Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-004165
(1197 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001179732.1| 80 kDa MCM3-associated protein [Bos taurus]. 86 7e-17
Alignment gi|XP_002685206.1| PREDICTED: minichromosome maintenance comple... 86 7e-17
>ref|NP_001179732.1| 80 kDa MCM3-associated protein [Bos taurus].
Length = 1979
Score = 85.9 bits (211), Expect = 7e-17
Identities = 69/247 (27%), Positives = 101/247 (40%), Gaps = 5/247 (2%)
Frame = +1
Query: 151 LGTCLDMCPANERTRREKECRLHRFEVAPGCPGDRPRADPQRAVKEYXXXXXXXXXXXXS 330
+GTCLDMCP ER RE +L FEV PG + D AVKEY
Sbjct: 632 VGTCLDMCPEKERYMRETRSQLSVFEVVPG----TDQVDHAAAVKEYSRSSADQEEPLPH 687
Query: 331 QLRPPSVLLATVRYLAGEVAERTDASRAEVASFXXXXXXXXXXXXXXQGAGDXXXXXXXX 510
+LRP VL T+ YL ++ ++T+ + F Q D
Sbjct: 688 ELRPSGVLSRTMDYLVTQIMDQTEGGLRDWYDFLWNRTRGIRKDITQQHLCDPLTVSLIE 747
Query: 511 XXXXXXXXXXXRL--EPNASHGLADPMLLQAQVQESFGSLRRCY--ALGAGPH-PRQATF 675
+ EP +S D + + + SL+ Y G +A F
Sbjct: 748 KCTRFHIHCAHFMCEEPMSSF---DAKINNENMTKCLQSLKEMYQDLRNKGVFCASEAEF 804
Query: 676 QGLFLLYNLGSVEALHEVLQLPAALRSCPALRTALAVDSAFREGNAARLFRLLRSLPYLQ 855
QG +L NL + L EV Q A+R+ P ++ A+ +A N R F+L++S YL
Sbjct: 805 QGYNVLLNLNKGDILREVQQFHPAVRNSPEVKFAVQAFAALNSNNFVRFFKLVQSASYLN 864
Query: 856 SCAVQCH 876
+C + C+
Sbjct: 865 ACLLHCY 871
>ref|XP_002685206.1| PREDICTED: minichromosome maintenance complex component 3 associated
protein [Bos taurus].
Length = 1979
Score = 85.9 bits (211), Expect = 7e-17
Identities = 69/247 (27%), Positives = 101/247 (40%), Gaps = 5/247 (2%)
Frame = +1
Query: 151 LGTCLDMCPANERTRREKECRLHRFEVAPGCPGDRPRADPQRAVKEYXXXXXXXXXXXXS 330
+GTCLDMCP ER RE +L FEV PG + D AVKEY
Sbjct: 632 VGTCLDMCPEKERYMRETRSQLSVFEVVPG----TDQVDHAAAVKEYSRSSADQEEPLPH 687
Query: 331 QLRPPSVLLATVRYLAGEVAERTDASRAEVASFXXXXXXXXXXXXXXQGAGDXXXXXXXX 510
+LRP VL T+ YL ++ ++T+ + F Q D
Sbjct: 688 ELRPSGVLSRTMDYLVTQIMDQTEGGLRDWYDFLWNRTRGIRKDITQQHLCDPLTVSLIE 747
Query: 511 XXXXXXXXXXXRL--EPNASHGLADPMLLQAQVQESFGSLRRCY--ALGAGPH-PRQATF 675
+ EP +S D + + + SL+ Y G +A F
Sbjct: 748 KCTRFHIHCAHFMCEEPMSSF---DAKINNENMTKCLQSLKEMYQDLRNKGVFCASEAEF 804
Query: 676 QGLFLLYNLGSVEALHEVLQLPAALRSCPALRTALAVDSAFREGNAARLFRLLRSLPYLQ 855
QG +L NL + L EV Q A+R+ P ++ A+ +A N R F+L++S YL
Sbjct: 805 QGYNVLLNLNKGDILREVQQFHPAVRNSPEVKFAVQAFAALNSNNFVRFFKLVQSASYLN 864
Query: 856 SCAVQCH 876
+C + C+
Sbjct: 865 ACLLHCY 871
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 44,718,025
Number of extensions: 1355526
Number of successful extensions: 8751
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 8671
Number of HSP's successfully gapped: 2
Length of query: 399
Length of database: 17,681,374
Length adjustment: 104
Effective length of query: 295
Effective length of database: 14,240,222
Effective search space: 4200865490
Effective search space used: 4200865490
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-004165
(1197 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_540873.2| PREDICTED: similar to SAC3 domain containing 1 ... 325 4e-89
Alignment gi|XP_537925.2| PREDICTED: similar to minichromosome maintenanc... 80 5e-15
>ref|XP_540873.2| PREDICTED: similar to SAC3 domain containing 1 [Canis familiaris].
Length = 358
Score = 325 bits (834), Expect = 4e-89
Identities = 176/269 (65%), Positives = 183/269 (68%)
Frame = +1
Query: 130 MPGYELPLGTCLDMCPANERTRREKECRLHRFEVAPGCPGDRPRADPQRAVKEYXXXXXX 309
MPG ELP+GTC DMCPA ER REKE RLHRFEVAPGC D PRADP+RAVKEY
Sbjct: 1 MPGCELPVGTCPDMCPAAERAEREKERRLHRFEVAPGCRSDPPRADPRRAVKEYQRPAAG 60
Query: 310 XXXXXXSQLRPPSVLLATVRYLAGEVAERTDASRAEVASFXXXXXXXXXXXXXXQGAGDX 489
SQLRPP VLLATVRYLAGEVAER DASRAEVASF QGA
Sbjct: 61 KARPLPSQLRPPRVLLATVRYLAGEVAERADASRAEVASFVADRLRAVRLDLALQGADGV 120
Query: 490 XXXXXXXXXXXXXXXXXXRLEPNASHGLADPMLLQAQVQESFGSLRRCYALGAGPHPRQA 669
RL P+ + G ADP+LLQAQVQE FGSLRRCYA GAG PRQA
Sbjct: 121 EAAAVLEAALAVLLAVVARLGPDGTRGPADPVLLQAQVQEGFGSLRRCYAQGAGSRPRQA 180
Query: 670 TFQGLFLLYNLGSVEALHEVLQLPAALRSCPALRTALAVDSAFREGNAARLFRLLRSLPY 849
FQGLFLLYNLGSVEALHEVLQLP ALRSCPALR ALAVDSAFREGN ARLFRLLR LPY
Sbjct: 181 AFQGLFLLYNLGSVEALHEVLQLPDALRSCPALRRALAVDSAFREGNTARLFRLLRILPY 240
Query: 850 LQSCAVQCHVXXXXXXXXXXXXXXXSTPK 936
LQSCAV+CH+ STPK
Sbjct: 241 LQSCAVRCHIGRARRGALARLARALSTPK 269
>ref|XP_537925.2| PREDICTED: similar to minichromosome maintenance protein 3 associated
protein [Canis familiaris].
Length = 1989
Score = 79.7 bits (195), Expect = 5e-15
Identities = 67/247 (27%), Positives = 100/247 (40%), Gaps = 5/247 (2%)
Frame = +1
Query: 151 LGTCLDMCPANERTRREKECRLHRFEVAPGCPGDRPRADPQRAVKEYXXXXXXXXXXXXS 330
+GTC DMCP ER RE +L FEV PG + D AVKEY
Sbjct: 634 VGTCPDMCPEKERYMRETRSQLSVFEVVPG----TDQVDHAAAVKEYSRSSADQEEPLPH 689
Query: 331 QLRPPSVLLATVRYLAGEVAERTDASRAEVASFXXXXXXXXXXXXXXQGAGDXXXXXXXX 510
+LRP +VL T+ YL ++ ++ + S + F Q D
Sbjct: 690 ELRPSAVLSRTMDYLVTQIMDQKEGSLRDWYDFVWNRTRGIRKDITQQHLCDPVTVSLIE 749
Query: 511 XXXXXXXXXXXRL--EPNASHGLADPMLLQAQVQESFGSLRRCY--ALGAGPH-PRQATF 675
+ EP +S D + + + SL+ Y G +A F
Sbjct: 750 KCTRFHIHCAHFMCEEPMSSF---DAKINNENMTKCLQSLKEMYQDLRNKGVFCASEAEF 806
Query: 676 QGLFLLYNLGSVEALHEVLQLPAALRSCPALRTALAVDSAFREGNAARLFRLLRSLPYLQ 855
QG +L NL + L EV Q A+R+ ++ A+ +A N R F+L++S YL
Sbjct: 807 QGYNVLLNLNKGDILREVQQFHPAVRNSSEVKFAVQAFAALNSNNFVRFFKLVQSASYLN 866
Query: 856 SCAVQCH 876
+C + C+
Sbjct: 867 ACLLHCY 873
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 46,388,913
Number of extensions: 1353539
Number of successful extensions: 9042
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 8949
Number of HSP's successfully gapped: 2
Length of query: 399
Length of database: 18,874,504
Length adjustment: 105
Effective length of query: 294
Effective length of database: 15,374,224
Effective search space: 4520021856
Effective search space used: 4520021856
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-004165
(1197 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_037431.3| SAC3 domain-containing protein 1 [Homo sapiens]. 328 6e-90
Alignment gi|NP_003897.2| 80 kDa MCM3-associated protein [Homo sapiens]. 79 8e-15
>ref|NP_037431.3| SAC3 domain-containing protein 1 [Homo sapiens].
Length = 358
Score = 328 bits (841), Expect = 6e-90
Identities = 175/269 (65%), Positives = 186/269 (69%)
Frame = +1
Query: 130 MPGYELPLGTCLDMCPANERTRREKECRLHRFEVAPGCPGDRPRADPQRAVKEYXXXXXX 309
MPG ELP+GTC DMCPA ER +RE+E RLHR EV PGC D PRADPQRAVKEY
Sbjct: 1 MPGCELPVGTCPDMCPAAERAQREREHRLHRLEVVPGCRQDPPRADPQRAVKEYSRPAAG 60
Query: 310 XXXXXXSQLRPPSVLLATVRYLAGEVAERTDASRAEVASFXXXXXXXXXXXXXXQGAGDX 489
SQLRPPSVLLATVRYLAGEVAE D +RAEVASF QGAGD
Sbjct: 61 KPRPPPSQLRPPSVLLATVRYLAGEVAESADIARAEVASFVADRLRAVLLDLALQGAGDA 120
Query: 490 XXXXXXXXXXXXXXXXXXRLEPNASHGLADPMLLQAQVQESFGSLRRCYALGAGPHPRQA 669
RL P+A+ G ADP+LLQAQVQE FGSLRRCYA GAGPHPRQ
Sbjct: 121 EAAVVLEAALATLLTVVARLGPDAARGPADPVLLQAQVQEGFGSLRRCYARGAGPHPRQP 180
Query: 670 TFQGLFLLYNLGSVEALHEVLQLPAALRSCPALRTALAVDSAFREGNAARLFRLLRSLPY 849
FQGLFLLYNLGSVEALHEVLQLPAALR+CP LR ALAVD+AFREGNAARLFRLL++LPY
Sbjct: 181 AFQGLFLLYNLGSVEALHEVLQLPAALRACPPLRKALAVDAAFREGNAARLFRLLQTLPY 240
Query: 850 LQSCAVQCHVXXXXXXXXXXXXXXXSTPK 936
L SCAVQCHV STPK
Sbjct: 241 LPSCAVQCHVGHARREALARFARAFSTPK 269
>ref|NP_003897.2| 80 kDa MCM3-associated protein [Homo sapiens].
Length = 1980
Score = 79.0 bits (193), Expect = 8e-15
Identities = 67/247 (27%), Positives = 100/247 (40%), Gaps = 5/247 (2%)
Frame = +1
Query: 151 LGTCLDMCPANERTRREKECRLHRFEVAPGCPGDRPRADPQRAVKEYXXXXXXXXXXXXS 330
+GTCLDMCP ER RE +L FEV PG + D AVKEY
Sbjct: 634 VGTCLDMCPEKERYMRETRSQLSVFEVVPG----TDQVDHAAAVKEYSRSSADQEEPLPH 689
Query: 331 QLRPPSVLLATVRYLAGEVAERTDASRAEVASFXXXXXXXXXXXXXXQGAGDXXXXXXXX 510
+LRP VL T+ YL ++ ++ + S + F Q D
Sbjct: 690 ELRPLPVLSRTMDYLVTQIMDQKEGSLRDWYDFVWNRTRGIRKDITQQHLCDPLTVSLIE 749
Query: 511 XXXXXXXXXXXRL--EPNASHGLADPMLLQAQVQESFGSLRRCY--ALGAGPH-PRQATF 675
+ EP +S D + + + SL+ Y G +A F
Sbjct: 750 KCTRFHIHCAHFMCEEPMSSF---DAKINNENMTKCLQSLKEMYQDLRNKGVFCASEAEF 806
Query: 676 QGLFLLYNLGSVEALHEVLQLPAALRSCPALRTALAVDSAFREGNAARLFRLLRSLPYLQ 855
QG +L +L + L EV Q A+R+ ++ A+ +A N R F+L++S YL
Sbjct: 807 QGYNVLLSLNKGDILREVQQFHPAVRNSSEVKFAVQAFAALNSNNFVRFFKLVQSASYLN 866
Query: 856 SCAVQCH 876
+C + C+
Sbjct: 867 ACLLHCY 873
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 45,021,544
Number of extensions: 1287356
Number of successful extensions: 7721
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 7661
Number of HSP's successfully gapped: 2
Length of query: 399
Length of database: 18,297,164
Length adjustment: 105
Effective length of query: 294
Effective length of database: 14,835,944
Effective search space: 4361767536
Effective search space used: 4361767536
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-004165
(1197 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_598439.3| SAC3 domain-containing protein 1 [Mus musculus]. 291 9e-79
Alignment gi|NP_062307.2| 80 kDa MCM3-associated protein [Mus musculus]. 79 5e-15
>ref|NP_598439.3| SAC3 domain-containing protein 1 [Mus musculus].
Length = 427
Score = 291 bits (744), Expect = 9e-79
Identities = 159/271 (58%), Positives = 173/271 (63%)
Frame = +1
Query: 124 PPMPGYELPLGTCLDMCPANERTRREKECRLHRFEVAPGCPGDRPRADPQRAVKEYXXXX 303
P M G +LP+G C DMCPA ER RRE+E RLHR EV PG G+ PRADP+R VKEY
Sbjct: 71 PTMSGCKLPMGLCPDMCPAAERARRERERRLHRLEVEPGGRGNAPRADPKRTVKEYSRPA 130
Query: 304 XXXXXXXXSQLRPPSVLLATVRYLAGEVAERTDASRAEVASFXXXXXXXXXXXXXXQGAG 483
S LRPP VLLATVRYLAGEVA R D S AEVASF QG
Sbjct: 131 AGKPRPPPSLLRPPPVLLATVRYLAGEVAGRGDVSCAEVASFVADRLRAVRLDLSLQGVD 190
Query: 484 DXXXXXXXXXXXXXXXXXXXRLEPNASHGLADPMLLQAQVQESFGSLRRCYALGAGPHPR 663
D R+ P + G ADP+LLQ QVQE FGSLRRCYA G GP+PR
Sbjct: 191 DADAATVLEAALATLLAVVARVRPEETRGAADPVLLQTQVQEGFGSLRRCYARGKGPYPR 250
Query: 664 QATFQGLFLLYNLGSVEALHEVLQLPAALRSCPALRTALAVDSAFREGNAARLFRLLRSL 843
QA FQGLFLLYNLGSVEAL EVLQLPAALR+CP L+ ALAVD+AFRE N ARLFRLLR+L
Sbjct: 251 QAAFQGLFLLYNLGSVEALQEVLQLPAALRACPPLQAALAVDAAFREDNHARLFRLLRTL 310
Query: 844 PYLQSCAVQCHVXXXXXXXXXXXXXXXSTPK 936
PYLQSCAVQ H+ STPK
Sbjct: 311 PYLQSCAVQEHIGYARRKALARLSRALSTPK 341
>ref|NP_062307.2| 80 kDa MCM3-associated protein [Mus musculus].
Length = 1971
Score = 79.3 bits (194), Expect = 5e-15
Identities = 67/247 (27%), Positives = 99/247 (40%), Gaps = 5/247 (2%)
Frame = +1
Query: 151 LGTCLDMCPANERTRREKECRLHRFEVAPGCPGDRPRADPQRAVKEYXXXXXXXXXXXXS 330
+GTC DMCP ER RE +L FEV PG + D AVKEY
Sbjct: 627 VGTCPDMCPEKERYLRETRSQLSVFEVVPG----TDQVDHAAAVKEYSRSSADQEEPLPH 682
Query: 331 QLRPPSVLLATVRYLAGEVAERTDASRAEVASFXXXXXXXXXXXXXXQGAGDXXXXXXXX 510
+LRP +VL T+ YL ++ ++ + S + F Q D
Sbjct: 683 ELRPSAVLSRTMDYLVTQIMDQKEGSLRDWYDFVWNRTRGIRKDITQQHLCDPLTVSLIE 742
Query: 511 XXXXXXXXXXXRL--EPNASHGLADPMLLQAQVQESFGSLRRCY--ALGAGPH-PRQATF 675
+ EP +S D + + + SL+ Y G +A F
Sbjct: 743 KCTRFHIHCAHFMCEEPMSSF---DAKINNENMTKCLQSLKEMYQDLRNKGVFCASEAEF 799
Query: 676 QGLFLLYNLGSVEALHEVLQLPAALRSCPALRTALAVDSAFREGNAARLFRLLRSLPYLQ 855
QG +L NL + L EV Q +R+ P + A+ +A N R F+L++S YL
Sbjct: 800 QGYNVLLNLNKGDILREVQQFHPDVRNSPEVNFAVQAFAALNSNNFVRFFKLVQSASYLN 859
Query: 856 SCAVQCH 876
+C + C+
Sbjct: 860 ACLLHCY 866
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 37,447,225
Number of extensions: 1039787
Number of successful extensions: 5733
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 5678
Number of HSP's successfully gapped: 2
Length of query: 399
Length of database: 15,617,559
Length adjustment: 104
Effective length of query: 295
Effective length of database: 12,493,815
Effective search space: 3685675425
Effective search space used: 3685675425
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-004165
(1197 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_003122615.2| PREDICTED: SAC3 domain-containing protein 1-... 397 e-111
>ref|XP_003122615.2| PREDICTED: SAC3 domain-containing protein 1-like [Sus scrofa].
Length = 358
Score = 397 bits (1019), Expect = e-111
Identities = 208/269 (77%), Positives = 208/269 (77%)
Frame = +1
Query: 130 MPGYELPLGTCLDMCPANERTRREKECRLHRFEVAPGCPGDRPRADPQRAVKEYXXXXXX 309
MPGYELPLGTCLDMCPANERTRREKECRLHRFEVAPG PGDRPRADPQRAVKEY
Sbjct: 1 MPGYELPLGTCLDMCPANERTRREKECRLHRFEVAPGSPGDRPRADPQRAVKEYSRPAAG 60
Query: 310 XXXXXXSQLRPPSVLLATVRYLAGEVAERTDASRAEVASFXXXXXXXXXXXXXXQGAGDX 489
SQLRPPSVLLATVRYLAGEVAERTDASRAEVASF QGAGD
Sbjct: 61 KARPPPSQLRPPSVLLATVRYLAGEVAERTDASRAEVASFVADRLRAVRLDLALQGAGDA 120
Query: 490 XXXXXXXXXXXXXXXXXXRLEPNASHGLADPMLLQAQVQESFGSLRRCYALGAGPHPRQA 669
RLEPNASHGLADPMLLQAQVQESFGSLRRCYALGAGPHPRQA
Sbjct: 121 EAALVLEAALAVLLAVVARLEPNASHGLADPMLLQAQVQESFGSLRRCYALGAGPHPRQA 180
Query: 670 TFQGLFLLYNLGSVEALHEVLQLPAALRSCPALRTALAVDSAFREGNAARLFRLLRSLPY 849
TFQGLFLLYNLGSVEALHEVLQLPAALRSCPALRTALAVDSAFREGNAARLFRLLRSLPY
Sbjct: 181 TFQGLFLLYNLGSVEALHEVLQLPAALRSCPALRTALAVDSAFREGNAARLFRLLRSLPY 240
Query: 850 LQSCAVQCHVXXXXXXXXXXXXXXXSTPK 936
LQSCAVQCHV STPK
Sbjct: 241 LQSCAVQCHVGRARRGALARLARALSTPK 269
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 29,477,506
Number of extensions: 949914
Number of successful extensions: 5673
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 5630
Number of HSP's successfully gapped: 1
Length of query: 399
Length of database: 11,343,932
Length adjustment: 101
Effective length of query: 298
Effective length of database: 8,829,335
Effective search space: 2631141830
Effective search space used: 2631141830
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-004165
(1197 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr02 716 0.0
>Sscrofa_Chr02
|| Length = 162569375
Score = 716 bits (361), Expect = 0.0
Identities = 373/377 (98%)
Strand = Plus / Minus
Query: 328 agccagctgcgtccgccgtccgtcctgctggccaccgtgcgctatctggccggagaggtg 387
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6273440 agccagctgcgtccgccgtccgtcctgctggccaccgtgcgctatctggccggagaggtg 6273381
Query: 388 gccgagcgcaccgacgcatcccgcgccgaggtggccagcttcgtggcggaccggttgcgg 447
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 6273380 gccgagcgcaccgacgcatcccgcgcggaggtggccagcttcgtggcggaccggttgcgg 6273321
Query: 448 gcggtgcggctggacctggccctgcagggcgcgggtgacgccgaggcagcgctggtgctg 507
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6273320 gcggtgcggctggacctggccctgcagggcgcgggtgacgccgaggcagcgctggtgctg 6273261
Query: 508 gaagcggcgctggcagtgctgctggcggtggtggcgcggctcgaacccaacgcatcccac 567
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6273260 gaagcggcactggcagtgctgctggcggtggtggcgcggctcgaacccaacgcatcccac 6273201
Query: 568 gggctggctgatccgatgttgcttcaggcccaggtgcaggagagcttcggttctctgcgg 627
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6273200 gggctggctgatccgatgttgcttcaggcccaggtgcaggagagcttcggttctctgcgg 6273141
Query: 628 cgctgctacgcgctgggtgccgggccacatcctcgccaggccaccttccagggtctcttt 687
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 6273140 cgctgctacgcgctgggtgccgggccacaccctcgccaggccaccttccagggtctcttt 6273081
Query: 688 ctgctatataacctggg 704
||||| |||||||||||
Sbjct: 6273080 ctgctttataacctggg 6273064
Score = 513 bits (259), Expect = e-143
Identities = 321/335 (95%), Gaps = 5/335 (1%)
Strand = Plus / Minus
Query: 703 ggctccgtggaggcccttcacgaggttctgcagctgccggccgccctgcgttcctgcccg 762
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6271059 ggctccgtggaggcccttcacgaggttctgcagctgccggccgccctgcgttcctgcccg 6271000
Query: 763 gcgctgcgcaccgccctggcagtggactccgccttccgcgaaggcaacgctgcacgcctg 822
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6270999 gcgctgcgcaccgccctggcagtggactccgccttccgcgaaggcaacgctgcacgcctg 6270940
Query: 823 tttcgcctgctccgctccctgccctacctgcagagctgcgctgtccagtgtcatgtgggc 882
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6270939 tttcgcctgctccgctccctgccctacctgcagagctgcgctgtccagtgtcatgtgggc 6270880
Query: 883 cgtgcgcgccggggagccctggcccgcctcgctcgtgctctgagcacccccaagggtcaa 942
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6270879 cgtgcgcgccggggagccctggcccgcctcgctcgtgctctgagcacccccaagggtcag 6270820
Query: 943 acggggcccctggggcttcatggtccccctccgggcccctaaaggggccccaaggaagcc 1002
|||| |||||| |||||||||||||| ||||| || ||||| | ||| ||| |||| |||
Sbjct: 6270819 acggtgcccct-gggcttcatggtccacctcctgg-ccctagatggg-cccgaggaggcc 6270763
Query: 1003 cggggacctgtgccagggctcccggactgccctta 1037
| ||||||||||||| ||||| |||||||||||||
Sbjct: 6270762 c-gggacctgtgcca-ggctcacggactgccctta 6270730
Score = 331 bits (167), Expect = 5e-88
Identities = 170/171 (99%)
Strand = Plus / Minus
Query: 122 gcccacccatgcccggctacgagctgcctttgggcacgtgcctggatatgtgtccggcca 181
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6273646 gcccacccatgcccggctacgagctgcctttgggcacgtgcctggatatgtgtccggcca 6273587
Query: 182 acgagcgcacccggcgcgaaaaggagtgccgcctgcaccgcttcgaggtggcgccggggt 241
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6273586 acgagcgcacccggcgcgaaaaggagtgccgcctgcaccgcttcgaggtggcgccggggt 6273527
Query: 242 gccctggggaccggcctcgagccgacccgcagcgcgccgtgaaggaataca 292
||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6273526 cccctggggaccggcctcgagccgacccgcagcgcgccgtgaaggaataca 6273476
Score = 234 bits (118), Expect = 9e-59
Identities = 121/122 (99%)
Strand = Plus / Minus
Query: 1 gtgcatcatgggtgggctttagcgggacctgagcctaagggacagtcttgagcgctctga 60
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 6273931 gtgcatcatgggtgggctgtagcgggacctgagcctaagggacagtcttgagcgctctga 6273872
Query: 61 acggcaacgcagagcatctcgggaggcctgttcgaggatcagttggaaggcgaccggagt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6273871 acggcaacgcagagcatctcgggaggcctgttcgaggatcagttggaaggcgaccggagt 6273812
Query: 121 cg 122
||
Sbjct: 6273811 cg 6273810
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 21,114,270
Number of extensions: 115
Number of successful extensions: 115
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 114
Number of HSP's successfully gapped: 4
Length of query: 1197
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1176
Effective length of database: 2,808,413,156
Effective search space: 3302693871456
Effective search space used: 3302693871456
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)