Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-004176
(950 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001091633.1| fucosyltransferase 7 [Bos taurus]. 352 4e-97
Alignment gi|NP_777161.1| alpha-(1,3)-fucosyltransferase [Bos taurus]. 180 2e-45
Alignment gi|NP_789821.1| galactoside 3(4)-L-fucosyltransferase [Bos taur... 174 8e-44
Alignment gi|NP_777160.1| alpha-(1,3)-fucosyltransferase [Bos taurus]. 153 2e-37
>ref|NP_001091633.1| fucosyltransferase 7 [Bos taurus].
Length = 342
Score = 352 bits (902), Expect = 4e-97
Identities = 176/268 (65%), Positives = 184/268 (68%)
Frame = +2
Query: 134 MPNAVLGPARSFRVXXXXXXXXXXXXXXXXXXXXXXXXXXPAPQPTITILVWHWPFATQP 313
M NA L P S R PAPQPTITILVWHWPFA+QP
Sbjct: 1 MQNAGLSPTPSLRALGGLAVAALLSTVWLWWRLGAAPGGAPAPQPTITILVWHWPFASQP 60
Query: 314 PELSSDTCARYGVVRCRLTTDRSLLASADAVVFHHRELXXXXXXXXXXXXXXGQPWVWAS 493
PEL DTC RYGV RCRLT +RSLLA ADAVVFHHREL GQPWVWAS
Sbjct: 61 PELPGDTCTRYGVARCRLTVNRSLLAGADAVVFHHRELQTQQARPPLAERPQGQPWVWAS 120
Query: 494 MESPSHTRGLGRLRGIFNWVLSYRRDSDIFVPYGCLEPREGTAPPLPAKSGVAVWVVSNF 673
MESPSHTRGLGRLRG+FNWVLSYRRDSDIFVPYG LEPREG APPLPAK G+A WVVSNF
Sbjct: 121 MESPSHTRGLGRLRGVFNWVLSYRRDSDIFVPYGRLEPREGPAPPLPAKRGLAAWVVSNF 180
Query: 674 XXXXXXXXXXXXXXPHLPVDVFGRASRQPLCADCLLPTVAQYLFYLSFENSQHRDYITEK 853
HL VDVFGRA+ QPLCA CLL VA Y FYLSFENS+HRDYITEK
Sbjct: 181 QKRQRRVQLYRQLALHLRVDVFGRAAGQPLCASCLLRAVAGYRFYLSFENSEHRDYITEK 240
Query: 854 FWQNALAAGTLPVVLGPPRATYEAFARP 937
FW+NAL AG +PVVLGPPRA YEA A P
Sbjct: 241 FWRNALLAGAVPVVLGPPRAAYEAVAPP 268
>ref|NP_777161.1| alpha-(1,3)-fucosyltransferase [Bos taurus].
Length = 398
Score = 180 bits (456), Expect = 2e-45
Identities = 110/268 (41%), Positives = 132/268 (49%), Gaps = 43/268 (16%)
Frame = +2
Query: 254 PAPQPTITILVWHWPFATQ--PPELSSDTCARYGVVRCRLTTDRSLLASADAVVFHHREL 427
P+P + +L+W PF + P D R+ + C L TDR+ A AV+FHHR+L
Sbjct: 51 PSPPRPVNVLLWWEPFRGRHNPRRPPPDCQRRFNISGCVLHTDRAAYEEAQAVLFHHRDL 110
Query: 428 XXXXXXXXXXXXXX--------------------------------GQPWVWASMESPSH 511
GQ WVW + ESPSH
Sbjct: 111 VKGPPDWPPPWGVQMPPVEEREGLVMDDEGQEAEAETSAALGPRPAGQRWVWMNFESPSH 170
Query: 512 TRGLGRLRG-IFNWVLSYRRDSDIFVPYGCLEPRE-------GTAPPLPAKSGVAVWVVS 667
+ GL L G IFNW LSYR DSDIFVPYG L PR G PPL K G+ WVVS
Sbjct: 171 SPGLQGLAGNIFNWTLSYRADSDIFVPYGYLYPRTHPSEQPPGLVPPLARKQGLVAWVVS 230
Query: 668 NFXXXXXXXXXXXXXXPHLPVDVFGRASR-QPLCADCLLPTVAQYLFYLSFENSQHRDYI 844
N+ ++ VDVFG+ QPL L+ TVA+Y FYL+FENSQH DYI
Sbjct: 231 NWDERQARVRYYRQLSQYVTVDVFGKGGPGQPLPDAELVHTVARYKFYLAFENSQHLDYI 290
Query: 845 TEKFWQNALAAGTLPVVLGPPRATYEAF 928
TEK W+NA AG +PVVLGP R YE F
Sbjct: 291 TEKLWRNAFLAGAVPVVLGPNRTNYERF 318
>ref|NP_789821.1| galactoside 3(4)-L-fucosyltransferase [Bos taurus].
Length = 365
Score = 174 bits (442), Expect = 8e-44
Identities = 103/227 (45%), Positives = 124/227 (54%), Gaps = 5/227 (2%)
Frame = +2
Query: 272 ITILVWHWPFATQPPELSSDTCARYGVVRCRLTTDRSLLASADAVVFHHRELXXXXXXXX 451
+ +L+W WPF QP LS + G C+LT +RS ADAV HHRE+
Sbjct: 67 LRVLLWTWPF-NQPVALSRCSELWPGTADCQLTVNRSEYPQADAVFVHHREVSHRPKMQL 125
Query: 452 XXXXXXG-QPWVWASMESPSHTRGLGRLRGIFNWVLSYRRDSDIFVPYGCLEPREG---- 616
Q WVW SMESPS+ L L G FN +SYRRDSDIF+PYG LEP
Sbjct: 126 PPSPRPADQRWVWFSMESPSNCLKLKDLDGYFNLTMSYRRDSDIFMPYGWLEPWPSQPVE 185
Query: 617 TAPPLPAKSGVAVWVVSNFXXXXXXXXXXXXXXPHLPVDVFGRASRQPLCADCLLPTVAQ 796
T + AK+ + WVVSN+ PHL VDV+GR PL + ++Q
Sbjct: 186 TLLNISAKTKLVAWVVSNWNTDSIRVQYYKLLKPHLQVDVYGRF-HTPLPHALMAKQLSQ 244
Query: 797 YLFYLSFENSQHRDYITEKFWQNALAAGTLPVVLGPPRATYEAFARP 937
Y FYL+FENS H DYITEK W+NAL A +PVVLGP R YE F P
Sbjct: 245 YKFYLAFENSLHPDYITEKLWKNALQAWAVPVVLGPSRVNYEQFLPP 291
>ref|NP_777160.1| alpha-(1,3)-fucosyltransferase [Bos taurus].
Length = 359
Score = 153 bits (387), Expect = 2e-37
Identities = 89/221 (40%), Positives = 122/221 (55%), Gaps = 3/221 (1%)
Frame = +2
Query: 275 TILVWHWPFATQPPELSSDTCARYGVVRCRLTTDRSLLASADAVVFHHRELXXXXXXXXX 454
TIL+W WPF Q +L+S A + + C LTTDRSL + AV+ HHR++
Sbjct: 65 TILIWVWPFG-QTFDLTSCQ-AMFNIQGCHLTTDRSLYNKSHAVLIHHRDISWDLTNLPQ 122
Query: 455 XXXXXGQPWVWASMESPSHTRGLGRLRGIFNWVLSYRRDSDIFVPYGCLEPREGTAP--- 625
Q W+W ++ESP+HT + +FN L+YRRDSDI VPYG L T P
Sbjct: 123 QARPPFQKWIWMNLESPTHTPQKSGIEHLFNLTLTYRRDSDIQVPYGFL--TVSTNPFVF 180
Query: 626 PLPAKSGVAVWVVSNFXXXXXXXXXXXXXXPHLPVDVFGRASRQPLCADCLLPTVAQYLF 805
+P K + WVVSN+ + + +G+A + + L+PT++ F
Sbjct: 181 EVPNKEKLVCWVVSNWNPEHARVKYYNELSKSIEIHTYGQAFGEYVTDKNLIPTISTCKF 240
Query: 806 YLSFENSQHRDYITEKFWQNALAAGTLPVVLGPPRATYEAF 928
YLSFENS H+DYITEK + NA AG++PVVLGP R YE +
Sbjct: 241 YLSFENSIHKDYITEKLY-NAFLAGSVPVVLGPSRENYENY 280
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 33,869,139
Number of extensions: 1005270
Number of successful extensions: 7552
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 7356
Number of HSP's successfully gapped: 4
Length of query: 316
Length of database: 17,681,374
Length adjustment: 102
Effective length of query: 214
Effective length of database: 14,306,398
Effective search space: 3061569172
Effective search space used: 3061569172
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-004176
(950 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001005379.1| alpha-(1,3)-fucosyltransferase [Canis lupus ... 343 2e-94
Alignment gi|NP_001005378.1| fucosyltransferase 5 [Canis lupus familiaris]. 181 9e-46
Alignment gi|NP_001005380.1| alpha-(1,3)-fucosyltransferase [Canis lupus ... 154 2e-37
>ref|NP_001005379.1| alpha-(1,3)-fucosyltransferase [Canis lupus familiaris].
Length = 355
Score = 343 bits (879), Expect = 2e-94
Identities = 163/226 (72%), Positives = 177/226 (78%)
Frame = +2
Query: 254 PAPQPTITILVWHWPFATQPPELSSDTCARYGVVRCRLTTDRSLLASADAVVFHHRELXX 433
PAP T+ IL+WHWPF+ +PPEL S+TC +GV C L+T+ SLLASADAVVFHHREL
Sbjct: 54 PAPPHTLIILIWHWPFSDRPPELPSNTCISFGVAHCHLSTNHSLLASADAVVFHHRELQT 113
Query: 434 XXXXXXXXXXXXGQPWVWASMESPSHTRGLGRLRGIFNWVLSYRRDSDIFVPYGCLEPRE 613
GQPWVW SMESPSHT GLGRL GIFNWVLSYRRDSDIFVPYG LEP +
Sbjct: 114 QQARLPLAKRPRGQPWVWVSMESPSHTHGLGRLGGIFNWVLSYRRDSDIFVPYGQLEPHQ 173
Query: 614 GTAPPLPAKSGVAVWVVSNFXXXXXXXXXXXXXXPHLPVDVFGRASRQPLCADCLLPTVA 793
G APPLPAK VA WVVSNF PHL VDVFGRA+RQPLCA+CLLPTVA
Sbjct: 174 GPAPPLPAKKRVAAWVVSNFQERQRRVQVYRQLAPHLQVDVFGRANRQPLCANCLLPTVA 233
Query: 794 QYLFYLSFENSQHRDYITEKFWQNALAAGTLPVVLGPPRATYEAFA 931
QYLFYLSFENSQH+DYITEKFW+NALAAGT+PVVLGPPRATYEAFA
Sbjct: 234 QYLFYLSFENSQHQDYITEKFWRNALAAGTVPVVLGPPRATYEAFA 279
>ref|NP_001005378.1| fucosyltransferase 5 [Canis lupus familiaris].
Length = 350
Score = 181 bits (459), Expect = 9e-46
Identities = 105/224 (46%), Positives = 129/224 (57%), Gaps = 5/224 (2%)
Frame = +2
Query: 272 ITILVWHWPFATQPPELSSDTCARYGVVRCRLTTDRSLLASADAVVFHHRELXXXXXXXX 451
+ +L+W WPF P LS + G CRLT +RS+ ADAV+ HHRE+
Sbjct: 52 LLLLLWTWPFH-HPVALSPCSDMWPGTTDCRLTANRSVYPEADAVLVHHREVSYRPKEQL 110
Query: 452 XXXXXX-GQPWVWASMESPSHTRGLGRLRGIFNWVLSYRRDSDIFVPYGCLEPREGT-AP 625
GQ WVW SMESPSH L L G FN +SYRRDSDIF PYG LEP G A
Sbjct: 111 PTSPRPPGQRWVWFSMESPSHCAQLKALDGYFNLTMSYRRDSDIFTPYGWLEPWPGQPAA 170
Query: 626 PL---PAKSGVAVWVVSNFXXXXXXXXXXXXXXPHLPVDVFGRASRQPLCADCLLPTVAQ 796
PL AK+ + WVVSN+ H+ VDV+G+ + PL ++ T++Q
Sbjct: 171 PLVNLSAKTELVAWVVSNWREDSVRVRYYHKLQAHVQVDVYGQRHK-PLPQRNMIQTLSQ 229
Query: 797 YLFYLSFENSQHRDYITEKFWQNALAAGTLPVVLGPPRATYEAF 928
Y FYL+FENS H DYITEK W+NAL A +PVVLGP R +YE F
Sbjct: 230 YKFYLAFENSLHHDYITEKLWRNALDAWAVPVVLGPSRKSYEQF 273
>ref|NP_001005380.1| alpha-(1,3)-fucosyltransferase [Canis lupus familiaris].
Length = 359
Score = 154 bits (388), Expect = 2e-37
Identities = 89/221 (40%), Positives = 123/221 (55%), Gaps = 3/221 (1%)
Frame = +2
Query: 275 TILVWHWPFATQPPELSSDTCARYGVVRCRLTTDRSLLASADAVVFHHRELXXXXXXXXX 454
TIL+W WPF Q +L+S A + + C LTTDRSL + AV+ HHR++
Sbjct: 65 TILIWVWPFG-QTFDLTSCQ-AMFNIQGCHLTTDRSLYNKSHAVLIHHRDISWDLTNLPQ 122
Query: 455 XXXXXGQPWVWASMESPSHTRGLGRLRGIFNWVLSYRRDSDIFVPYGCLEPREGTAP--- 625
Q W+W ++ESP+HT + +FN L+YRRDSDI VPYG L T P
Sbjct: 123 QARPPFQKWIWMNLESPTHTPQKSGIEHLFNLTLTYRRDSDIQVPYGFL--TVSTNPFVF 180
Query: 626 PLPAKSGVAVWVVSNFXXXXXXXXXXXXXXPHLPVDVFGRASRQPLCADCLLPTVAQYLF 805
+P+K + WVVSN+ + + +G+A + + L+PT++ F
Sbjct: 181 EVPSKEKLVCWVVSNWNPEHARVKYYNELSKSIEIHTYGQAFGEYVNDKNLIPTISTCKF 240
Query: 806 YLSFENSQHRDYITEKFWQNALAAGTLPVVLGPPRATYEAF 928
YLSFENS H+DYITEK + NA AG++PVVLGP R YE +
Sbjct: 241 YLSFENSIHKDYITEKLY-NAFLAGSVPVVLGPSRENYENY 280
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 35,226,177
Number of extensions: 1029615
Number of successful extensions: 7882
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 7610
Number of HSP's successfully gapped: 3
Length of query: 316
Length of database: 18,874,504
Length adjustment: 103
Effective length of query: 213
Effective length of database: 15,440,896
Effective search space: 3288910848
Effective search space used: 3288910848
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-004176
(950 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_004470.1| alpha-(1,3)-fucosyltransferase [Homo sapiens]. 349 2e-96
Alignment gi|NP_002024.1| alpha-(1,3)-fucosyltransferase [Homo sapiens]. 187 9e-48
Alignment gi|NP_002025.2| alpha-(1,3)-fucosyltransferase [Homo sapiens]. 182 3e-46
Alignment gi|NP_001035791.1| alpha-(1,3)-fucosyltransferase [Homo sapiens]. 180 1e-45
Alignment gi|NP_000141.1| alpha-(1,3)-fucosyltransferase [Homo sapiens]. 180 1e-45
Alignment gi|NP_001091110.1| galactoside 3(4)-L-fucosyltransferase [Homo ... 171 9e-43
Alignment gi|NP_001091109.1| galactoside 3(4)-L-fucosyltransferase [Homo ... 171 9e-43
Alignment gi|NP_001091108.1| galactoside 3(4)-L-fucosyltransferase [Homo ... 171 9e-43
Alignment gi|NP_000140.1| galactoside 3(4)-L-fucosyltransferase [Homo sap... 171 9e-43
Alignment gi|NP_006572.2| alpha-(1,3)-fucosyltransferase [Homo sapiens]. 154 1e-37
>ref|NP_004470.1| alpha-(1,3)-fucosyltransferase [Homo sapiens].
Length = 342
Score = 349 bits (896), Expect = 2e-96
Identities = 167/225 (74%), Positives = 176/225 (78%)
Frame = +2
Query: 254 PAPQPTITILVWHWPFATQPPELSSDTCARYGVVRCRLTTDRSLLASADAVVFHHRELXX 433
PAPQPTITILVWHWPF QPPEL SDTC RYG+ RC L+ +RSLLASADAVVFHHREL
Sbjct: 41 PAPQPTITILVWHWPFTDQPPELPSDTCTRYGIARCHLSANRSLLASADAVVFHHRELQT 100
Query: 434 XXXXXXXXXXXXGQPWVWASMESPSHTRGLGRLRGIFNWVLSYRRDSDIFVPYGCLEPRE 613
GQPWVWASMESPSHT GL LRGIFNWVLSYRRDSDIFVPYG LEP
Sbjct: 101 RRSHLPLAQRPRGQPWVWASMESPSHTHGLSHLRGIFNWVLSYRRDSDIFVPYGRLEPHW 160
Query: 614 GTAPPLPAKSGVAVWVVSNFXXXXXXXXXXXXXXPHLPVDVFGRASRQPLCADCLLPTVA 793
G +PPLPAKS VA WVVSNF PHL VDVFGRA+ +PLCA CL+PTVA
Sbjct: 161 GPSPPLPAKSRVAAWVVSNFQERQLRARLYRQLAPHLRVDVFGRANGRPLCASCLVPTVA 220
Query: 794 QYLFYLSFENSQHRDYITEKFWQNALAAGTLPVVLGPPRATYEAF 928
QY FYLSFENSQHRDYITEKFW+NAL AGT+PVVLGPPRATYEAF
Sbjct: 221 QYRFYLSFENSQHRDYITEKFWRNALVAGTVPVVLGPPRATYEAF 265
>ref|NP_002024.1| alpha-(1,3)-fucosyltransferase [Homo sapiens].
Length = 530
Score = 187 bits (476), Expect = 9e-48
Identities = 112/268 (41%), Positives = 134/268 (50%), Gaps = 43/268 (16%)
Frame = +2
Query: 254 PAPQPTITILVWHWPFATQP--PELSSDTCARYGVVRCRLTTDRSLLASADAVVFHHREL 427
P P + +L+W PF + P D R+ + CRL TDR+ A AV+FHHR+L
Sbjct: 183 PTPSRPVGVLLWWEPFGGRDSAPRPPPDCRLRFNISGCRLLTDRASYGEAQAVLFHHRDL 242
Query: 428 XXXXXXXXXXXXXX--------------------------------GQPWVWASMESPSH 511
GQ WVW + ESPSH
Sbjct: 243 VKGPPDWPPPWGIQAHTAEEVDLRVLDYEEAAAAAEALATSSPRPPGQRWVWMNFESPSH 302
Query: 512 TRGLGRLRG-IFNWVLSYRRDSDIFVPYGCLEPRE-------GTAPPLPAKSGVAVWVVS 667
+ GL L +FNW LSYR DSD+FVPYG L PR G APPL K G+ WVVS
Sbjct: 303 SPGLRSLASNLFNWTLSYRADSDVFVPYGYLYPRSHPGDPPSGLAPPLSRKQGLVAWVVS 362
Query: 668 NFXXXXXXXXXXXXXXPHLPVDVFGRASR-QPLCADCLLPTVAQYLFYLSFENSQHRDYI 844
++ H+ VDVFGR QP+ LL TVA+Y FYL+FENSQH DYI
Sbjct: 363 HWDERQARVRYYHQLSQHVTVDVFGRGGPGQPVPEIGLLHTVARYKFYLAFENSQHLDYI 422
Query: 845 TEKFWQNALAAGTLPVVLGPPRATYEAF 928
TEK W+NAL AG +PVVLGP RA YE F
Sbjct: 423 TEKLWRNALLAGAVPVVLGPDRANYERF 450
>ref|NP_002025.2| alpha-(1,3)-fucosyltransferase [Homo sapiens].
Length = 374
Score = 182 bits (463), Expect = 3e-46
Identities = 104/229 (45%), Positives = 129/229 (56%), Gaps = 5/229 (2%)
Frame = +2
Query: 266 PTITILVWHWPFATQPPELSSDTCARYGVVRCRLTTDRSLLASADAVVFHHRELXXXXXX 445
PT+ IL+W WPF T P L + G C +T D S+ ADAV+ HH ++
Sbjct: 74 PTLLILLWTWPFNT-PVALPRCSEMVPGAADCNITADSSVYPQADAVIVHHWDIMYNPSA 132
Query: 446 XXXXXXXX-GQPWVWASMESPSHTRGLGRLRGIFNWVLSYRRDSDIFVPYGCLEPREGTA 622
GQ W+W SMESPS+ R L L G FN +SYR DSDIF PYG LEP G
Sbjct: 133 NLPPPTRPQGQRWIWFSMESPSNCRHLEALDGYFNLTMSYRSDSDIFTPYGWLEPWSGQP 192
Query: 623 --PPL--PAKSGVAVWVVSNFXXXXXXXXXXXXXXPHLPVDVFGRASRQPLCADCLLPTV 790
PPL AK+ + W VSN+ HL VDV+GR S +PL ++ T+
Sbjct: 193 AHPPLNLSAKTELVAWAVSNWKPDSARVRYYQSLQAHLKVDVYGR-SHKPLPKGTMMETL 251
Query: 791 AQYLFYLSFENSQHRDYITEKFWQNALAAGTLPVVLGPPRATYEAFARP 937
++Y FYL+FENS H DYITEK W+NAL A +PVVLGP R+ YE F P
Sbjct: 252 SRYKFYLAFENSLHPDYITEKLWRNALEAWAVPVVLGPSRSNYERFLPP 300
>ref|NP_001035791.1| alpha-(1,3)-fucosyltransferase [Homo sapiens].
Length = 359
Score = 180 bits (457), Expect = 1e-45
Identities = 102/225 (45%), Positives = 126/225 (56%), Gaps = 5/225 (2%)
Frame = +2
Query: 278 ILVWHWPFATQPPELSSDTCARYGVVRCRLTTDRSLLASADAVVFHHRE-LXXXXXXXXX 454
IL+W WPF +P L + G C +T DR + ADAV+ HHRE +
Sbjct: 64 ILLWTWPF-NKPIALPRCSEMVPGTADCNITADRKVYPQADAVIVHHREVMYNPSAQLPR 122
Query: 455 XXXXXGQPWVWASMESPSHTRGLGRLRGIFNWVLSYRRDSDIFVPYGCLEPREGTA--PP 628
GQ W+W SMESPSH L + G FN +SYR DSDIF PYG LEP G PP
Sbjct: 123 SPRRQGQRWIWFSMESPSHCWQLKAMDGYFNLTMSYRSDSDIFTPYGWLEPWSGQPAHPP 182
Query: 629 L--PAKSGVAVWVVSNFXXXXXXXXXXXXXXPHLPVDVFGRASRQPLCADCLLPTVAQYL 802
L AK+ + W VSN+ HL VDV+GR S +PL ++ T+++Y
Sbjct: 183 LNLSAKTELVAWAVSNWGPNSARVRYYQSLQAHLKVDVYGR-SHKPLPQGTMMETLSRYK 241
Query: 803 FYLSFENSQHRDYITEKFWQNALAAGTLPVVLGPPRATYEAFARP 937
FYL+FENS H DYITEK W+NAL A +PVVLGP R+ YE F P
Sbjct: 242 FYLAFENSLHPDYITEKLWRNALEAWAVPVVLGPSRSNYERFLPP 286
>ref|NP_000141.1| alpha-(1,3)-fucosyltransferase [Homo sapiens].
Length = 359
Score = 180 bits (457), Expect = 1e-45
Identities = 102/225 (45%), Positives = 126/225 (56%), Gaps = 5/225 (2%)
Frame = +2
Query: 278 ILVWHWPFATQPPELSSDTCARYGVVRCRLTTDRSLLASADAVVFHHRE-LXXXXXXXXX 454
IL+W WPF +P L + G C +T DR + ADAV+ HHRE +
Sbjct: 64 ILLWTWPF-NKPIALPRCSEMVPGTADCNITADRKVYPQADAVIVHHREVMYNPSAQLPR 122
Query: 455 XXXXXGQPWVWASMESPSHTRGLGRLRGIFNWVLSYRRDSDIFVPYGCLEPREGTA--PP 628
GQ W+W SMESPSH L + G FN +SYR DSDIF PYG LEP G PP
Sbjct: 123 SPRRQGQRWIWFSMESPSHCWQLKAMDGYFNLTMSYRSDSDIFTPYGWLEPWSGQPAHPP 182
Query: 629 L--PAKSGVAVWVVSNFXXXXXXXXXXXXXXPHLPVDVFGRASRQPLCADCLLPTVAQYL 802
L AK+ + W VSN+ HL VDV+GR S +PL ++ T+++Y
Sbjct: 183 LNLSAKTELVAWAVSNWGPNSARVRYYQSLQAHLKVDVYGR-SHKPLPQGTMMETLSRYK 241
Query: 803 FYLSFENSQHRDYITEKFWQNALAAGTLPVVLGPPRATYEAFARP 937
FYL+FENS H DYITEK W+NAL A +PVVLGP R+ YE F P
Sbjct: 242 FYLAFENSLHPDYITEKLWRNALEAWAVPVVLGPSRSNYERFLPP 286
>ref|NP_001091110.1| galactoside 3(4)-L-fucosyltransferase [Homo sapiens].
Length = 361
Score = 171 bits (433), Expect = 9e-43
Identities = 97/230 (42%), Positives = 126/230 (54%), Gaps = 5/230 (2%)
Frame = +2
Query: 263 QPTITILVWHWPFATQPPELSSDTCARYGVVRCRLTTDRSLLASADAVVFHHRELXXXXX 442
+PT+ IL+W WPF P LS + G C +T DR + AD V+ HH ++
Sbjct: 60 RPTLLILLWTWPFHI-PVALSRCSEMVPGTADCHITADRKVYPQADTVIVHHWDIMSNPK 118
Query: 443 XXXXXXXXX-GQPWVWASMESPSHTRGLGRLRGIFNWVLSYRRDSDIFVPYGCLEPREGT 619
GQ W+W ++E P + + L L FN +SYR DSDIF PYG LEP G
Sbjct: 119 SRLPPSPRPQGQRWIWFNLEPPPNCQHLEALDRYFNLTMSYRSDSDIFTPYGWLEPWSGQ 178
Query: 620 A--PPL--PAKSGVAVWVVSNFXXXXXXXXXXXXXXPHLPVDVFGRASRQPLCADCLLPT 787
PPL AK+ + W VSN+ HL VDV+GR S +PL ++ T
Sbjct: 179 PAHPPLNLSAKTELVAWAVSNWKPDSARVRYYQSLQAHLKVDVYGR-SHKPLPKGTMMET 237
Query: 788 VAQYLFYLSFENSQHRDYITEKFWQNALAAGTLPVVLGPPRATYEAFARP 937
+++Y FYL+FENS H DYITEK W+NAL A +PVVLGP R+ YE F P
Sbjct: 238 LSRYKFYLAFENSLHPDYITEKLWRNALEAWAVPVVLGPSRSNYERFLPP 287
>ref|NP_001091109.1| galactoside 3(4)-L-fucosyltransferase [Homo sapiens].
Length = 361
Score = 171 bits (433), Expect = 9e-43
Identities = 97/230 (42%), Positives = 126/230 (54%), Gaps = 5/230 (2%)
Frame = +2
Query: 263 QPTITILVWHWPFATQPPELSSDTCARYGVVRCRLTTDRSLLASADAVVFHHRELXXXXX 442
+PT+ IL+W WPF P LS + G C +T DR + AD V+ HH ++
Sbjct: 60 RPTLLILLWTWPFHI-PVALSRCSEMVPGTADCHITADRKVYPQADTVIVHHWDIMSNPK 118
Query: 443 XXXXXXXXX-GQPWVWASMESPSHTRGLGRLRGIFNWVLSYRRDSDIFVPYGCLEPREGT 619
GQ W+W ++E P + + L L FN +SYR DSDIF PYG LEP G
Sbjct: 119 SRLPPSPRPQGQRWIWFNLEPPPNCQHLEALDRYFNLTMSYRSDSDIFTPYGWLEPWSGQ 178
Query: 620 A--PPL--PAKSGVAVWVVSNFXXXXXXXXXXXXXXPHLPVDVFGRASRQPLCADCLLPT 787
PPL AK+ + W VSN+ HL VDV+GR S +PL ++ T
Sbjct: 179 PAHPPLNLSAKTELVAWAVSNWKPDSARVRYYQSLQAHLKVDVYGR-SHKPLPKGTMMET 237
Query: 788 VAQYLFYLSFENSQHRDYITEKFWQNALAAGTLPVVLGPPRATYEAFARP 937
+++Y FYL+FENS H DYITEK W+NAL A +PVVLGP R+ YE F P
Sbjct: 238 LSRYKFYLAFENSLHPDYITEKLWRNALEAWAVPVVLGPSRSNYERFLPP 287
>ref|NP_001091108.1| galactoside 3(4)-L-fucosyltransferase [Homo sapiens].
Length = 361
Score = 171 bits (433), Expect = 9e-43
Identities = 97/230 (42%), Positives = 126/230 (54%), Gaps = 5/230 (2%)
Frame = +2
Query: 263 QPTITILVWHWPFATQPPELSSDTCARYGVVRCRLTTDRSLLASADAVVFHHRELXXXXX 442
+PT+ IL+W WPF P LS + G C +T DR + AD V+ HH ++
Sbjct: 60 RPTLLILLWTWPFHI-PVALSRCSEMVPGTADCHITADRKVYPQADTVIVHHWDIMSNPK 118
Query: 443 XXXXXXXXX-GQPWVWASMESPSHTRGLGRLRGIFNWVLSYRRDSDIFVPYGCLEPREGT 619
GQ W+W ++E P + + L L FN +SYR DSDIF PYG LEP G
Sbjct: 119 SRLPPSPRPQGQRWIWFNLEPPPNCQHLEALDRYFNLTMSYRSDSDIFTPYGWLEPWSGQ 178
Query: 620 A--PPL--PAKSGVAVWVVSNFXXXXXXXXXXXXXXPHLPVDVFGRASRQPLCADCLLPT 787
PPL AK+ + W VSN+ HL VDV+GR S +PL ++ T
Sbjct: 179 PAHPPLNLSAKTELVAWAVSNWKPDSARVRYYQSLQAHLKVDVYGR-SHKPLPKGTMMET 237
Query: 788 VAQYLFYLSFENSQHRDYITEKFWQNALAAGTLPVVLGPPRATYEAFARP 937
+++Y FYL+FENS H DYITEK W+NAL A +PVVLGP R+ YE F P
Sbjct: 238 LSRYKFYLAFENSLHPDYITEKLWRNALEAWAVPVVLGPSRSNYERFLPP 287
>ref|NP_000140.1| galactoside 3(4)-L-fucosyltransferase [Homo sapiens].
Length = 361
Score = 171 bits (433), Expect = 9e-43
Identities = 97/230 (42%), Positives = 126/230 (54%), Gaps = 5/230 (2%)
Frame = +2
Query: 263 QPTITILVWHWPFATQPPELSSDTCARYGVVRCRLTTDRSLLASADAVVFHHRELXXXXX 442
+PT+ IL+W WPF P LS + G C +T DR + AD V+ HH ++
Sbjct: 60 RPTLLILLWTWPFHI-PVALSRCSEMVPGTADCHITADRKVYPQADTVIVHHWDIMSNPK 118
Query: 443 XXXXXXXXX-GQPWVWASMESPSHTRGLGRLRGIFNWVLSYRRDSDIFVPYGCLEPREGT 619
GQ W+W ++E P + + L L FN +SYR DSDIF PYG LEP G
Sbjct: 119 SRLPPSPRPQGQRWIWFNLEPPPNCQHLEALDRYFNLTMSYRSDSDIFTPYGWLEPWSGQ 178
Query: 620 A--PPL--PAKSGVAVWVVSNFXXXXXXXXXXXXXXPHLPVDVFGRASRQPLCADCLLPT 787
PPL AK+ + W VSN+ HL VDV+GR S +PL ++ T
Sbjct: 179 PAHPPLNLSAKTELVAWAVSNWKPDSARVRYYQSLQAHLKVDVYGR-SHKPLPKGTMMET 237
Query: 788 VAQYLFYLSFENSQHRDYITEKFWQNALAAGTLPVVLGPPRATYEAFARP 937
+++Y FYL+FENS H DYITEK W+NAL A +PVVLGP R+ YE F P
Sbjct: 238 LSRYKFYLAFENSLHPDYITEKLWRNALEAWAVPVVLGPSRSNYERFLPP 287
>ref|NP_006572.2| alpha-(1,3)-fucosyltransferase [Homo sapiens].
Length = 359
Score = 154 bits (389), Expect = 1e-37
Identities = 90/221 (40%), Positives = 123/221 (55%), Gaps = 3/221 (1%)
Frame = +2
Query: 275 TILVWHWPFATQPPELSSDTCARYGVVRCRLTTDRSLLASADAVVFHHRELXXXXXXXXX 454
TILVW WPF Q +L+S A + + C LTTDRSL + AV+ HHR++
Sbjct: 65 TILVWVWPFG-QTFDLTSCQ-AMFNIQGCHLTTDRSLYNKSHAVLIHHRDISWDLTNLPQ 122
Query: 455 XXXXXGQPWVWASMESPSHTRGLGRLRGIFNWVLSYRRDSDIFVPYGCLEPREGTAP--- 625
Q W+W ++ESP+HT + +FN L+YRRDSDI VPYG L T P
Sbjct: 123 QARPPFQKWIWMNLESPTHTPQKSGIEHLFNLTLTYRRDSDIQVPYGFL--TVSTNPFVF 180
Query: 626 PLPAKSGVAVWVVSNFXXXXXXXXXXXXXXPHLPVDVFGRASRQPLCADCLLPTVAQYLF 805
+P+K + WVVSN+ + + +G+A + + L+PT++ F
Sbjct: 181 EVPSKEKLVCWVVSNWNPEHARVKYYNELSKSIEIHTYGQAFGEYVNDKNLIPTISTCKF 240
Query: 806 YLSFENSQHRDYITEKFWQNALAAGTLPVVLGPPRATYEAF 928
YLSFENS H+DYITEK + NA AG++PVVLGP R YE +
Sbjct: 241 YLSFENSIHKDYITEKLY-NAFLAGSVPVVLGPSRENYENY 280
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 34,382,471
Number of extensions: 997091
Number of successful extensions: 7524
Number of sequences better than 1.0e-05: 10
Number of HSP's gapped: 7247
Number of HSP's successfully gapped: 10
Length of query: 316
Length of database: 18,297,164
Length adjustment: 102
Effective length of query: 214
Effective length of database: 14,934,836
Effective search space: 3196054904
Effective search space used: 3196054904
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-004176
(950 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001170838.1| alpha-(1,3)-fucosyltransferase isoform a [Mu... 331 4e-91
Alignment gi|NP_001170837.1| alpha-(1,3)-fucosyltransferase isoform b [Mu... 331 4e-91
Alignment gi|NP_038552.1| alpha-(1,3)-fucosyltransferase isoform a [Mus m... 331 4e-91
Alignment gi|NP_034372.1| alpha-(1,3)-fucosyltransferase [Mus musculus]. 185 5e-47
Alignment gi|NP_034373.1| alpha-(1,3)-fucosyltransferase [Mus musculus]. 154 1e-37
>ref|NP_001170838.1| alpha-(1,3)-fucosyltransferase isoform a [Mus musculus].
Length = 342
Score = 331 bits (849), Expect = 4e-91
Identities = 156/228 (68%), Positives = 172/228 (75%)
Frame = +2
Query: 254 PAPQPTITILVWHWPFATQPPELSSDTCARYGVVRCRLTTDRSLLASADAVVFHHRELXX 433
P PQ T+TIL+WHWPF +PPEL DTC RYG+ CRL+ +RSLLASADAVVFHHREL
Sbjct: 41 PVPQSTLTILIWHWPFTNRPPELPGDTCTRYGMASCRLSANRSLLASADAVVFHHRELQT 100
Query: 434 XXXXXXXXXXXXGQPWVWASMESPSHTRGLGRLRGIFNWVLSYRRDSDIFVPYGCLEPRE 613
GQPWVWASMESPS+T GL R RGIFNWVLSYRRDSDIFVPYG LEP
Sbjct: 101 RQSLLPLDQRPHGQPWVWASMESPSNTHGLHRFRGIFNWVLSYRRDSDIFVPYGRLEPLS 160
Query: 614 GTAPPLPAKSGVAVWVVSNFXXXXXXXXXXXXXXPHLPVDVFGRASRQPLCADCLLPTVA 793
G PLPAKS +A WV+SNF PHL VDVFGRAS +PLCA+CLLPT+A
Sbjct: 161 GPTSPLPAKSRMAAWVISNFQERQQRAKLYRQLAPHLQVDVFGRASGRPLCANCLLPTLA 220
Query: 794 QYLFYLSFENSQHRDYITEKFWQNALAAGTLPVVLGPPRATYEAFARP 937
+Y FYL+FENSQHRDYITEKFW+NALAAG +PV LGPPRATYEAF P
Sbjct: 221 RYRFYLAFENSQHRDYITEKFWRNALAAGAVPVALGPPRATYEAFVPP 268
>ref|NP_001170837.1| alpha-(1,3)-fucosyltransferase isoform b [Mus musculus].
Length = 389
Score = 331 bits (849), Expect = 4e-91
Identities = 156/228 (68%), Positives = 172/228 (75%)
Frame = +2
Query: 254 PAPQPTITILVWHWPFATQPPELSSDTCARYGVVRCRLTTDRSLLASADAVVFHHRELXX 433
P PQ T+TIL+WHWPF +PPEL DTC RYG+ CRL+ +RSLLASADAVVFHHREL
Sbjct: 88 PVPQSTLTILIWHWPFTNRPPELPGDTCTRYGMASCRLSANRSLLASADAVVFHHRELQT 147
Query: 434 XXXXXXXXXXXXGQPWVWASMESPSHTRGLGRLRGIFNWVLSYRRDSDIFVPYGCLEPRE 613
GQPWVWASMESPS+T GL R RGIFNWVLSYRRDSDIFVPYG LEP
Sbjct: 148 RQSLLPLDQRPHGQPWVWASMESPSNTHGLHRFRGIFNWVLSYRRDSDIFVPYGRLEPLS 207
Query: 614 GTAPPLPAKSGVAVWVVSNFXXXXXXXXXXXXXXPHLPVDVFGRASRQPLCADCLLPTVA 793
G PLPAKS +A WV+SNF PHL VDVFGRAS +PLCA+CLLPT+A
Sbjct: 208 GPTSPLPAKSRMAAWVISNFQERQQRAKLYRQLAPHLQVDVFGRASGRPLCANCLLPTLA 267
Query: 794 QYLFYLSFENSQHRDYITEKFWQNALAAGTLPVVLGPPRATYEAFARP 937
+Y FYL+FENSQHRDYITEKFW+NALAAG +PV LGPPRATYEAF P
Sbjct: 268 RYRFYLAFENSQHRDYITEKFWRNALAAGAVPVALGPPRATYEAFVPP 315
>ref|NP_038552.1| alpha-(1,3)-fucosyltransferase isoform a [Mus musculus].
Length = 342
Score = 331 bits (849), Expect = 4e-91
Identities = 156/228 (68%), Positives = 172/228 (75%)
Frame = +2
Query: 254 PAPQPTITILVWHWPFATQPPELSSDTCARYGVVRCRLTTDRSLLASADAVVFHHRELXX 433
P PQ T+TIL+WHWPF +PPEL DTC RYG+ CRL+ +RSLLASADAVVFHHREL
Sbjct: 41 PVPQSTLTILIWHWPFTNRPPELPGDTCTRYGMASCRLSANRSLLASADAVVFHHRELQT 100
Query: 434 XXXXXXXXXXXXGQPWVWASMESPSHTRGLGRLRGIFNWVLSYRRDSDIFVPYGCLEPRE 613
GQPWVWASMESPS+T GL R RGIFNWVLSYRRDSDIFVPYG LEP
Sbjct: 101 RQSLLPLDQRPHGQPWVWASMESPSNTHGLHRFRGIFNWVLSYRRDSDIFVPYGRLEPLS 160
Query: 614 GTAPPLPAKSGVAVWVVSNFXXXXXXXXXXXXXXPHLPVDVFGRASRQPLCADCLLPTVA 793
G PLPAKS +A WV+SNF PHL VDVFGRAS +PLCA+CLLPT+A
Sbjct: 161 GPTSPLPAKSRMAAWVISNFQERQQRAKLYRQLAPHLQVDVFGRASGRPLCANCLLPTLA 220
Query: 794 QYLFYLSFENSQHRDYITEKFWQNALAAGTLPVVLGPPRATYEAFARP 937
+Y FYL+FENSQHRDYITEKFW+NALAAG +PV LGPPRATYEAF P
Sbjct: 221 RYRFYLAFENSQHRDYITEKFWRNALAAGAVPVALGPPRATYEAFVPP 268
>ref|NP_034372.1| alpha-(1,3)-fucosyltransferase [Mus musculus].
Length = 433
Score = 185 bits (469), Expect = 5e-47
Identities = 111/270 (41%), Positives = 135/270 (50%), Gaps = 45/270 (16%)
Frame = +2
Query: 254 PAPQPTITILVWHWPFATQP--PELSSDTCARYGVVRCRLTTDRSLLASADAVVFHHREL 427
PAPQ + +L+W PF + P+ D R+ + CRL TDR+ A AV+FHHR+L
Sbjct: 84 PAPQRLVGVLLWWEPFRGRGGYPKSPPDCSLRFNISGCRLLTDRAAYGEAQAVLFHHRDL 143
Query: 428 XXXXXXXXXXXXXX----------------------------------GQPWVWASMESP 505
GQ WVW + ESP
Sbjct: 144 VKELHDWPPPWGARERTDKALVLRVFDDQEGAVTLTGKALETVGSRPPGQRWVWMNFESP 203
Query: 506 SHTRGL-GRLRGIFNWVLSYRRDSDIFVPYGCLEPRE-------GTAPPLPAKSGVAVWV 661
SHT GL G + +FNW LSYR DSD+FVPYG L R G P L K G+ WV
Sbjct: 204 SHTPGLRGLAKDLFNWTLSYRTDSDVFVPYGFLYSRSDPTEQPSGLGPQLARKRGLVAWV 263
Query: 662 VSNFXXXXXXXXXXXXXXPHLPVDVFGRASR-QPLCADCLLPTVAQYLFYLSFENSQHRD 838
VSN+ H+ VDVFGR +P+ A LL TVA+Y FYL+FENS+H D
Sbjct: 264 VSNWNEHQARVRYYHQLSRHVSVDVFGRTGPGRPVPAIGLLHTVARYKFYLAFENSRHVD 323
Query: 839 YITEKFWQNALAAGTLPVVLGPPRATYEAF 928
YITEK W+NA AG +PVVLGP RA YE F
Sbjct: 324 YITEKLWRNAFLAGAVPVVLGPDRANYERF 353
>ref|NP_034373.1| alpha-(1,3)-fucosyltransferase [Mus musculus].
Length = 359
Score = 154 bits (389), Expect = 1e-37
Identities = 90/221 (40%), Positives = 123/221 (55%), Gaps = 3/221 (1%)
Frame = +2
Query: 275 TILVWHWPFATQPPELSSDTCARYGVVRCRLTTDRSLLASADAVVFHHRELXXXXXXXXX 454
TILVW WPF Q +L+S A + + C LTTDRSL + AV+ HHR++
Sbjct: 65 TILVWVWPFG-QTFDLTSCQ-AMFNIQGCHLTTDRSLYNKSHAVLIHHRDISWDLTNLPQ 122
Query: 455 XXXXXGQPWVWASMESPSHTRGLGRLRGIFNWVLSYRRDSDIFVPYGCLEPREGTAP--- 625
Q W+W ++ESP+HT + +FN L+YRRDSDI VPYG L T P
Sbjct: 123 QARPPFQKWIWMNLESPTHTPQKSGIEHLFNLTLTYRRDSDIQVPYGFL--TVSTNPFVF 180
Query: 626 PLPAKSGVAVWVVSNFXXXXXXXXXXXXXXPHLPVDVFGRASRQPLCADCLLPTVAQYLF 805
+P+K + WVVSN+ + + +G+A + + L+PT++ F
Sbjct: 181 EVPSKEKLVCWVVSNWNPEHARVKYYNELSKSIEIHTYGQAFGEYVNDKNLIPTISTCKF 240
Query: 806 YLSFENSQHRDYITEKFWQNALAAGTLPVVLGPPRATYEAF 928
YLSFENS H+DYITEK + NA AG++PVVLGP R YE +
Sbjct: 241 YLSFENSIHKDYITEKLY-NAFLAGSVPVVLGPSRENYENY 280
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 28,757,486
Number of extensions: 819078
Number of successful extensions: 5828
Number of sequences better than 1.0e-05: 5
Number of HSP's gapped: 5595
Number of HSP's successfully gapped: 6
Length of query: 316
Length of database: 15,617,559
Length adjustment: 101
Effective length of query: 215
Effective length of database: 12,583,923
Effective search space: 2705543445
Effective search space used: 2705543445
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-004176
(950 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_003129818.1| PREDICTED: LOW QUALITY PROTEIN: alpha-(1,3)-... 185 4e-47
Alignment gi|XP_003123142.1| PREDICTED: galactoside 3(4)-L-fucosyltransfe... 183 1e-46
Alignment gi|XP_003353312.1| PREDICTED: alpha-(1,3)-fucosyltransferase-li... 153 1e-37
>ref|XP_003129818.1| PREDICTED: LOW QUALITY PROTEIN: alpha-(1,3)-fucosyltransferase-like
[Sus scrofa].
Length = 663
Score = 185 bits (469), Expect = 4e-47
Identities = 113/272 (41%), Positives = 136/272 (50%), Gaps = 48/272 (17%)
Frame = +2
Query: 257 APQPTITILVWHWPF-----ATQPPELSSDTCARYGVVRCRLTTDRSLLASADAVVFHHR 421
AP +++L+W PF +T+P S D R+ + CRL TDR+ A AV+FHHR
Sbjct: 315 APPRPVSVLLWWEPFGGRHISTRP---SPDCRLRFNISGCRLLTDRAAYGEAQAVLFHHR 371
Query: 422 ELXXXXXXXXXXXXXX----------------------------------GQPWVWASME 499
+L GQ WVW + E
Sbjct: 372 DLVKGPPDWPPPWGVQVRPAEEQQVLVLDDEEEPVAAAAEALAARGPRPPGQRWVWMNFE 431
Query: 500 SPSHTRGLGRLRG-IFNWVLSYRRDSDIFVPYGCLEPRE-------GTAPPLPAKSGVAV 655
SPSH+ GL L +FNW LSYR DSDIFVPYG L PR G PPL K +
Sbjct: 432 SPSHSPGLRSLESNLFNWTLSYRADSDIFVPYGYLYPRTHPSEEPPGLVPPLARKQRLVA 491
Query: 656 WVVSNFXXXXXXXXXXXXXXPHLPVDVFGRASR-QPLCADCLLPTVAQYLFYLSFENSQH 832
WVVSN+ H+PVD+FG+ QPL LL TVA+Y FYL+FENSQH
Sbjct: 492 WVVSNWDESQARVRYYRQLSQHVPVDLFGKGGPGQPLPEVGLLHTVARYKFYLAFENSQH 551
Query: 833 RDYITEKFWQNALAAGTLPVVLGPPRATYEAF 928
DYITEK W+NA AG +PVVLGP RA YE F
Sbjct: 552 LDYITEKLWRNAFLAGAVPVVLGPDRANYERF 583
>ref|XP_003123142.1| PREDICTED: galactoside 3(4)-L-fucosyltransferase-like [Sus scrofa].
Length = 361
Score = 183 bits (465), Expect = 1e-46
Identities = 104/233 (44%), Positives = 131/233 (56%), Gaps = 5/233 (2%)
Frame = +2
Query: 254 PAPQPTITILVWHWPFATQPPELSSDTCARYGVVRCRLTTDRSLLASADAVVFHHRELXX 433
P+ +P + +L+W WPF + +S + R G C+LT +R ADAV+ HHRE+
Sbjct: 57 PSSRPPLLLLLWTWPFHVRVA-VSRCSELRPGTADCQLTDNRGEYPRADAVLVHHREVSS 115
Query: 434 XXXXXXXXXXXX-GQPWVWASMESPSHTRGLGRLRGIFNWVLSYRRDSDIFVPYGCLEPR 610
GQ WVW SMESPSH L L G FN +SYRRDSDIF+PYG LEP
Sbjct: 116 HPQRQLPPSPRPPGQRWVWFSMESPSHCPQLKALDGYFNLTMSYRRDSDIFMPYGWLEPW 175
Query: 611 EGTAPP----LPAKSGVAVWVVSNFXXXXXXXXXXXXXXPHLPVDVFGRASRQPLCADCL 778
G + AK+ + WVVSN+ HL VDV+GR S +PL + +
Sbjct: 176 PGQPVDVQLNISAKNKLVAWVVSNWREDSVRVRYYRQLQAHLQVDVYGR-SHKPLPSSAM 234
Query: 779 LPTVAQYLFYLSFENSQHRDYITEKFWQNALAAGTLPVVLGPPRATYEAFARP 937
++QY FYL+FENS H DYITEK W+NAL A +PVVLGP R YE F P
Sbjct: 235 TTQLSQYKFYLAFENSLHTDYITEKLWRNALLAWAVPVVLGPSRRNYEQFLPP 287
>ref|XP_003353312.1| PREDICTED: alpha-(1,3)-fucosyltransferase-like [Sus scrofa].
Length = 359
Score = 153 bits (387), Expect = 1e-37
Identities = 89/221 (40%), Positives = 123/221 (55%), Gaps = 3/221 (1%)
Frame = +2
Query: 275 TILVWHWPFATQPPELSSDTCARYGVVRCRLTTDRSLLASADAVVFHHRELXXXXXXXXX 454
TIL+W WPF Q +L+S A + + C LTTDRSL + AV+ HHR++
Sbjct: 65 TILIWVWPFG-QTFDLTSCQ-AMFNIQGCHLTTDRSLYNRSHAVLIHHRDISWDLTNLPQ 122
Query: 455 XXXXXGQPWVWASMESPSHTRGLGRLRGIFNWVLSYRRDSDIFVPYGCLEPREGTAP--- 625
Q W+W ++ESP+HT + +FN L+YRRDSDI VPYG L T P
Sbjct: 123 QARPPFQKWIWMNLESPTHTPQKSGIEHLFNLTLTYRRDSDIQVPYGFL--TVSTNPFVF 180
Query: 626 PLPAKSGVAVWVVSNFXXXXXXXXXXXXXXPHLPVDVFGRASRQPLCADCLLPTVAQYLF 805
+P+K + WVVSN+ + + +G+A + + L+PT++ F
Sbjct: 181 EVPSKEKLVCWVVSNWNPEHARVKYYNELSKSIEIHTYGQAFGEYVNDKNLIPTISTCKF 240
Query: 806 YLSFENSQHRDYITEKFWQNALAAGTLPVVLGPPRATYEAF 928
YLSFENS H+DYITEK + NA AG++PVVLGP R YE +
Sbjct: 241 YLSFENSIHKDYITEKLY-NAFLAGSVPVVLGPSRENYENY 280
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 21,957,940
Number of extensions: 653260
Number of successful extensions: 5159
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 4947
Number of HSP's successfully gapped: 3
Length of query: 316
Length of database: 11,343,932
Length adjustment: 99
Effective length of query: 217
Effective length of database: 8,879,129
Effective search space: 1926770993
Effective search space used: 1926770993
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 33 (17.3 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-004176
(950 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
***** No hits found ******
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 20,892,679
Number of extensions: 1186
Number of successful extensions: 1186
Number of sequences better than 1.0e-05: 0
Number of HSP's gapped: 1186
Number of HSP's successfully gapped: 0
Length of query: 950
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 929
Effective length of database: 2,808,413,156
Effective search space: 2609015821924
Effective search space used: 2609015821924
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 29 (58.0 bits)