Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-004185
(1079 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001029207.1| hypoxanthine-guanine phosphoribosyltransfera... 300 1e-81
Alignment gi|XP_002686487.1| PREDICTED: hypoxanthine phosphoribosyltransf... 292 4e-79
Alignment gi|XP_002686486.1| PREDICTED: hypoxanthine phosphoribosyltransf... 292 4e-79
Alignment gi|XP_587503.2| PREDICTED: hypoxanthine phosphoribosyltransfera... 292 4e-79
Alignment gi|XP_002704047.1| PREDICTED: hypoxanthine phosphoribosyltransf... 292 4e-79
Alignment gi|XP_002690980.1| PREDICTED: hypoxanthine phosphoribosyltransf... 268 8e-72
Alignment gi|XP_869469.1| PREDICTED: hypoxanthine phosphoribosyltransfera... 268 8e-72
>ref|NP_001029207.1| hypoxanthine-guanine phosphoribosyltransferase [Bos taurus].
Length = 218
Score = 300 bits (769), Expect = 1e-81
Identities = 140/210 (66%), Positives = 179/210 (85%)
Frame = +2
Query: 74 VVILDNWPGYDLNLFTYPQHYYGDLEYVLIPHGIIVDRIERLAKDIMKDIGYCDIMVLCV 253
VVI D+ PGYDLNLF P HY DLE V IPHG+I+DR ERLA+D+MK++G I+ LCV
Sbjct: 8 VVISDDEPGYDLNLFCIPNHYAEDLEKVFIPHGLIMDRTERLARDVMKEMGGHHIVALCV 67
Query: 254 LKGGYKFCADLVEHLKSISRNSDRFVSMKVDFIRLKSYRNDQSMDEMQIIGGEDLSTLAG 433
LKGGYKF ADL++++K+++RNSD+ + M VDFIRLKSY NDQS ++++IGG+DLSTL G
Sbjct: 68 LKGGYKFFADLLDYIKALNRNSDKSIPMTVDFIRLKSYCNDQSTGDIKVIGGDDLSTLTG 127
Query: 434 KNVLIVEDVVGTGRTMKALLSSIEKYKPNMIKVASLLVKRTPRSDGFRPDYAGFEIPNLF 613
KNVLIVED++ TG+TM+ LL+ ++K+KP M+KVASLL+KRTPRS G++PD+ GFEIP+ F
Sbjct: 128 KNVLIVEDIIDTGKTMQTLLALVKKHKPKMVKVASLLMKRTPRSVGYKPDFVGFEIPDKF 187
Query: 614 VVGYALDYNEYFRDLNHICVINEHGKEKYR 703
VVGYALDYNEYFRDLNH+CVI+E GK KY+
Sbjct: 188 VVGYALDYNEYFRDLNHVCVISETGKAKYK 217
>ref|XP_002686487.1| PREDICTED: hypoxanthine phosphoribosyltransferase 1-like isoform 2
[Bos taurus].
Length = 218
Score = 292 bits (747), Expect = 4e-79
Identities = 138/210 (65%), Positives = 175/210 (83%)
Frame = +2
Query: 74 VVILDNWPGYDLNLFTYPQHYYGDLEYVLIPHGIIVDRIERLAKDIMKDIGYCDIMVLCV 253
+VI D+ PGYDL+LF P HY DLE V IPHG+I+DR ERLA+D+M +G I+ LCV
Sbjct: 8 IVISDDEPGYDLDLFCIPNHYAEDLEKVFIPHGLIMDRTERLARDVMHVMGGHHIVALCV 67
Query: 254 LKGGYKFCADLVEHLKSISRNSDRFVSMKVDFIRLKSYRNDQSMDEMQIIGGEDLSTLAG 433
LKGGYKF ADL++++K ++RNSDR + M VDFIRLKSY NDQS ++++IGG+DLSTL G
Sbjct: 68 LKGGYKFFADLLDYIKVLNRNSDRSIPMTVDFIRLKSYYNDQSTGDIKVIGGDDLSTLTG 127
Query: 434 KNVLIVEDVVGTGRTMKALLSSIEKYKPNMIKVASLLVKRTPRSDGFRPDYAGFEIPNLF 613
KNVLIVED++ TG+TM+ALLS ++++ P M+KVASLLVKRTPRS +RPD+ GFEIP+ F
Sbjct: 128 KNVLIVEDIIDTGKTMQALLSLVKRHNPKMVKVASLLVKRTPRSVSYRPDFVGFEIPDKF 187
Query: 614 VVGYALDYNEYFRDLNHICVINEHGKEKYR 703
VVGYALDYNE+FRDLNH+CVI+E GK KY+
Sbjct: 188 VVGYALDYNEHFRDLNHVCVISETGKAKYK 217
>ref|XP_002686486.1| PREDICTED: hypoxanthine phosphoribosyltransferase 1-like isoform 1
[Bos taurus].
Length = 218
Score = 292 bits (747), Expect = 4e-79
Identities = 138/210 (65%), Positives = 175/210 (83%)
Frame = +2
Query: 74 VVILDNWPGYDLNLFTYPQHYYGDLEYVLIPHGIIVDRIERLAKDIMKDIGYCDIMVLCV 253
+VI D+ PGYDL+LF P HY DLE V IPHG+I+DR ERLA+D+M +G I+ LCV
Sbjct: 8 IVISDDEPGYDLDLFCIPNHYAEDLEKVFIPHGLIMDRTERLARDVMHVMGGHHIVALCV 67
Query: 254 LKGGYKFCADLVEHLKSISRNSDRFVSMKVDFIRLKSYRNDQSMDEMQIIGGEDLSTLAG 433
LKGGYKF ADL++++K ++RNSDR + M VDFIRLKSY NDQS ++++IGG+DLSTL G
Sbjct: 68 LKGGYKFFADLLDYIKVLNRNSDRSIPMTVDFIRLKSYYNDQSTGDIKVIGGDDLSTLTG 127
Query: 434 KNVLIVEDVVGTGRTMKALLSSIEKYKPNMIKVASLLVKRTPRSDGFRPDYAGFEIPNLF 613
KNVLIVED++ TG+TM+ALLS ++++ P M+KVASLLVKRTPRS +RPD+ GFEIP+ F
Sbjct: 128 KNVLIVEDIIDTGKTMQALLSLVKRHNPKMVKVASLLVKRTPRSVSYRPDFVGFEIPDKF 187
Query: 614 VVGYALDYNEYFRDLNHICVINEHGKEKYR 703
VVGYALDYNE+FRDLNH+CVI+E GK KY+
Sbjct: 188 VVGYALDYNEHFRDLNHVCVISETGKAKYK 217
>ref|XP_587503.2| PREDICTED: hypoxanthine phosphoribosyltransferase 1-like isoform 2
[Bos taurus].
Length = 218
Score = 292 bits (747), Expect = 4e-79
Identities = 138/210 (65%), Positives = 175/210 (83%)
Frame = +2
Query: 74 VVILDNWPGYDLNLFTYPQHYYGDLEYVLIPHGIIVDRIERLAKDIMKDIGYCDIMVLCV 253
+VI D+ PGYDL+LF P HY DLE V IPHG+I+DR ERLA+D+M +G I+ LCV
Sbjct: 8 IVISDDEPGYDLDLFCIPNHYAEDLEKVFIPHGLIMDRTERLARDVMHVMGGHHIVALCV 67
Query: 254 LKGGYKFCADLVEHLKSISRNSDRFVSMKVDFIRLKSYRNDQSMDEMQIIGGEDLSTLAG 433
LKGGYKF ADL++++K ++RNSDR + M VDFIRLKSY NDQS ++++IGG+DLSTL G
Sbjct: 68 LKGGYKFFADLLDYIKVLNRNSDRSIPMTVDFIRLKSYYNDQSTGDIKVIGGDDLSTLTG 127
Query: 434 KNVLIVEDVVGTGRTMKALLSSIEKYKPNMIKVASLLVKRTPRSDGFRPDYAGFEIPNLF 613
KNVLIVED++ TG+TM+ALLS ++++ P M+KVASLLVKRTPRS +RPD+ GFEIP+ F
Sbjct: 128 KNVLIVEDIIDTGKTMQALLSLVKRHNPKMVKVASLLVKRTPRSVSYRPDFVGFEIPDKF 187
Query: 614 VVGYALDYNEYFRDLNHICVINEHGKEKYR 703
VVGYALDYNE+FRDLNH+CVI+E GK KY+
Sbjct: 188 VVGYALDYNEHFRDLNHVCVISETGKAKYK 217
>ref|XP_002704047.1| PREDICTED: hypoxanthine phosphoribosyltransferase 1-like [Bos
taurus].
Length = 218
Score = 292 bits (747), Expect = 4e-79
Identities = 138/210 (65%), Positives = 175/210 (83%)
Frame = +2
Query: 74 VVILDNWPGYDLNLFTYPQHYYGDLEYVLIPHGIIVDRIERLAKDIMKDIGYCDIMVLCV 253
+VI D+ PGYDL+LF P HY DLE V IPHG+I+DR ERLA+D+M +G I+ LCV
Sbjct: 8 IVISDDEPGYDLDLFCIPNHYAEDLEKVFIPHGLIMDRTERLARDVMHVMGGHHIVALCV 67
Query: 254 LKGGYKFCADLVEHLKSISRNSDRFVSMKVDFIRLKSYRNDQSMDEMQIIGGEDLSTLAG 433
LKGGYKF ADL++++K ++RNSDR + M VDFIRLKSY NDQS ++++IGG+DLSTL G
Sbjct: 68 LKGGYKFFADLLDYIKVLNRNSDRSIPMTVDFIRLKSYYNDQSTGDIKVIGGDDLSTLTG 127
Query: 434 KNVLIVEDVVGTGRTMKALLSSIEKYKPNMIKVASLLVKRTPRSDGFRPDYAGFEIPNLF 613
KNVLIVED++ TG+TM+ALLS ++++ P M+KVASLLVKRTPRS +RPD+ GFEIP+ F
Sbjct: 128 KNVLIVEDIIDTGKTMQALLSLVKRHNPKMVKVASLLVKRTPRSVSYRPDFVGFEIPDKF 187
Query: 614 VVGYALDYNEYFRDLNHICVINEHGKEKYR 703
VVGYALDYNE+FRDLNH+CVI+E GK KY+
Sbjct: 188 VVGYALDYNEHFRDLNHVCVISETGKAKYK 217
>ref|XP_002690980.1| PREDICTED: hypoxanthine phosphoribosyltransferase 1-like [Bos
taurus].
Length = 211
Score = 268 bits (684), Expect = 8e-72
Identities = 132/210 (62%), Positives = 164/210 (78%)
Frame = +2
Query: 74 VVILDNWPGYDLNLFTYPQHYYGDLEYVLIPHGIIVDRIERLAKDIMKDIGYCDIMVLCV 253
VV ++ PGYDL+LF HY DL+ V +PHG+I+DR ERLA+D+MK++G ++ LCV
Sbjct: 8 VVNSNDEPGYDLDLFCKTNHYAEDLQKVFVPHGLIMDRTERLARDVMKEMGGHHLVALCV 67
Query: 254 LKGGYKFCADLVEHLKSISRNSDRFVSMKVDFIRLKSYRNDQSMDEMQIIGGEDLSTLAG 433
LKGGYKF ADL +RNSD+ + M VDFIRLKSY NDQS E+++IGG+DLSTL
Sbjct: 68 LKGGYKFFADL-------NRNSDKSIPMTVDFIRLKSYCNDQSTGEIKVIGGDDLSTLTE 120
Query: 434 KNVLIVEDVVGTGRTMKALLSSIEKYKPNMIKVASLLVKRTPRSDGFRPDYAGFEIPNLF 613
KNVLIVED+ TG+TM+ LLS ++K+KP M+K ASLLVKRTPRS +RPD+ GFEIP+ F
Sbjct: 121 KNVLIVEDITDTGKTMQTLLSLVKKHKPKMVKAASLLVKRTPRSVRYRPDFVGFEIPDKF 180
Query: 614 VVGYALDYNEYFRDLNHICVINEHGKEKYR 703
VVGYALDYNEYFRDLNH+CVI E K KY+
Sbjct: 181 VVGYALDYNEYFRDLNHVCVITETRKAKYK 210
>ref|XP_869469.1| PREDICTED: hypoxanthine phosphoribosyltransferase 1-like [Bos
taurus].
Length = 211
Score = 268 bits (684), Expect = 8e-72
Identities = 132/210 (62%), Positives = 164/210 (78%)
Frame = +2
Query: 74 VVILDNWPGYDLNLFTYPQHYYGDLEYVLIPHGIIVDRIERLAKDIMKDIGYCDIMVLCV 253
VV ++ PGYDL+LF HY DL+ V +PHG+I+DR ERLA+D+MK++G ++ LCV
Sbjct: 8 VVNSNDEPGYDLDLFCKTNHYAEDLQKVFVPHGLIMDRTERLARDVMKEMGGHHLVALCV 67
Query: 254 LKGGYKFCADLVEHLKSISRNSDRFVSMKVDFIRLKSYRNDQSMDEMQIIGGEDLSTLAG 433
LKGGYKF ADL +RNSD+ + M VDFIRLKSY NDQS E+++IGG+DLSTL
Sbjct: 68 LKGGYKFFADL-------NRNSDKSIPMTVDFIRLKSYCNDQSTGEIKVIGGDDLSTLTE 120
Query: 434 KNVLIVEDVVGTGRTMKALLSSIEKYKPNMIKVASLLVKRTPRSDGFRPDYAGFEIPNLF 613
KNVLIVED+ TG+TM+ LLS ++K+KP M+K ASLLVKRTPRS +RPD+ GFEIP+ F
Sbjct: 121 KNVLIVEDITDTGKTMQTLLSLVKKHKPKMVKAASLLVKRTPRSVRYRPDFVGFEIPDKF 180
Query: 614 VVGYALDYNEYFRDLNHICVINEHGKEKYR 703
VVGYALDYNEYFRDLNH+CVI E K KY+
Sbjct: 181 VVGYALDYNEYFRDLNHVCVITETRKAKYK 210
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 37,756,220
Number of extensions: 916779
Number of successful extensions: 2096
Number of sequences better than 1.0e-05: 7
Number of HSP's gapped: 2094
Number of HSP's successfully gapped: 7
Length of query: 359
Length of database: 17,681,374
Length adjustment: 103
Effective length of query: 256
Effective length of database: 14,273,310
Effective search space: 3653967360
Effective search space used: 3653967360
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-004185
(1079 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_544231.2| PREDICTED: similar to phosphoribosyl transferas... 409 e-114
Alignment gi|NP_001003357.1| hypoxanthine-guanine phosphoribosyltransfera... 298 6e-81
>ref|XP_544231.2| PREDICTED: similar to phosphoribosyl transferase domain containing
1 [Canis familiaris].
Length = 256
Score = 409 bits (1052), Expect = e-114
Identities = 199/223 (89%), Positives = 211/223 (94%)
Frame = +2
Query: 38 GSSEEAPDYGRGVVILDNWPGYDLNLFTYPQHYYGDLEYVLIPHGIIVDRIERLAKDIMK 217
G S+ P +G I+D+WPGYDL+LFTYPQHYYGDL+YVLIPHGIIVDRIERLAKDI+K
Sbjct: 36 GKSKGGPYWGGQ--IMDSWPGYDLDLFTYPQHYYGDLDYVLIPHGIIVDRIERLAKDILK 93
Query: 218 DIGYCDIMVLCVLKGGYKFCADLVEHLKSISRNSDRFVSMKVDFIRLKSYRNDQSMDEMQ 397
DIGYCDI++LCVLKGGYKFCADLVEHLK+ISRNSDRFVSMKVDFIRLKSYRNDQSM EMQ
Sbjct: 94 DIGYCDIVILCVLKGGYKFCADLVEHLKNISRNSDRFVSMKVDFIRLKSYRNDQSMGEMQ 153
Query: 398 IIGGEDLSTLAGKNVLIVEDVVGTGRTMKALLSSIEKYKPNMIKVASLLVKRTPRSDGFR 577
IIGG DLSTLAGKNVLIVEDVVGTG+TMK LLSSI+KYKPNMIKVASLLVKRTPRSDGFR
Sbjct: 154 IIGGHDLSTLAGKNVLIVEDVVGTGKTMKVLLSSIKKYKPNMIKVASLLVKRTPRSDGFR 213
Query: 578 PDYAGFEIPNLFVVGYALDYNEYFRDLNHICVINEHGKEKYRV 706
PDY GFEIPNLFVVGYALDYNEYFRDLNHICVINEHGKEKYRV
Sbjct: 214 PDYVGFEIPNLFVVGYALDYNEYFRDLNHICVINEHGKEKYRV 256
>ref|NP_001003357.1| hypoxanthine-guanine phosphoribosyltransferase [Canis lupus
familiaris].
Length = 218
Score = 298 bits (763), Expect = 6e-81
Identities = 140/211 (66%), Positives = 178/211 (84%)
Frame = +2
Query: 71 GVVILDNWPGYDLNLFTYPQHYYGDLEYVLIPHGIIVDRIERLAKDIMKDIGYCDIMVLC 250
GVVI D+ PGYDL+LF P HY DLE V IPHG+I+DR ERLA+D+MK++G I+ LC
Sbjct: 7 GVVISDDEPGYDLDLFCIPHHYAEDLEKVFIPHGLIMDRTERLARDVMKEMGGHHIVALC 66
Query: 251 VLKGGYKFCADLVEHLKSISRNSDRFVSMKVDFIRLKSYRNDQSMDEMQIIGGEDLSTLA 430
VLKGGYKF ADL++++K+++RNSD + M VDFIRLKSY NDQS ++++IGG+DLSTL
Sbjct: 67 VLKGGYKFFADLLDYIKALNRNSDGSIPMTVDFIRLKSYCNDQSTGDIKVIGGDDLSTLT 126
Query: 431 GKNVLIVEDVVGTGRTMKALLSSIEKYKPNMIKVASLLVKRTPRSDGFRPDYAGFEIPNL 610
GKNVLIVED++ TG+TM+ LLS ++++ P M+KVASLLVKRTPRS G++PD+ GFEIP+
Sbjct: 127 GKNVLIVEDIIDTGKTMQTLLSLVKEHNPKMVKVASLLVKRTPRSVGYKPDFVGFEIPDK 186
Query: 611 FVVGYALDYNEYFRDLNHICVINEHGKEKYR 703
FVVGYALDYNEYFRDLNH+CVI+E GK KY+
Sbjct: 187 FVVGYALDYNEYFRDLNHVCVISETGKAKYK 217
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 39,541,409
Number of extensions: 943983
Number of successful extensions: 1977
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 1977
Number of HSP's successfully gapped: 2
Length of query: 359
Length of database: 18,874,504
Length adjustment: 104
Effective length of query: 255
Effective length of database: 15,407,560
Effective search space: 3928927800
Effective search space used: 3928927800
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-004185
(1079 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_064585.1| phosphoribosyltransferase domain-containing pro... 444 e-125
Alignment gi|NP_000185.1| hypoxanthine-guanine phosphoribosyltransferase ... 302 3e-82
>ref|NP_064585.1| phosphoribosyltransferase domain-containing protein 1 [Homo
sapiens].
Length = 225
Score = 444 bits (1142), Expect = e-125
Identities = 217/225 (96%), Positives = 222/225 (98%)
Frame = +2
Query: 32 MAGSSEEAPDYGRGVVILDNWPGYDLNLFTYPQHYYGDLEYVLIPHGIIVDRIERLAKDI 211
MAGSSEEAPDYGRGVVI+D+WPGYDLNLFTYPQHYYGDLEYVLIPHGIIVDRIERLAKDI
Sbjct: 1 MAGSSEEAPDYGRGVVIMDDWPGYDLNLFTYPQHYYGDLEYVLIPHGIIVDRIERLAKDI 60
Query: 212 MKDIGYCDIMVLCVLKGGYKFCADLVEHLKSISRNSDRFVSMKVDFIRLKSYRNDQSMDE 391
MKDIGY DIMVLCVLKGGYKFCADLVEHLK+ISRNSDRFVSMKVDFIRLKSYRNDQSM E
Sbjct: 61 MKDIGYSDIMVLCVLKGGYKFCADLVEHLKNISRNSDRFVSMKVDFIRLKSYRNDQSMGE 120
Query: 392 MQIIGGEDLSTLAGKNVLIVEDVVGTGRTMKALLSSIEKYKPNMIKVASLLVKRTPRSDG 571
MQIIGG+DLSTLAGKNVLIVEDVVGTGRTMKALLS+IEKYKPNMIKVASLLVKRT RSDG
Sbjct: 121 MQIIGGDDLSTLAGKNVLIVEDVVGTGRTMKALLSNIEKYKPNMIKVASLLVKRTSRSDG 180
Query: 572 FRPDYAGFEIPNLFVVGYALDYNEYFRDLNHICVINEHGKEKYRV 706
FRPDYAGFEIPNLFVVGYALDYNEYFRDLNHICVINEHGKEKYRV
Sbjct: 181 FRPDYAGFEIPNLFVVGYALDYNEYFRDLNHICVINEHGKEKYRV 225
>ref|NP_000185.1| hypoxanthine-guanine phosphoribosyltransferase [Homo sapiens].
Length = 218
Score = 302 bits (774), Expect = 3e-82
Identities = 142/211 (67%), Positives = 178/211 (84%)
Frame = +2
Query: 71 GVVILDNWPGYDLNLFTYPQHYYGDLEYVLIPHGIIVDRIERLAKDIMKDIGYCDIMVLC 250
GVVI D+ PGYDL+LF P HY DLE V IPHG+I+DR ERLA+D+MK++G I+ LC
Sbjct: 7 GVVISDDEPGYDLDLFCIPNHYAEDLERVFIPHGLIMDRTERLARDVMKEMGGHHIVALC 66
Query: 251 VLKGGYKFCADLVEHLKSISRNSDRFVSMKVDFIRLKSYRNDQSMDEMQIIGGEDLSTLA 430
VLKGGYKF ADL++++K+++RNSDR + M VDFIRLKSY NDQS ++++IGG+DLSTL
Sbjct: 67 VLKGGYKFFADLLDYIKALNRNSDRSIPMTVDFIRLKSYCNDQSTGDIKVIGGDDLSTLT 126
Query: 431 GKNVLIVEDVVGTGRTMKALLSSIEKYKPNMIKVASLLVKRTPRSDGFRPDYAGFEIPNL 610
GKNVLIVED++ TG+TM+ LLS + +Y P M+KVASLLVKRTPRS G++PD+ GFEIP+
Sbjct: 127 GKNVLIVEDIIDTGKTMQTLLSLVRQYNPKMVKVASLLVKRTPRSVGYKPDFVGFEIPDK 186
Query: 611 FVVGYALDYNEYFRDLNHICVINEHGKEKYR 703
FVVGYALDYNEYFRDLNH+CVI+E GK KY+
Sbjct: 187 FVVGYALDYNEYFRDLNHVCVISETGKAKYK 217
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 38,890,515
Number of extensions: 945397
Number of successful extensions: 2106
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 2106
Number of HSP's successfully gapped: 2
Length of query: 359
Length of database: 18,297,164
Length adjustment: 104
Effective length of query: 255
Effective length of database: 14,868,908
Effective search space: 3791571540
Effective search space used: 3791571540
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-004185
(1079 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_038584.2| hypoxanthine-guanine phosphoribosyltransferase ... 299 2e-81
>ref|NP_038584.2| hypoxanthine-guanine phosphoribosyltransferase [Mus musculus].
Length = 218
Score = 299 bits (766), Expect = 2e-81
Identities = 142/216 (65%), Positives = 178/216 (82%)
Frame = +2
Query: 56 PDYGRGVVILDNWPGYDLNLFTYPQHYYGDLEYVLIPHGIIVDRIERLAKDIMKDIGYCD 235
P VVI D+ PGYDL+LF P HY DLE V IPHG+I+DR ERLA+D+MK++G
Sbjct: 2 PTRSPSVVISDDEPGYDLDLFCIPNHYAEDLEKVFIPHGLIMDRTERLARDVMKEMGGHH 61
Query: 236 IMVLCVLKGGYKFCADLVEHLKSISRNSDRFVSMKVDFIRLKSYRNDQSMDEMQIIGGED 415
I+ LCVLKGGYKF ADL++++K+++RNSDR + M VDFIRLKSY NDQS ++++IGG+D
Sbjct: 62 IVALCVLKGGYKFFADLLDYIKALNRNSDRSIPMTVDFIRLKSYCNDQSTGDIKVIGGDD 121
Query: 416 LSTLAGKNVLIVEDVVGTGRTMKALLSSIEKYKPNMIKVASLLVKRTPRSDGFRPDYAGF 595
LSTL GKNVLIVED++ TG+TM+ LLS +++Y P M+KVASLLVKRT RS G+RPD+ GF
Sbjct: 122 LSTLTGKNVLIVEDIIDTGKTMQTLLSLVKQYSPKMVKVASLLVKRTSRSVGYRPDFVGF 181
Query: 596 EIPNLFVVGYALDYNEYFRDLNHICVINEHGKEKYR 703
EIP+ FVVGYALDYNEYFRDLNH+CVI+E GK KY+
Sbjct: 182 EIPDKFVVGYALDYNEYFRDLNHVCVISETGKAKYK 217
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 33,308,823
Number of extensions: 806362
Number of successful extensions: 1874
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 1874
Number of HSP's successfully gapped: 1
Length of query: 359
Length of database: 15,617,559
Length adjustment: 103
Effective length of query: 256
Effective length of database: 12,523,851
Effective search space: 3206105856
Effective search space used: 3206105856
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-004185
(1079 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001027548.1| hypoxanthine-guanine phosphoribosyltransfera... 300 1e-81
Alignment gi|XP_003130814.2| PREDICTED: phosphoribosyltransferase domain-... 237 1e-62
Alignment gi|XP_003130816.1| PREDICTED: phosphoribosyltransferase domain-... 159 3e-39
>ref|NP_001027548.1| hypoxanthine-guanine phosphoribosyltransferase [Sus scrofa].
Length = 218
Score = 300 bits (767), Expect = 1e-81
Identities = 141/210 (67%), Positives = 178/210 (84%)
Frame = +2
Query: 74 VVILDNWPGYDLNLFTYPQHYYGDLEYVLIPHGIIVDRIERLAKDIMKDIGYCDIMVLCV 253
VVI D+ PGYDL+LF P HY DLE V IPHG+I+DR ERLA+D+MK++G I+ LCV
Sbjct: 8 VVISDDEPGYDLDLFCIPNHYAEDLEKVFIPHGLIMDRTERLARDVMKEMGGHHIVALCV 67
Query: 254 LKGGYKFCADLVEHLKSISRNSDRFVSMKVDFIRLKSYRNDQSMDEMQIIGGEDLSTLAG 433
LKGGYKF ADL++++K+++RNSDR + M VDFIRLKSY NDQS ++++IGG+DLSTL G
Sbjct: 68 LKGGYKFFADLLDYIKALNRNSDRSIPMTVDFIRLKSYCNDQSTGDIKVIGGDDLSTLTG 127
Query: 434 KNVLIVEDVVGTGRTMKALLSSIEKYKPNMIKVASLLVKRTPRSDGFRPDYAGFEIPNLF 613
KNVLIVED++ TG+TM+ LLS ++++ P M+KVASLLVKRTPRS G+RPD+ GFEIP+ F
Sbjct: 128 KNVLIVEDIIDTGKTMQTLLSLVKQHNPKMVKVASLLVKRTPRSVGYRPDFVGFEIPDKF 187
Query: 614 VVGYALDYNEYFRDLNHICVINEHGKEKYR 703
VVGYALDYNEYFRDLNH+CVI+E GK KY+
Sbjct: 188 VVGYALDYNEYFRDLNHVCVISETGKAKYK 217
>ref|XP_003130814.2| PREDICTED: phosphoribosyltransferase domain-containing protein
1-like [Sus scrofa].
Length = 131
Score = 237 bits (604), Expect = 1e-62
Identities = 113/113 (100%), Positives = 113/113 (100%)
Frame = +2
Query: 32 MAGSSEEAPDYGRGVVILDNWPGYDLNLFTYPQHYYGDLEYVLIPHGIIVDRIERLAKDI 211
MAGSSEEAPDYGRGVVILDNWPGYDLNLFTYPQHYYGDLEYVLIPHGIIVDRIERLAKDI
Sbjct: 1 MAGSSEEAPDYGRGVVILDNWPGYDLNLFTYPQHYYGDLEYVLIPHGIIVDRIERLAKDI 60
Query: 212 MKDIGYCDIMVLCVLKGGYKFCADLVEHLKSISRNSDRFVSMKVDFIRLKSYR 370
MKDIGYCDIMVLCVLKGGYKFCADLVEHLKSISRNSDRFVSMKVDFIRLKSYR
Sbjct: 61 MKDIGYCDIMVLCVLKGGYKFCADLVEHLKSISRNSDRFVSMKVDFIRLKSYR 113
>ref|XP_003130816.1| PREDICTED: phosphoribosyltransferase domain-containing protein
1-like [Sus scrofa].
Length = 76
Score = 159 bits (401), Expect = 3e-39
Identities = 76/76 (100%), Positives = 76/76 (100%)
Frame = +2
Query: 479 MKALLSSIEKYKPNMIKVASLLVKRTPRSDGFRPDYAGFEIPNLFVVGYALDYNEYFRDL 658
MKALLSSIEKYKPNMIKVASLLVKRTPRSDGFRPDYAGFEIPNLFVVGYALDYNEYFRDL
Sbjct: 1 MKALLSSIEKYKPNMIKVASLLVKRTPRSDGFRPDYAGFEIPNLFVVGYALDYNEYFRDL 60
Query: 659 NHICVINEHGKEKYRV 706
NHICVINEHGKEKYRV
Sbjct: 61 NHICVINEHGKEKYRV 76
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 24,232,234
Number of extensions: 583115
Number of successful extensions: 1326
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 1326
Number of HSP's successfully gapped: 3
Length of query: 359
Length of database: 11,343,932
Length adjustment: 100
Effective length of query: 259
Effective length of database: 8,854,232
Effective search space: 2293246088
Effective search space used: 2293246088
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-004185
(1079 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr10 704 0.0
>Sscrofa_Chr10
|| Length = 79102373
Score = 704 bits (355), Expect = 0.0
Identities = 402/415 (96%), Gaps = 5/415 (1%)
Strand = Plus / Plus
Query: 662 cacatatgtgtgatcaatgaacacggcaaagaaaagtatcgagtctaaagaagtaaattt 721
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 55909950 cacatatgtgtgatcaatgaacacggcaaagaaaagtatcgagtctaaagaagtaaattt 55910009
Query: 722 tcgccatcgaatcggcagataacattcctacttaacgactacactcaggaagccagcatg 781
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 55910010 tcgccatcgaatcggcagataacattcctacttaacgactacactcaggaagccagcatg 55910069
Query: 782 taaagtttgtctcccaggcatcttcactcagcaggatttaaaagaacnnnnnnntttaat 841
||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 55910070 taaagtttgtctcccaggcatcttcactcagcaggatttaaaagaacaaaaaaatttaat 55910129
Query: 842 gagcaggctttattttctgagattataactataacgtaaagagtcccaaaggttcttcag 901
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 55910130 gagcaggctttattttctgagattataactataacgtaaagagtcccaaaggttcttcag 55910189
Query: 902 gaaaagaaagcaatgcttttatttgccttgttttcaaat--aacactccaccttgtgact 959
|||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||
Sbjct: 55910190 gaaaagaaagcaatgcttttatttgccttg-tttcaaattaaacactccaccttgtgact 55910248
Query: 960 cataagtt-catctaccttcacacccctgagatatactttcttttgttttgat-aagtca 1017
|||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 55910249 cataagttccatctaccttcacacccctgagatatactttcttttgttttgataaagtca 55910308
Query: 1018 ttatgggtgaatactatacccccacctactaactcaaatagttttcacttaacta 1072
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 55910309 ttatgggtgattactatacccccacctactaactcaaatagttttcacttaacta 55910363
Score = 361 bits (182), Expect = 5e-97
Identities = 185/186 (99%)
Strand = Plus / Plus
Query: 184 cagaattgaacggctggctaaggatattatgaaagacataggctactgtgacattatggt 243
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 55808072 cagaattgaacggctggctaaggatattatgaaagacataggctactgtgacattatggt 55808131
Query: 244 cctgtgtgtgctgaaaggaggctacaagttctgtgccgacctcgtagaacaccttaagag 303
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 55808132 cctgtgtgtgctgaaaggaggctacaagttctgtgccgacctcgtagaacaccttaagag 55808191
Query: 304 catcagtcgaaattccgatagatttgtctctatgaaggtggatttcatcagactaaaaag 363
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 55808192 catcagtcgaaattctgatagatttgtctctatgaaggtggatttcatcagactaaaaag 55808251
Query: 364 ctacag 369
||||||
Sbjct: 55808252 ctacag 55808257
Score = 214 bits (108), Expect = 8e-53
Identities = 108/108 (100%)
Strand = Plus / Plus
Query: 79 gattctggacaactggccagggtatgacttgaatttgttcacatacccacagcactatta 138
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 55803598 gattctggacaactggccagggtatgacttgaatttgttcacatacccacagcactatta 55803657
Query: 139 tggagacttggaatacgtcctcatccctcatggcatcattgtagacag 186
||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 55803658 tggagacttggaatacgtcctcatccctcatggcatcattgtagacag 55803705
Score = 168 bits (85), Expect = 4e-39
Identities = 85/85 (100%)
Strand = Plus / Plus
Query: 453 aggatgttgttggaaccgggaggaccatgaaagcgttgctcagtagcatagagaaataca 512
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 55903876 aggatgttgttggaaccgggaggaccatgaaagcgttgctcagtagcatagagaaataca 55903935
Query: 513 agcccaacatgattaaggtggccag 537
|||||||||||||||||||||||||
Sbjct: 55903936 agcccaacatgattaaggtggccag 55903960
Score = 157 bits (79), Expect = 2e-35
Identities = 79/79 (100%)
Strand = Plus / Plus
Query: 1 cttctttccttcccgctttccccggagaaacatggccgggagcagtgaggaggcgccaga 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 55787927 cttctttccttcccgctttccccggagaaacatggccgggagcagtgaggaggcgccaga 55787986
Query: 61 ctacgggcgaggcgtggtg 79
|||||||||||||||||||
Sbjct: 55787987 ctacgggcgaggcgtggtg 55788005
Score = 153 bits (77), Expect = 2e-34
Identities = 77/77 (100%)
Strand = Plus / Plus
Query: 585 atgctggatttgagattccaaacttatttgttgtgggttatgccttagattacaatgaat 644
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 55908653 atgctggatttgagattccaaacttatttgttgtgggttatgccttagattacaatgaat 55908712
Query: 645 acttcagagatctgaat 661
|||||||||||||||||
Sbjct: 55908713 acttcagagatctgaat 55908729
Score = 133 bits (67), Expect = 2e-28
Identities = 67/67 (100%)
Strand = Plus / Plus
Query: 370 gaacgaccagtccatggacgagatgcagataattggaggcgaagatctttcaacactggc 429
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 55891452 gaacgaccagtccatggacgagatgcagataattggaggcgaagatctttcaacactggc 55891511
Query: 430 tggaaag 436
|||||||
Sbjct: 55891512 tggaaag 55891518
Score = 97.6 bits (49), Expect = 1e-17
Identities = 49/49 (100%)
Strand = Plus / Plus
Query: 536 agtttgttggtgaagagaacacctagaagtgatggctttagacctgact 584
|||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 55904539 agtttgttggtgaagagaacacctagaagtgatggctttagacctgact 55904587
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 35,424,102
Number of extensions: 204
Number of successful extensions: 204
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 200
Number of HSP's successfully gapped: 8
Length of query: 1079
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1058
Effective length of database: 2,808,413,156
Effective search space: 2971301119048
Effective search space used: 2971301119048
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)