ domain prote... 74 2e-13
Alignment gi|XP_860817.1| PREDICTED: similar to interleukin 16 isoform 2 ... 72 6e-13
Alignment gi|XP_860788.1| PREDICTED: similar to interleukin 16 isoform 3 ... 72 6e-13
>ref|XP_547879.1| PREDICTED: similar to Synaptojanin 2 binding protein (Mitochondrial
outer membrane protein 25) [Canis familiaris].
Length = 145
Score = 264 bits (674), Expect = 1e-70
Identities = 128/144 (88%), Positives = 138/144 (95%)
Frame = +2
Query: 116 MNGRVDYLVTEEEISLTRGPSGLGFNIVGGTDQQYVSNDSGIFVSRIKENGAAALDGRLQ 295
MNGRVDYLVTEEEI+LTRGPSGLGFNIVGGTDQQYVSNDSGI+VSRIKENGAAALDGRLQ
Sbjct: 1 MNGRVDYLVTEEEINLTRGPSGLGFNIVGGTDQQYVSNDSGIYVSRIKENGAAALDGRLQ 60
Query: 296 EGDKILSVNGQDLKNLLHQDAVDLFRNAGYTVSLRVQHRSQVQNGPVGHQGDGEPSGIPI 475
EGDKILSVNGQDL+NLLHQDAVDLFRNAGY VSLRVQHR QVQNGP+GH+ +GEPSGIPI
Sbjct: 61 EGDKILSVNGQDLRNLLHQDAVDLFRNAGYAVSLRVQHRVQVQNGPLGHRSEGEPSGIPI 120
Query: 476 TVVLVPVFALIMVAAWAFMRYRHQ 547
+VLVPVFAL ++AAWAFM+YR Q
Sbjct: 121 ALVLVPVFALTVIAAWAFMKYRQQ 144
>ref|XP_545159.2| PREDICTED: similar to synapse-associated protein 97 [Canis
familiaris].
Length = 927
Score = 88.2 bits (217), Expect = 1e-17
Identities = 45/91 (49%), Positives = 61/91 (67%)
Frame = +2
Query: 149 EEISLTRGPSGLGFNIVGGTDQQYVSNDSGIFVSRIKENGAAALDGRLQEGDKILSVNGQ 328
EEI+L RG SGLGF+I GGTD ++ +DS IF+++I GAAA DGRL+ D IL VN
Sbjct: 223 EEITLERGNSGLGFSIAGGTDNPHIGDDSSIFITKIIAGGAAAQDGRLRVNDCILRVNEV 282
Query: 329 DLKNLLHQDAVDLFRNAGYTVSLRVQHRSQV 421
D++++ H AV+ + AG V L V+ R V
Sbjct: 283 DVRDVTHSKAVEALKEAGSIVRLYVKRRKPV 313
Score = 80.9 bits (198), Expect = 2e-15
Identities = 39/84 (46%), Positives = 56/84 (66%)
Frame = +2
Query: 152 EISLTRGPSGLGFNIVGGTDQQYVSNDSGIFVSRIKENGAAALDGRLQEGDKILSVNGQD 331
EI L +GP GLGF+I GG Q++ D+ I+V++I E GAA DG+LQ GDK+L+VN
Sbjct: 319 EIKLIKGPKGLGFSIAGGVGNQHIPGDNSIYVTKIIEGGAAHKDGKLQIGDKLLAVNSVC 378
Query: 332 LKNLLHQDAVDLFRNAGYTVSLRV 403
L+ + H++AV +N V L+V
Sbjct: 379 LEEVTHEEAVTALKNTSDFVYLKV 402
Score = 74.3 bits (181), Expect = 2e-13
Identities = 39/89 (43%), Positives = 55/89 (61%)
Frame = +2
Query: 152 EISLTRGPSGLGFNIVGGTDQQYVSNDSGIFVSRIKENGAAALDGRLQEGDKILSVNGQD 331
++ L RG +GLGFNIVGG D + GIF+S I G A L G L++GD+I+SVN D
Sbjct: 466 KVVLHRGSTGLGFNIVGGEDGE------GIFISFILAGGPADLSGELRKGDRIISVNSVD 519
Query: 332 LKNLLHQDAVDLFRNAGYTVSLRVQHRSQ 418
L+ H+ A +NAG V++ Q+R +
Sbjct: 520 LRTASHEQAAAALKNAGQAVTIVAQYRPE 548
>ref|XP_546580.2| PREDICTED: similar to postsynaptic density protein 95 [Canis
familiaris].
Length = 760
Score = 85.9 bits (211), Expect = 5e-17
Identities = 42/84 (50%), Positives = 58/84 (69%)
Frame = +2
Query: 152 EISLTRGPSGLGFNIVGGTDQQYVSNDSGIFVSRIKENGAAALDGRLQEGDKILSVNGQD 331
EI L +GP GLGF+I GG Q++ D+ I+V++I E GAA DGRLQ GDKIL+VN
Sbjct: 202 EIKLIKGPKGLGFSIAGGVGNQHIPGDNSIYVTKIIEGGAAHKDGRLQIGDKILAVNSVG 261
Query: 332 LKNLLHQDAVDLFRNAGYTVSLRV 403
L++++H+DAV +N V L+V
Sbjct: 262 LEDVMHEDAVAALKNTYDVVYLKV 285
Score = 85.1 bits (209), Expect = 9e-17
Identities = 45/97 (46%), Positives = 61/97 (62%)
Frame = +2
Query: 122 GRVDYLVTEEEISLTRGPSGLGFNIVGGTDQQYVSNDSGIFVSRIKENGAAALDGRLQEG 301
G ++Y EEI+L RG SGLGF+I GGTD ++ +D IF+++I GAAA DGRL+
Sbjct: 101 GEMEY----EEITLERGNSGLGFSIAGGTDNPHIGDDPSIFITKIIPGGAAAQDGRLRVN 156
Query: 302 DKILSVNGQDLKNLLHQDAVDLFRNAGYTVSLRVQHR 412
D IL VN D++ + H AV+ + AG V L V R
Sbjct: 157 DSILFVNEVDVREVTHSAAVEALKEAGSIVRLYVMRR 193
Score = 77.4 bits (189), Expect = 2e-14
Identities = 43/99 (43%), Positives = 59/99 (59%)
Frame = +2
Query: 122 GRVDYLVTEEEISLTRGPSGLGFNIVGGTDQQYVSNDSGIFVSRIKENGAAALDGRLQEG 301
G D I + RG +GLGFNIVGG D + GIF+S I G A L G L++G
Sbjct: 345 GEEDIPREPRRIVIHRGSTGLGFNIVGGEDGE------GIFISFILAGGPADLSGELRKG 398
Query: 302 DKILSVNGQDLKNLLHQDAVDLFRNAGYTVSLRVQHRSQ 418
D+ILSVNG DL++ H+ A +NAG TV++ Q++ +
Sbjct: 399 DQILSVNGVDLRSASHEQAAIALKNAGQTVTIIAQYKPE 437
>ref|XP_549062.2| PREDICTED: similar to synapse-associated protein 102 isoform 1
[Canis familiaris].
Length = 849
Score = 83.6 bits (205), Expect = 3e-16
Identities = 46/100 (46%), Positives = 63/100 (63%)
Frame = +2
Query: 113 NMNGRVDYLVTEEEISLTRGPSGLGFNIVGGTDQQYVSNDSGIFVSRIKENGAAALDGRL 292
++NG D + EEI L RG SGLGF+I GG D +V +D GIF+++I GAAA+DGRL
Sbjct: 137 SVNGS-DGMFKYEEIVLERGNSGLGFSIAGGIDNPHVPDDPGIFITKIIPGGAAAMDGRL 195
Query: 293 QEGDKILSVNGQDLKNLLHQDAVDLFRNAGYTVSLRVQHR 412
D +L VN D+ ++H AV+ + AG V L V+ R
Sbjct: 196 GVNDCVLRVNEVDVSEVVHSRAVEALKEAGPVVRLVVRRR 235
Score = 82.0 bits (201), Expect = 8e-16
Identities = 37/84 (44%), Positives = 59/84 (70%)
Frame = +2
Query: 152 EISLTRGPSGLGFNIVGGTDQQYVSNDSGIFVSRIKENGAAALDGRLQEGDKILSVNGQD 331
E++L +GP GLGF+I GG Q++ D+ I++++I E GAA DGRLQ GD++L+VN +
Sbjct: 244 EVNLLKGPKGLGFSIAGGIGNQHIPGDNSIYITKIIEGGAAQKDGRLQIGDRLLAVNNTN 303
Query: 332 LKNLLHQDAVDLFRNAGYTVSLRV 403
L+++ H++AV +N V L+V
Sbjct: 304 LQDVRHEEAVASLKNTSDMVYLKV 327
Score = 77.0 bits (188), Expect = 2e-14
Identities = 49/127 (38%), Positives = 67/127 (52%), Gaps = 1/127 (0%)
Frame = +2
Query: 41 PPADFH-LPRHELLLLQVGKPDKQ*NMNGRVDYLVTEEEISLTRGPSGLGFNIVGGTDQQ 217
PPA + +PRH L D+ +I L +G +GLGFNIVGG D +
Sbjct: 381 PPARYSPIPRHLL---------------AEEDFTREPRKIILHKGSTGLGFNIVGGEDGE 425
Query: 218 YVSNDSGIFVSRIKENGAAALDGRLQEGDKILSVNGQDLKNLLHQDAVDLFRNAGYTVSL 397
GIFVS I G A L G L+ GD+ILSVNG +L+N H+ A + AG +V++
Sbjct: 426 ------GIFVSFILAGGPADLSGELRRGDRILSVNGVNLRNATHEQAAAALKRAGQSVTI 479
Query: 398 RVQHRSQ 418
Q+R +
Sbjct: 480 VAQYRPE 486
>ref|XP_856788.1| PREDICTED: similar to synapse-associated protein 102 isoform 5
[Canis familiaris].
Length = 849
Score = 83.6 bits (205), Expect = 3e-16
Identities = 46/100 (46%), Positives = 63/100 (63%)
Frame = +2
Query: 113 NMNGRVDYLVTEEEISLTRGPSGLGFNIVGGTDQQYVSNDSGIFVSRIKENGAAALDGRL 292
++NG D + EEI L RG SGLGF+I GG D +V +D GIF+++I GAAA+DGRL
Sbjct: 137 SVNGS-DGMFKYEEIVLERGNSGLGFSIAGGIDNPHVPDDPGIFITKIIPGGAAAMDGRL 195
Query: 293 QEGDKILSVNGQDLKNLLHQDAVDLFRNAGYTVSLRVQHR 412
D +L VN D+ ++H AV+ + AG V L V+ R
Sbjct: 196 GVNDCVLRVNEVDVSEVVHSRAVEALKEAGPVVRLVVRRR 235
Score = 82.0 bits (201), Expect = 8e-16
Identities = 37/84 (44%), Positives = 59/84 (70%)
Frame = +2
Query: 152 EISLTRGPSGLGFNIVGGTDQQYVSNDSGIFVSRIKENGAAALDGRLQEGDKILSVNGQD 331
E++L +GP GLGF+I GG Q++ D+ I++++I E GAA DGRLQ GD++L+VN +
Sbjct: 244 EVNLLKGPKGLGFSIAGGIGNQHIPGDNSIYITKIIEGGAAQKDGRLQIGDRLLAVNNTN 303
Query: 332 LKNLLHQDAVDLFRNAGYTVSLRV 403
L+++ H++AV +N V L+V
Sbjct: 304 LQDVRHEEAVASLKNTSDMVYLKV 327
Score = 77.0 bits (188), Expect = 2e-14
Identities = 49/127 (38%), Positives = 67/127 (52%), Gaps = 1/127 (0%)
Frame = +2
Query: 41 PPADFH-LPRHELLLLQVGKPDKQ*NMNGRVDYLVTEEEISLTRGPSGLGFNIVGGTDQQ 217
PPA + +PRH L D+ +I L +G +GLGFNIVGG D +
Sbjct: 381 PPARYSPIPRHLL---------------AEEDFTREPRKIILHKGSTGLGFNIVGGEDGE 425
Query: 218 YVSNDSGIFVSRIKENGAAALDGRLQEGDKILSVNGQDLKNLLHQDAVDLFRNAGYTVSL 397
GIFVS I G A L G L+ GD+ILSVNG +L+N H+ A + AG +V++
Sbjct: 426 ------GIFVSFILAGGPADLSGELRRGDRILSVNGVNLRNATHEQAAAALKRAGQSVTI 479
Query: 398 RVQHRSQ 418
Q+R +
Sbjct: 480 VAQYRPE 486
>ref|XP_542276.2| PREDICTED: similar to Channel associated protein of synapse-110
(Chapsyn-110) (Discs, large homolog 2) [Canis
familiaris].
Length = 901
Score = 83.6 bits (205), Expect = 3e-16
Identities = 40/89 (44%), Positives = 58/89 (65%)
Frame = +2
Query: 137 LVTEEEISLTRGPSGLGFNIVGGTDQQYVSNDSGIFVSRIKENGAAALDGRLQEGDKILS 316
L T EI L +GP GLGF+I GG Q++ D+ I+V++I + GAA DGRLQ GD++L
Sbjct: 219 LETVVEIKLFKGPKGLGFSIAGGVGNQHIPGDNSIYVTKIIDGGAAQKDGRLQVGDRLLM 278
Query: 317 VNGQDLKNLLHQDAVDLFRNAGYTVSLRV 403
VN L+ + H++AV + +N V L+V
Sbjct: 279 VNNYSLEEVTHEEAVAILKNTSDVVYLKV 307
Score = 77.4 bits (189), Expect = 2e-14
Identities = 39/85 (45%), Positives = 54/85 (63%)
Frame = +2
Query: 167 RGPSGLGFNIVGGTDQQYVSNDSGIFVSRIKENGAAALDGRLQEGDKILSVNGQDLKNLL 346
+G SGLGF+I GGTD ++ +D GIF+++I GAAA DGRL+ D IL VN D+ +
Sbjct: 134 QGNSGLGFSIAGGTDNPHIGDDPGIFITKIIPGGAAAEDGRLRVNDCILRVNEVDVSEVS 193
Query: 347 HQDAVDLFRNAGYTVSLRVQHRSQV 421
H AV+ + AG V L V+ R +
Sbjct: 194 HSKAVEALKEAGSIVRLYVRRRRPI 218
Score = 75.1 bits (183), Expect = 9e-14
Identities = 41/89 (46%), Positives = 55/89 (61%)
Frame = +2
Query: 152 EISLTRGPSGLGFNIVGGTDQQYVSNDSGIFVSRIKENGAAALDGRLQEGDKILSVNGQD 331
++ L +G +GLGFNIVGG D + GIFVS I G A L G LQ GD+ILSVNG D
Sbjct: 452 KVVLHKGSTGLGFNIVGGEDGE------GIFVSFILAGGPADLSGELQRGDQILSVNGID 505
Query: 332 LKNLLHQDAVDLFRNAGYTVSLRVQHRSQ 418
L+ H+ A + AG TV++ Q++ +
Sbjct: 506 LRGASHEQAAAALKGAGQTVTIIAQYQPE 534
>ref|XP_856747.1| PREDICTED: similar to synapse-associated protein 102 isoform 4
[Canis familiaris].
Length = 510
Score = 75.5 bits (184), Expect = 7e-14
Identities = 41/89 (46%), Positives = 56/89 (62%)
Frame = +2
Query: 152 EISLTRGPSGLGFNIVGGTDQQYVSNDSGIFVSRIKENGAAALDGRLQEGDKILSVNGQD 331
+I L +G +GLGFNIVGG D + GIFVS I G A L G L+ GD+ILSVNG +
Sbjct: 47 KIILHKGSTGLGFNIVGGEDGE------GIFVSFILAGGPADLSGELRRGDRILSVNGVN 100
Query: 332 LKNLLHQDAVDLFRNAGYTVSLRVQHRSQ 418
L+N H+ A + AG +V++ Q+R +
Sbjct: 101 LRNATHEQAAAALKRAGQSVTIVAQYRPE 129
>ref|XP_531935.2| PREDICTED: similar to multiple PDZ domain protein [Canis familiaris].
Length = 2114
Score = 73.9 bits (180), Expect = 2e-13
Identities = 38/85 (44%), Positives = 56/85 (65%)
Frame = +2
Query: 149 EEISLTRGPSGLGFNIVGGTDQQYVSNDSGIFVSRIKENGAAALDGRLQEGDKILSVNGQ 328
+ I+L RGP GLGF+IVGG + D I+V + GAA+ DGRL+ GD+I++VNGQ
Sbjct: 2030 KSITLDRGPDGLGFSIVGGYGSPH--GDLPIYVKTVFAKGAASEDGRLKRGDQIIAVNGQ 2087
Query: 329 DLKNLLHQDAVDLFRNAGYTVSLRV 403
L+ + H++AV + + TV+L V
Sbjct: 2088 SLEGVTHEEAVAILKRTKGTVTLMV 2112
Score = 64.3 bits (155), Expect = 2e-10
Identities = 34/84 (40%), Positives = 48/84 (57%)
Frame = +2
Query: 146 EEEISLTRGPSGLGFNIVGGTDQQYVSNDSGIFVSRIKENGAAALDGRLQEGDKILSVNG 325
E I +++G +GLG +IVGG+D I + + E GAA DGRL GD+IL VNG
Sbjct: 1671 ETTIEISKGRTGLGLSIVGGSDTLL----GAIIIHEVYEEGAACKDGRLWAGDQILEVNG 1726
Query: 326 QDLKNLLHQDAVDLFRNAGYTVSL 397
DL+ H +A+++ R V L
Sbjct: 1727 IDLRKATHDEAINVLRQTPQRVRL 1750
Score = 63.2 bits (152), Expect = 4e-10
Identities = 35/100 (35%), Positives = 56/100 (56%)
Frame = +2
Query: 152 EISLTRGPSGLGFNIVGGTDQQYVSNDSGIFVSRIKENGAAALDGRLQEGDKILSVNGQD 331
++ LT+ GLG I G + + SGIFV I ++ A DGR+Q GD+I++V+G +
Sbjct: 420 DVELTKNVQGLGITIAGYIGDKKLE-PSGIFVKSITKSSAVEHDGRIQIGDQIIAVDGTN 478
Query: 332 LKNLLHQDAVDLFRNAGYTVSLRVQHRSQVQNGPVGHQGD 451
L+ +Q AV++ R+ G TV L + R Q + + D
Sbjct: 479 LQGFTNQQAVEVLRHTGPTVHLTLMRRGVKQEAELTSRED 518
Score = 60.5 bits (145), Expect = 2e-09
Identities = 38/94 (40%), Positives = 56/94 (59%), Gaps = 1/94 (1%)
Frame = +2
Query: 155 ISLTRGPS-GLGFNIVGGTDQQYVSNDSGIFVSRIKENGAAALDGRLQEGDKILSVNGQD 331
I L + P GLG +IVG ND+G+FVS I + G A DGRL +GD+IL+VNG+D
Sbjct: 1770 IELQKKPGKGLGLSIVGKR------NDTGVFVSDIVKGGIADADGRLVQGDQILTVNGED 1823
Query: 332 LKNLLHQDAVDLFRNAGYTVSLRVQHRSQVQNGP 433
++N + L + + TV+L V +++ GP
Sbjct: 1824 VRNATQEAVAALLKCSLGTVTLEV---GRIKAGP 1854
Score = 57.8 bits (138), Expect = 2e-08
Identities = 33/81 (40%), Positives = 46/81 (56%)
Frame = +2
Query: 155 ISLTRGPSGLGFNIVGGTDQQYVSNDSGIFVSRIKENGAAALDGRLQEGDKILSVNGQDL 334
I L +G SGLG ++ G D+ +S +FV I NGAA DGRLQ D++L +NGQ L
Sbjct: 1395 IELEKGRSGLGLSLAGNKDRSRMS----VFVVGIDPNGAAGKDGRLQIADELLEINGQIL 1450
Query: 335 KNLLHQDAVDLFRNAGYTVSL 397
HQ+A + + A V +
Sbjct: 1451 YGRSHQNASSIIKCAPSKVKI 1471
Score = 56.6 bits (135), Expect = 3e-08
Identities = 36/94 (38%), Positives = 52/94 (55%), Gaps = 2/94 (2%)
Frame = +2
Query: 149 EEISLTRGP-SGLGFNIVGGTDQQYVSNDSGIFVSRIKENGAAALDGRLQEGDKILSVNG 325
E L + P GLGF++VG + + GIFV I+E A DGRL+E D+IL++NG
Sbjct: 179 EVFELLKPPCGGLGFSVVGLRSEN--RGELGIFVQEIQEGSVAHRDGRLKETDQILAING 236
Query: 326 QDL-KNLLHQDAVDLFRNAGYTVSLRVQHRSQVQ 424
Q L + + HQ A+ + + A V L + S Q
Sbjct: 237 QALDQTITHQQAISILQKAKDNVQLVIARGSLPQ 270
Score = 55.8 bits (133), Expect = 6e-08
Identities = 34/89 (38%), Positives = 50/89 (56%), Gaps = 5/89 (5%)
Frame = +2
Query: 155 ISLTRGPS-GLGFNIVGGTDQ-QYVSNDS---GIFVSRIKENGAAALDGRLQEGDKILSV 319
+ L R PS LG +IVGG +SN GIF+ + ++ A +G L+ GD+I+ V
Sbjct: 1196 VELWREPSKSLGISIVGGRGMGSRLSNGEVMRGIFIKHVLDDSPAGKNGTLKPGDRIVEV 1255
Query: 320 NGQDLKNLLHQDAVDLFRNAGYTVSLRVQ 406
+G DL++ H+ AV+ R AG V VQ
Sbjct: 1256 DGMDLRDASHEQAVEAIRKAGNPVVFMVQ 1284
Score = 52.8 bits (125), Expect = 5e-07
Identities = 32/111 (28%), Positives = 58/111 (52%), Gaps = 1/111 (0%)
Frame = +2
Query: 155 ISLTRGPS-GLGFNIVGGTDQQYVSNDSGIFVSRIKENGAAALDGRLQEGDKILSVNGQD 331
+ + +GP+ LG +I GG D IF++ + NG AA +L+ GD+I+++ G
Sbjct: 1907 VEIKKGPADSLGISIAGGVGSPL--GDVPIFIAMMHPNGVAAQTQKLRVGDRIVTICGTS 1964
Query: 332 LKNLLHQDAVDLFRNAGYTVSLRVQHRSQVQNGPVGHQGDGEPSGIPITVV 484
+ + H AV+L +NA ++ ++V V + GHQ + S + T +
Sbjct: 1965 TEGMTHTQAVNLLKNAPGSIEMQVVAGGDV-SVVTGHQQEPASSSLSFTAL 2014
Score = 49.3 bits (116), Expect = 5e-06
Identities = 35/111 (31%), Positives = 43/111 (38%), Gaps = 3/111 (2%)
Frame = +2
Query: 149 EEISLTRGPSGLGFNIVGGTDQQYVSNDSGIFVSRIKENGAAALDGRLQEGDKILSVNGQ 328
E I L SGLGF IVGG +G+ V I G A GRL GD IL +
Sbjct: 299 ETIELVNDGSGLGFGIVGG-------KATGVIVKTILPGGVADQHGRLCSGDHILKIGDT 351
Query: 329 DLKNLLHQDAVDLFRNAGYTVSLRVQH---RSQVQNGPVGHQGDGEPSGIP 472
DL + + + R G V L + +G PS IP
Sbjct: 352 DLAGMSSEQVAQVLRQCGNRVKLMIARGAIEEPAAPNSLGITLSSSPSSIP 402
>ref|XP_860817.1| PREDICTED: similar to interleukin 16 isoform 2 isoform 4 [Canis
familiaris].
Length = 1283
Score = 72.4 bits (176), Expect = 6e-13
Identities = 43/106 (40%), Positives = 57/106 (53%)
Frame = +2
Query: 62 PRHELLLLQVGKPDKQ*NMNGRVDYLVTEEEISLTRGPSGLGFNIVGGTDQQYVSNDSGI 241
P L Q+ +P +G + V + + GLGF+IVGG D Y GI
Sbjct: 188 PTRSLSTAQLAQP------SGGLQASVISNIVLMKGQAKGLGFSIVGGRDSIY--GPIGI 239
Query: 242 FVSRIKENGAAALDGRLQEGDKILSVNGQDLKNLLHQDAVDLFRNA 379
+V I GAAA DGRLQEGD+IL +NG+ + L HQDA+ F+ A
Sbjct: 240 YVKTIFAGGAAAADGRLQEGDEILELNGESMAGLTHQDALQKFKQA 285
Score = 56.6 bits (135), Expect = 3e-08
Identities = 27/68 (39%), Positives = 44/68 (64%)
Frame = +2
Query: 176 SGLGFNIVGGTDQQYVSNDSGIFVSRIKENGAAALDGRLQEGDKILSVNGQDLKNLLHQD 355
+GLGF++ GG D + + I V R+ NG A+ +G +Q+G+++LS+NG+ LK H D
Sbjct: 1074 AGLGFSLAGGADLE----NKVITVHRVFPNGLASQEGTIQKGNEVLSINGKSLKGATHND 1129
Query: 356 AVDLFRNA 379
A+ + R A
Sbjct: 1130 ALAILRQA 1137
>ref|XP_860788.1| PREDICTED: similar to interleukin 16 isoform 3 [Canis familiaris].
Length = 1335
Score = 72.4 bits (176), Expect = 6e-13
Identities = 43/106 (40%), Positives = 57/106 (53%)
Frame = +2
Query: 62 PRHELLLLQVGKPDKQ*NMNGRVDYLVTEEEISLTRGPSGLGFNIVGGTDQQYVSNDSGI 241
P L Q+ +P +G + V + + GLGF+IVGG D Y GI
Sbjct: 188 PTRSLSTAQLAQP------SGGLQASVISNIVLMKGQAKGLGFSIVGGRDSIY--GPIGI 239
Query: 242 FVSRIKENGAAALDGRLQEGDKILSVNGQDLKNLLHQDAVDLFRNA 379
+V I GAAA DGRLQEGD+IL +NG+ + L HQDA+ F+ A
Sbjct: 240 YVKTIFAGGAAAADGRLQEGDEILELNGESMAGLTHQDALQKFKQA 285
Score = 56.6 bits (135), Expect = 3e-08
Identities = 27/68 (39%), Positives = 44/68 (64%)
Frame = +2
Query: 176 SGLGFNIVGGTDQQYVSNDSGIFVSRIKENGAAALDGRLQEGDKILSVNGQDLKNLLHQD 355
+GLGF++ GG D + + I V R+ NG A+ +G +Q+G+++LS+NG+ LK H D
Sbjct: 1120 AGLGFSLAGGADLE----NKVITVHRVFPNGLASQEGTIQKGNEVLSINGKSLKGATHND 1175
Query: 356 AVDLFRNA 379
A+ + R A
Sbjct: 1176 ALAILRQA 1183
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 39,924,275
Number of extensions: 1092973
Number of successful extensions: 4140
Number of sequences better than 1.0e-05: 62
Number of HSP's gapped: 4073
Number of HSP's successfully gapped: 123
Length of query: 322
Length of database: 18,874,504
Length adjustment: 103
Effective length of query: 219
Effective length of database: 15,440,896
Effective search space: 3381556224
Effective search space used: 3381556224
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-004159
(967 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_060843.2| synaptojanin-2-binding protein [Homo sapiens]. 269 2e-72
Alignment gi|NP_001189476.1| SYNJ2BP-COX16 protein isoform 1 [Homo sapien... 246 2e-65
Alignment gi|NP_001189477.1| SYNJ2BP-COX16 protein isoform 2 [Homo sapien... 196 3e-50
Alignment gi|NP_001189478.1| SYNJ2BP-COX16 protein isoform 3 [Homo sapien... 193 2e-49
Alignment gi|NP_001191317.1| disks large homolog 1 isoform 5 [Homo sapien... 88 1e-17
Alignment gi|NP_001191316.1| disks large homolog 1 isoform 4 [Homo sapien... 88 1e-17
Alignment gi|NP_001191315.1| disks large homolog 1 isoform 3 [Homo sapien... 88 1e-17
Alignment gi|NP_001091894.1| disks large homolog 1 isoform 1 [Homo sapien... 88 1e-17
Alignment gi|NP_004078.2| disks large homolog 1 isoform 2 [Homo sapiens]. 88 1e-17
Alignment gi|NP_001136172.1| disks large homolog 2 isoform 3 [Homo sapien... 86 5e-17
>ref|NP_060843.2| synaptojanin-2-binding protein [Homo sapiens].
Length = 145
Score = 269 bits (688), Expect = 2e-72
Identities = 132/144 (91%), Positives = 139/144 (96%)
Frame = +2
Query: 116 MNGRVDYLVTEEEISLTRGPSGLGFNIVGGTDQQYVSNDSGIFVSRIKENGAAALDGRLQ 295
MNGRVDYLVTEEEI+LTRGPSGLGFNIVGGTDQQYVSNDSGI+VSRIKENGAAALDGRLQ
Sbjct: 1 MNGRVDYLVTEEEINLTRGPSGLGFNIVGGTDQQYVSNDSGIYVSRIKENGAAALDGRLQ 60
Query: 296 EGDKILSVNGQDLKNLLHQDAVDLFRNAGYTVSLRVQHRSQVQNGPVGHQGDGEPSGIPI 475
EGDKILSVNGQDLKNLLHQDAVDLFRNAGY VSLRVQHR QVQNGP+GH+G+G+PSGIPI
Sbjct: 61 EGDKILSVNGQDLKNLLHQDAVDLFRNAGYAVSLRVQHRLQVQNGPIGHRGEGDPSGIPI 120
Query: 476 TVVLVPVFALIMVAAWAFMRYRHQ 547
+VLVPVFAL MVAAWAFMRYR Q
Sbjct: 121 FMVLVPVFALTMVAAWAFMRYRQQ 144
>ref|NP_001189476.1| SYNJ2BP-COX16 protein isoform 1 [Homo sapiens].
Length = 191
Score = 246 bits (629), Expect = 2e-65
Identities = 121/133 (90%), Positives = 129/133 (96%)
Frame = +2
Query: 116 MNGRVDYLVTEEEISLTRGPSGLGFNIVGGTDQQYVSNDSGIFVSRIKENGAAALDGRLQ 295
MNGRVDYLVTEEEI+LTRGPSGLGFNIVGGTDQQYVSNDSGI+VSRIKENGAAALDGRLQ
Sbjct: 1 MNGRVDYLVTEEEINLTRGPSGLGFNIVGGTDQQYVSNDSGIYVSRIKENGAAALDGRLQ 60
Query: 296 EGDKILSVNGQDLKNLLHQDAVDLFRNAGYTVSLRVQHRSQVQNGPVGHQGDGEPSGIPI 475
EGDKILSVNGQDLKNLLHQDAVDLFRNAGY VSLRVQHR QVQNGP+GH+G+G+PSGIPI
Sbjct: 61 EGDKILSVNGQDLKNLLHQDAVDLFRNAGYAVSLRVQHRLQVQNGPIGHRGEGDPSGIPI 120
Query: 476 TVVLVPVFALIMV 514
+VLVPVFAL M+
Sbjct: 121 FMVLVPVFALTMM 133
>ref|NP_001189477.1| SYNJ2BP-COX16 protein isoform 2 [Homo sapiens].
Length = 182
Score = 196 bits (498), Expect = 3e-50
Identities = 98/108 (90%), Positives = 101/108 (93%)
Frame = +2
Query: 116 MNGRVDYLVTEEEISLTRGPSGLGFNIVGGTDQQYVSNDSGIFVSRIKENGAAALDGRLQ 295
MNGRVDYLVTEEEI+LTRGPSGLGFNIVGGTDQQYVSNDSGI+VSRIKENGAAALDGRLQ
Sbjct: 1 MNGRVDYLVTEEEINLTRGPSGLGFNIVGGTDQQYVSNDSGIYVSRIKENGAAALDGRLQ 60
Query: 296 EGDKILSVNGQDLKNLLHQDAVDLFRNAGYTVSLRVQHRSQVQNGPVG 439
EGDKILSVNGQDLKNLLHQDAVDLFRNAGY VSLRVQHR + G G
Sbjct: 61 EGDKILSVNGQDLKNLLHQDAVDLFRNAGYAVSLRVQHRLLIVGGSFG 108
>ref|NP_001189478.1| SYNJ2BP-COX16 protein isoform 3 [Homo sapiens].
Length = 158
Score = 193 bits (491), Expect = 2e-49
Identities = 96/99 (96%), Positives = 98/99 (98%)
Frame = +2
Query: 116 MNGRVDYLVTEEEISLTRGPSGLGFNIVGGTDQQYVSNDSGIFVSRIKENGAAALDGRLQ 295
MNGRVDYLVTEEEI+LTRGPSGLGFNIVGGTDQQYVSNDSGI+VSRIKENGAAALDGRLQ
Sbjct: 1 MNGRVDYLVTEEEINLTRGPSGLGFNIVGGTDQQYVSNDSGIYVSRIKENGAAALDGRLQ 60
Query: 296 EGDKILSVNGQDLKNLLHQDAVDLFRNAGYTVSLRVQHR 412
EGDKILSVNGQDLKNLLHQDAVDLFRNAGY VSLRVQHR
Sbjct: 61 EGDKILSVNGQDLKNLLHQDAVDLFRNAGYAVSLRVQHR 99
>ref|NP_001191317.1| disks large homolog 1 isoform 5 [Homo sapiens].
Length = 788
Score = 88.2 bits (217), Expect = 1e-17
Identities = 45/91 (49%), Positives = 61/91 (67%)
Frame = +2
Query: 149 EEISLTRGPSGLGFNIVGGTDQQYVSNDSGIFVSRIKENGAAALDGRLQEGDKILSVNGQ 328
EEI+L RG SGLGF+I GGTD ++ +DS IF+++I GAAA DGRL+ D IL VN
Sbjct: 107 EEITLERGNSGLGFSIAGGTDNPHIGDDSSIFITKIITGGAAAQDGRLRVNDCILRVNEV 166
Query: 329 DLKNLLHQDAVDLFRNAGYTVSLRVQHRSQV 421
D++++ H AV+ + AG V L V+ R V
Sbjct: 167 DVRDVTHSKAVEALKEAGSIVRLYVKRRKPV 197
Score = 80.9 bits (198), Expect = 2e-15
Identities = 39/84 (46%), Positives = 56/84 (66%)
Frame = +2
Query: 152 EISLTRGPSGLGFNIVGGTDQQYVSNDSGIFVSRIKENGAAALDGRLQEGDKILSVNGQD 331
EI L +GP GLGF+I GG Q++ D+ I+V++I E GAA DG+LQ GDK+L+VN
Sbjct: 203 EIKLIKGPKGLGFSIAGGVGNQHIPGDNSIYVTKIIEGGAAHKDGKLQIGDKLLAVNNVC 262
Query: 332 LKNLLHQDAVDLFRNAGYTVSLRV 403
L+ + H++AV +N V L+V
Sbjct: 263 LEEVTHEEAVTALKNTSDFVYLKV 286
Score = 73.6 bits (179), Expect = 3e-13
Identities = 39/89 (43%), Positives = 55/89 (61%)
Frame = +2
Query: 152 EISLTRGPSGLGFNIVGGTDQQYVSNDSGIFVSRIKENGAAALDGRLQEGDKILSVNGQD 331
++ L RG +GLGFNIVGG D + GIF+S I G A L G L++GD+I+SVN D
Sbjct: 350 KVVLHRGSTGLGFNIVGGEDGE------GIFISFILAGGPADLSGELRKGDRIISVNSVD 403
Query: 332 LKNLLHQDAVDLFRNAGYTVSLRVQHRSQ 418
L+ H+ A +NAG V++ Q+R +
Sbjct: 404 LRAASHEQAAAALKNAGQAVTIVAQYRPE 432
>ref|NP_001191316.1| disks large homolog 1 isoform 4 [Homo sapiens].
Length = 800
Score = 88.2 bits (217), Expect = 1e-17
Identities = 45/91 (49%), Positives = 61/91 (67%)
Frame = +2
Query: 149 EEISLTRGPSGLGFNIVGGTDQQYVSNDSGIFVSRIKENGAAALDGRLQEGDKILSVNGQ 328
EEI+L RG SGLGF+I GGTD ++ +DS IF+++I GAAA DGRL+ D IL VN
Sbjct: 107 EEITLERGNSGLGFSIAGGTDNPHIGDDSSIFITKIITGGAAAQDGRLRVNDCILRVNEV 166
Query: 329 DLKNLLHQDAVDLFRNAGYTVSLRVQHRSQV 421
D++++ H AV+ + AG V L V+ R V
Sbjct: 167 DVRDVTHSKAVEALKEAGSIVRLYVKRRKPV 197
Score = 80.9 bits (198), Expect = 2e-15
Identities = 39/84 (46%), Positives = 56/84 (66%)
Frame = +2
Query: 152 EISLTRGPSGLGFNIVGGTDQQYVSNDSGIFVSRIKENGAAALDGRLQEGDKILSVNGQD 331
EI L +GP GLGF+I GG Q++ D+ I+V++I E GAA DG+LQ GDK+L+VN
Sbjct: 203 EIKLIKGPKGLGFSIAGGVGNQHIPGDNSIYVTKIIEGGAAHKDGKLQIGDKLLAVNNVC 262
Query: 332 LKNLLHQDAVDLFRNAGYTVSLRV 403
L+ + H++AV +N V L+V
Sbjct: 263 LEEVTHEEAVTALKNTSDFVYLKV 286
Score = 73.6 bits (179), Expect = 3e-13
Identities = 39/89 (43%), Positives = 55/89 (61%)
Frame = +2
Query: 152 EISLTRGPSGLGFNIVGGTDQQYVSNDSGIFVSRIKENGAAALDGRLQEGDKILSVNGQD 331
++ L RG +GLGFNIVGG D + GIF+S I G A L G L++GD+I+SVN D
Sbjct: 350 KVVLHRGSTGLGFNIVGGEDGE------GIFISFILAGGPADLSGELRKGDRIISVNSVD 403
Query: 332 LKNLLHQDAVDLFRNAGYTVSLRVQHRSQ 418
L+ H+ A +NAG V++ Q+R +
Sbjct: 404 LRAASHEQAAAALKNAGQAVTIVAQYRPE 432
>ref|NP_001191315.1| disks large homolog 1 isoform 3 [Homo sapiens].
Length = 892
Score = 88.2 bits (217), Expect = 1e-17
Identities = 45/91 (49%), Positives = 61/91 (67%)
Frame = +2
Query: 149 EEISLTRGPSGLGFNIVGGTDQQYVSNDSGIFVSRIKENGAAALDGRLQEGDKILSVNGQ 328
EEI+L RG SGLGF+I GGTD ++ +DS IF+++I GAAA DGRL+ D IL VN
Sbjct: 190 EEITLERGNSGLGFSIAGGTDNPHIGDDSSIFITKIITGGAAAQDGRLRVNDCILRVNEV 249
Query: 329 DLKNLLHQDAVDLFRNAGYTVSLRVQHRSQV 421
D++++ H AV+ + AG V L V+ R V
Sbjct: 250 DVRDVTHSKAVEALKEAGSIVRLYVKRRKPV 280
Score = 80.9 bits (198), Expect = 2e-15
Identities = 39/84 (46%), Positives = 56/84 (66%)
Frame = +2
Query: 152 EISLTRGPSGLGFNIVGGTDQQYVSNDSGIFVSRIKENGAAALDGRLQEGDKILSVNGQD 331
EI L +GP GLGF+I GG Q++ D+ I+V++I E GAA DG+LQ GDK+L+VN
Sbjct: 286 EIKLIKGPKGLGFSIAGGVGNQHIPGDNSIYVTKIIEGGAAHKDGKLQIGDKLLAVNNVC 345
Query: 332 LKNLLHQDAVDLFRNAGYTVSLRV 403
L+ + H++AV +N V L+V
Sbjct: 346 LEEVTHEEAVTALKNTSDFVYLKV 369
Score = 73.6 bits (179), Expect = 3e-13
Identities = 39/89 (43%), Positives = 55/89 (61%)
Frame = +2
Query: 152 EISLTRGPSGLGFNIVGGTDQQYVSNDSGIFVSRIKENGAAALDGRLQEGDKILSVNGQD 331
++ L RG +GLGFNIVGG D + GIF+S I G A L G L++GD+I+SVN D
Sbjct: 433 KVVLHRGSTGLGFNIVGGEDGE------GIFISFILAGGPADLSGELRKGDRIISVNSVD 486
Query: 332 LKNLLHQDAVDLFRNAGYTVSLRVQHRSQ 418
L+ H+ A +NAG V++ Q+R +
Sbjct: 487 LRAASHEQAAAALKNAGQAVTIVAQYRPE 515
>ref|NP_001091894.1| disks large homolog 1 isoform 1 [Homo sapiens].
Length = 904
Score = 88.2 bits (217), Expect = 1e-17
Identities = 45/91 (49%), Positives = 61/91 (67%)
Frame = +2
Query: 149 EEISLTRGPSGLGFNIVGGTDQQYVSNDSGIFVSRIKENGAAALDGRLQEGDKILSVNGQ 328
EEI+L RG SGLGF+I GGTD ++ +DS IF+++I GAAA DGRL+ D IL VN
Sbjct: 223 EEITLERGNSGLGFSIAGGTDNPHIGDDSSIFITKIITGGAAAQDGRLRVNDCILRVNEV 282
Query: 329 DLKNLLHQDAVDLFRNAGYTVSLRVQHRSQV 421
D++++ H AV+ + AG V L V+ R V
Sbjct: 283 DVRDVTHSKAVEALKEAGSIVRLYVKRRKPV 313
Score = 80.9 bits (198), Expect = 2e-15
Identities = 39/84 (46%), Positives = 56/84 (66%)
Frame = +2
Query: 152 EISLTRGPSGLGFNIVGGTDQQYVSNDSGIFVSRIKENGAAALDGRLQEGDKILSVNGQD 331
EI L +GP GLGF+I GG Q++ D+ I+V++I E GAA DG+LQ GDK+L+VN
Sbjct: 319 EIKLIKGPKGLGFSIAGGVGNQHIPGDNSIYVTKIIEGGAAHKDGKLQIGDKLLAVNNVC 378
Query: 332 LKNLLHQDAVDLFRNAGYTVSLRV 403
L+ + H++AV +N V L+V
Sbjct: 379 LEEVTHEEAVTALKNTSDFVYLKV 402
Score = 73.6 bits (179), Expect = 3e-13
Identities = 39/89 (43%), Positives = 55/89 (61%)
Frame = +2
Query: 152 EISLTRGPSGLGFNIVGGTDQQYVSNDSGIFVSRIKENGAAALDGRLQEGDKILSVNGQD 331
++ L RG +GLGFNIVGG D + GIF+S I G A L G L++GD+I+SVN D
Sbjct: 466 KVVLHRGSTGLGFNIVGGEDGE------GIFISFILAGGPADLSGELRKGDRIISVNSVD 519
Query: 332 LKNLLHQDAVDLFRNAGYTVSLRVQHRSQ 418
L+ H+ A +NAG V++ Q+R +
Sbjct: 520 LRAASHEQAAAALKNAGQAVTIVAQYRPE 548
>ref|NP_004078.2| disks large homolog 1 isoform 2 [Homo sapiens].
Length = 926
Score = 88.2 bits (217), Expect = 1e-17
Identities = 45/91 (49%), Positives = 61/91 (67%)
Frame = +2
Query: 149 EEISLTRGPSGLGFNIVGGTDQQYVSNDSGIFVSRIKENGAAALDGRLQEGDKILSVNGQ 328
EEI+L RG SGLGF+I GGTD ++ +DS IF+++I GAAA DGRL+ D IL VN
Sbjct: 223 EEITLERGNSGLGFSIAGGTDNPHIGDDSSIFITKIITGGAAAQDGRLRVNDCILRVNEV 282
Query: 329 DLKNLLHQDAVDLFRNAGYTVSLRVQHRSQV 421
D++++ H AV+ + AG V L V+ R V
Sbjct: 283 DVRDVTHSKAVEALKEAGSIVRLYVKRRKPV 313
Score = 80.9 bits (198), Expect = 2e-15
Identities = 39/84 (46%), Positives = 56/84 (66%)
Frame = +2
Query: 152 EISLTRGPSGLGFNIVGGTDQQYVSNDSGIFVSRIKENGAAALDGRLQEGDKILSVNGQD 331
EI L +GP GLGF+I GG Q++ D+ I+V++I E GAA DG+LQ GDK+L+VN
Sbjct: 319 EIKLIKGPKGLGFSIAGGVGNQHIPGDNSIYVTKIIEGGAAHKDGKLQIGDKLLAVNNVC 378
Query: 332 LKNLLHQDAVDLFRNAGYTVSLRV 403
L+ + H++AV +N V L+V
Sbjct: 379 LEEVTHEEAVTALKNTSDFVYLKV 402
Score = 73.6 bits (179), Expect = 3e-13
Identities = 39/89 (43%), Positives = 55/89 (61%)
Frame = +2
Query: 152 EISLTRGPSGLGFNIVGGTDQQYVSNDSGIFVSRIKENGAAALDGRLQEGDKILSVNGQD 331
++ L RG +GLGFNIVGG D + GIF+S I G A L G L++GD+I+SVN D
Sbjct: 466 KVVLHRGSTGLGFNIVGGEDGE------GIFISFILAGGPADLSGELRKGDRIISVNSVD 519
Query: 332 LKNLLHQDAVDLFRNAGYTVSLRVQHRSQ 418
L+ H+ A +NAG V++ Q+R +
Sbjct: 520 LRAASHEQAAAALKNAGQAVTIVAQYRPE 548
>ref|NP_001136172.1| disks large homolog 2 isoform 3 [Homo sapiens].
Length = 749
Score = 85.9 bits (211), Expect = 5e-17
Identities = 44/91 (48%), Positives = 59/91 (64%)
Frame = +2
Query: 149 EEISLTRGPSGLGFNIVGGTDQQYVSNDSGIFVSRIKENGAAALDGRLQEGDKILSVNGQ 328
EEI+L RG SGLGF+I GGTD ++ +D GIF+++I GAAA DGRL+ D IL VN
Sbjct: 46 EEITLERGNSGLGFSIAGGTDNPHIGDDPGIFITKIIPGGAAAEDGRLRVNDCILRVNEV 105
Query: 329 DLKNLLHQDAVDLFRNAGYTVSLRVQHRSQV 421
D+ + H AV+ + AG V L V+ R +
Sbjct: 106 DVSEVSHSKAVEALKEAGSIVRLYVRRRRPI 136
Score = 84.0 bits (206), Expect = 2e-16
Identities = 40/89 (44%), Positives = 58/89 (65%)
Frame = +2
Query: 137 LVTEEEISLTRGPSGLGFNIVGGTDQQYVSNDSGIFVSRIKENGAAALDGRLQEGDKILS 316
L T EI L +GP GLGF+I GG Q++ D+ I+V++I + GAA DGRLQ GD++L
Sbjct: 137 LETVVEIKLFKGPKGLGFSIAGGVGNQHIPGDNSIYVTKIIDGGAAQKDGRLQVGDRLLM 196
Query: 317 VNGQDLKNLLHQDAVDLFRNAGYTVSLRV 403
VN L+ + H++AV + +N V L+V
Sbjct: 197 VNNYSLEEVTHEEAVAILKNTSEVVYLKV 225
Score = 75.1 bits (183), Expect = 9e-14
Identities = 41/89 (46%), Positives = 55/89 (61%)
Frame = +2
Query: 152 EISLTRGPSGLGFNIVGGTDQQYVSNDSGIFVSRIKENGAAALDGRLQEGDKILSVNGQD 331
++ L +G +GLGFNIVGG D + GIFVS I G A L G LQ GD+ILSVNG D
Sbjct: 318 KVVLHKGSTGLGFNIVGGEDGE------GIFVSFILAGGPADLSGELQRGDQILSVNGID 371
Query: 332 LKNLLHQDAVDLFRNAGYTVSLRVQHRSQ 418
L+ H+ A + AG TV++ Q++ +
Sbjct: 372 LRGASHEQAAAALKGAGQTVTIIAQYQPE 400
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 39,178,882
Number of extensions: 1079321
Number of successful extensions: 4144
Number of sequences better than 1.0e-05: 87
Number of HSP's gapped: 4051
Number of HSP's successfully gapped: 172
Length of query: 322
Length of database: 18,297,164
Length adjustment: 103
Effective length of query: 219
Effective length of database: 14,901,872
Effective search space: 3263509968
Effective search space used: 3263509968
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-004159
(967 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_079568.1| synaptojanin-2-binding protein [Mus musculus]. 252 3e-67
Alignment gi|NP_031888.2| disks large homolog 1 [Mus musculus]. 87 1e-17
Alignment gi|NP_035937.2| disks large homolog 2 isoform 1 [Mus musculus]. 86 4e-17
Alignment gi|NP_001103222.1| disks large homolog 4 isoform 2 [Mus musculu... 86 4e-17
Alignment gi|NP_031890.1| disks large homolog 4 isoform 1 [Mus musculus]. 86 4e-17
Alignment gi|NP_001171249.1| disks large homolog 3 isoform 2 [Mus musculu... 84 2e-16
Alignment gi|NP_058027.1| disks large homolog 3 isoform 1 [Mus musculus]. 84 2e-16
Alignment gi|NP_001171250.1| disks large homolog 3 isoform 3 [Mus musculu... 75 6e-14
Alignment gi|NP_001229975.1| disks large homolog 2 isoform 2 [Mus musculu... 75 8e-14
Alignment gi|NP_034950.2| multiple PDZ domain protein [Mus musculus]. 75 1e-13
>ref|NP_079568.1| synaptojanin-2-binding protein [Mus musculus].
Length = 145
Score = 252 bits (644), Expect = 3e-67
Identities = 123/144 (85%), Positives = 134/144 (93%)
Frame = +2
Query: 116 MNGRVDYLVTEEEISLTRGPSGLGFNIVGGTDQQYVSNDSGIFVSRIKENGAAALDGRLQ 295
MNGRVDYLVTEEEI+LTRGPSGLGFNIVGGTDQQYVSNDSGI+VSRIKE+GAAA DGRLQ
Sbjct: 1 MNGRVDYLVTEEEINLTRGPSGLGFNIVGGTDQQYVSNDSGIYVSRIKEDGAAAQDGRLQ 60
Query: 296 EGDKILSVNGQDLKNLLHQDAVDLFRNAGYTVSLRVQHRSQVQNGPVGHQGDGEPSGIPI 475
EGDKILSVNGQDLKNLLHQDAVDLFRNAG VSLRVQHR VQNGP+ H+G+GEPSG+P+
Sbjct: 61 EGDKILSVNGQDLKNLLHQDAVDLFRNAGCAVSLRVQHRLPVQNGPIVHRGEGEPSGVPV 120
Query: 476 TVVLVPVFALIMVAAWAFMRYRHQ 547
+VL+PVFAL MVA WAF+RYR Q
Sbjct: 121 AMVLLPVFALTMVAVWAFVRYRKQ 144
>ref|NP_031888.2| disks large homolog 1 [Mus musculus].
Length = 927
Score = 87.4 bits (215), Expect = 1e-17
Identities = 44/88 (50%), Positives = 60/88 (68%)
Frame = +2
Query: 149 EEISLTRGPSGLGFNIVGGTDQQYVSNDSGIFVSRIKENGAAALDGRLQEGDKILSVNGQ 328
EEI+L RG SGLGF+I GGTD ++ +DS IF+++I GAAA DGRL+ D IL VN
Sbjct: 223 EEITLERGNSGLGFSIAGGTDNPHIGDDSSIFITKIITGGAAAQDGRLRVNDCILRVNEA 282
Query: 329 DLKNLLHQDAVDLFRNAGYTVSLRVQHR 412
D++++ H AV+ + AG V L V+ R
Sbjct: 283 DVRDVTHSKAVEALKEAGSIVRLYVKRR 310
Score = 80.9 bits (198), Expect = 1e-15
Identities = 39/84 (46%), Positives = 56/84 (66%)
Frame = +2
Query: 152 EISLTRGPSGLGFNIVGGTDQQYVSNDSGIFVSRIKENGAAALDGRLQEGDKILSVNGQD 331
EI L +GP GLGF+I GG Q++ D+ I+V++I E GAA DG+LQ GDK+L+VN
Sbjct: 319 EIKLIKGPKGLGFSIAGGVGNQHIPGDNSIYVTKIIEGGAAHKDGKLQIGDKLLAVNSVC 378
Query: 332 LKNLLHQDAVDLFRNAGYTVSLRV 403
L+ + H++AV +N V L+V
Sbjct: 379 LEEVTHEEAVTALKNTSDFVYLKV 402
Score = 73.6 bits (179), Expect = 2e-13
Identities = 39/89 (43%), Positives = 55/89 (61%)
Frame = +2
Query: 152 EISLTRGPSGLGFNIVGGTDQQYVSNDSGIFVSRIKENGAAALDGRLQEGDKILSVNGQD 331
++ L RG +GLGFNIVGG D + GIF+S I G A L G L++GD+I+SVN D
Sbjct: 466 KVVLHRGSTGLGFNIVGGEDGE------GIFISFILAGGPADLSGELRKGDRIISVNSVD 519
Query: 332 LKNLLHQDAVDLFRNAGYTVSLRVQHRSQ 418
L+ H+ A +NAG V++ Q+R +
Sbjct: 520 LRAASHEQAAAALKNAGQAVTIVAQYRPE 548
>ref|NP_035937.2| disks large homolog 2 isoform 1 [Mus musculus].
Length = 852
Score = 85.9 bits (211), Expect = 4e-17
Identities = 44/91 (48%), Positives = 59/91 (64%)
Frame = +2
Query: 149 EEISLTRGPSGLGFNIVGGTDQQYVSNDSGIFVSRIKENGAAALDGRLQEGDKILSVNGQ 328
EEI+L RG SGLGF+I GGTD ++ +D GIF+++I GAAA DGRL+ D IL VN
Sbjct: 97 EEITLERGNSGLGFSIAGGTDNPHIGDDPGIFITKIIPGGAAAEDGRLRVNDCILRVNEV 156
Query: 329 DLKNLLHQDAVDLFRNAGYTVSLRVQHRSQV 421
D+ + H AV+ + AG V L V+ R +
Sbjct: 157 DVSEVSHSKAVEALKEAGSIVRLYVRRRRPI 187
Score = 83.6 bits (205), Expect = 2e-16
Identities = 40/89 (44%), Positives = 58/89 (65%)
Frame = +2
Query: 137 LVTEEEISLTRGPSGLGFNIVGGTDQQYVSNDSGIFVSRIKENGAAALDGRLQEGDKILS 316
L T EI L +GP GLGF+I GG Q++ D+ I+V++I + GAA DGRLQ GD++L
Sbjct: 188 LETVVEIKLFKGPKGLGFSIAGGVGNQHIPGDNSIYVTKIIDGGAAQKDGRLQVGDRLLM 247
Query: 317 VNGQDLKNLLHQDAVDLFRNAGYTVSLRV 403
VN L+ + H++AV + +N V L+V
Sbjct: 248 VNNYSLEEVTHEEAVAILKNTSDVVYLKV 276
Score = 75.1 bits (183), Expect = 8e-14
Identities = 41/89 (46%), Positives = 55/89 (61%)
Frame = +2
Query: 152 EISLTRGPSGLGFNIVGGTDQQYVSNDSGIFVSRIKENGAAALDGRLQEGDKILSVNGQD 331
++ L +G +GLGFNIVGG D + GIFVS I G A L G LQ GD+ILSVNG D
Sbjct: 421 KVVLHKGSTGLGFNIVGGEDGE------GIFVSFILAGGPADLSGELQRGDQILSVNGID 474
Query: 332 LKNLLHQDAVDLFRNAGYTVSLRVQHRSQ 418
L+ H+ A + AG TV++ Q++ +
Sbjct: 475 LRGASHEQAAAALKGAGQTVTIIAQYQPE 503
>ref|NP_001103222.1| disks large homolog 4 isoform 2 [Mus musculus].
Length = 721
Score = 85.9 bits (211), Expect = 4e-17
Identities = 42/84 (50%), Positives = 58/84 (69%)
Frame = +2
Query: 152 EISLTRGPSGLGFNIVGGTDQQYVSNDSGIFVSRIKENGAAALDGRLQEGDKILSVNGQD 331
EI L +GP GLGF+I GG Q++ D+ I+V++I E GAA DGRLQ GDKIL+VN
Sbjct: 157 EIKLIKGPKGLGFSIAGGVGNQHIPGDNSIYVTKIIEGGAAHKDGRLQIGDKILAVNSVG 216
Query: 332 LKNLLHQDAVDLFRNAGYTVSLRV 403
L++++H+DAV +N V L+V
Sbjct: 217 LEDVMHEDAVAALKNTYDVVYLKV 240
Score = 85.1 bits (209), Expect = 7e-17
Identities = 45/97 (46%), Positives = 61/97 (62%)
Frame = +2
Query: 122 GRVDYLVTEEEISLTRGPSGLGFNIVGGTDQQYVSNDSGIFVSRIKENGAAALDGRLQEG 301
G ++Y EEI+L RG SGLGF+I GGTD ++ +D IF+++I GAAA DGRL+
Sbjct: 56 GEMEY----EEITLERGNSGLGFSIAGGTDNPHIGDDPSIFITKIIPGGAAAQDGRLRVN 111
Query: 302 DKILSVNGQDLKNLLHQDAVDLFRNAGYTVSLRVQHR 412
D IL VN D++ + H AV+ + AG V L V R
Sbjct: 112 DSILFVNEVDVREVTHSAAVEALKEAGSIVRLYVMRR 148
Score = 79.3 bits (194), Expect = 4e-15
Identities = 44/99 (44%), Positives = 59/99 (59%)
Frame = +2
Query: 122 GRVDYLVTEEEISLTRGPSGLGFNIVGGTDQQYVSNDSGIFVSRIKENGAAALDGRLQEG 301
G D I + RG +GLGFNIVGG D + GIF+S I G A L G L++G
Sbjct: 300 GEEDIPREPRRIVIHRGSTGLGFNIVGGEDGE------GIFISFILAGGPADLSGELRKG 353
Query: 302 DKILSVNGQDLKNLLHQDAVDLFRNAGYTVSLRVQHRSQ 418
D+ILSVNG DL+N H+ A +NAG TV++ Q++ +
Sbjct: 354 DQILSVNGVDLRNASHEQAAIALKNAGQTVTIIAQYKPE 392
>ref|NP_031890.1| disks large homolog 4 isoform 1 [Mus musculus].
Length = 724
Score = 85.9 bits (211), Expect = 4e-17
Identities = 42/84 (50%), Positives = 58/84 (69%)
Frame = +2
Query: 152 EISLTRGPSGLGFNIVGGTDQQYVSNDSGIFVSRIKENGAAALDGRLQEGDKILSVNGQD 331
EI L +GP GLGF+I GG Q++ D+ I+V++I E GAA DGRLQ GDKIL+VN
Sbjct: 160 EIKLIKGPKGLGFSIAGGVGNQHIPGDNSIYVTKIIEGGAAHKDGRLQIGDKILAVNSVG 219
Query: 332 LKNLLHQDAVDLFRNAGYTVSLRV 403
L++++H+DAV +N V L+V
Sbjct: 220 LEDVMHEDAVAALKNTYDVVYLKV 243
Score = 85.1 bits (209), Expect = 7e-17
Identities = 45/97 (46%), Positives = 61/97 (62%)
Frame = +2
Query: 122 GRVDYLVTEEEISLTRGPSGLGFNIVGGTDQQYVSNDSGIFVSRIKENGAAALDGRLQEG 301
G ++Y EEI+L RG SGLGF+I GGTD ++ +D IF+++I GAAA DGRL+
Sbjct: 59 GEMEY----EEITLERGNSGLGFSIAGGTDNPHIGDDPSIFITKIIPGGAAAQDGRLRVN 114
Query: 302 DKILSVNGQDLKNLLHQDAVDLFRNAGYTVSLRVQHR 412
D IL VN D++ + H AV+ + AG V L V R
Sbjct: 115 DSILFVNEVDVREVTHSAAVEALKEAGSIVRLYVMRR 151
Score = 79.3 bits (194), Expect = 4e-15
Identities = 44/99 (44%), Positives = 59/99 (59%)
Frame = +2
Query: 122 GRVDYLVTEEEISLTRGPSGLGFNIVGGTDQQYVSNDSGIFVSRIKENGAAALDGRLQEG 301
G D I + RG +GLGFNIVGG D + GIF+S I G A L G L++G
Sbjct: 303 GEEDIPREPRRIVIHRGSTGLGFNIVGGEDGE------GIFISFILAGGPADLSGELRKG 356
Query: 302 DKILSVNGQDLKNLLHQDAVDLFRNAGYTVSLRVQHRSQ 418
D+ILSVNG DL+N H+ A +NAG TV++ Q++ +
Sbjct: 357 DQILSVNGVDLRNASHEQAAIALKNAGQTVTIIAQYKPE 395
>ref|NP_001171249.1| disks large homolog 3 isoform 2 [Mus musculus].
Length = 835
Score = 83.6 bits (205), Expect = 2e-16
Identities = 46/100 (46%), Positives = 63/100 (63%)
Frame = +2
Query: 113 NMNGRVDYLVTEEEISLTRGPSGLGFNIVGGTDQQYVSNDSGIFVSRIKENGAAALDGRL 292
++NG D + EEI L RG SGLGF+I GG D +V +D GIF+++I GAAA+DGRL
Sbjct: 137 SVNGS-DGMFKYEEIVLERGNSGLGFSIAGGIDNPHVPDDPGIFITKIIPGGAAAMDGRL 195
Query: 293 QEGDKILSVNGQDLKNLLHQDAVDLFRNAGYTVSLRVQHR 412
D +L VN D+ ++H AV+ + AG V L V+ R
Sbjct: 196 GVNDCVLRVNEVDVSEVVHSRAVEALKEAGPVVRLVVRRR 235
Score = 82.0 bits (201), Expect = 6e-16
Identities = 37/84 (44%), Positives = 59/84 (70%)
Frame = +2
Query: 152 EISLTRGPSGLGFNIVGGTDQQYVSNDSGIFVSRIKENGAAALDGRLQEGDKILSVNGQD 331
E++L +GP GLGF+I GG Q++ D+ I++++I E GAA DGRLQ GD++L+VN +
Sbjct: 244 EVNLLKGPKGLGFSIAGGIGNQHIPGDNSIYITKIIEGGAAQKDGRLQIGDRLLAVNNTN 303
Query: 332 LKNLLHQDAVDLFRNAGYTVSLRV 403
L+++ H++AV +N V L+V
Sbjct: 304 LQDVRHEEAVASLKNTSDMVYLKV 327
Score = 77.0 bits (188), Expect = 2e-14
Identities = 43/102 (42%), Positives = 60/102 (58%)
Frame = +2
Query: 113 NMNGRVDYLVTEEEISLTRGPSGLGFNIVGGTDQQYVSNDSGIFVSRIKENGAAALDGRL 292
+M D+ +I L +G +GLGFNIVGG D + GIFVS I G A L G L
Sbjct: 391 HMLAEEDFTREPRKIILHKGSTGLGFNIVGGEDGE------GIFVSFILAGGPADLSGEL 444
Query: 293 QEGDKILSVNGQDLKNLLHQDAVDLFRNAGYTVSLRVQHRSQ 418
+ GD+ILSVNG +L+N H+ A + AG +V++ Q+R +
Sbjct: 445 RRGDRILSVNGVNLRNATHEQAAAALKRAGQSVTIVAQYRPE 486
>ref|NP_058027.1| disks large homolog 3 isoform 1 [Mus musculus].
Length = 849
Score = 83.6 bits (205), Expect = 2e-16
Identities = 46/100 (46%), Positives = 63/100 (63%)
Frame = +2
Query: 113 NMNGRVDYLVTEEEISLTRGPSGLGFNIVGGTDQQYVSNDSGIFVSRIKENGAAALDGRL 292
++NG D + EEI L RG SGLGF+I GG D +V +D GIF+++I GAAA+DGRL
Sbjct: 137 SVNGS-DGMFKYEEIVLERGNSGLGFSIAGGIDNPHVPDDPGIFITKIIPGGAAAMDGRL 195
Query: 293 QEGDKILSVNGQDLKNLLHQDAVDLFRNAGYTVSLRVQHR 412
D +L VN D+ ++H AV+ + AG V L V+ R
Sbjct: 196 GVNDCVLRVNEVDVSEVVHSRAVEALKEAGPVVRLVVRRR 235
Score = 82.0 bits (201), Expect = 6e-16
Identities = 37/84 (44%), Positives = 59/84 (70%)
Frame = +2
Query: 152 EISLTRGPSGLGFNIVGGTDQQYVSNDSGIFVSRIKENGAAALDGRLQEGDKILSVNGQD 331
E++L +GP GLGF+I GG Q++ D+ I++++I E GAA DGRLQ GD++L+VN +
Sbjct: 244 EVNLLKGPKGLGFSIAGGIGNQHIPGDNSIYITKIIEGGAAQKDGRLQIGDRLLAVNNTN 303
Query: 332 LKNLLHQDAVDLFRNAGYTVSLRV 403
L+++ H++AV +N V L+V
Sbjct: 304 LQDVRHEEAVASLKNTSDMVYLKV 327
Score = 77.0 bits (188), Expect = 2e-14
Identities = 43/102 (42%), Positives = 60/102 (58%)
Frame = +2
Query: 113 NMNGRVDYLVTEEEISLTRGPSGLGFNIVGGTDQQYVSNDSGIFVSRIKENGAAALDGRL 292
+M D+ +I L +G +GLGFNIVGG D + GIFVS I G A L G L
Sbjct: 391 HMLAEEDFTREPRKIILHKGSTGLGFNIVGGEDGE------GIFVSFILAGGPADLSGEL 444
Query: 293 QEGDKILSVNGQDLKNLLHQDAVDLFRNAGYTVSLRVQHRSQ 418
+ GD+ILSVNG +L+N H+ A + AG +V++ Q+R +
Sbjct: 445 RRGDRILSVNGVNLRNATHEQAAAALKRAGQSVTIVAQYRPE 486
>ref|NP_001171250.1| disks large homolog 3 isoform 3 [Mus musculus].
Length = 512
Score = 75.5 bits (184), Expect = 6e-14
Identities = 41/89 (46%), Positives = 56/89 (62%)
Frame = +2
Query: 152 EISLTRGPSGLGFNIVGGTDQQYVSNDSGIFVSRIKENGAAALDGRLQEGDKILSVNGQD 331
+I L +G +GLGFNIVGG D + GIFVS I G A L G L+ GD+ILSVNG +
Sbjct: 49 KIILHKGSTGLGFNIVGGEDGE------GIFVSFILAGGPADLSGELRRGDRILSVNGVN 102
Query: 332 LKNLLHQDAVDLFRNAGYTVSLRVQHRSQ 418
L+N H+ A + AG +V++ Q+R +
Sbjct: 103 LRNATHEQAAAALKRAGQSVTIVAQYRPE 131
>ref|NP_001229975.1| disks large homolog 2 isoform 2 [Mus musculus].
Length = 481
Score = 75.1 bits (183), Expect = 8e-14
Identities = 41/89 (46%), Positives = 55/89 (61%)
Frame = +2
Query: 152 EISLTRGPSGLGFNIVGGTDQQYVSNDSGIFVSRIKENGAAALDGRLQEGDKILSVNGQD 331
++ L +G +GLGFNIVGG D + GIFVS I G A L G LQ GD+ILSVNG D
Sbjct: 18 KVVLHKGSTGLGFNIVGGEDGE------GIFVSFILAGGPADLSGELQRGDQILSVNGID 71
Query: 332 LKNLLHQDAVDLFRNAGYTVSLRVQHRSQ 418
L+ H+ A + AG TV++ Q++ +
Sbjct: 72 LRGASHEQAAAALKGAGQTVTIIAQYQPE 100
>ref|NP_034950.2| multiple PDZ domain protein [Mus musculus].
Length = 2055
Score = 74.7 bits (182), Expect = 1e-13
Identities = 39/83 (46%), Positives = 55/83 (66%)
Frame = +2
Query: 155 ISLTRGPSGLGFNIVGGTDQQYVSNDSGIFVSRIKENGAAALDGRLQEGDKILSVNGQDL 334
I+L RGP GLGF+IVGG + D I+V + GAAA DGRL+ GD+I++VNGQ L
Sbjct: 1973 ITLDRGPDGLGFSIVGGYGSPH--GDLPIYVKTVFAKGAAAEDGRLKRGDQIIAVNGQSL 2030
Query: 335 KNLLHQDAVDLFRNAGYTVSLRV 403
+ + H++AV + + TV+L V
Sbjct: 2031 EGVTHEEAVAILKRTKGTVTLMV 2053
Score = 66.2 bits (160), Expect = 4e-11
Identities = 35/100 (35%), Positives = 57/100 (57%)
Frame = +2
Query: 152 EISLTRGPSGLGFNIVGGTDQQYVSNDSGIFVSRIKENGAAALDGRLQEGDKILSVNGQD 331
++ LT+ GLG I G + + SGIFV I ++ A DGR+Q GD+I++V+G +
Sbjct: 378 DVELTKNVQGLGITIAGYIGDKKLE-PSGIFVKSITKSSAVEHDGRIQIGDQIIAVDGTN 436
Query: 332 LKNLLHQDAVDLFRNAGYTVSLRVQHRSQVQNGPVGHQGD 451
L+ +Q AV++ R+ G TV L + + Q + +GD
Sbjct: 437 LQGFTNQQAVEVLRHTGQTVRLTLMRKGASQEAELTSRGD 476
Score = 64.7 bits (156), Expect = 1e-10
Identities = 34/84 (40%), Positives = 48/84 (57%)
Frame = +2
Query: 146 EEEISLTRGPSGLGFNIVGGTDQQYVSNDSGIFVSRIKENGAAALDGRLQEGDKILSVNG 325
E I +++G +GLG +IVGG+D I + + E GAA DGRL GD+IL VNG
Sbjct: 1612 ETTIEISKGQTGLGLSIVGGSDTLL----GAIIIHEVYEEGAACKDGRLWAGDQILEVNG 1667
Query: 326 QDLKNLLHQDAVDLFRNAGYTVSL 397
DL+ H +A+++ R V L
Sbjct: 1668 IDLRKATHDEAINVLRQTPQRVRL 1691
Score = 57.4 bits (137), Expect = 2e-08
Identities = 33/80 (41%), Positives = 48/80 (60%), Gaps = 1/80 (1%)
Frame = +2
Query: 179 GLGFNIVGGTDQQYVSNDSGIFVSRIKENGAAALDGRLQEGDKILSVNGQDL-KNLLHQD 355
GLGF++VG + + GIFV I+E A DGRL+E D+IL++NGQ L + + HQ
Sbjct: 148 GLGFSVVGLRSEN--RGELGIFVQEIQEGSVAHRDGRLKETDQILAINGQVLDQTITHQQ 205
Query: 356 AVDLFRNAGYTVSLRVQHRS 415
A+ + + A TV L + S
Sbjct: 206 AISILQKAKDTVQLVIARGS 225
Score = 57.4 bits (137), Expect = 2e-08
Identities = 35/89 (39%), Positives = 50/89 (56%), Gaps = 5/89 (5%)
Frame = +2
Query: 155 ISLTRGPS-GLGFNIVGGTDQ-QYVSNDS---GIFVSRIKENGAAALDGRLQEGDKILSV 319
+ L R PS LG +IVGG +SN GIF+ + E+ A +G L+ GD+I+ V
Sbjct: 1140 VELWREPSKSLGISIVGGRGMGSRLSNGEVMRGIFIKHVLEDSPAGKNGTLKPGDRIIEV 1199
Query: 320 NGQDLKNLLHQDAVDLFRNAGYTVSLRVQ 406
+G DL++ H+ AV+ R AG V VQ
Sbjct: 1200 DGMDLRDASHEQAVEAIRKAGNPVVFMVQ 1228
Score = 55.8 bits (133), Expect = 5e-08
Identities = 34/84 (40%), Positives = 49/84 (58%), Gaps = 1/84 (1%)
Frame = +2
Query: 155 ISLTRGPS-GLGFNIVGGTDQQYVSNDSGIFVSRIKENGAAALDGRLQEGDKILSVNGQD 331
I L + P GLG +IVG ND+G+FVS I + G A DGRL +GD+IL VNG+D
Sbjct: 1711 IELQKRPGKGLGLSIVGKR------NDTGVFVSDIVKGGIADADGRLMQGDQILMVNGED 1764
Query: 332 LKNLLHQDAVDLFRNAGYTVSLRV 403
+++ + L + + V+L V
Sbjct: 1765 VRHATQEAVAALLKCSLGAVTLEV 1788
Score = 55.1 bits (131), Expect = 8e-08
Identities = 31/81 (38%), Positives = 45/81 (55%)
Frame = +2
Query: 155 ISLTRGPSGLGFNIVGGTDQQYVSNDSGIFVSRIKENGAAALDGRLQEGDKILSVNGQDL 334
I L +G SGLG ++ G D+ +S +F+ I GAA DGRLQ D++L +NGQ L
Sbjct: 1339 IELEKGQSGLGLSLAGNKDRTRMS----VFIVGIDPTGAAGRDGRLQIADELLEINGQIL 1394
Query: 335 KNLLHQDAVDLFRNAGYTVSL 397
HQ+A + + A V +
Sbjct: 1395 YGRSHQNASSIIKCAPSKVKI 1415
Score = 49.7 bits (117), Expect = 3e-06
Identities = 30/98 (30%), Positives = 52/98 (53%), Gaps = 1/98 (1%)
Frame = +2
Query: 155 ISLTRGPS-GLGFNIVGGTDQQYVSNDSGIFVSRIKENGAAALDGRLQEGDKILSVNGQD 331
+ + +GP+ LG +I GG D IF++ + NG AA +L+ GD+I+++ G
Sbjct: 1848 VEIKKGPADSLGLSIAGGVGSPL--GDVPIFIAMMHPNGVAAQTQKLRVGDRIVTICGTS 1905
Query: 332 LKNLLHQDAVDLFRNAGYTVSLRVQHRSQVQNGPVGHQ 445
+ H AV+L +NA ++ ++V V + GHQ
Sbjct: 1906 TDGMTHTQAVNLMKNASGSIEVQVVAGGDV-SVVTGHQ 1942
Score = 49.3 bits (116), Expect = 4e-06
Identities = 32/95 (33%), Positives = 41/95 (43%)
Frame = +2
Query: 149 EEISLTRGPSGLGFNIVGGTDQQYVSNDSGIFVSRIKENGAAALDGRLQEGDKILSVNGQ 328
E I L SGLGF I+GG +G+ V I G A GRL GD IL +
Sbjct: 257 ETIELVNDGSGLGFGIIGG-------KATGVIVKTILPGGVADQHGRLCSGDHILKIGDT 309
Query: 329 DLKNLLHQDAVDLFRNAGYTVSLRVQHRSQVQNGP 433
DL + + + R G V L + R V+ P
Sbjct: 310 DLAGMSSEQVAQVLRQCGNRVKLMIA-RGAVEETP 343
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 33,202,499
Number of extensions: 904685
Number of successful extensions: 3436
Number of sequences better than 1.0e-05: 71
Number of HSP's gapped: 3353
Number of HSP's successfully gapped: 130
Length of query: 322
Length of database: 15,617,559
Length adjustment: 101
Effective length of query: 221
Effective length of database: 12,583,923
Effective search space: 2781046983
Effective search space used: 2781046983
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-004159
(967 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_003128687.1| PREDICTED: synaptojanin-2-binding protein-li... 251 4e-67
Alignment gi|XP_003361966.1| PREDICTED: disks large homolog 1-like, parti... 88 6e-18
Alignment gi|XP_003358811.1| PREDICTED: disks large homolog 1 [Sus scrofa]. 88 6e-18
Alignment gi|XP_003357276.1| PREDICTED: disks large homolog 2-like [Sus s... 86 3e-17
Alignment gi|XP_003354995.1| PREDICTED: disks large homolog 4, partial [S... 86 3e-17
Alignment gi|XP_003135199.2| PREDICTED: disks large homolog 3 [Sus scrofa]. 83 2e-16
Alignment gi|XP_003353569.1| PREDICTED: LOW QUALITY PROTEIN: multiple PDZ... 74 1e-13
Alignment gi|XP_003360899.1| PREDICTED: inaD-like protein-like, partial [... 68 9e-12
Alignment gi|XP_003126660.1| PREDICTED: PDZ domain-containing RING finger... 66 3e-11
Alignment gi|XP_003359788.1| PREDICTED: PDZ domain-containing protein 2 [... 65 7e-11
>ref|XP_003128687.1| PREDICTED: synaptojanin-2-binding protein-like [Sus scrofa].
Length = 172
Score = 251 bits (641), Expect = 4e-67
Identities = 124/124 (100%), Positives = 124/124 (100%)
Frame = +2
Query: 179 GLGFNIVGGTDQQYVSNDSGIFVSRIKENGAAALDGRLQEGDKILSVNGQDLKNLLHQDA 358
GLGFNIVGGTDQQYVSNDSGIFVSRIKENGAAALDGRLQEGDKILSVNGQDLKNLLHQDA
Sbjct: 49 GLGFNIVGGTDQQYVSNDSGIFVSRIKENGAAALDGRLQEGDKILSVNGQDLKNLLHQDA 108
Query: 359 VDLFRNAGYTVSLRVQHRSQVQNGPVGHQGDGEPSGIPITVVLVPVFALIMVAAWAFMRY 538
VDLFRNAGYTVSLRVQHRSQVQNGPVGHQGDGEPSGIPITVVLVPVFALIMVAAWAFMRY
Sbjct: 109 VDLFRNAGYTVSLRVQHRSQVQNGPVGHQGDGEPSGIPITVVLVPVFALIMVAAWAFMRY 168
Query: 539 RHQP 550
RHQP
Sbjct: 169 RHQP 172
>ref|XP_003361966.1| PREDICTED: disks large homolog 1-like, partial [Sus scrofa].
Length = 512
Score = 88.2 bits (217), Expect = 6e-18
Identities = 45/91 (49%), Positives = 61/91 (67%)
Frame = +2
Query: 149 EEISLTRGPSGLGFNIVGGTDQQYVSNDSGIFVSRIKENGAAALDGRLQEGDKILSVNGQ 328
EEI+L RG SGLGF+I GGTD ++ +DS IF+++I GAAA DGRL+ D IL VN
Sbjct: 221 EEITLERGNSGLGFSIAGGTDNPHIGDDSSIFITKIIAGGAAAQDGRLRVNDCILRVNEV 280
Query: 329 DLKNLLHQDAVDLFRNAGYTVSLRVQHRSQV 421
D++++ H AV+ + AG V L V+ R V
Sbjct: 281 DVRDVTHSKAVEALKEAGSIVRLYVKRRKPV 311
Score = 80.9 bits (198), Expect = 1e-15
Identities = 39/84 (46%), Positives = 56/84 (66%)
Frame = +2
Query: 152 EISLTRGPSGLGFNIVGGTDQQYVSNDSGIFVSRIKENGAAALDGRLQEGDKILSVNGQD 331
EI L +GP GLGF+I GG Q++ D+ I+V++I E GAA DG+LQ GDK+L+VN
Sbjct: 317 EIKLIKGPKGLGFSIAGGVGNQHIPGDNSIYVTKIIEGGAAHKDGKLQIGDKLLAVNSVC 376
Query: 332 LKNLLHQDAVDLFRNAGYTVSLRV 403
L+ + H++AV +N V L+V
Sbjct: 377 LEEVTHEEAVTALKNTSDFVYLKV 400
Score = 50.8 bits (120), Expect = 1e-06
Identities = 36/95 (37%), Positives = 51/95 (53%), Gaps = 4/95 (4%)
Frame = +2
Query: 44 PADFHLPRHELLLLQVGKPDKQ*NMNGRV--DYLVTEE--EISLTRGPSGLGFNIVGGTD 211
P D H+ L P++ ++ V D +T E ++ L RG +GLGFNIVGG D
Sbjct: 424 PVDNHVSPPSYLGQPPASPNRYSPVSKAVLGDDEITREPRKVILHRGSTGLGFNIVGGED 483
Query: 212 QQYVSNDSGIFVSRIKENGAAALDGRLQEGDKILS 316
+ GIF+S I G A L G L++GD+I+S
Sbjct: 484 GE------GIFISFILAGGPADLSGELRKGDRIIS 512
>ref|XP_003358811.1| PREDICTED: disks large homolog 1 [Sus scrofa].
Length = 747
Score = 88.2 bits (217), Expect = 6e-18
Identities = 45/91 (49%), Positives = 61/91 (67%)
Frame = +2
Query: 149 EEISLTRGPSGLGFNIVGGTDQQYVSNDSGIFVSRIKENGAAALDGRLQEGDKILSVNGQ 328
EEI+L RG SGLGF+I GGTD ++ +DS IF+++I GAAA DGRL+ D IL VN
Sbjct: 122 EEITLERGNSGLGFSIAGGTDNPHIGDDSSIFITKIIAGGAAAQDGRLRVNDCILRVNEV 181
Query: 329 DLKNLLHQDAVDLFRNAGYTVSLRVQHRSQV 421
D++++ H AV+ + AG V L V+ R V
Sbjct: 182 DVRDVTHSKAVEALKEAGSIVRLYVKRRKPV 212
Score = 80.9 bits (198), Expect = 1e-15
Identities = 39/84 (46%), Positives = 56/84 (66%)
Frame = +2
Query: 152 EISLTRGPSGLGFNIVGGTDQQYVSNDSGIFVSRIKENGAAALDGRLQEGDKILSVNGQD 331
EI L +GP GLGF+I GG Q++ D+ I+V++I E GAA DG+LQ GDK+L+VN
Sbjct: 218 EIKLIKGPKGLGFSIAGGVGNQHIPGDNSIYVTKIIEGGAAHKDGKLQIGDKLLAVNSVC 277
Query: 332 LKNLLHQDAVDLFRNAGYTVSLRV 403
L+ + H++AV +N V L+V
Sbjct: 278 LEEVTHEEAVTALKNTSDFVYLKV 301
Score = 74.7 bits (182), Expect = 7e-14
Identities = 48/129 (37%), Positives = 70/129 (54%), Gaps = 4/129 (3%)
Frame = +2
Query: 44 PADFHLPRHELLLLQVGKPDKQ*NMNGRV--DYLVTEE--EISLTRGPSGLGFNIVGGTD 211
P D H+ L P++ ++ V D +T E ++ L RG +GLGFNIVGG D
Sbjct: 325 PVDNHVSPPSYLGQPPASPNRYSPVSKAVLGDDEITREPRKVILHRGSTGLGFNIVGGED 384
Query: 212 QQYVSNDSGIFVSRIKENGAAALDGRLQEGDKILSVNGQDLKNLLHQDAVDLFRNAGYTV 391
+ GIF+S I G A L G L++GD+I+SVN DL+ H+ A +NAG V
Sbjct: 385 GE------GIFISFILAGGPADLSGELRKGDRIISVNSVDLRTASHEQAAAALKNAGQAV 438
Query: 392 SLRVQHRSQ 418
++ Q+R +
Sbjct: 439 TIVAQYRPE 447
>ref|XP_003357276.1| PREDICTED: disks large homolog 2-like [Sus scrofa].
Length = 660
Score = 85.9 bits (211), Expect = 3e-17
Identities = 44/91 (48%), Positives = 59/91 (64%)
Frame = +2
Query: 149 EEISLTRGPSGLGFNIVGGTDQQYVSNDSGIFVSRIKENGAAALDGRLQEGDKILSVNGQ 328
EEI+L RG SGLGF+I GGTD ++ +D GIF+++I GAAA DGRL+ D IL VN
Sbjct: 132 EEITLERGNSGLGFSIAGGTDNPHIGDDPGIFITKIIPGGAAAEDGRLRVNDCILRVNEV 191
Query: 329 DLKNLLHQDAVDLFRNAGYTVSLRVQHRSQV 421
D+ + H AV+ + AG V L V+ R +
Sbjct: 192 DVSEVSHSKAVEALKEAGSIVRLYVRRRRPI 222
Score = 83.6 bits (205), Expect = 2e-16
Identities = 40/89 (44%), Positives = 58/89 (65%)
Frame = +2
Query: 137 LVTEEEISLTRGPSGLGFNIVGGTDQQYVSNDSGIFVSRIKENGAAALDGRLQEGDKILS 316
L T EI L +GP GLGF+I GG Q++ D+ I+V++I + GAA DGRLQ GD++L
Sbjct: 223 LETVVEIKLFKGPKGLGFSIAGGVGNQHIPGDNSIYVTKIIDGGAAQKDGRLQVGDRLLM 282
Query: 317 VNGQDLKNLLHQDAVDLFRNAGYTVSLRV 403
VN L+ + H++AV + +N V L+V
Sbjct: 283 VNNYSLEEVTHEEAVAILKNTSDVVYLKV 311
>ref|XP_003354995.1| PREDICTED: disks large homolog 4, partial [Sus scrofa].
Length = 654
Score = 85.9 bits (211), Expect = 3e-17
Identities = 42/84 (50%), Positives = 58/84 (69%)
Frame = +2
Query: 152 EISLTRGPSGLGFNIVGGTDQQYVSNDSGIFVSRIKENGAAALDGRLQEGDKILSVNGQD 331
EI L +GP GLGF+I GG Q++ D+ I+V++I E GAA DGRLQ GDKIL+VN
Sbjct: 90 EIKLIKGPKGLGFSIAGGVGNQHIPGDNSIYVTKIIEGGAAHKDGRLQIGDKILAVNSVG 149
Query: 332 LKNLLHQDAVDLFRNAGYTVSLRV 403
L++++H+DAV +N V L+V
Sbjct: 150 LEDVMHEDAVAALKNTYDVVYLKV 173
Score = 79.3 bits (194), Expect = 3e-15
Identities = 44/99 (44%), Positives = 59/99 (59%)
Frame = +2
Query: 122 GRVDYLVTEEEISLTRGPSGLGFNIVGGTDQQYVSNDSGIFVSRIKENGAAALDGRLQEG 301
G D I + RG +GLGFNIVGG D + GIF+S I G A L G L++G
Sbjct: 233 GEEDIPREPRRIVIHRGSTGLGFNIVGGEDGE------GIFISFILAGGPADLSGELRKG 286
Query: 302 DKILSVNGQDLKNLLHQDAVDLFRNAGYTVSLRVQHRSQ 418
D+ILSVNG DL+N H+ A +NAG TV++ Q++ +
Sbjct: 287 DQILSVNGVDLRNASHEQAAIALKNAGQTVTIIAQYKPE 325
Score = 75.9 bits (185), Expect = 3e-14
Identities = 38/81 (46%), Positives = 51/81 (62%)
Frame = +2
Query: 170 GPSGLGFNIVGGTDQQYVSNDSGIFVSRIKENGAAALDGRLQEGDKILSVNGQDLKNLLH 349
G SGLGF+I GGTD ++ +D IF+++I GAAA DGRL+ D IL VN D++ + H
Sbjct: 1 GNSGLGFSIAGGTDNPHIGDDPSIFITKIIPGGAAAQDGRLRVNDSILFVNEVDVREVTH 60
Query: 350 QDAVDLFRNAGYTVSLRVQHR 412
AV+ + AG V L V R
Sbjct: 61 SAAVEALKEAGSIVRLYVMRR 81
>ref|XP_003135199.2| PREDICTED: disks large homolog 3 [Sus scrofa].
Length = 992
Score = 83.2 bits (204), Expect = 2e-16
Identities = 44/94 (46%), Positives = 59/94 (62%)
Frame = +2
Query: 131 DYLVTEEEISLTRGPSGLGFNIVGGTDQQYVSNDSGIFVSRIKENGAAALDGRLQEGDKI 310
D + EEI L RG SGLGF+I GG D +V +D GIF+++I GAAA+DGRL D +
Sbjct: 124 DGMFKYEEIVLERGNSGLGFSIAGGIDNPHVPDDPGIFITKIIPGGAAAMDGRLGVNDCV 183
Query: 311 LSVNGQDLKNLLHQDAVDLFRNAGYTVSLRVQHR 412
L VN D+ ++H AV+ + AG V L V+ R
Sbjct: 184 LRVNEVDVSEVVHSRAVEALKEAGPVVRLVVRRR 217
Score = 82.0 bits (201), Expect = 4e-16
Identities = 37/84 (44%), Positives = 59/84 (70%)
Frame = +2
Query: 152 EISLTRGPSGLGFNIVGGTDQQYVSNDSGIFVSRIKENGAAALDGRLQEGDKILSVNGQD 331
E++L +GP GLGF+I GG Q++ D+ I++++I E GAA DGRLQ GD++L+VN +
Sbjct: 226 EVNLLKGPKGLGFSIAGGIGNQHIPGDNSIYITKIIEGGAAQKDGRLQIGDRLLAVNNTN 285
Query: 332 LKNLLHQDAVDLFRNAGYTVSLRV 403
L+++ H++AV +N V L+V
Sbjct: 286 LQDVRHEEAVASLKNTSDMVYLKV 309
Score = 77.4 bits (189), Expect(2) = 3e-15
Identities = 49/127 (38%), Positives = 67/127 (52%), Gaps = 1/127 (0%)
Frame = +2
Query: 41 PPADFH-LPRHELLLLQVGKPDKQ*NMNGRVDYLVTEEEISLTRGPSGLGFNIVGGTDQQ 217
PPA + +PRH L D+ +I L +G +GLGFNIVGG D +
Sbjct: 363 PPARYSPIPRHML---------------AEEDFTREPRKIILHKGSTGLGFNIVGGEDGE 407
Query: 218 YVSNDSGIFVSRIKENGAAALDGRLQEGDKILSVNGQDLKNLLHQDAVDLFRNAGYTVSL 397
GIFVS I G A L G L+ GD+ILSVNG +L+N H+ A + AG +V++
Sbjct: 408 ------GIFVSFILAGGPADLSGELRRGDRILSVNGVNLRNATHEQAAAALKRAGQSVTI 461
Query: 398 RVQHRSQ 418
Q+R +
Sbjct: 462 VAQYRPE 468
Score = 22.3 bits (46), Expect(2) = 3e-15
Identities = 9/18 (50%), Positives = 11/18 (61%)
Frame = +1
Query: 394 PESAAQVTGAEWACGTSR 447
PE A GAE +CG +R
Sbjct: 467 PEGPATAPGAEVSCGLAR 484
>ref|XP_003353569.1| PREDICTED: LOW QUALITY PROTEIN: multiple PDZ domain protein-like [Sus
scrofa].
Length = 2034
Score = 73.9 bits (180), Expect = 1e-13
Identities = 38/85 (44%), Positives = 56/85 (65%)
Frame = +2
Query: 149 EEISLTRGPSGLGFNIVGGTDQQYVSNDSGIFVSRIKENGAAALDGRLQEGDKILSVNGQ 328
+ I+L RGP GLGF+IVGG + D I+V + GAA+ DGRL+ GD+I++VNGQ
Sbjct: 1950 KSITLDRGPDGLGFSIVGGYGSPH--GDLPIYVKTVFAKGAASEDGRLKRGDQIIAVNGQ 2007
Query: 329 DLKNLLHQDAVDLFRNAGYTVSLRV 403
L+ + H++AV + + TV+L V
Sbjct: 2008 SLEGVTHEEAVAILKRTKGTVTLMV 2032
Score = 64.7 bits (156), Expect = 7e-11
Identities = 35/100 (35%), Positives = 56/100 (56%)
Frame = +2
Query: 152 EISLTRGPSGLGFNIVGGTDQQYVSNDSGIFVSRIKENGAAALDGRLQEGDKILSVNGQD 331
++ LT+ GLG I G + + SGIFV I ++ A DGR+Q GD+I++V+G +
Sbjct: 398 DVELTKNVQGLGITIAGYIGDKKLE-PSGIFVKSITKSSAVEHDGRIQIGDQIIAVDGTN 456
Query: 332 LKNLLHQDAVDLFRNAGYTVSLRVQHRSQVQNGPVGHQGD 451
L+ +Q AV++ R+ G TV L + R Q + + D
Sbjct: 457 LQGFTNQQAVEVLRHTGQTVHLTLMRRGMKQEAELTSRED 496
Score = 63.9 bits (154), Expect = 1e-10
Identities = 34/84 (40%), Positives = 47/84 (55%)
Frame = +2
Query: 146 EEEISLTRGPSGLGFNIVGGTDQQYVSNDSGIFVSRIKENGAAALDGRLQEGDKILSVNG 325
E I +++G +GLG +IVGG D I + + E GAA DGRL GD+IL VNG
Sbjct: 1620 ETTIEISKGRTGLGLSIVGGADTLL----GAIIIHEVYEEGAACKDGRLWAGDQILEVNG 1675
Query: 326 QDLKNLLHQDAVDLFRNAGYTVSL 397
DL+ H +A+++ R V L
Sbjct: 1676 IDLRKATHDEAINVLRQTPQRVRL 1699
Score = 57.4 bits (137), Expect = 1e-08
Identities = 32/81 (39%), Positives = 46/81 (56%)
Frame = +2
Query: 155 ISLTRGPSGLGFNIVGGTDQQYVSNDSGIFVSRIKENGAAALDGRLQEGDKILSVNGQDL 334
I L +G SGLG ++ G D+ +S +F+ I NGAA DGRLQ D++L +NGQ L
Sbjct: 1344 IELEKGRSGLGLSLAGNKDRSRMS----VFIVGIDPNGAAGKDGRLQIADELLEINGQIL 1399
Query: 335 KNLLHQDAVDLFRNAGYTVSL 397
HQ+A + + A V +
Sbjct: 1400 YGRSHQNASSIIKCAPSKVKI 1420
Score = 57.0 bits (136), Expect = 2e-08
Identities = 35/89 (39%), Positives = 50/89 (56%), Gaps = 5/89 (5%)
Frame = +2
Query: 155 ISLTRGPS-GLGFNIVGGTDQ-QYVSNDS---GIFVSRIKENGAAALDGRLQEGDKILSV 319
+ L R PS LG +IVGG +SN GIF+ + E+ A +G L+ GD+I+ V
Sbjct: 1145 VELWREPSKSLGISIVGGRGMGSRLSNGEVMRGIFIKHVLEDSPAGKNGTLKPGDRIVEV 1204
Query: 320 NGQDLKNLLHQDAVDLFRNAGYTVSLRVQ 406
+G DL++ H+ AV+ R AG V VQ
Sbjct: 1205 DGMDLRDASHEQAVEAIRKAGNPVVFMVQ 1233
Score = 54.3 bits (129), Expect = 1e-07
Identities = 31/74 (41%), Positives = 44/74 (59%), Gaps = 1/74 (1%)
Frame = +2
Query: 155 ISLTRGPS-GLGFNIVGGTDQQYVSNDSGIFVSRIKENGAAALDGRLQEGDKILSVNGQD 331
I L + P GLG +IVG ND+G+FVS I + G A DGRL +GD+IL VNG+D
Sbjct: 1719 IELQKKPGKGLGLSIVGKR------NDTGVFVSDIVKGGIADADGRLMQGDQILMVNGED 1772
Query: 332 LKNLLHQDAVDLFR 373
+++ + L +
Sbjct: 1773 VRHATQEAVAALLK 1786
Score = 53.1 bits (126), Expect = 2e-07
Identities = 33/109 (30%), Positives = 57/109 (52%), Gaps = 1/109 (0%)
Frame = +2
Query: 155 ISLTRGPS-GLGFNIVGGTDQQYVSNDSGIFVSRIKENGAAALDGRLQEGDKILSVNGQD 331
+ + +GPS LG +I GG D IF++ + NG AA +L+ GD+I+++ G
Sbjct: 1827 VEIKKGPSDSLGISIAGGVGSPL--GDVPIFIAMMHPNGVAAQTQKLRVGDRIVTICGTS 1884
Query: 332 LKNLLHQDAVDLFRNAGYTVSLRVQHRSQVQNGPVGHQGDGEPSGIPIT 478
+ + H AV+L +NA ++ ++V V + GHQ + S + T
Sbjct: 1885 TEGMTHTQAVNLLKNAPGSIEMQVVAGGDV-SVVTGHQQEPVTSSLSFT 1932
Score = 48.9 bits (115), Expect = 4e-06
Identities = 30/85 (35%), Positives = 37/85 (43%)
Frame = +2
Query: 149 EEISLTRGPSGLGFNIVGGTDQQYVSNDSGIFVSRIKENGAAALDGRLQEGDKILSVNGQ 328
E I L SGLGF IVGG +G+ V I G A GRL GD IL +
Sbjct: 277 ETIELVNDGSGLGFGIVGG-------KATGVIVKTILPGGVADQHGRLCSGDHILKIGDT 329
Query: 329 DLKNLLHQDAVDLFRNAGYTVSLRV 403
DL + + + R G V L +
Sbjct: 330 DLAGMSSEQVAQVLRQCGNRVKLMI 354
>ref|XP_003360899.1| PREDICTED: inaD-like protein-like, partial [Sus scrofa].
Length = 403
Score = 67.8 bits (164), Expect = 9e-12
Identities = 38/83 (45%), Positives = 53/83 (63%)
Frame = +2
Query: 155 ISLTRGPSGLGFNIVGGTDQQYVSNDSGIFVSRIKENGAAALDGRLQEGDKILSVNGQDL 334
I+L +G GLGF+IVGG + D I+V I GAAA DGRL+ GD+IL+VNG+ L
Sbjct: 321 ITLEKGSEGLGFSIVGGYGSPH--GDLPIYVKTIFAKGAAADDGRLKRGDQILAVNGETL 378
Query: 335 KNLLHQDAVDLFRNAGYTVSLRV 403
+ + H+ AV + ++ TV L V
Sbjct: 379 EGVTHEQAVAILKHQRGTVVLTV 401
Score = 60.5 bits (145), Expect = 1e-09
Identities = 44/122 (36%), Positives = 62/122 (50%), Gaps = 18/122 (14%)
Frame = +2
Query: 179 GLGFNIVGGTDQQYVSNDSGIFVSRIKENGAAALDGRLQEGDKILSVNGQDLKNL----- 343
GLG +IVG N SG+F+S I + GAA LDGRL +GD+ILSVNG+D+++
Sbjct: 84 GLGLSIVGKR------NGSGVFISDIVKGGAADLDGRLIQGDQILSVNGEDMRSASQETV 137
Query: 344 ---------LHQDAVDLFRNAGYTVSLRVQHRSQVQNGPVGHQ---GDGEPSG-IPITVV 484
L Q + R +T S + SQ + +G G G P G IPI +
Sbjct: 138 ATILKCAQGLVQLEIGRLRAGSWTSSRKTSQNSQELSDALGISIAGGKGSPLGDIPIFIA 197
Query: 485 LV 490
++
Sbjct: 198 MI 199
Score = 55.1 bits (131), Expect = 6e-08
Identities = 31/81 (38%), Positives = 47/81 (58%)
Frame = +2
Query: 182 LGFNIVGGTDQQYVSNDSGIFVSRIKENGAAALDGRLQEGDKILSVNGQDLKNLLHQDAV 361
LG +I GG D IF++ I+ +G AA +LQ GD+I+S+NGQ L L H D V
Sbjct: 177 LGISIAGGKGSPL--GDIPIFIAMIQASGVAARTQKLQVGDRIVSINGQPLDGLSHADVV 234
Query: 362 DLFRNAGYTVSLRVQHRSQVQ 424
+L +NA + L+ + +V+
Sbjct: 235 NLLKNAYGRIILQSEDLREVK 255
Score = 48.9 bits (115), Expect = 4e-06
Identities = 25/55 (45%), Positives = 33/55 (60%)
Frame = +2
Query: 239 IFVSRIKENGAAALDGRLQEGDKILSVNGQDLKNLLHQDAVDLFRNAGYTVSLRV 403
I + + E GAAA DGRL GD+IL VNG DL++ H++A+ R V L V
Sbjct: 3 IVIHEVYEEGAAARDGRLWAGDQILEVNGIDLRSASHEEAITALRQTPQKVRLVV 57
>ref|XP_003126660.1| PREDICTED: PDZ domain-containing RING finger protein 4-like isoform
1 [Sus scrofa].
Length = 1042
Score = 66.2 bits (160), Expect = 3e-11
Identities = 38/98 (38%), Positives = 55/98 (56%), Gaps = 3/98 (3%)
Frame = +2
Query: 155 ISLTRGPSGLGFNIVGGTDQQYVSNDS---GIFVSRIKENGAAALDGRLQEGDKILSVNG 325
I L R LGFNI+GG Q ++ GI+VS+I +NG A L+ DKI+ VNG
Sbjct: 231 IVLERENDTLGFNIIGGRPNQNNQEETSMEGIYVSKISQNGPADRADGLEIHDKIIEVNG 290
Query: 326 QDLKNLLHQDAVDLFRNAGYTVSLRVQHRSQVQNGPVG 439
+DL H++AV+ FRNA + ++V R+ + G
Sbjct: 291 KDLSKATHEEAVEAFRNAKEPIVVQVLRRTPLNKPAYG 328
Score = 54.3 bits (129), Expect = 1e-07
Identities = 27/70 (38%), Positives = 41/70 (58%)
Frame = +2
Query: 131 DYLVTEEEISLTRGPSGLGFNIVGGTDQQYVSNDSGIFVSRIKENGAAALDGRLQEGDKI 310
D+ E E+ LG + TD + DSGI+VS + N AA DGR++EGD+I
Sbjct: 403 DFEYEEVELCRVSSQEKLGLTVCYRTDDE---EDSGIYVSEVDPNSIAAKDGRIREGDRI 459
Query: 311 LSVNGQDLKN 340
L +NG+D+++
Sbjct: 460 LQINGEDVQD 469
>ref|XP_003359788.1| PREDICTED: PDZ domain-containing protein 2 [Sus scrofa].
Length = 2696
Score = 64.7 bits (156), Expect = 7e-11
Identities = 34/65 (52%), Positives = 43/65 (66%)
Frame = +2
Query: 179 GLGFNIVGGTDQQYVSNDSGIFVSRIKENGAAALDGRLQEGDKILSVNGQDLKNLLHQDA 358
GLGF+I GG D + GIFV I NG+AA DGRL+EGD+IL VNG +K L Q+A
Sbjct: 305 GLGFSIAGGRD--CIRGQMGIFVKTIFPNGSAAEDGRLKEGDEILDVNGIPIKGLTFQEA 362
Query: 359 VDLFR 373
+ F+
Sbjct: 363 IHTFK 367
Score = 55.8 bits (133), Expect = 3e-08
Identities = 32/84 (38%), Positives = 48/84 (57%)
Frame = +2
Query: 152 EISLTRGPSGLGFNIVGGTDQQYVSNDSGIFVSRIKENGAAALDGRLQEGDKILSVNGQD 331
++ L + GLG + GG + + I V+++KE GAA DGRL GD++L +NG
Sbjct: 42 KMELLKESDGLGIQVSGGRGSK--RSPHAIVVTQVKEGGAAHRDGRLSLGDELLVINGHL 99
Query: 332 LKNLLHQDAVDLFRNAGYTVSLRV 403
L L H++AV + R+A V L V
Sbjct: 100 LVGLSHEEAVAILRSATGVVQLVV 123
Score = 52.8 bits (125), Expect = 3e-07
Identities = 27/68 (39%), Positives = 38/68 (55%)
Frame = +2
Query: 176 SGLGFNIVGGTDQQYVSNDSGIFVSRIKENGAAALDGRLQEGDKILSVNGQDLKNLLHQD 355
SGLGF++ GGTD + + V R+ GAA+ +G + GD +LSVNG L L H D
Sbjct: 2289 SGLGFSVAGGTDVE----PKAVVVHRVFSQGAASQEGTVSRGDFLLSVNGTSLAGLAHGD 2344
Query: 356 AVDLFRNA 379
+ + A
Sbjct: 2345 VLKVLHQA 2352
Score = 52.8 bits (125), Expect = 3e-07
Identities = 25/74 (33%), Positives = 46/74 (62%)
Frame = +2
Query: 155 ISLTRGPSGLGFNIVGGTDQQYVSNDSGIFVSRIKENGAAALDGRLQEGDKILSVNGQDL 334
+ + + +GLG ++ GG +S D +FV R+ + GAA G ++ GD+IL++NG+ L
Sbjct: 2409 VEVLKTSAGLGLSLDGGKSS--MSGDGPLFVKRVYKGGAAEQAGTIEAGDEILAINGKSL 2466
Query: 335 KNLLHQDAVDLFRN 376
L+H DA ++ ++
Sbjct: 2467 VGLVHFDAWNIMKS 2480
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 24,646,492
Number of extensions: 679654
Number of successful extensions: 2604
Number of sequences better than 1.0e-05: 46
Number of HSP's gapped: 2556
Number of HSP's successfully gapped: 80
Length of query: 322
Length of database: 11,343,932
Length adjustment: 99
Effective length of query: 223
Effective length of database: 8,879,129
Effective search space: 1980045767
Effective search space used: 1980045767
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 33 (17.3 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-004159
(967 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr07 1023 0.0
>Sscrofa_Chr07
|| Length = 134764511
Score = 1023 bits (516), Expect = 0.0
Identities = 540/548 (98%)
Strand = Plus / Plus
Query: 412 gtcacaggtgcagaatgggcctgtgggacatcaaggtgatggggaaccaagtggtattcc 471
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 100246741 gtcacaggtgcagaatgggcctgtgggacatcaaggtgatggggaaccaagtggtattcc 100246800
Query: 472 cataactgtggtgctggtgccagtgtttgccctcatcatggtagcagcctgggccttcat 531
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 100246801 cataactgtggtgctggtgccagtgtttgccctcatcatggtagcagcctgggccttcat 100246860
Query: 532 gagataccgccatcaaccttgaaaagctcgctttcttccagtgctcccaaagaagaacac 591
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 100246861 gagataccgccatcaaccttgaaaagctcgctttcttccagtgctcccaaagaagaacac 100246920
Query: 592 acatccctttctctgaccttcctcccctgccgttctcccataactttcccttccccacat 651
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 100246921 acatccctttctctgaccttcctcccctgccgttctcccataactttcccttccccacat 100246980
Query: 652 ggccaactcatgatttaaagagactgttacccaaccagaaccttgctgtttgaaatcttt 711
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 100246981 ggccaactcatgatttaaagagactgttacccaaccagaaccttgctgtttgaaatcttt 100247040
Query: 712 ggtgggagagtaaaggcattgtttgaaggaaaactgaagaaaggacttgcttggaacaaa 771
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 100247041 ggtgggagagtaaaggcattgtttgaaggaaaactgaagaaaggacttgcttggaacaaa 100247100
Query: 772 tgaagagttatttatgttagtaggaccgccagaagttcagctataacccaaaaaagaaaa 831
|||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||
Sbjct: 100247101 tgaagagttatttatgttagtaggaccgccagaagttcagctataacccaaagaggaaaa 100247160
Query: 832 ggcccagtcttctcatcaccatgggtgattctttcttttcctagctggcatgtgtcaaag 891
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 100247161 ggcccagtcttctcatcaccatgggtgattctttcttttcttagctggcatgtgtcaaag 100247220
Query: 892 gcccagcataagagaaagtaaggatttttcctttcattaatcttccttgggaagtttctg 951
||| |||||||||||||||||||||||| ||||| |||||||||||||||||||||||
Sbjct: 100247221 gccagccataagagaaagtaaggatttttcttttcaataatcttccttgggaagtttctg 100247280
Query: 952 tggccttt 959
||||||||
Sbjct: 100247281 tggccttt 100247288
Score = 357 bits (180), Expect = 7e-96
Identities = 180/180 (100%)
Strand = Plus / Minus
Query: 2 aaactgaaagtgctgggcttctggcgctagacgccaggccccccggcggattttcatctc 61
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 100286378 aaactgaaagtgctgggcttctggcgctagacgccaggccccccggcggattttcatctc 100286319
Query: 62 ccccgtcacgagctgttgctgcttcaagttgggaagccagacaaacagtaaaatatgaac 121
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 100286318 ccccgtcacgagctgttgctgcttcaagttgggaagccagacaaacagtaaaatatgaac 100286259
Query: 122 ggaagagtggattatttggttactgaggaagaaatcagtctcaccagaggaccctcaggt 181
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 100286258 ggaagagtggattatttggttactgaggaagaaatcagtctcaccagaggaccctcaggt 100286199
Score = 280 bits (141), Expect = 1e-72
Identities = 141/141 (100%)
Strand = Plus / Plus
Query: 178 aggtctgggcttcaacatcgtcggtgggacagatcagcagtatgtctccaatgacagtgg 237
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 100228875 aggtctgggcttcaacatcgtcggtgggacagatcagcagtatgtctccaatgacagtgg 100228934
Query: 238 catcttcgtcagccgcatcaaagagaatggggctgcagccctggatgggcggctccagga 297
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 100228935 catcttcgtcagccgcatcaaagagaatggggctgcagccctggatgggcggctccagga 100228994
Query: 298 gggtgataagatcctctcggt 318
|||||||||||||||||||||
Sbjct: 100228995 gggtgataagatcctctcggt 100229015
Score = 192 bits (97), Expect = 2e-46
Identities = 97/97 (100%)
Strand = Plus / Plus
Query: 316 ggtaaatggccaggacctaaagaacctgctgcaccaggatgctgtagacctctttcgtaa 375
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 100236140 ggtaaatggccaggacctaaagaacctgctgcaccaggatgctgtagacctctttcgtaa 100236199
Query: 376 tgcaggctacactgtgtccctgagagtgcagcacagg 412
|||||||||||||||||||||||||||||||||||||
Sbjct: 100236200 tgcaggctacactgtgtccctgagagtgcagcacagg 100236236
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 34,414,777
Number of extensions: 393
Number of successful extensions: 393
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 393
Number of HSP's successfully gapped: 4
Length of query: 967
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 946
Effective length of database: 2,808,413,156
Effective search space: 2656758845576
Effective search space used: 2656758845576
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 29 (58.0 bits)