Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-004169
(1345 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_002697393.1| PREDICTED: valyl-tRNA synthetase-like, parti... 843 0.0
Alignment gi|XP_581858.2| PREDICTED: valyl-tRNA synthetase-like [Bos taur... 843 0.0
Alignment gi|NP_001193724.1| isoleucyl-tRNA synthetase, mitochondrial [Bo... 104 2e-22
Alignment gi|NP_001094539.1| isoleucyl-tRNA synthetase, cytoplasmic [Bos ... 75 2e-13
>ref|XP_002697393.1| PREDICTED: valyl-tRNA synthetase-like, partial [Bos taurus].
Length = 999
Score = 843 bits (2179), Expect = 0.0
Identities = 418/448 (93%), Positives = 425/448 (94%)
Frame = +2
Query: 2 DTWFSSGLFPFSILGWPNQSEDLSVFYPGTLLETGHDILFFWVARMVMLGLKLTGKLPFK 181
DTWFSSGLFPFSILGWPNQSEDLSVFYPGTLLETGHDILFFWVARMVMLGLKLTGKLPFK
Sbjct: 523 DTWFSSGLFPFSILGWPNQSEDLSVFYPGTLLETGHDILFFWVARMVMLGLKLTGKLPFK 582
Query: 182 EVYLHAIVRDAHGRKMSKSLGNVIDPLDVIHGVSLQGLHNQLVNSNLDPSEMEKAKEGQK 361
EVYLHAIVRDAHGRKMSKSLGNVIDPLDVIHGV+LQGLH+QL+NSNLDPSE+EKAKEGQK
Sbjct: 583 EVYLHAIVRDAHGRKMSKSLGNVIDPLDVIHGVTLQGLHDQLLNSNLDPSEVEKAKEGQK 642
Query: 362 ADFPAGIPECGTDALRFGLCAYTSQGRDINLDVNRILGYRHFCNKLWNATKFALRGLGKG 541
ADFP GIPECGTDALRFGLCAYTSQGRDINLDVNRILGYRHFCNKLWNATKFALRGLGKG
Sbjct: 643 ADFPTGIPECGTDALRFGLCAYTSQGRDINLDVNRILGYRHFCNKLWNATKFALRGLGKG 702
Query: 542 FVPSATSEPGGRESLADRWIRSRLTEAVRLSNQGFQAYDFPAVTTAQYSFWLYELCDVYL 721
FVPS TSEPGGRESL DRWIRSRLTEAVRLSNQGFQAYDFPAVTTAQYSFWLYELCDVYL
Sbjct: 703 FVPSPTSEPGGRESLVDRWIRSRLTEAVRLSNQGFQAYDFPAVTTAQYSFWLYELCDVYL 762
Query: 722 ECLKPVLNGVDQVAAESARQTLYTCLDVGLRLLSPFMPFVTEELFQRLPRRTPQAPPSLC 901
ECLKPVLNGVDQVAAE ARQTLYTCLDVGLRLLSPFMPFVTEELFQRLPRRTPQAPPSLC
Sbjct: 763 ECLKPVLNGVDQVAAECARQTLYTCLDVGLRLLSPFMPFVTEELFQRLPRRTPQAPPSLC 822
Query: 902 VTSYPEPSECSWKDPEAEAAFELALSITRAVRSLRADYNLTRIRPDCFLEVADEATGALA 1081
VT+YPEPSECSWKDPEAEAAFELALSITRAVRSLRADYNLTRIRPDCFLEVADEATGALA
Sbjct: 823 VTAYPEPSECSWKDPEAEAAFELALSITRAVRSLRADYNLTRIRPDCFLEVADEATGALA 882
Query: 1082 SAVSGYVQTLASAGIVAVLALGASAPQGCAVALASDRCSVHLQLQGLVDPARELGKLQAK 1261
SAVSGYVQTLASAGIVAVLALGASAPQGCAVALASDRCSVHLQLQGLVDPARELGKLQ K
Sbjct: 883 SAVSGYVQTLASAGIVAVLALGASAPQGCAVALASDRCSVHLQLQGLVDPARELGKLQTK 942
Query: 1262 XXXXXXXXXXXXXXXXXSSYSVQVPLKV 1345
S Y+V+VPLKV
Sbjct: 943 RDEAQRQAQRLRERRAASGYTVKVPLKV 970
>ref|XP_581858.2| PREDICTED: valyl-tRNA synthetase-like [Bos taurus].
Length = 1252
Score = 843 bits (2179), Expect = 0.0
Identities = 418/448 (93%), Positives = 425/448 (94%)
Frame = +2
Query: 2 DTWFSSGLFPFSILGWPNQSEDLSVFYPGTLLETGHDILFFWVARMVMLGLKLTGKLPFK 181
DTWFSSGLFPFSILGWPNQSEDLSVFYPGTLLETGHDILFFWVARMVMLGLKLTGKLPFK
Sbjct: 776 DTWFSSGLFPFSILGWPNQSEDLSVFYPGTLLETGHDILFFWVARMVMLGLKLTGKLPFK 835
Query: 182 EVYLHAIVRDAHGRKMSKSLGNVIDPLDVIHGVSLQGLHNQLVNSNLDPSEMEKAKEGQK 361
EVYLHAIVRDAHGRKMSKSLGNVIDPLDVIHGV+LQGLH+QL+NSNLDPSE+EKAKEGQK
Sbjct: 836 EVYLHAIVRDAHGRKMSKSLGNVIDPLDVIHGVTLQGLHDQLLNSNLDPSEVEKAKEGQK 895
Query: 362 ADFPAGIPECGTDALRFGLCAYTSQGRDINLDVNRILGYRHFCNKLWNATKFALRGLGKG 541
ADFP GIPECGTDALRFGLCAYTSQGRDINLDVNRILGYRHFCNKLWNATKFALRGLGKG
Sbjct: 896 ADFPTGIPECGTDALRFGLCAYTSQGRDINLDVNRILGYRHFCNKLWNATKFALRGLGKG 955
Query: 542 FVPSATSEPGGRESLADRWIRSRLTEAVRLSNQGFQAYDFPAVTTAQYSFWLYELCDVYL 721
FVPS TSEPGGRESL DRWIRSRLTEAVRLSNQGFQAYDFPAVTTAQYSFWLYELCDVYL
Sbjct: 956 FVPSPTSEPGGRESLVDRWIRSRLTEAVRLSNQGFQAYDFPAVTTAQYSFWLYELCDVYL 1015
Query: 722 ECLKPVLNGVDQVAAESARQTLYTCLDVGLRLLSPFMPFVTEELFQRLPRRTPQAPPSLC 901
ECLKPVLNGVDQVAAE ARQTLYTCLDVGLRLLSPFMPFVTEELFQRLPRRTPQAPPSLC
Sbjct: 1016 ECLKPVLNGVDQVAAECARQTLYTCLDVGLRLLSPFMPFVTEELFQRLPRRTPQAPPSLC 1075
Query: 902 VTSYPEPSECSWKDPEAEAAFELALSITRAVRSLRADYNLTRIRPDCFLEVADEATGALA 1081
VT+YPEPSECSWKDPEAEAAFELALSITRAVRSLRADYNLTRIRPDCFLEVADEATGALA
Sbjct: 1076 VTAYPEPSECSWKDPEAEAAFELALSITRAVRSLRADYNLTRIRPDCFLEVADEATGALA 1135
Query: 1082 SAVSGYVQTLASAGIVAVLALGASAPQGCAVALASDRCSVHLQLQGLVDPARELGKLQAK 1261
SAVSGYVQTLASAGIVAVLALGASAPQGCAVALASDRCSVHLQLQGLVDPARELGKLQ K
Sbjct: 1136 SAVSGYVQTLASAGIVAVLALGASAPQGCAVALASDRCSVHLQLQGLVDPARELGKLQTK 1195
Query: 1262 XXXXXXXXXXXXXXXXXSSYSVQVPLKV 1345
S Y+V+VPLKV
Sbjct: 1196 RDEAQRQAQRLRERRAASGYTVKVPLKV 1223
>ref|NP_001193724.1| isoleucyl-tRNA synthetase, mitochondrial [Bos taurus].
Length = 1012
Score = 104 bits (259), Expect = 2e-22
Identities = 91/329 (27%), Positives = 139/329 (42%), Gaps = 2/329 (0%)
Frame = +2
Query: 2 DTWFSSGLFPFSILGWPNQSEDLSVFYPGTLLETGHDILFFWVARMVMLGLKLTGKLPFK 181
D WF SG ++L +Q DL + G D L W ++ + K PFK
Sbjct: 598 DIWFDSGTSWSNVLPGTDQRADLYL--------EGKDQLGGWFQSSLLTSVAARNKSPFK 649
Query: 182 EVYLHAIVRDAHGRKMSKSLGNVIDPLDVIHGVSLQGLHNQLVNSNLDPSEMEKAKEGQK 361
V +H G KMSKSLGN+IDP VI+G + +KE
Sbjct: 650 TVVVHGFTLGEKGEKMSKSLGNIIDPDVVING------------------GQDHSKE--- 688
Query: 362 ADFPAGIPECGTDALRFGLCAYTSQGRDINLDVNRILGYRHFCNKLWNATKFALRGLGKG 541
P G D LR+ + A ++ ++ + + + R +KL N +F L + G
Sbjct: 689 -------PPYGADVLRWWV-AESNVFTEVTISPSLLNAARDDISKLRNTLRFLLGNVA-G 739
Query: 542 FVPSATSEPGGRESLADRWIRSRLTEAVRLSNQGFQAYDFPAVTTAQYSFWLYELCDVYL 721
F P S P + D+++ L + N ++ YDF V +F+ EL + Y
Sbjct: 740 FNPETDSIPVNSMYVIDQYMLHLLQDLANKINDSYKQYDFGKVVRLLQAFYTRELSNFYF 799
Query: 722 ECLKPVL--NGVDQVAAESARQTLYTCLDVGLRLLSPFMPFVTEELFQRLPRRTPQAPPS 895
+K L D S + L LDV +R +P +P + EE+FQ +P + P S
Sbjct: 800 SIIKDRLYCENADDPKRRSCQTALAEILDVMVRSFAPILPHLAEEVFQHIP--YIKEPKS 857
Query: 896 LCVTSYPEPSECSWKDPEAEAAFELALSI 982
+ T + + S WK P E A E A ++
Sbjct: 858 VFRTGWIKTSSI-WKKPGLEEAIESACAM 885
>ref|NP_001094539.1| isoleucyl-tRNA synthetase, cytoplasmic [Bos taurus].
Length = 1262
Score = 74.7 bits (182), Expect = 2e-13
Identities = 77/292 (26%), Positives = 124/292 (42%), Gaps = 4/292 (1%)
Frame = +2
Query: 2 DTWFSSGLFPFSILGWPNQSE-DLSVFYPGTLLETGHDILFFWVARMVMLGLKLTGKLPF 178
D WF SG P++ + +P +++ + +P + G D W +++L L G+ PF
Sbjct: 525 DCWFESGSMPYAQIHYPFENKREFEDAFPADFIAEGIDQTRGWFYTLLVLATSLFGRPPF 584
Query: 179 KEVYLHAIVRDAHGRKMSKSLGNVIDPLDVIHGVSLQGLHNQLVNSNLDPSEMEKAKEGQ 358
K V ++ +V + G+KMSK N DPL VI L L+NS + +E + KE
Sbjct: 585 KNVIVNGLVLASDGQKMSKRKKNYPDPLSVIDKYGADALRLYLINSPVVRAENLRFKE-- 642
Query: 359 KADFPAGIPECGTDALRFGLCAYTSQGRDINLDVNRILGYRHFCNKLWNATKFALRGLGK 538
E D L+ L + + YR F + LR +
Sbjct: 643 ---------EGVRDVLKDVLLPWYN-------------AYRFFIQNV-------LRLQKE 673
Query: 539 GFVPSATSEPGGRES--LADRWIRSRLTEAVRLSNQGFQAYDFPAVTTAQYSFWLYELCD 712
V +E +ES + DRW+ S + V AY V F + L +
Sbjct: 674 EEVEFLYNENMVKESTNITDRWVLSFMQSLVGFFETEMAAYRLYTVVPRLVKF-VDILTN 732
Query: 713 VYLECLKPVLNGVDQVA-AESARQTLYTCLDVGLRLLSPFMPFVTEELFQRL 865
Y+ + L G + V A +TL++ L RL++P+ PF+TE ++Q L
Sbjct: 733 WYVRMNRRRLKGENGVEDCVKALETLFSVLLSLCRLMAPYTPFLTELMYQNL 784
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 46,175,072
Number of extensions: 1302340
Number of successful extensions: 5909
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 5896
Number of HSP's successfully gapped: 4
Length of query: 448
Length of database: 17,681,374
Length adjustment: 105
Effective length of query: 343
Effective length of database: 14,207,134
Effective search space: 4873046962
Effective search space used: 4873046962
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-004169
(1345 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_860172.1| PREDICTED: similar to Valyl-tRNA synthetase 2 (... 765 0.0
Alignment gi|XP_860130.1| PREDICTED: similar to Valyl-tRNA synthetase 2 (... 765 0.0
Alignment gi|XP_860096.1| PREDICTED: similar to Valyl-tRNA synthetase 2 (... 765 0.0
Alignment gi|XP_538837.2| PREDICTED: similar to Valyl-tRNA synthetase 2 (... 765 0.0
Alignment gi|XP_532063.2| PREDICTED: similar to valyl-tRNA synthetase 2-l... 395 e-110
Alignment gi|XP_536121.2| PREDICTED: similar to mitochondrial isoleucine ... 96 6e-20
Alignment gi|XP_541332.2| PREDICTED: similar to Isoleucyl-tRNA synthetase... 79 1e-14
>ref|XP_860172.1| PREDICTED: similar to Valyl-tRNA synthetase 2 (Valine--tRNA ligase 2)
(ValRS 2) (G7a protein) isoform 4 [Canis familiaris].
Length = 1244
Score = 765 bits (1975), Expect = 0.0
Identities = 385/448 (85%), Positives = 395/448 (88%)
Frame = +2
Query: 2 DTWFSSGLFPFSILGWPNQSEDLSVFYPGTLLETGHDILFFWVARMVMLGLKLTGKLPFK 181
DTWFSSGLFPFSI GWPNQSEDLSVFYPGTLLETGHDILFFWVARMVMLGLKLTGKLPF+
Sbjct: 776 DTWFSSGLFPFSIFGWPNQSEDLSVFYPGTLLETGHDILFFWVARMVMLGLKLTGKLPFR 835
Query: 182 EVYLHAIVRDAHGRKMSKSLGNVIDPLDVIHGVSLQGLHNQLVNSNLDPSEMEKAKEGQK 361
EVYLHAIVRDAHGRKMSKSLGNVIDPLDVIHGVSLQGLH+QL+NSNLDPSE+EKAK+GQK
Sbjct: 836 EVYLHAIVRDAHGRKMSKSLGNVIDPLDVIHGVSLQGLHDQLLNSNLDPSEVEKAKDGQK 895
Query: 362 ADFPAGIPECGTDALRFGLCAYTSQGRDINLDVNRILGYRHFCNKLWNATKFALRGLGKG 541
ADFPAGIPECGTDALRFGLCAYTSQGRDINLDVNRILGYRHFCNKLWNATKFALRGLGKG
Sbjct: 896 ADFPAGIPECGTDALRFGLCAYTSQGRDINLDVNRILGYRHFCNKLWNATKFALRGLGKG 955
Query: 542 FVPSATSEPGGRESLADRWIRSRLTEAVRLSNQGFQAYDFPAVTTAQYSFWLYELCDVYL 721
FVPSATSEPGG ESL DRWIRSRLTEAVRLSNQGFQAYDFPAVTTAQYSFWLYELCDVYL
Sbjct: 956 FVPSATSEPGGHESLVDRWIRSRLTEAVRLSNQGFQAYDFPAVTTAQYSFWLYELCDVYL 1015
Query: 722 ECLKPVLNGVDQVAAESARQTLYTCLDVGLRLLSPFMPFVTEELFQRLPRRTPQAPPSLC 901
ECLKPVLNG+D V AE ARQTLYTCLDVGLRLLSPFMPFVTEELFQRLPRRT QAPPSLC
Sbjct: 1016 ECLKPVLNGMDHVVAECARQTLYTCLDVGLRLLSPFMPFVTEELFQRLPRRTLQAPPSLC 1075
Query: 902 VTSYPEPSECSWKDPEAEAAFELALSITRAVRSLRADYNLTRIRPDCFLEVADEATGALA 1081
VT YPEPSE + VRSLRA YNLTRIRP CFLEVADEATG LA
Sbjct: 1076 VTPYPEPSEV--------RVYNFLSYFVLXVRSLRAFYNLTRIRPVCFLEVADEATGILA 1127
Query: 1082 SAVSGYVQTLASAGIVAVLALGASAPQGCAVALASDRCSVHLQLQGLVDPARELGKLQAK 1261
SAVS YVQ LASAG+VAVLALGA APQGCAVALASDRCSVHLQLQGLVDPARELGKLQAK
Sbjct: 1128 SAVSAYVQALASAGVVAVLALGAPAPQGCAVALASDRCSVHLQLQGLVDPARELGKLQAK 1187
Query: 1262 XXXXXXXXXXXXXXXXXSSYSVQVPLKV 1345
S Y V+VPL+V
Sbjct: 1188 RSEAQRQAQRLRERRAASGYPVKVPLEV 1215
>ref|XP_860130.1| PREDICTED: similar to Valyl-tRNA synthetase 2 (Valine--tRNA ligase 2)
(ValRS 2) (G7a protein) isoform 3 [Canis familiaris].
Length = 1257
Score = 765 bits (1975), Expect = 0.0
Identities = 385/448 (85%), Positives = 395/448 (88%)
Frame = +2
Query: 2 DTWFSSGLFPFSILGWPNQSEDLSVFYPGTLLETGHDILFFWVARMVMLGLKLTGKLPFK 181
DTWFSSGLFPFSI GWPNQSEDLSVFYPGTLLETGHDILFFWVARMVMLGLKLTGKLPF+
Sbjct: 789 DTWFSSGLFPFSIFGWPNQSEDLSVFYPGTLLETGHDILFFWVARMVMLGLKLTGKLPFR 848
Query: 182 EVYLHAIVRDAHGRKMSKSLGNVIDPLDVIHGVSLQGLHNQLVNSNLDPSEMEKAKEGQK 361
EVYLHAIVRDAHGRKMSKSLGNVIDPLDVIHGVSLQGLH+QL+NSNLDPSE+EKAK+GQK
Sbjct: 849 EVYLHAIVRDAHGRKMSKSLGNVIDPLDVIHGVSLQGLHDQLLNSNLDPSEVEKAKDGQK 908
Query: 362 ADFPAGIPECGTDALRFGLCAYTSQGRDINLDVNRILGYRHFCNKLWNATKFALRGLGKG 541
ADFPAGIPECGTDALRFGLCAYTSQGRDINLDVNRILGYRHFCNKLWNATKFALRGLGKG
Sbjct: 909 ADFPAGIPECGTDALRFGLCAYTSQGRDINLDVNRILGYRHFCNKLWNATKFALRGLGKG 968
Query: 542 FVPSATSEPGGRESLADRWIRSRLTEAVRLSNQGFQAYDFPAVTTAQYSFWLYELCDVYL 721
FVPSATSEPGG ESL DRWIRSRLTEAVRLSNQGFQAYDFPAVTTAQYSFWLYELCDVYL
Sbjct: 969 FVPSATSEPGGHESLVDRWIRSRLTEAVRLSNQGFQAYDFPAVTTAQYSFWLYELCDVYL 1028
Query: 722 ECLKPVLNGVDQVAAESARQTLYTCLDVGLRLLSPFMPFVTEELFQRLPRRTPQAPPSLC 901
ECLKPVLNG+D V AE ARQTLYTCLDVGLRLLSPFMPFVTEELFQRLPRRT QAPPSLC
Sbjct: 1029 ECLKPVLNGMDHVVAECARQTLYTCLDVGLRLLSPFMPFVTEELFQRLPRRTLQAPPSLC 1088
Query: 902 VTSYPEPSECSWKDPEAEAAFELALSITRAVRSLRADYNLTRIRPDCFLEVADEATGALA 1081
VT YPEPSE + VRSLRA YNLTRIRP CFLEVADEATG LA
Sbjct: 1089 VTPYPEPSEV--------RVYNFLSYFVLXVRSLRAFYNLTRIRPVCFLEVADEATGILA 1140
Query: 1082 SAVSGYVQTLASAGIVAVLALGASAPQGCAVALASDRCSVHLQLQGLVDPARELGKLQAK 1261
SAVS YVQ LASAG+VAVLALGA APQGCAVALASDRCSVHLQLQGLVDPARELGKLQAK
Sbjct: 1141 SAVSAYVQALASAGVVAVLALGAPAPQGCAVALASDRCSVHLQLQGLVDPARELGKLQAK 1200
Query: 1262 XXXXXXXXXXXXXXXXXSSYSVQVPLKV 1345
S Y V+VPL+V
Sbjct: 1201 RSEAQRQAQRLRERRAASGYPVKVPLEV 1228
>ref|XP_860096.1| PREDICTED: similar to Valyl-tRNA synthetase 2 (Valine--tRNA ligase 2)
(ValRS 2) isoform 2 [Canis familiaris].
Length = 844
Score = 765 bits (1975), Expect = 0.0
Identities = 385/448 (85%), Positives = 395/448 (88%)
Frame = +2
Query: 2 DTWFSSGLFPFSILGWPNQSEDLSVFYPGTLLETGHDILFFWVARMVMLGLKLTGKLPFK 181
DTWFSSGLFPFSI GWPNQSEDLSVFYPGTLLETGHDILFFWVARMVMLGLKLTGKLPF+
Sbjct: 376 DTWFSSGLFPFSIFGWPNQSEDLSVFYPGTLLETGHDILFFWVARMVMLGLKLTGKLPFR 435
Query: 182 EVYLHAIVRDAHGRKMSKSLGNVIDPLDVIHGVSLQGLHNQLVNSNLDPSEMEKAKEGQK 361
EVYLHAIVRDAHGRKMSKSLGNVIDPLDVIHGVSLQGLH+QL+NSNLDPSE+EKAK+GQK
Sbjct: 436 EVYLHAIVRDAHGRKMSKSLGNVIDPLDVIHGVSLQGLHDQLLNSNLDPSEVEKAKDGQK 495
Query: 362 ADFPAGIPECGTDALRFGLCAYTSQGRDINLDVNRILGYRHFCNKLWNATKFALRGLGKG 541
ADFPAGIPECGTDALRFGLCAYTSQGRDINLDVNRILGYRHFCNKLWNATKFALRGLGKG
Sbjct: 496 ADFPAGIPECGTDALRFGLCAYTSQGRDINLDVNRILGYRHFCNKLWNATKFALRGLGKG 555
Query: 542 FVPSATSEPGGRESLADRWIRSRLTEAVRLSNQGFQAYDFPAVTTAQYSFWLYELCDVYL 721
FVPSATSEPGG ESL DRWIRSRLTEAVRLSNQGFQAYDFPAVTTAQYSFWLYELCDVYL
Sbjct: 556 FVPSATSEPGGHESLVDRWIRSRLTEAVRLSNQGFQAYDFPAVTTAQYSFWLYELCDVYL 615
Query: 722 ECLKPVLNGVDQVAAESARQTLYTCLDVGLRLLSPFMPFVTEELFQRLPRRTPQAPPSLC 901
ECLKPVLNG+D V AE ARQTLYTCLDVGLRLLSPFMPFVTEELFQRLPRRT QAPPSLC
Sbjct: 616 ECLKPVLNGMDHVVAECARQTLYTCLDVGLRLLSPFMPFVTEELFQRLPRRTLQAPPSLC 675
Query: 902 VTSYPEPSECSWKDPEAEAAFELALSITRAVRSLRADYNLTRIRPDCFLEVADEATGALA 1081
VT YPEPSE + VRSLRA YNLTRIRP CFLEVADEATG LA
Sbjct: 676 VTPYPEPSEV--------RVYNFLSYFVLXVRSLRAFYNLTRIRPVCFLEVADEATGILA 727
Query: 1082 SAVSGYVQTLASAGIVAVLALGASAPQGCAVALASDRCSVHLQLQGLVDPARELGKLQAK 1261
SAVS YVQ LASAG+VAVLALGA APQGCAVALASDRCSVHLQLQGLVDPARELGKLQAK
Sbjct: 728 SAVSAYVQALASAGVVAVLALGAPAPQGCAVALASDRCSVHLQLQGLVDPARELGKLQAK 787
Query: 1262 XXXXXXXXXXXXXXXXXSSYSVQVPLKV 1345
S Y V+VPL+V
Sbjct: 788 RSEAQRQAQRLRERRAASGYPVKVPLEV 815
>ref|XP_538837.2| PREDICTED: similar to Valyl-tRNA synthetase 2 (Valine--tRNA ligase 2)
(ValRS 2) (G7a protein) isoform 1 [Canis familiaris].
Length = 1256
Score = 765 bits (1975), Expect = 0.0
Identities = 385/448 (85%), Positives = 395/448 (88%)
Frame = +2
Query: 2 DTWFSSGLFPFSILGWPNQSEDLSVFYPGTLLETGHDILFFWVARMVMLGLKLTGKLPFK 181
DTWFSSGLFPFSI GWPNQSEDLSVFYPGTLLETGHDILFFWVARMVMLGLKLTGKLPF+
Sbjct: 788 DTWFSSGLFPFSIFGWPNQSEDLSVFYPGTLLETGHDILFFWVARMVMLGLKLTGKLPFR 847
Query: 182 EVYLHAIVRDAHGRKMSKSLGNVIDPLDVIHGVSLQGLHNQLVNSNLDPSEMEKAKEGQK 361
EVYLHAIVRDAHGRKMSKSLGNVIDPLDVIHGVSLQGLH+QL+NSNLDPSE+EKAK+GQK
Sbjct: 848 EVYLHAIVRDAHGRKMSKSLGNVIDPLDVIHGVSLQGLHDQLLNSNLDPSEVEKAKDGQK 907
Query: 362 ADFPAGIPECGTDALRFGLCAYTSQGRDINLDVNRILGYRHFCNKLWNATKFALRGLGKG 541
ADFPAGIPECGTDALRFGLCAYTSQGRDINLDVNRILGYRHFCNKLWNATKFALRGLGKG
Sbjct: 908 ADFPAGIPECGTDALRFGLCAYTSQGRDINLDVNRILGYRHFCNKLWNATKFALRGLGKG 967
Query: 542 FVPSATSEPGGRESLADRWIRSRLTEAVRLSNQGFQAYDFPAVTTAQYSFWLYELCDVYL 721
FVPSATSEPGG ESL DRWIRSRLTEAVRLSNQGFQAYDFPAVTTAQYSFWLYELCDVYL
Sbjct: 968 FVPSATSEPGGHESLVDRWIRSRLTEAVRLSNQGFQAYDFPAVTTAQYSFWLYELCDVYL 1027
Query: 722 ECLKPVLNGVDQVAAESARQTLYTCLDVGLRLLSPFMPFVTEELFQRLPRRTPQAPPSLC 901
ECLKPVLNG+D V AE ARQTLYTCLDVGLRLLSPFMPFVTEELFQRLPRRT QAPPSLC
Sbjct: 1028 ECLKPVLNGMDHVVAECARQTLYTCLDVGLRLLSPFMPFVTEELFQRLPRRTLQAPPSLC 1087
Query: 902 VTSYPEPSECSWKDPEAEAAFELALSITRAVRSLRADYNLTRIRPDCFLEVADEATGALA 1081
VT YPEPSE + VRSLRA YNLTRIRP CFLEVADEATG LA
Sbjct: 1088 VTPYPEPSEV--------RVYNFLSYFVLXVRSLRAFYNLTRIRPVCFLEVADEATGILA 1139
Query: 1082 SAVSGYVQTLASAGIVAVLALGASAPQGCAVALASDRCSVHLQLQGLVDPARELGKLQAK 1261
SAVS YVQ LASAG+VAVLALGA APQGCAVALASDRCSVHLQLQGLVDPARELGKLQAK
Sbjct: 1140 SAVSAYVQALASAGVVAVLALGAPAPQGCAVALASDRCSVHLQLQGLVDPARELGKLQAK 1199
Query: 1262 XXXXXXXXXXXXXXXXXSSYSVQVPLKV 1345
S Y V+VPL+V
Sbjct: 1200 RSEAQRQAQRLRERRAASGYPVKVPLEV 1227
>ref|XP_532063.2| PREDICTED: similar to valyl-tRNA synthetase 2-like [Canis
familiaris].
Length = 1077
Score = 395 bits (1016), Expect = e-110
Identities = 206/422 (48%), Positives = 266/422 (63%), Gaps = 2/422 (0%)
Frame = +2
Query: 2 DTWFSSGLFPFSILGWPNQSEDLSVFYPGTLLETGHDILFFWVARMVMLGLKLTGKLPFK 181
DTWFSS LFPF+ LGWP ++ DL+ FYP +LLETG D+L FWV RMVMLG +LTG+LPF
Sbjct: 600 DTWFSSALFPFAALGWPQETPDLARFYPLSLLETGSDLLLFWVGRMVMLGTQLTGQLPFT 659
Query: 182 EVYLHAIVRDAHGRKMSKSLGNVIDPLDVIHGVSLQGLHNQLVNSNLDPSEMEKAKEGQK 361
+V LH++VRD GRKMSKSLGNV+DP D+I GV LQ L +L + NLD +E+ A Q+
Sbjct: 660 KVLLHSMVRDGQGRKMSKSLGNVLDPRDIISGVELQVLQEKLKDGNLDSTELAIAAAAQR 719
Query: 362 ADFPAGIPECGTDALRFGLCAYTSQGRDINLDVNRILGYRHFCNKLWNATKFALRGLGKG 541
DFP GIPECGTDALRF LC++ + G D++L V+ +L RHFCNK+WNA +F L LG+G
Sbjct: 720 KDFPHGIPECGTDALRFALCSHRALGGDVHLSVSEVLSSRHFCNKIWNALRFILNALGEG 779
Query: 542 FVPSATSEPGGRESLADRWIRSRLTEAVRLSNQGFQAYDFPAVTTAQYSFWLYELCDVYL 721
FVP E S D WI SRL + + F A + P +T A + FWL+ LCDVYL
Sbjct: 780 FVPQPAEEL-SPSSPTDAWILSRLAHTAQECERAFLARELPLITHALHHFWLHSLCDVYL 838
Query: 722 ECLKPVLNGVDQVAAESARQTLYTCLDVGLRLLSPFMPFVTEELFQRLPRRT-PQAPPSL 898
E +KPVL+ + Q L++C DVGLRLL+P MPF+ EEL+QRLP R + PS+
Sbjct: 839 EAVKPVLS--HSPHPQGPPQVLFSCADVGLRLLAPLMPFLAEELWQRLPPRPGSNSAPSI 896
Query: 899 CVTSYPEPSECS-WKDPEAEAAFELALSITRAVRSLRADYNLTRIRPDCFLEVADEATGA 1075
V YP W+ P E F + +R+LRA Y LT+ RP L+ ++ +
Sbjct: 897 SVAPYPTTHSLEHWRQPALEQHFSQVQEAVQVLRALRATYQLTKARPRVLLQSSEPGELS 956
Query: 1076 LASAVSGYVQTLASAGIVAVLALGASAPQGCAVALASDRCSVHLQLQGLVDPARELGKLQ 1255
L + TL G V +L G +AP G A A SD V+++LQGLVDP L L
Sbjct: 957 LFKPFLEPLATLGHCGAVGLLPPGVAAPSGWAQAPLSDTIQVYMELQGLVDPQAHLALLA 1016
Query: 1256 AK 1261
A+
Sbjct: 1017 AR 1018
>ref|XP_536121.2| PREDICTED: similar to mitochondrial isoleucine tRNA synthetase [Canis
familiaris].
Length = 964
Score = 96.3 bits (238), Expect = 6e-20
Identities = 90/324 (27%), Positives = 132/324 (40%), Gaps = 2/324 (0%)
Frame = +2
Query: 2 DTWFSSGLFPFSILGWPNQSEDLSVFYPGTLLETGHDILFFWVARMVMLGLKLTGKLPFK 181
D WF SG +L +Q DL + G D L W ++ + K PFK
Sbjct: 550 DIWFDSGTSWSYVLPGTDQRADLYL--------EGKDQLGGWFQSSLLTSVATRKKAPFK 601
Query: 182 EVYLHAIVRDAHGRKMSKSLGNVIDPLDVIHGVSLQGLHNQLVNSNLDPSEMEKAKEGQK 361
V +H G KMSKSLGNVIDP VI+G + Q
Sbjct: 602 TVVVHGFTLGEKGEKMSKSLGNVIDPDVVING-----------------------GQDQS 638
Query: 362 ADFPAGIPECGTDALRFGLCAYTSQGRDINLDVNRILGYRHFCNKLWNATKFALRGLGKG 541
A+ P G D LR+ + A ++ ++ + + + R +KL N +F L G G
Sbjct: 639 AE-----PPYGADVLRWWV-AESNVFTEVTISPSVLNAARDDISKLRNTLRFLL-GNVAG 691
Query: 542 FVPSATSEPGGRESLADRWIRSRLTEAVRLSNQGFQAYDFPAVTTAQYSFWLYELCDVYL 721
F P S P + D+++ L + ++ YDF V +F+ EL + Y
Sbjct: 692 FNPETDSIPVNNMHVIDQYMLHLLQDLANKITDSYKQYDFGKVVRLLRAFYTRELSNFYF 751
Query: 722 ECLKPVL--NGVDQVAAESARQTLYTCLDVGLRLLSPFMPFVTEELFQRLPRRTPQAPPS 895
+K L S + L LDV +R +P +P + EE+FQ +P + P S
Sbjct: 752 SIIKDRLYCEKAGDPKRRSCQTALAEILDVMVRSFAPILPHLAEEVFQHVP--YAKEPKS 809
Query: 896 LCVTSYPEPSECSWKDPEAEAAFE 967
+ T + S WK P E A E
Sbjct: 810 VFRTGWIRTSSI-WKKPGLEEAIE 832
>ref|XP_541332.2| PREDICTED: similar to Isoleucyl-tRNA synthetase, cytoplasmic
(Isoleucine--tRNA ligase) (IleRS) (IRS) [Canis
familiaris].
Length = 2763
Score = 78.6 bits (192), Expect = 1e-14
Identities = 77/292 (26%), Positives = 131/292 (44%), Gaps = 4/292 (1%)
Frame = +2
Query: 2 DTWFSSGLFPFSILGWPNQSE-DLSVFYPGTLLETGHDILFFWVARMVMLGLKLTGKLPF 178
D WF SG P++ + +P +++ + +P + G D W +++L L G+ PF
Sbjct: 1942 DCWFESGSMPYAQVHYPFENKREFDDAFPADFIAEGIDQTRGWFYTLLVLATALFGQPPF 2001
Query: 179 KEVYLHAIVRDAHGRKMSKSLGNVIDPLDVIHGVSLQGLHNQLVNSNLDPSEMEKAKEGQ 358
+ V ++ +V + G+KMSK N DPL +IH L L+NS + +E + KE
Sbjct: 2002 RNVIVNGLVLASDGQKMSKRKKNYPDPLSIIHKYGADALRLYLINSPVVRAENLRFKE-- 2059
Query: 359 KADFPAGIPECGTDALRFGLCAYTSQGRDINLDVNRILGYRHFCNKLWNATKFALRGLGK 538
E D L+ L + + R +V R+ + + N +A +
Sbjct: 2060 ---------EGVRDVLKDVLLPWYNAYRFFIQNVLRL--QKVWVNVQIDAIIVTFQEEEM 2108
Query: 539 GFVPSATSEPGGRES--LADRWIRSRLTEAVRLSNQGFQAYDFPAVTTAQYSFWLYELCD 712
F+ +E RES + DRW+ S + V AY V F + L +
Sbjct: 2109 EFI---YNENTARESANVTDRWVLSCMQSLVGFFETEMAAYRLYTVVPRLVKF-VDVLTN 2164
Query: 713 VYLECLKPVLNGVDQVA-AESARQTLYTCLDVGLRLLSPFMPFVTEELFQRL 865
Y+ + L G + V +A +TL++ L RL++P+ PF+TE ++Q L
Sbjct: 2165 WYVRMNRRRLKGENGVEDCVTALETLFSVLLSLCRLMAPYTPFLTELMYQNL 2216
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 48,123,747
Number of extensions: 1336270
Number of successful extensions: 5982
Number of sequences better than 1.0e-05: 7
Number of HSP's gapped: 5968
Number of HSP's successfully gapped: 7
Length of query: 448
Length of database: 18,874,504
Length adjustment: 106
Effective length of query: 342
Effective length of database: 15,340,888
Effective search space: 5246583696
Effective search space used: 5246583696
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-004169
(1345 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_006286.1| valyl-tRNA synthetase [Homo sapiens]. 825 0.0
Alignment gi|NP_001161206.1| valyl-tRNA synthetase, mitochondrial isoform... 398 e-111
Alignment gi|NP_001161205.1| valyl-tRNA synthetase, mitochondrial isoform... 398 e-111
Alignment gi|NP_065175.4| valyl-tRNA synthetase, mitochondrial isoform 2 ... 398 e-111
Alignment gi|NP_060530.3| isoleucyl-tRNA synthetase, mitochondrial precur... 89 9e-18
Alignment gi|NP_038203.2| isoleucyl-tRNA synthetase, cytoplasmic [Homo sa... 71 3e-12
Alignment gi|NP_002152.2| isoleucyl-tRNA synthetase, cytoplasmic [Homo sa... 71 3e-12
>ref|NP_006286.1| valyl-tRNA synthetase [Homo sapiens].
Length = 1264
Score = 825 bits (2130), Expect = 0.0
Identities = 407/448 (90%), Positives = 418/448 (93%)
Frame = +2
Query: 2 DTWFSSGLFPFSILGWPNQSEDLSVFYPGTLLETGHDILFFWVARMVMLGLKLTGKLPFK 181
DTWFSSGLFP SILGWPNQSEDLSVFYPGTLLETGHDILFFWVARMVMLGLKLTG+LPF+
Sbjct: 788 DTWFSSGLFPLSILGWPNQSEDLSVFYPGTLLETGHDILFFWVARMVMLGLKLTGRLPFR 847
Query: 182 EVYLHAIVRDAHGRKMSKSLGNVIDPLDVIHGVSLQGLHNQLVNSNLDPSEMEKAKEGQK 361
EVYLHAIVRDAHGRKMSKSLGNVIDPLDVI+G+SLQGLHNQL+NSNLDPSE+EKAKEGQK
Sbjct: 848 EVYLHAIVRDAHGRKMSKSLGNVIDPLDVIYGISLQGLHNQLLNSNLDPSEVEKAKEGQK 907
Query: 362 ADFPAGIPECGTDALRFGLCAYTSQGRDINLDVNRILGYRHFCNKLWNATKFALRGLGKG 541
ADFPAGIPECGTDALRFGLCAY SQGRDINLDVNRILGYRHFCNKLWNATKFALRGLGKG
Sbjct: 908 ADFPAGIPECGTDALRFGLCAYMSQGRDINLDVNRILGYRHFCNKLWNATKFALRGLGKG 967
Query: 542 FVPSATSEPGGRESLADRWIRSRLTEAVRLSNQGFQAYDFPAVTTAQYSFWLYELCDVYL 721
FVPS TS+PGG ESL DRWIRSRLTEAVRLSNQGFQAYDFPAVTTAQYSFWLYELCDVYL
Sbjct: 968 FVPSPTSQPGGHESLVDRWIRSRLTEAVRLSNQGFQAYDFPAVTTAQYSFWLYELCDVYL 1027
Query: 722 ECLKPVLNGVDQVAAESARQTLYTCLDVGLRLLSPFMPFVTEELFQRLPRRTPQAPPSLC 901
ECLKPVLNGVDQVAAE ARQTLYTCLDVGLRLLSPFMPFVTEELFQRLPRR PQAPPSLC
Sbjct: 1028 ECLKPVLNGVDQVAAECARQTLYTCLDVGLRLLSPFMPFVTEELFQRLPRRMPQAPPSLC 1087
Query: 902 VTSYPEPSECSWKDPEAEAAFELALSITRAVRSLRADYNLTRIRPDCFLEVADEATGALA 1081
VT YPEPSECSWKDPEAEAA ELALSITRAVRSLRADYNLTRIRPDCFLEVADEATGALA
Sbjct: 1088 VTPYPEPSECSWKDPEAEAALELALSITRAVRSLRADYNLTRIRPDCFLEVADEATGALA 1147
Query: 1082 SAVSGYVQTLASAGIVAVLALGASAPQGCAVALASDRCSVHLQLQGLVDPARELGKLQAK 1261
SAVSGYVQ LASAG+VAVLALGA APQGCAVALASDRCS+HLQLQGLVDPARELGKLQAK
Sbjct: 1148 SAVSGYVQALASAGVVAVLALGAPAPQGCAVALASDRCSIHLQLQGLVDPARELGKLQAK 1207
Query: 1262 XXXXXXXXXXXXXXXXXSSYSVQVPLKV 1345
S Y V+VPL+V
Sbjct: 1208 RVEAQRQAQRLRERRAASGYPVKVPLEV 1235
>ref|NP_001161206.1| valyl-tRNA synthetase, mitochondrial isoform 1 [Homo sapiens].
Length = 1093
Score = 398 bits (1023), Expect = e-111
Identities = 211/423 (49%), Positives = 269/423 (63%), Gaps = 3/423 (0%)
Frame = +2
Query: 2 DTWFSSGLFPFSILGWPNQSEDLSVFYPGTLLETGHDILFFWVARMVMLGLKLTGKLPFK 181
DTWFSS LFPFS LGWP ++ DL+ FYP +LLETG D+L FWV RMVMLG +LTG+LPF
Sbjct: 614 DTWFSSALFPFSALGWPQETPDLARFYPLSLLETGSDLLLFWVGRMVMLGTQLTGQLPFS 673
Query: 182 EVYLHAIVRDAHGRKMSKSLGNVIDPLDVIHGVSLQGLHNQLVNSNLDPSEMEKAKEGQK 361
+V LH +VRD GRKMSKSLGNV+DP D+I GV +Q L +L + NLDP+E+ QK
Sbjct: 674 KVLLHPMVRDRQGRKMSKSLGNVLDPRDIISGVEMQVLQEKLRSGNLDPAELAIVAAAQK 733
Query: 362 ADFPAGIPECGTDALRFGLCAYTSQGRDINLDVNRILGYRHFCNKLWNATKFALRGLGKG 541
DFP GIPECGTDALRF LC++ Q D++L V+ + RHFCNK+WNA +F L LG+
Sbjct: 734 KDFPHGIPECGTDALRFTLCSHGVQAGDLHLSVSEVQSCRHFCNKIWNALRFILNALGEK 793
Query: 542 FVPSATSEPGGRESLADRWIRSRLTEAVRLSNQGFQAYDFPAVTTAQYSFWLYELCDVYL 721
FVP E S D WI SRL A + +GF + VT A + FWL+ LCDVYL
Sbjct: 794 FVPQPAEEL-SPSSPMDAWILSRLALAAQECERGFLTRELSLVTHALHHFWLHNLCDVYL 852
Query: 722 ECLKPVLNGVDQVAAESARQTLYTCLDVGLRLLSPFMPFVTEELFQRLPRRTPQAPPSLC 901
E +KPVL + Q L++C D+GLRLL+P MPF+ EEL+QRLP R P PP+
Sbjct: 853 EAVKPVLWHSPRPLGPP--QVLFSCADLGLRLLAPLMPFLAEELWQRLPPR-PGCPPAPS 909
Query: 902 VTSYPEPSECS---WKDPEAEAAFELALSITRAVRSLRADYNLTRIRPDCFLEVADEATG 1072
++ P PS CS W+ PE E F + + +R+LRA Y LT+ RP L+ ++
Sbjct: 910 ISVAPYPSACSLEHWRQPELERRFSRVQEVVQVLRALRATYQLTKARPRVLLQSSEPGDQ 969
Query: 1073 ALASAVSGYVQTLASAGIVAVLALGASAPQGCAVALASDRCSVHLQLQGLVDPARELGKL 1252
L A + TL G V +L GA+AP G A A SD V+++LQGLVDP +L L
Sbjct: 970 GLFEAFLEPLGTLGYCGAVGLLPPGAAAPSGWAQAPLSDTAQVYMELQGLVDPQIQLPLL 1029
Query: 1253 QAK 1261
A+
Sbjct: 1030 AAR 1032
>ref|NP_001161205.1| valyl-tRNA synthetase, mitochondrial isoform 3 [Homo sapiens].
Length = 923
Score = 398 bits (1023), Expect = e-111
Identities = 211/423 (49%), Positives = 269/423 (63%), Gaps = 3/423 (0%)
Frame = +2
Query: 2 DTWFSSGLFPFSILGWPNQSEDLSVFYPGTLLETGHDILFFWVARMVMLGLKLTGKLPFK 181
DTWFSS LFPFS LGWP ++ DL+ FYP +LLETG D+L FWV RMVMLG +LTG+LPF
Sbjct: 444 DTWFSSALFPFSALGWPQETPDLARFYPLSLLETGSDLLLFWVGRMVMLGTQLTGQLPFS 503
Query: 182 EVYLHAIVRDAHGRKMSKSLGNVIDPLDVIHGVSLQGLHNQLVNSNLDPSEMEKAKEGQK 361
+V LH +VRD GRKMSKSLGNV+DP D+I GV +Q L +L + NLDP+E+ QK
Sbjct: 504 KVLLHPMVRDRQGRKMSKSLGNVLDPRDIISGVEMQVLQEKLRSGNLDPAELAIVAAAQK 563
Query: 362 ADFPAGIPECGTDALRFGLCAYTSQGRDINLDVNRILGYRHFCNKLWNATKFALRGLGKG 541
DFP GIPECGTDALRF LC++ Q D++L V+ + RHFCNK+WNA +F L LG+
Sbjct: 564 KDFPHGIPECGTDALRFTLCSHGVQAGDLHLSVSEVQSCRHFCNKIWNALRFILNALGEK 623
Query: 542 FVPSATSEPGGRESLADRWIRSRLTEAVRLSNQGFQAYDFPAVTTAQYSFWLYELCDVYL 721
FVP E S D WI SRL A + +GF + VT A + FWL+ LCDVYL
Sbjct: 624 FVPQPAEEL-SPSSPMDAWILSRLALAAQECERGFLTRELSLVTHALHHFWLHNLCDVYL 682
Query: 722 ECLKPVLNGVDQVAAESARQTLYTCLDVGLRLLSPFMPFVTEELFQRLPRRTPQAPPSLC 901
E +KPVL + Q L++C D+GLRLL+P MPF+ EEL+QRLP R P PP+
Sbjct: 683 EAVKPVLWHSPRPLGPP--QVLFSCADLGLRLLAPLMPFLAEELWQRLPPR-PGCPPAPS 739
Query: 902 VTSYPEPSECS---WKDPEAEAAFELALSITRAVRSLRADYNLTRIRPDCFLEVADEATG 1072
++ P PS CS W+ PE E F + + +R+LRA Y LT+ RP L+ ++
Sbjct: 740 ISVAPYPSACSLEHWRQPELERRFSRVQEVVQVLRALRATYQLTKARPRVLLQSSEPGDQ 799
Query: 1073 ALASAVSGYVQTLASAGIVAVLALGASAPQGCAVALASDRCSVHLQLQGLVDPARELGKL 1252
L A + TL G V +L GA+AP G A A SD V+++LQGLVDP +L L
Sbjct: 800 GLFEAFLEPLGTLGYCGAVGLLPPGAAAPSGWAQAPLSDTAQVYMELQGLVDPQIQLPLL 859
Query: 1253 QAK 1261
A+
Sbjct: 860 AAR 862
>ref|NP_065175.4| valyl-tRNA synthetase, mitochondrial isoform 2 precursor [Homo
sapiens].
Length = 1063
Score = 398 bits (1023), Expect = e-111
Identities = 211/423 (49%), Positives = 269/423 (63%), Gaps = 3/423 (0%)
Frame = +2
Query: 2 DTWFSSGLFPFSILGWPNQSEDLSVFYPGTLLETGHDILFFWVARMVMLGLKLTGKLPFK 181
DTWFSS LFPFS LGWP ++ DL+ FYP +LLETG D+L FWV RMVMLG +LTG+LPF
Sbjct: 584 DTWFSSALFPFSALGWPQETPDLARFYPLSLLETGSDLLLFWVGRMVMLGTQLTGQLPFS 643
Query: 182 EVYLHAIVRDAHGRKMSKSLGNVIDPLDVIHGVSLQGLHNQLVNSNLDPSEMEKAKEGQK 361
+V LH +VRD GRKMSKSLGNV+DP D+I GV +Q L +L + NLDP+E+ QK
Sbjct: 644 KVLLHPMVRDRQGRKMSKSLGNVLDPRDIISGVEMQVLQEKLRSGNLDPAELAIVAAAQK 703
Query: 362 ADFPAGIPECGTDALRFGLCAYTSQGRDINLDVNRILGYRHFCNKLWNATKFALRGLGKG 541
DFP GIPECGTDALRF LC++ Q D++L V+ + RHFCNK+WNA +F L LG+
Sbjct: 704 KDFPHGIPECGTDALRFTLCSHGVQAGDLHLSVSEVQSCRHFCNKIWNALRFILNALGEK 763
Query: 542 FVPSATSEPGGRESLADRWIRSRLTEAVRLSNQGFQAYDFPAVTTAQYSFWLYELCDVYL 721
FVP E S D WI SRL A + +GF + VT A + FWL+ LCDVYL
Sbjct: 764 FVPQPAEEL-SPSSPMDAWILSRLALAAQECERGFLTRELSLVTHALHHFWLHNLCDVYL 822
Query: 722 ECLKPVLNGVDQVAAESARQTLYTCLDVGLRLLSPFMPFVTEELFQRLPRRTPQAPPSLC 901
E +KPVL + Q L++C D+GLRLL+P MPF+ EEL+QRLP R P PP+
Sbjct: 823 EAVKPVLWHSPRPLGPP--QVLFSCADLGLRLLAPLMPFLAEELWQRLPPR-PGCPPAPS 879
Query: 902 VTSYPEPSECS---WKDPEAEAAFELALSITRAVRSLRADYNLTRIRPDCFLEVADEATG 1072
++ P PS CS W+ PE E F + + +R+LRA Y LT+ RP L+ ++
Sbjct: 880 ISVAPYPSACSLEHWRQPELERRFSRVQEVVQVLRALRATYQLTKARPRVLLQSSEPGDQ 939
Query: 1073 ALASAVSGYVQTLASAGIVAVLALGASAPQGCAVALASDRCSVHLQLQGLVDPARELGKL 1252
L A + TL G V +L GA+AP G A A SD V+++LQGLVDP +L L
Sbjct: 940 GLFEAFLEPLGTLGYCGAVGLLPPGAAAPSGWAQAPLSDTAQVYMELQGLVDPQIQLPLL 999
Query: 1253 QAK 1261
A+
Sbjct: 1000 AAR 1002
>ref|NP_060530.3| isoleucyl-tRNA synthetase, mitochondrial precursor [Homo sapiens].
Length = 1012
Score = 89.0 bits (219), Expect = 9e-18
Identities = 87/329 (26%), Positives = 137/329 (41%), Gaps = 2/329 (0%)
Frame = +2
Query: 2 DTWFSSGLFPFSILGWPNQSEDLSVFYPGTLLETGHDILFFWVARMVMLGLKLTGKLPFK 181
D WF SG +L P+Q DL + G D L W ++ + + P+K
Sbjct: 598 DIWFDSGTSWSYVLPGPDQRADLYL--------EGKDQLGGWFQSSLLTSVAARKRAPYK 649
Query: 182 EVYLHAIVRDAHGRKMSKSLGNVIDPLDVIHGVSLQGLHNQLVNSNLDPSEMEKAKEGQK 361
V +H G KMSKSLGNVI P V++G +++KE
Sbjct: 650 TVIVHGFTLGEKGEKMSKSLGNVIHPDVVVNG------------------GQDQSKE--- 688
Query: 362 ADFPAGIPECGTDALRFGLCAYTSQGRDINLDVNRILGYRHFCNKLWNATKFALRGLGKG 541
P G D LR+ + A ++ ++ + + + R +KL N +F L G
Sbjct: 689 -------PPYGADVLRWWV-ADSNVFTEVAIGPSVLNAARDDISKLRNTLRFLL-GNVAD 739
Query: 542 FVPSATSEPGGRESLADRWIRSRLTEAVRLSNQGFQAYDFPAVTTAQYSFWLYELCDVYL 721
F P S P + D+++ L + + ++ YDF V +F+ EL + Y
Sbjct: 740 FNPETDSIPVNDMYVIDQYMLHLLQDLANKITELYKQYDFGKVVRLLRTFYTRELSNFYF 799
Query: 722 ECLKPVL--NGVDQVAAESARQTLYTCLDVGLRLLSPFMPFVTEELFQRLPRRTPQAPPS 895
+K L + S + L LDV +R +P +P + EE+FQ +P + P S
Sbjct: 800 SIIKDRLYCEKENDPKRRSCQTALVEILDVIVRSFAPILPHLAEEVFQHIP--YIKEPKS 857
Query: 896 LCVTSYPEPSECSWKDPEAEAAFELALSI 982
+ T + S WK P E A E A ++
Sbjct: 858 VFRTGWISTSSI-WKKPGLEEAVESACAM 885
>ref|NP_038203.2| isoleucyl-tRNA synthetase, cytoplasmic [Homo sapiens].
Length = 1262
Score = 70.9 bits (172), Expect = 3e-12
Identities = 76/296 (25%), Positives = 128/296 (43%), Gaps = 8/296 (2%)
Frame = +2
Query: 2 DTWFSSGLFPFSILGWPNQSE-DLSVFYPGTLLETGHDILFFWVARMVMLGLKLTGKLPF 178
D WF SG P++ + +P +++ + +P + G D W +++L L G+ PF
Sbjct: 525 DCWFESGSMPYAQVHYPFENKREFEDAFPADFIAEGIDQTRGWFYTLLVLATALFGQPPF 584
Query: 179 KEVYLHAIVRDAHGRKMSKSLGNVIDPLDVIHGVSLQGLHNQLVNSNLDPSEMEKAKEGQ 358
K V ++ +V + G+KMSK N DP+ +I L L+NS + +E + KE
Sbjct: 585 KNVIVNGLVLASDGQKMSKRKKNYPDPVSIIQKYGADALRLYLINSPVVRAENLRFKE-- 642
Query: 359 KADFPAGIPECGTDALRFGLCAYTSQGRDINLDVNRILGYRHFCNKLWNATKF----ALR 526
G+ RD+ DV +L + +NA +F LR
Sbjct: 643 -----EGV-------------------RDVLKDV--LLPW-------YNAYRFLIQNVLR 669
Query: 527 GLGKGFVPSATSEPGGRES--LADRWIRSRLTEAVRLSNQGFQAYDFPAVTTAQYSFWLY 700
+ + +E RES + DRWI S + + AY V F +
Sbjct: 670 LQKEEEIEFLYNENTVRESPNITDRWILSFMQSLIGFFETEMAAYRLYTVVPRLVKF-VD 728
Query: 701 ELCDVYLECLKPVLNGVDQVA-AESARQTLYTCLDVGLRLLSPFMPFVTEELFQRL 865
L + Y+ + L G + + A +TL++ L RL++P+ PF+TE ++Q L
Sbjct: 729 ILTNWYVRMNRRRLKGENGMEDCVMALETLFSVLLSLCRLMAPYTPFLTELMYQNL 784
>ref|NP_002152.2| isoleucyl-tRNA synthetase, cytoplasmic [Homo sapiens].
Length = 1262
Score = 70.9 bits (172), Expect = 3e-12
Identities = 76/296 (25%), Positives = 128/296 (43%), Gaps = 8/296 (2%)
Frame = +2
Query: 2 DTWFSSGLFPFSILGWPNQSE-DLSVFYPGTLLETGHDILFFWVARMVMLGLKLTGKLPF 178
D WF SG P++ + +P +++ + +P + G D W +++L L G+ PF
Sbjct: 525 DCWFESGSMPYAQVHYPFENKREFEDAFPADFIAEGIDQTRGWFYTLLVLATALFGQPPF 584
Query: 179 KEVYLHAIVRDAHGRKMSKSLGNVIDPLDVIHGVSLQGLHNQLVNSNLDPSEMEKAKEGQ 358
K V ++ +V + G+KMSK N DP+ +I L L+NS + +E + KE
Sbjct: 585 KNVIVNGLVLASDGQKMSKRKKNYPDPVSIIQKYGADALRLYLINSPVVRAENLRFKE-- 642
Query: 359 KADFPAGIPECGTDALRFGLCAYTSQGRDINLDVNRILGYRHFCNKLWNATKF----ALR 526
G+ RD+ DV +L + +NA +F LR
Sbjct: 643 -----EGV-------------------RDVLKDV--LLPW-------YNAYRFLIQNVLR 669
Query: 527 GLGKGFVPSATSEPGGRES--LADRWIRSRLTEAVRLSNQGFQAYDFPAVTTAQYSFWLY 700
+ + +E RES + DRWI S + + AY V F +
Sbjct: 670 LQKEEEIEFLYNENTVRESPNITDRWILSFMQSLIGFFETEMAAYRLYTVVPRLVKF-VD 728
Query: 701 ELCDVYLECLKPVLNGVDQVA-AESARQTLYTCLDVGLRLLSPFMPFVTEELFQRL 865
L + Y+ + L G + + A +TL++ L RL++P+ PF+TE ++Q L
Sbjct: 729 ILTNWYVRMNRRRLKGENGMEDCVMALETLFSVLLSLCRLMAPYTPFLTELMYQNL 784
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 47,096,769
Number of extensions: 1305280
Number of successful extensions: 5485
Number of sequences better than 1.0e-05: 7
Number of HSP's gapped: 5460
Number of HSP's successfully gapped: 7
Length of query: 448
Length of database: 18,297,164
Length adjustment: 106
Effective length of query: 342
Effective length of database: 14,802,980
Effective search space: 5062619160
Effective search space used: 5062619160
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-004169
(1345 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_035820.3| valyl-tRNA synthetase [Mus musculus]. 821 0.0
Alignment gi|NP_780346.3| valyl-tRNA synthetase, mitochondrial precursor ... 414 e-115
Alignment gi|NP_941055.1| isoleucyl-tRNA synthetase, mitochondrial precur... 92 9e-19
Alignment gi|NP_742012.2| isoleucyl-tRNA synthetase, cytoplasmic [Mus mus... 73 4e-13
>ref|NP_035820.3| valyl-tRNA synthetase [Mus musculus].
Length = 1263
Score = 821 bits (2120), Expect = 0.0
Identities = 405/448 (90%), Positives = 419/448 (93%)
Frame = +2
Query: 2 DTWFSSGLFPFSILGWPNQSEDLSVFYPGTLLETGHDILFFWVARMVMLGLKLTGKLPFK 181
DTWFSSGLFPFSI GWPNQSEDLSVFYPGTLLETGHDILFFWVARMVMLGLKLTGKLPF+
Sbjct: 787 DTWFSSGLFPFSIFGWPNQSEDLSVFYPGTLLETGHDILFFWVARMVMLGLKLTGKLPFR 846
Query: 182 EVYLHAIVRDAHGRKMSKSLGNVIDPLDVIHGVSLQGLHNQLVNSNLDPSEMEKAKEGQK 361
EVYLHAIVRDAHGRKMSKSLGNVIDPLDVIHGVSLQGL++QL+NSNLDPSE+EKAKEGQK
Sbjct: 847 EVYLHAIVRDAHGRKMSKSLGNVIDPLDVIHGVSLQGLYDQLLNSNLDPSEVEKAKEGQK 906
Query: 362 ADFPAGIPECGTDALRFGLCAYTSQGRDINLDVNRILGYRHFCNKLWNATKFALRGLGKG 541
ADFPAGIPECGTDALRFGLCAYTSQGRDINLDVNRILGYRHFCNKLWNATKFALRGLGKG
Sbjct: 907 ADFPAGIPECGTDALRFGLCAYTSQGRDINLDVNRILGYRHFCNKLWNATKFALRGLGKG 966
Query: 542 FVPSATSEPGGRESLADRWIRSRLTEAVRLSNQGFQAYDFPAVTTAQYSFWLYELCDVYL 721
FVPSATS+P G ESL DRWIRSRLTEAVRLSN+GFQAYDFPA+TTAQYSFWLYELCDVYL
Sbjct: 967 FVPSATSKPEGHESLVDRWIRSRLTEAVRLSNEGFQAYDFPAITTAQYSFWLYELCDVYL 1026
Query: 722 ECLKPVLNGVDQVAAESARQTLYTCLDVGLRLLSPFMPFVTEELFQRLPRRTPQAPPSLC 901
ECLKPVLNGVDQVAAE ARQTLYTCLDVGLRLLSPFMPFVTEELFQRLPRRTP+AP SLC
Sbjct: 1027 ECLKPVLNGVDQVAAECARQTLYTCLDVGLRLLSPFMPFVTEELFQRLPRRTPKAPASLC 1086
Query: 902 VTSYPEPSECSWKDPEAEAAFELALSITRAVRSLRADYNLTRIRPDCFLEVADEATGALA 1081
VT YPEPSECSWKDPEAEAA ELALSITRAVRSLRADYNLTR RPDCFLEVADEATGALA
Sbjct: 1087 VTPYPEPSECSWKDPEAEAALELALSITRAVRSLRADYNLTRTRPDCFLEVADEATGALA 1146
Query: 1082 SAVSGYVQTLASAGIVAVLALGASAPQGCAVALASDRCSVHLQLQGLVDPARELGKLQAK 1261
SAVSGYVQ LASAG+VAVLALGA APQGCAVA+ASDRCS+HLQLQGLVDPARELGKLQAK
Sbjct: 1147 SAVSGYVQALASAGVVAVLALGAPAPQGCAVAVASDRCSIHLQLQGLVDPARELGKLQAK 1206
Query: 1262 XXXXXXXXXXXXXXXXXSSYSVQVPLKV 1345
SSYS +VPL+V
Sbjct: 1207 RSEAQRQAQRLQERRAASSYSAKVPLEV 1234
>ref|NP_780346.3| valyl-tRNA synthetase, mitochondrial precursor [Mus musculus].
Length = 1060
Score = 414 bits (1063), Expect = e-115
Identities = 216/423 (51%), Positives = 270/423 (63%), Gaps = 3/423 (0%)
Frame = +2
Query: 2 DTWFSSGLFPFSILGWPNQSEDLSVFYPGTLLETGHDILFFWVARMVMLGLKLTGKLPFK 181
DTWFSS LFPFS LGWP ++ DL+ FYP TLLETG D+L FWV RMVMLG +LTG+LPF
Sbjct: 585 DTWFSSALFPFSALGWPRETPDLAHFYPLTLLETGSDLLMFWVGRMVMLGTQLTGQLPFS 644
Query: 182 EVYLHAIVRDAHGRKMSKSLGNVIDPLDVIHGVSLQGLHNQLVNSNLDPSEMEKAKEGQK 361
+V LH++VRD GRKMSKSLGNV+DP D+I G LQ L +L + NLDP E+ A QK
Sbjct: 645 KVLLHSMVRDRQGRKMSKSLGNVLDPRDIISGQELQVLQAKLRDGNLDPGELAVAAAAQK 704
Query: 362 ADFPAGIPECGTDALRFGLCAYTSQGRDINLDVNRILGYRHFCNKLWNATKFALRGLGKG 541
DFP GIPECGTDALRF LC++ G D++L V+ +L YRHFCNKLWNA +F LR LG
Sbjct: 705 KDFPYGIPECGTDALRFALCSHGILGGDLHLSVSEVLNYRHFCNKLWNALRFVLRALGDN 764
Query: 542 FVPSATSEPGGRESLADRWIRSRLTEAVRLSNQGFQAYDFPAVTTAQYSFWLYELCDVYL 721
FVP E S D WI SRL A +GF + + VT Y FWL+ LCDVYL
Sbjct: 765 FVPQPAEEV-TPSSPMDAWILSRLAFAASECERGFLSRELSLVTHTLYHFWLHNLCDVYL 823
Query: 722 ECLKPVLNGVDQVAAESARQTLYTCLDVGLRLLSPFMPFVTEELFQRLPRRTPQAP--PS 895
E +KPVL+ V + Q L++C DVGLRLL+P MPF+ EEL+QRLP R P P PS
Sbjct: 824 EAVKPVLSSVPR--PPGPPQVLFSCADVGLRLLAPLMPFLAEELWQRLPPR-PGGPLAPS 880
Query: 896 LCVTSYPEPSECS-WKDPEAEAAFELALSITRAVRSLRADYNLTRIRPDCFLEVADEATG 1072
+CV YP W+ PE E F + +A+R+LRA Y LT+ RP L+ +D
Sbjct: 881 ICVAPYPSTRSLEFWRQPELERCFSRVQEVVQALRALRATYQLTKARPQVLLQCSDPGEQ 940
Query: 1073 ALASAVSGYVQTLASAGIVAVLALGASAPQGCAVALASDRCSVHLQLQGLVDPARELGKL 1252
L + L+ G V L+ GA+AP G A+ D ++++LQGLVDP +L +L
Sbjct: 941 GLVQPFLEPLGILSHCGAVGFLSPGAAAPSGWALTPLGDTMKIYMELQGLVDPQSQLPRL 1000
Query: 1253 QAK 1261
A+
Sbjct: 1001 TAR 1003
>ref|NP_941055.1| isoleucyl-tRNA synthetase, mitochondrial precursor [Mus musculus].
Length = 1012
Score = 92.0 bits (227), Expect = 9e-19
Identities = 88/329 (26%), Positives = 132/329 (40%), Gaps = 2/329 (0%)
Frame = +2
Query: 2 DTWFSSGLFPFSILGWPNQSEDLSVFYPGTLLETGHDILFFWVARMVMLGLKLTGKLPFK 181
D WF SG +L Q DL + G D L W ++ + K PF+
Sbjct: 598 DIWFDSGTSWSCVLQDTQQRADLYL--------EGKDQLGGWFQSSLLTSVATRSKAPFR 649
Query: 182 EVYLHAIVRDAHGRKMSKSLGNVIDPLDVIHGVSLQGLHNQLVNSNLDPSEMEKAKEGQK 361
V +H G KMSKSLGNVI+P +I G + +KE
Sbjct: 650 TVMVHGFTLGEKGEKMSKSLGNVINPDTIISGGK------------------DHSKE--- 688
Query: 362 ADFPAGIPECGTDALRFGLCAYTSQGRDINLDVNRILGYRHFCNKLWNATKFALRGLGKG 541
P G D LR+ + A ++ ++ + + + R +KL N +F L L G
Sbjct: 689 -------PPYGADILRWWI-AESNVFTEVTIGPSVLSAARDDISKLRNTLRFLLGNL-TG 739
Query: 542 FVPSATSEPGGRESLADRWIRSRLTEAVRLSNQGFQAYDFPAVTTAQYSFWLYELCDVYL 721
F P S P + D+++ + + ++ YDF V +F+ EL Y
Sbjct: 740 FNPETDSVPVKNMYVIDQYMLHLIQDFATKITDSYKQYDFGKVVRLLKAFYTRELSSFYF 799
Query: 722 ECLKPVL--NGVDQVAAESARQTLYTCLDVGLRLLSPFMPFVTEELFQRLPRRTPQAPPS 895
+K L S + L LDV +R +P +P + EE+FQ +P T P S
Sbjct: 800 SIVKDRLYCENEKDPKRRSCQTALAEILDVLVRAFAPILPHLAEEVFQHIPYVT--EPKS 857
Query: 896 LCVTSYPEPSECSWKDPEAEAAFELALSI 982
+ T + S WK P E A E A ++
Sbjct: 858 VFRTGWINTSSI-WKKPGLEEAVESACAM 885
>ref|NP_742012.2| isoleucyl-tRNA synthetase, cytoplasmic [Mus musculus].
Length = 1262
Score = 73.2 bits (178), Expect = 4e-13
Identities = 74/292 (25%), Positives = 123/292 (42%), Gaps = 4/292 (1%)
Frame = +2
Query: 2 DTWFSSGLFPFSILGWPNQSE-DLSVFYPGTLLETGHDILFFWVARMVMLGLKLTGKLPF 178
D WF SG P++ + +P +S+ + +P + G D W +++L L G+ PF
Sbjct: 525 DCWFESGSMPYAQVHYPFESKREFEDAFPADFIAEGIDQTRGWFYTLLVLATALFGQPPF 584
Query: 179 KEVYLHAIVRDAHGRKMSKSLGNVIDPLDVIHGVSLQGLHNQLVNSNLDPSEMEKAKEGQ 358
K V ++ ++ + G+KMSK N DP+ +I L L+NS + +E + KE
Sbjct: 585 KNVIVNGLILASDGQKMSKRKKNYPDPVSIIDKYGADALRLYLINSPVVRAENLRFKE-- 642
Query: 359 KADFPAGIPECGTDALRFGLCAYTSQGRDINLDVNRILGYRHFCNKLWNATKFALRGLGK 538
E D L+ L + + YR F ++ K +
Sbjct: 643 ---------EGVRDVLKDVLLPWYN-------------AYRFFIQNVFRLHK-------E 673
Query: 539 GFVPSATSEPGGRES--LADRWIRSRLTEAVRLSNQGFQAYDFPAVTTAQYSFWLYELCD 712
V +E RES + DRW+ S + + AY V F + L +
Sbjct: 674 EEVKFLYNEHTVRESPNITDRWVLSFMQSLLGFFETEMAAYRLYTVVPRLVKF-VDILTN 732
Query: 713 VYLECLKPVLNGVDQVA-AESARQTLYTCLDVGLRLLSPFMPFVTEELFQRL 865
Y+ + L G V A +TL++ L RL++P+ PF+TE ++Q L
Sbjct: 733 WYVRMNRRRLKGESGVEDCVMALETLFSVLLSLCRLMAPYTPFLTELMYQNL 784
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 39,584,023
Number of extensions: 1070511
Number of successful extensions: 4381
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 4359
Number of HSP's successfully gapped: 5
Length of query: 448
Length of database: 15,617,559
Length adjustment: 105
Effective length of query: 343
Effective length of database: 12,463,779
Effective search space: 4275076197
Effective search space used: 4275076197
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-004169
(1345 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001182307.1| valyl-tRNA synthetase [Sus scrofa]. 862 0.0
Alignment gi|NP_001116686.1| valyl-tRNA synthetase, mitochondrial precurs... 402 e-112
Alignment gi|XP_003130553.1| PREDICTED: isoleucyl-tRNA synthetase, mitoch... 96 6e-20
>ref|NP_001182307.1| valyl-tRNA synthetase [Sus scrofa].
Length = 1265
Score = 862 bits (2226), Expect = 0.0
Identities = 430/448 (95%), Positives = 431/448 (96%)
Frame = +2
Query: 2 DTWFSSGLFPFSILGWPNQSEDLSVFYPGTLLETGHDILFFWVARMVMLGLKLTGKLPFK 181
DTWFSSGLFPFSILGWPNQSEDLSVFYPGTLLETGHDILFFWVARMVMLGLKLTGKLPFK
Sbjct: 789 DTWFSSGLFPFSILGWPNQSEDLSVFYPGTLLETGHDILFFWVARMVMLGLKLTGKLPFK 848
Query: 182 EVYLHAIVRDAHGRKMSKSLGNVIDPLDVIHGVSLQGLHNQLVNSNLDPSEMEKAKEGQK 361
EVYLHAIVRDAHGRKMSKSLGNVIDPLDVIHGVSLQGLHNQLVNSNLDPSEMEKAKEGQK
Sbjct: 849 EVYLHAIVRDAHGRKMSKSLGNVIDPLDVIHGVSLQGLHNQLVNSNLDPSEMEKAKEGQK 908
Query: 362 ADFPAGIPECGTDALRFGLCAYTSQGRDINLDVNRILGYRHFCNKLWNATKFALRGLGKG 541
ADFPAGIPECGTDALRFGLCAYTSQGRDINLDVNRILGYRHFCNKLWNATKFALRGLGKG
Sbjct: 909 ADFPAGIPECGTDALRFGLCAYTSQGRDINLDVNRILGYRHFCNKLWNATKFALRGLGKG 968
Query: 542 FVPSATSEPGGRESLADRWIRSRLTEAVRLSNQGFQAYDFPAVTTAQYSFWLYELCDVYL 721
FVPSATSEPGGRESLADRWIRSRLTEAVRLSNQGFQAYDFPAVTTAQYSFWLYELCDVYL
Sbjct: 969 FVPSATSEPGGRESLADRWIRSRLTEAVRLSNQGFQAYDFPAVTTAQYSFWLYELCDVYL 1028
Query: 722 ECLKPVLNGVDQVAAESARQTLYTCLDVGLRLLSPFMPFVTEELFQRLPRRTPQAPPSLC 901
ECLKPVLNGVDQVAAESARQTLYTCLDVGLRLLSPFMPFVTEELFQRLPRRTPQAPPSLC
Sbjct: 1029 ECLKPVLNGVDQVAAESARQTLYTCLDVGLRLLSPFMPFVTEELFQRLPRRTPQAPPSLC 1088
Query: 902 VTSYPEPSECSWKDPEAEAAFELALSITRAVRSLRADYNLTRIRPDCFLEVADEATGALA 1081
VTSYPEPSECSWKDPEAEAAFELALSITRAVRSLRADYNLTRIRPDCFLEVADEATGALA
Sbjct: 1089 VTSYPEPSECSWKDPEAEAAFELALSITRAVRSLRADYNLTRIRPDCFLEVADEATGALA 1148
Query: 1082 SAVSGYVQTLASAGIVAVLALGASAPQGCAVALASDRCSVHLQLQGLVDPARELGKLQAK 1261
SAVSGYVQTLASAGIVAVLALGASAPQGCAVALASDRCSVHLQLQGLVDPARELGKLQAK
Sbjct: 1149 SAVSGYVQTLASAGIVAVLALGASAPQGCAVALASDRCSVHLQLQGLVDPARELGKLQAK 1208
Query: 1262 XXXXXXXXXXXXXXXXXSSYSVQVPLKV 1345
SSYSV+VPLKV
Sbjct: 1209 RDEAQRQAQRLQERRAASSYSVKVPLKV 1236
>ref|NP_001116686.1| valyl-tRNA synthetase, mitochondrial precursor [Sus scrofa].
Length = 1062
Score = 402 bits (1034), Expect = e-112
Identities = 210/422 (49%), Positives = 266/422 (63%), Gaps = 2/422 (0%)
Frame = +2
Query: 2 DTWFSSGLFPFSILGWPNQSEDLSVFYPGTLLETGHDILFFWVARMVMLGLKLTGKLPFK 181
DTWFSS LFPFS LGWP ++ DL+ FYP +LLETG D+L FWV RMVMLG +LTG+LPF
Sbjct: 585 DTWFSSALFPFSALGWPQETPDLARFYPLSLLETGSDLLLFWVGRMVMLGTQLTGQLPFS 644
Query: 182 EVYLHAIVRDAHGRKMSKSLGNVIDPLDVIHGVSLQGLHNQLVNSNLDPSEMEKAKEGQK 361
+V LH++VRD GRKMSKSLGNV+DP D+I+GV LQ L +L + NLDP+E+ A QK
Sbjct: 645 KVLLHSMVRDRQGRKMSKSLGNVLDPRDIINGVELQVLQEKLRDGNLDPAELAIAAAAQK 704
Query: 362 ADFPAGIPECGTDALRFGLCAYTSQGRDINLDVNRILGYRHFCNKLWNATKFALRGLGKG 541
DFP GIPECGTDALRF LC++ G D++L V+ +L +RHFCNK+WNA +F L LG+
Sbjct: 705 KDFPHGIPECGTDALRFTLCSHGVLGGDLHLSVSEVLSFRHFCNKIWNALRFILNALGEK 764
Query: 542 FVPSATSEPGGRESLADRWIRSRLTEAVRLSNQGFQAYDFPAVTTAQYSFWLYELCDVYL 721
F+P E + D WI S L + +GF + VT A + FWL+ LCDVYL
Sbjct: 765 FIPQPLEELCPTSPM-DAWILSCLARTAQECERGFLTRELALVTHALHHFWLHNLCDVYL 823
Query: 722 ECLKPVLNGVDQVAAESARQTLYTCLDVGLRLLSPFMPFVTEELFQRLPRRTPQ-APPSL 898
E +KPVL+ Q L++C DVGLRLL+P MPF+ EEL+QRLP R PS+
Sbjct: 824 EAVKPVLS--HSPRPPGPPQVLFSCADVGLRLLAPLMPFLAEELWQRLPLRPGNTTAPSI 881
Query: 899 CVTSYPEPSECS-WKDPEAEAAFELALSITRAVRSLRADYNLTRIRPDCFLEVADEATGA 1075
CV YP W PE E F +A+R+LRA Y LT+ RP L+ ++
Sbjct: 882 CVAPYPSAHSLEHWHQPELERRFSRVQEAVQALRALRATYQLTKARPRVLLQTSEPGEQG 941
Query: 1076 LASAVSGYVQTLASAGIVAVLALGASAPQGCAVALASDRCSVHLQLQGLVDPARELGKLQ 1255
L A G + TL G V L GA+AP A A SD V+++LQGLVDP L +L
Sbjct: 942 LFEAFLGPLSTLGHCGAVGFLPPGAAAPSSWAQASLSDTAQVYMELQGLVDPQTHLPRLA 1001
Query: 1256 AK 1261
A+
Sbjct: 1002 AR 1003
>ref|XP_003130553.1| PREDICTED: isoleucyl-tRNA synthetase, mitochondrial [Sus scrofa].
Length = 1012
Score = 95.5 bits (236), Expect = 6e-20
Identities = 91/329 (27%), Positives = 136/329 (41%), Gaps = 2/329 (0%)
Frame = +2
Query: 2 DTWFSSGLFPFSILGWPNQSEDLSVFYPGTLLETGHDILFFWVARMVMLGLKLTGKLPFK 181
D WF SG +L +Q DL + G D L W ++ + K PFK
Sbjct: 598 DIWFDSGTSWSYVLPGTDQRADLYL--------EGKDQLGGWFQSSLLTSVAARRKSPFK 649
Query: 182 EVYLHAIVRDAHGRKMSKSLGNVIDPLDVIHGVSLQGLHNQLVNSNLDPSEMEKAKEGQK 361
V +H G KMSKSLGNVIDP VI+G +++KE
Sbjct: 650 TVVVHGFTLGEKGEKMSKSLGNVIDPDVVING------------------GQDQSKE--- 688
Query: 362 ADFPAGIPECGTDALRFGLCAYTSQGRDINLDVNRILGYRHFCNKLWNATKFALRGLGKG 541
P G D LR+ + A ++ ++ + + + R +KL N +F L G G
Sbjct: 689 -------PPFGADVLRWWV-AESNVFTEVTISPSVLRAARDDVSKLRNTLRFLL-GNVAG 739
Query: 542 FVPSATSEPGGRESLADRWIRSRLTEAVRLSNQGFQAYDFPAVTTAQYSFWLYELCDVYL 721
F P S P + D+++ L + ++ YDF V +F+ EL Y
Sbjct: 740 FNPETDSVPVNDMYVIDQYMLHLLQDLANKVTDAYKQYDFGKVVRLLRAFYTRELSTFYF 799
Query: 722 ECLKPVL--NGVDQVAAESARQTLYTCLDVGLRLLSPFMPFVTEELFQRLPRRTPQAPPS 895
+K L S + L LDV +R +P +P + EE+FQ +P + P S
Sbjct: 800 SIIKDRLYCENAKDPKRRSCQTALAEILDVLVRSFAPILPHLAEEVFQYVP--YAKEPKS 857
Query: 896 LCVTSYPEPSECSWKDPEAEAAFELALSI 982
+ T + + S WK P E A E A ++
Sbjct: 858 VFRTGWIKTSPI-WKKPGLEEAIEGACAM 885
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 29,885,599
Number of extensions: 846008
Number of successful extensions: 3815
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 3800
Number of HSP's successfully gapped: 3
Length of query: 448
Length of database: 11,343,932
Length adjustment: 102
Effective length of query: 346
Effective length of database: 8,804,438
Effective search space: 3046335548
Effective search space used: 3046335548
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-004169
(1345 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|GL896314.1| Sus scrofa unplaced genomic scaffold chrU_scaffol... 262 4e-67
>gb|GL896314.1| Sus scrofa unplaced genomic scaffold chrU_scaffold667
Length = 9944
Score = 262 bits (132), Expect = 4e-67
Identities = 132/132 (100%)
Strand = Plus / Minus
Query: 55 ccagtcagaagatctgagtgtgttctaccctgggacactgctggagacgggccatgacat 114
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9561 ccagtcagaagatctgagtgtgttctaccctgggacactgctggagacgggccatgacat 9502
Query: 115 cctcttcttctgggtggccaggatggtcatgctcggcctgaagctcactggcaagctacc 174
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9501 cctcttcttctgggtggccaggatggtcatgctcggcctgaagctcactggcaagctacc 9442
Query: 175 cttcaaagaggt 186
||||||||||||
Sbjct: 9441 cttcaaagaggt 9430
Score = 230 bits (116), Expect = 2e-57
Identities = 116/116 (100%)
Strand = Plus / Minus
Query: 927 agtgctcctggaaggaccccgaggcagaggccgccttcgagctggccctgagcatcactc 986
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7002 agtgctcctggaaggaccccgaggcagaggccgccttcgagctggccctgagcatcactc 6943
Query: 987 gagctgtgcgctccctccgtgccgactacaacctcacccggatccggcccgactgt 1042
||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6942 gagctgtgcgctccctccgtgccgactacaacctcacccggatccggcccgactgt 6887
Score = 220 bits (111), Expect = 2e-54
Identities = 114/115 (99%)
Strand = Plus / Minus
Query: 1149 cttctgcaccccagggctgtgctgtggccctggcctctgaccgctgctccgtccacctgc 1208
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6637 cttctgcaccccagggctgtgctgtggccctggcctctgaccgctgctccgtccacctgc 6578
Query: 1209 agctgcaggggctggtagaccccgcccgggagctgggcaaactgcaagccaagcg 1263
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 6577 agctgcaggggctggtagaccccgcccgggagctgggcaaactgcaggccaagcg 6523
Score = 135 bits (68), Expect = 7e-29
Identities = 68/68 (100%)
Strand = Plus / Minus
Query: 614 actgaggccgtgaggctcagcaaccagggtttccaggcctacgacttcccggccgtcacc 673
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7760 actgaggccgtgaggctcagcaaccagggtttccaggcctacgacttcccggccgtcacc 7701
Query: 674 actgccca 681
||||||||
Sbjct: 7700 actgccca 7693
Score = 129 bits (65), Expect = 4e-27
Identities = 65/65 (100%)
Strand = Plus / Minus
Query: 803 gtcggcctgcggctgctctcacctttcatgcccttcgtgaccgaggagctgtttcagagg 862
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7297 gtcggcctgcggctgctctcacctttcatgcccttcgtgaccgaggagctgtttcagagg 7238
Query: 863 ctgcc 867
|||||
Sbjct: 7237 ctgcc 7233
Score = 129 bits (65), Expect = 4e-27
Identities = 65/65 (100%)
Strand = Plus / Minus
Query: 721 ggagtgcctgaagcctgtgctgaacggggtggaccaggtggcggccgagagcgcccgcca 780
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7462 ggagtgcctgaagcctgtgctgaacggggtggaccaggtggcggccgagagcgcccgcca 7403
Query: 781 gaccc 785
|||||
Sbjct: 7402 gaccc 7398
Score = 123 bits (62), Expect = 3e-25
Identities = 62/62 (100%)
Strand = Plus / Minus
Query: 287 cagggcctgcacaaccagctggtgaacagcaacctggatcccagtgagatggagaaggcc 346
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8938 cagggcctgcacaaccagctggtgaacagcaacctggatcccagtgagatggagaaggcc 8879
Query: 347 aa 348
||
Sbjct: 8878 aa 8877
Score = 123 bits (62), Expect = 3e-25
Identities = 62/62 (100%)
Strand = Plus / Minus
Query: 183 aggtctatctccacgccatcgtgcgggatgcccacggccggaagatgagcaagtctctgg 242
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9139 aggtctatctccacgccatcgtgcgggatgcccacggccggaagatgagcaagtctctgg 9080
Query: 243 gc 244
||
Sbjct: 9079 gc 9078
Score = 115 bits (58), Expect = 6e-23
Identities = 58/58 (100%)
Strand = Plus / Minus
Query: 1 ggacacttggttctcctccggcctcttccccttctccatcctgggctggcccaaccag 58
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9694 ggacacttggttctcctccggcctcttccccttctccatcctgggctggcccaaccag 9637
Score = 105 bits (53), Expect = 6e-20
Identities = 53/53 (100%)
Strand = Plus / Minus
Query: 356 cagaaggcagatttcccagcggggatccccgaatgcggcaccgacgctctccg 408
|||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8761 cagaaggcagatttcccagcggggatccccgaatgcggcaccgacgctctccg 8709
Score = 87.7 bits (44), Expect = 1e-14
Identities = 44/44 (100%)
Strand = Plus / Minus
Query: 1041 gtttcctggaagtggctgatgaggccacgggtgccctggcatcg 1084
||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6781 gtttcctggaagtggctgatgaggccacgggtgccctggcatcg 6738
Score = 73.8 bits (37), Expect = 2e-10
Identities = 37/37 (100%)
Strand = Plus / Minus
Query: 892 tagcctctgtgtcacctcctacccggagccttcagag 928
|||||||||||||||||||||||||||||||||||||
Sbjct: 7122 tagcctctgtgtcacctcctacccggagccttcagag 7086
Score = 71.9 bits (36), Expect = 9e-10
Identities = 36/36 (100%)
Strand = Plus / Minus
Query: 564 agcctggaggccgcgagagcctggcggaccgctgga 599
||||||||||||||||||||||||||||||||||||
Sbjct: 7896 agcctggaggccgcgagagcctggcggaccgctgga 7861
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 31,061,554
Number of extensions: 213
Number of successful extensions: 213
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 213
Number of HSP's successfully gapped: 13
Length of query: 1345
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1324
Effective length of database: 2,808,413,156
Effective search space: 3718339018544
Effective search space used: 3718339018544
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)