Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-004200
(1775 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001015526.1| 1-aminocyclopropane-1-carboxylate synthase-l... 850 0.0
Alignment gi|XP_002693605.1| PREDICTED: 1-aminocyclopropane-1-carboxylate... 506 e-143
Alignment gi|XP_601090.4| PREDICTED: 1-aminocyclopropane-1-carboxylate sy... 506 e-143
Alignment gi|NP_001029762.1| tyrosine aminotransferase [Bos taurus]. 65 1e-10
Alignment gi|NP_001077209.1| alanine aminotransferase 1 [Bos taurus]. 64 3e-10
Alignment gi|XP_002694817.1| PREDICTED: glutamic pyruvate transaminase (a... 64 4e-10
Alignment gi|NP_001180116.1| alanine aminotransferase 2 [Bos taurus]. 64 6e-10
Alignment gi|NP_001068838.1| kynurenine--oxoglutarate transaminase 3 [Bos... 60 5e-09
Alignment gi|NP_001071446.1| kynurenine--oxoglutarate transaminase 1 [Bos... 55 2e-07
Alignment gi|XP_002706546.1| PREDICTED: kynurenine aminotransferase I-lik... 55 2e-07
>ref|NP_001015526.1| 1-aminocyclopropane-1-carboxylate synthase-like protein 1 [Bos
taurus].
Length = 502
Score = 850 bits (2196), Expect = 0.0
Identities = 418/490 (85%), Positives = 445/490 (90%)
Frame = +3
Query: 303 MSTLCQKETRTPATCLGSGSTQGLHSSNGDDVERECSRKPDQKPLKCYRVGDPTAMFSPN 482
M TL QKE R C GS S Q L S+ GD +ERECSRKPDQK LK Y VGDP A S +
Sbjct: 1 MFTLPQKEFRMTTACPGSDSIQDLPSNKGDGLERECSRKPDQKLLKFYGVGDPAAELSSS 60
Query: 483 SPHLSSRGSVIKWFWDSAEEGYRTYHMDEYDEDKNPNGIINLGTSENKLCFDLLTRRLSQ 662
SP+LSSRGSVIKWFWDSAEEGYRTYHMDEYDEDKNP+GIINLGTSENKLCFDLL+RRLSQ
Sbjct: 61 SPYLSSRGSVIKWFWDSAEEGYRTYHMDEYDEDKNPSGIINLGTSENKLCFDLLSRRLSQ 120
Query: 663 SDMLWVEPSLLQYPDWRGHLFLREEVARFLSFYCKSPAPLKPENVVVLNGCASLFSALAT 842
SDML VEP+LLQYPDWRGHLFLREEVARFLSFYC+SPAPLKPENVVVLNGCASLFSALAT
Sbjct: 121 SDMLQVEPALLQYPDWRGHLFLREEVARFLSFYCRSPAPLKPENVVVLNGCASLFSALAT 180
Query: 843 VLCEAGEAFLIPAPYYGSITQHVCLYGGVRLVCVYLDSEVTGLETRPFQLTVEKLEMALQ 1022
VLCEAGEAFLIPAPYYG+ITQHV LYG VRLVCVYLDSEVTGLETRPFQLTVEKLEMALQ
Sbjct: 181 VLCEAGEAFLIPAPYYGAITQHVYLYGNVRLVCVYLDSEVTGLETRPFQLTVEKLEMALQ 240
Query: 1023 GANSEGVKVKGLILINPHNPLGDVYSLGELQEYLDFAKRHELHVIVDEIYLLSVFEKSVE 1202
GANSEGVKVKGLILINP NPLGD+YS GELQEYL+FAKRHELHV+VDE+Y+LSVFE+S
Sbjct: 241 GANSEGVKVKGLILINPQNPLGDIYSPGELQEYLEFAKRHELHVMVDEVYMLSVFEESAG 300
Query: 1203 FHSVLSLERLPDSQRTHVMWAASKDFGMSGIRFGTLYTENRDVATAVASLCRYHSLSGLV 1382
+ SVLSLERLPD QRTHVMWA SKDFGMSG+RFGTLYTEN VATAVASLCRYH LSGLV
Sbjct: 301 YRSVLSLERLPDPQRTHVMWATSKDFGMSGLRFGTLYTENWAVATAVASLCRYHGLSGLV 360
Query: 1383 QYQMAQLFRDRNWINQVYLPENHARLKAAHTYVSEELRALGIPFLSRGAGFFIWANLGKY 1562
QYQMAQL RD +WINQVYLPENHARLKAAHTYVSE+LRALGIPF+SRGAGFFIW +L KY
Sbjct: 361 QYQMAQLLRDHDWINQVYLPENHARLKAAHTYVSEDLRALGIPFVSRGAGFFIWVDLRKY 420
Query: 1563 LPEATFEQEMLLWRRFLDNKVLLSFGKAFECKEPGWFRLVFSDRMHRLRLGMHRVRQVLE 1742
LPEATFE+E+LLWRRFL+NKVLLSFGKAFECKEPGWFRLVFSD+ HRL LGM RVRQVLE
Sbjct: 421 LPEATFEEEVLLWRRFLENKVLLSFGKAFECKEPGWFRLVFSDKTHRLHLGMQRVRQVLE 480
Query: 1743 SESQVAADAP 1772
+ Q+A AP
Sbjct: 481 GQPQLADGAP 490
>ref|XP_002693605.1| PREDICTED: 1-aminocyclopropane-1-carboxylate synthase-like protein
2-like [Bos taurus].
Length = 689
Score = 506 bits (1303), Expect = e-143
Identities = 246/421 (58%), Positives = 315/421 (74%)
Frame = +3
Query: 492 LSSRGSVIKWFWDSAEEGYRTYHMDEYDEDKNPNGIINLGTSENKLCFDLLTRRLSQSDM 671
LS+RG I + + Y TY ++Y +DKN G INLGTSENKLC DLL RLSQSDM
Sbjct: 238 LSNRGIDISALYHLSFRDYDTYQGNKYHKDKNTLGYINLGTSENKLCTDLLAERLSQSDM 297
Query: 672 LWVEPSLLQYPDWRGHLFLREEVARFLSFYCKSPAPLKPENVVVLNGCASLFSALATVLC 851
+V+ LLQY DWRG FLR+EVARFL+FYCK+P PL PENVV+LNGC+++FSALA VLC
Sbjct: 298 TYVDEDLLQYTDWRGQPFLRKEVARFLTFYCKTPKPLDPENVVILNGCSAVFSALAMVLC 357
Query: 852 EAGEAFLIPAPYYGSITQHVCLYGGVRLVCVYLDSEVTGLETRPFQLTVEKLEMALQGAN 1031
+ GEAFL+P P YG LY V+LV V+L+S+VT PFQLTV+KLE L A
Sbjct: 358 DPGEAFLVPTPAYGGFAFSTHLYAKVKLVPVHLESQVTEANGYPFQLTVDKLEHTLLRAK 417
Query: 1032 SEGVKVKGLILINPHNPLGDVYSLGELQEYLDFAKRHELHVIVDEIYLLSVFEKSVEFHS 1211
EG KV+GL+LINP NPLGDVYS + EYL+FAK++ LHVIVDE+Y+LSVF++++ FHS
Sbjct: 418 IEGKKVRGLVLINPQNPLGDVYSQDSMMEYLEFAKKYNLHVIVDEMYMLSVFDEAITFHS 477
Query: 1212 VLSLERLPDSQRTHVMWAASKDFGMSGIRFGTLYTENRDVATAVASLCRYHSLSGLVQYQ 1391
VLS++ LPD +THV+W ASKDF +SG RFG LYT NR+VA+A++ HS+SG+ QY+
Sbjct: 478 VLSMKSLPDPNKTHVIWGASKDFCISGFRFGALYTHNREVASAMSCFGYLHSISGIAQYK 537
Query: 1392 MAQLFRDRNWINQVYLPENHARLKAAHTYVSEELRALGIPFLSRGAGFFIWANLGKYLPE 1571
+ QL +DR WI+ +YLP H RL+ AH YV+ +L+A +PFL+RG+G ++W NL +YL
Sbjct: 538 LRQLLQDREWIDNIYLPSYHFRLQEAHRYVTRKLKASKVPFLNRGSGLYVWINLKQYLDP 597
Query: 1572 ATFEQEMLLWRRFLDNKVLLSFGKAFECKEPGWFRLVFSDRMHRLRLGMHRVRQVLESES 1751
TFE+E+LL RRFLD+K++LS GK F CKEPGWFRLVF+ R H LR M R +QVL ++
Sbjct: 598 CTFEEELLLHRRFLDHKLILSPGKTFMCKEPGWFRLVFAARPHLLRNAMRRFQQVLVEQA 657
Query: 1752 Q 1754
Q
Sbjct: 658 Q 658
>ref|XP_601090.4| PREDICTED: 1-aminocyclopropane-1-carboxylate synthase homolog
(Arabidopsis)(non-functional)-like [Bos taurus].
Length = 689
Score = 506 bits (1303), Expect = e-143
Identities = 246/421 (58%), Positives = 315/421 (74%)
Frame = +3
Query: 492 LSSRGSVIKWFWDSAEEGYRTYHMDEYDEDKNPNGIINLGTSENKLCFDLLTRRLSQSDM 671
LS+RG I + + Y TY ++Y +DKN G INLGTSENKLC DLL RLSQSDM
Sbjct: 238 LSNRGIDISALYHLSFRDYDTYQGNKYHKDKNTLGYINLGTSENKLCTDLLAERLSQSDM 297
Query: 672 LWVEPSLLQYPDWRGHLFLREEVARFLSFYCKSPAPLKPENVVVLNGCASLFSALATVLC 851
+V+ LLQY DWRG FLR+EVARFL+FYCK+P PL PENVV+LNGC+++FSALA VLC
Sbjct: 298 TYVDEDLLQYTDWRGQPFLRKEVARFLTFYCKTPKPLDPENVVILNGCSAVFSALAMVLC 357
Query: 852 EAGEAFLIPAPYYGSITQHVCLYGGVRLVCVYLDSEVTGLETRPFQLTVEKLEMALQGAN 1031
+ GEAFL+P P YG LY V+LV V+L+S+VT PFQLTV+KLE L A
Sbjct: 358 DPGEAFLVPTPAYGGFAFSTHLYAKVKLVPVHLESQVTEANGYPFQLTVDKLEHTLLRAK 417
Query: 1032 SEGVKVKGLILINPHNPLGDVYSLGELQEYLDFAKRHELHVIVDEIYLLSVFEKSVEFHS 1211
EG KV+GL+LINP NPLGDVYS + EYL+FAK++ LHVIVDE+Y+LSVF++++ FHS
Sbjct: 418 IEGKKVRGLVLINPQNPLGDVYSQDSMMEYLEFAKKYNLHVIVDEMYMLSVFDEAITFHS 477
Query: 1212 VLSLERLPDSQRTHVMWAASKDFGMSGIRFGTLYTENRDVATAVASLCRYHSLSGLVQYQ 1391
VLS++ LPD +THV+W ASKDF +SG RFG LYT NR+VA+A++ HS+SG+ QY+
Sbjct: 478 VLSMKSLPDPNKTHVIWGASKDFCISGFRFGALYTHNREVASAMSCFGYLHSISGIAQYK 537
Query: 1392 MAQLFRDRNWINQVYLPENHARLKAAHTYVSEELRALGIPFLSRGAGFFIWANLGKYLPE 1571
+ QL +DR WI+ +YLP H RL+ AH YV+ +L+A +PFL+RG+G ++W NL +YL
Sbjct: 538 LRQLLQDREWIDNIYLPSYHFRLQEAHRYVTRKLKASKVPFLNRGSGLYVWINLKQYLDP 597
Query: 1572 ATFEQEMLLWRRFLDNKVLLSFGKAFECKEPGWFRLVFSDRMHRLRLGMHRVRQVLESES 1751
TFE+E+LL RRFLD+K++LS GK F CKEPGWFRLVF+ R H LR M R +QVL ++
Sbjct: 598 CTFEEELLLHRRFLDHKLILSPGKTFMCKEPGWFRLVFAARPHLLRNAMRRFQQVLVEQA 657
Query: 1752 Q 1754
Q
Sbjct: 658 Q 658
>ref|NP_001029762.1| tyrosine aminotransferase [Bos taurus].
Length = 447
Score = 65.5 bits (158), Expect = 1e-10
Identities = 54/163 (33%), Positives = 79/163 (48%), Gaps = 2/163 (1%)
Frame = +3
Query: 714 GHLFLREEVARFLSFYCKSPAPLKPENVVVLNGCASLFSALATVLCEAGEAFLIPAPYYG 893
G+L REEVA S+Y APL+ ++V++ +GC+ VL G+ L+P P +
Sbjct: 107 GYLSSREEVA---SYYHCPEAPLEAKDVILTSGCSQAIELCLAVLANPGQNILVPRPGFS 163
Query: 894 SITQHVCLYGGVRLVCVYLDSEVTGLETRPFQLTVEK-LEMALQGANSE-GVKVKGLILI 1067
LY + +E G+E + + L EK E+ L+ S K LI+
Sbjct: 164 -------LYRTL--------AESMGIEVKLYNLLPEKNWEIDLKQLESLIDEKTVCLIVN 208
Query: 1068 NPHNPLGDVYSLGELQEYLDFAKRHELHVIVDEIYLLSVFEKS 1196
NP NP G V+S LQ+ L A R + ++ DEIY VF S
Sbjct: 209 NPSNPCGSVFSRRHLQKILAVAARQCVPILADEIYGDMVFSDS 251
>ref|NP_001077209.1| alanine aminotransferase 1 [Bos taurus].
Length = 496
Score = 64.3 bits (155), Expect = 3e-10
Identities = 69/229 (30%), Positives = 104/229 (45%), Gaps = 13/229 (5%)
Frame = +3
Query: 687 SLLQYPDWRGHLFLREEVARFLSFYCKSPAPLKPENVVVLNGCASLFSALATVL--CEAG 860
SL Y G +RE+VAR++ P P N+ + G + A+ TVL G
Sbjct: 119 SLGAYSISAGVQMIREDVARYIERR-DGGIPADPNNIFLSTGASD---AIVTVLKLLVTG 174
Query: 861 EA-----FLIPAPYYGSITQHVCLYGGVRLVCVYLDSEVTGLETRPFQLTVEKLEMALQG 1025
E LIP P Y + + + V+ V YLD E R + L V +L AL+
Sbjct: 175 EGRTRTGVLIPIPQYPLYSAALAEFNAVQ-VDYYLDEE------RAWALDVAELRRALRQ 227
Query: 1026 ANSEGVKVKGLILINPHNPLGDVYSLGELQEYLDFAKRHELHVIVDEIYLLSVFEKSVEF 1205
A + + L +INP NP G V + +++ + FA +L ++ DE+Y +V+ +S +F
Sbjct: 228 ARDH-CRPRALCVINPGNPTGQVQTRECIEDVIRFAYEEKLFLLADEVYQDNVYAESSQF 286
Query: 1206 HS---VLSLERLP--DSQRTHVMWAASKDF-GMSGIRFGTLYTENRDVA 1334
HS VL+ P Q + SK + G G R G + N D A
Sbjct: 287 HSFKKVLTEMGPPYAAQQELASFHSISKGYMGECGFRGGYVEVVNMDAA 335
>ref|XP_002694817.1| PREDICTED: glutamic pyruvate transaminase (alanine aminotransferase)
2 [Bos taurus].
Length = 523
Score = 63.9 bits (154), Expect = 4e-10
Identities = 51/179 (28%), Positives = 83/179 (46%), Gaps = 4/179 (2%)
Frame = +3
Query: 687 SLLQYPDWRGHLFLREEVARFLSFYCKSPAPLKPENVVVLNGCASLFSALATVLCEAG-- 860
SL Y +G +RE+VA +++ P P+N+ + G + S + +L G
Sbjct: 146 SLGSYSASQGVNCIREDVAAYITRR-DGGVPADPDNIYLTTGASDGISTILKILVSGGGK 204
Query: 861 --EAFLIPAPYYGSITQHVCLYGGVRLVCVYLDSEVTGLETRPFQLTVEKLEMALQGANS 1034
+IP P Y + + ++ V YLD E + L V +L A+Q A
Sbjct: 205 SRTGVMIPIPQYPLYSAVISELDAIQ-VNYYLD------EDNCWALNVNELRRAVQQAK- 256
Query: 1035 EGVKVKGLILINPHNPLGDVYSLGELQEYLDFAKRHELHVIVDEIYLLSVFEKSVEFHS 1211
E K L +INP NP G V S +++ + FA +L ++ DE+Y +V+ +FHS
Sbjct: 257 EHCNPKVLCIINPGNPTGQVQSRKCIEDVIHFAWEEKLFLLADEVYQDNVYSSDCKFHS 315
>ref|NP_001180116.1| alanine aminotransferase 2 [Bos taurus].
Length = 523
Score = 63.5 bits (153), Expect = 6e-10
Identities = 51/179 (28%), Positives = 83/179 (46%), Gaps = 4/179 (2%)
Frame = +3
Query: 687 SLLQYPDWRGHLFLREEVARFLSFYCKSPAPLKPENVVVLNGCASLFSALATVLCEAG-- 860
SL Y +G +RE+VA +++ P P+N+ + G + S + +L G
Sbjct: 146 SLGSYSASQGVNCIREDVAAYITRR-DGGVPADPDNIYLTTGASDGISTILKILVSGGGK 204
Query: 861 --EAFLIPAPYYGSITQHVCLYGGVRLVCVYLDSEVTGLETRPFQLTVEKLEMALQGANS 1034
+IP P Y + + ++ V YLD E + L V +L A+Q A
Sbjct: 205 SRTGVMIPIPQYPLYSAVISELDAIQ-VNYYLD------EDNFWALNVNELRRAVQQAK- 256
Query: 1035 EGVKVKGLILINPHNPLGDVYSLGELQEYLDFAKRHELHVIVDEIYLLSVFEKSVEFHS 1211
E K L +INP NP G V S +++ + FA +L ++ DE+Y +V+ +FHS
Sbjct: 257 EHCNPKVLCIINPGNPTGQVQSRKCIEDVIHFAWEEKLFLLADEVYQDNVYSSDCKFHS 315
>ref|NP_001068838.1| kynurenine--oxoglutarate transaminase 3 [Bos taurus].
Length = 455
Score = 60.5 bits (145), Expect = 5e-09
Identities = 55/207 (26%), Positives = 92/207 (44%), Gaps = 1/207 (0%)
Frame = +3
Query: 687 SLLQYPDWRGHLFLREEVARFLSFYCKSPAPLKPENVVVLNGCASLFSALATVLCEAGEA 866
+L QY GH L + ++ + + E +V + SLF+A+ ++ E E
Sbjct: 93 NLNQYTRGFGHPSLVKALSCLYEKFYHNKINPNEEILVTVGAYGSLFNAIQGLIDEGDEV 152
Query: 867 FLIPAPYYGSITQHVCLYGGVRLVCVYLDSEVTGLETRPFQLTVEKLEMALQGANSEGVK 1046
+I P++ V + G + V G + T++ E+A + NS K
Sbjct: 153 IVI-VPFFDCYESMVRMAGATPVFVPLRCKPVDGKKCSSSDWTLDPQELASK-FNS---K 207
Query: 1047 VKGLILINPHNPLGDVYSLGELQEYLDFAKRHELHVIVDEIYLLSVFEKSVEFHSVLSLE 1226
K +IL PHNPLG VY+ ELQ D +++ I DE+Y V+ + F +
Sbjct: 208 TKAIILNTPHNPLGKVYTKEELQVIADLCIKYDTLCISDEVYEWLVYTGNKHF----KIA 263
Query: 1227 RLPDS-QRTHVMWAASKDFGMSGIRFG 1304
P +RT + +A K F ++G + G
Sbjct: 264 TFPGMWERTITIGSAGKTFSVTGWKLG 290
>ref|NP_001071446.1| kynurenine--oxoglutarate transaminase 1 [Bos taurus].
Length = 425
Score = 55.1 bits (131), Expect = 2e-07
Identities = 70/266 (26%), Positives = 120/266 (45%), Gaps = 11/266 (4%)
Frame = +3
Query: 777 PLKPENVVVLNGC-ASLFSALATVLCEAGEAFLIPAPYYGSITQHVCLYGGVRLVCVYLD 953
PLK NV+V G +LF+A ++ E E +I P++ + GG R V V L
Sbjct: 91 PLK--NVLVTVGAYGALFTAFQALVDEGDEVIIIE-PFFDCYEPMTLMAGG-RPVFVSLK 146
Query: 954 SEVT--GLETRPFQLTVEKLEMALQGANSEGVKVKGLILINPHNPLGDVYSLGELQEYLD 1127
T G ++ E+A + + + K IL P+NPLG V+S EL+
Sbjct: 147 PSPTQKGEPDSSSNWQLDPTELASKFTS----RTKAFILNTPNNPLGKVFSKEELELVAS 202
Query: 1128 FAKRHELHVIVDEIYLLSVFEKSVEFHSVLSLERLPDSQRTHVMWAASKDFGMSGIRFG- 1304
++H++ I DE+Y VF+ + S+ SL + +RT + +A K F ++G + G
Sbjct: 203 LCQQHDVVCISDEVYQWMVFD-GFQHISIASLPGM--WERTLTIGSAGKTFSVTGWKVGW 259
Query: 1305 -----TLYTENRDVATAVASLCRYHSLSGLVQ-YQMAQLFRDRNWINQVYLPENHARLKA 1466
+L R V C + + Q ++ QL R V LP+ ++
Sbjct: 260 VLGPDSLMKHLRTVHQNSIYHCATQGQAAVAQSFEREQLHFGRPSSYFVQLPQ---YIQR 316
Query: 1467 AHTYVSEELRALGI-PFLSRGAGFFI 1541
++ + L+++G P + +G+ F I
Sbjct: 317 CRDHMIQSLQSMGFRPVIPQGSYFLI 342
>ref|XP_002706546.1| PREDICTED: kynurenine aminotransferase I-like isoform 1 [Bos taurus].
Length = 425
Score = 55.1 bits (131), Expect = 2e-07
Identities = 70/266 (26%), Positives = 120/266 (45%), Gaps = 11/266 (4%)
Frame = +3
Query: 777 PLKPENVVVLNGC-ASLFSALATVLCEAGEAFLIPAPYYGSITQHVCLYGGVRLVCVYLD 953
PLK NV+V G +LF+A ++ E E +I P++ + GG R V V L
Sbjct: 91 PLK--NVLVTVGAYGALFTAFQALVDEGDEVIIIE-PFFDCYEPMTLMAGG-RPVFVSLK 146
Query: 954 SEVT--GLETRPFQLTVEKLEMALQGANSEGVKVKGLILINPHNPLGDVYSLGELQEYLD 1127
T G ++ E+A + + + K IL P+NPLG V+S EL+
Sbjct: 147 PSPTQKGEPDSSSNWQLDPTELASKFTS----RTKAFILNTPNNPLGKVFSKEELELVAS 202
Query: 1128 FAKRHELHVIVDEIYLLSVFEKSVEFHSVLSLERLPDSQRTHVMWAASKDFGMSGIRFG- 1304
++H++ I DE+Y VF+ + S+ SL + +RT + +A K F ++G + G
Sbjct: 203 LCQQHDVVCISDEVYQWMVFD-GFQHISIASLPGM--WERTLTIGSAGKTFSVTGWKVGW 259
Query: 1305 -----TLYTENRDVATAVASLCRYHSLSGLVQ-YQMAQLFRDRNWINQVYLPENHARLKA 1466
+L R V C + + Q ++ QL R V LP+ ++
Sbjct: 260 VLGPDSLMKHLRTVHQNSIYHCATQGQAAVAQSFEREQLHFGRPSSYFVQLPQ---YIQR 316
Query: 1467 AHTYVSEELRALGI-PFLSRGAGFFI 1541
++ + L+++G P + +G+ F I
Sbjct: 317 CRDHMIQSLQSMGFRPVIPQGSYFLI 342
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 75,059,571
Number of extensions: 2392474
Number of successful extensions: 12703
Number of sequences better than 1.0e-05: 13
Number of HSP's gapped: 12614
Number of HSP's successfully gapped: 13
Length of query: 591
Length of database: 17,681,374
Length adjustment: 108
Effective length of query: 483
Effective length of database: 14,107,870
Effective search space: 6814101210
Effective search space used: 6814101210
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-004200
(1775 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_854150.1| PREDICTED: similar to 1-aminocyclopropane-1-car... 826 0.0
Alignment gi|XP_537084.1| PREDICTED: similar to kynurenine aminotransfera... 69 1e-11
Alignment gi|XP_536796.2| PREDICTED: similar to Tyrosine aminotransferase... 68 2e-11
Alignment gi|XP_851866.1| PREDICTED: similar to alanine aminotransferase ... 60 5e-09
Alignment gi|XP_548431.2| PREDICTED: similar to Kynurenine--oxoglutarate ... 55 3e-07
>ref|XP_854150.1| PREDICTED: similar to 1-aminocyclopropane-1-carboxylate synthase
[Canis familiaris].
Length = 603
Score = 826 bits (2134), Expect = 0.0
Identities = 409/486 (84%), Positives = 441/486 (90%)
Frame = +3
Query: 303 MSTLCQKETRTPATCLGSGSTQGLHSSNGDDVERECSRKPDQKPLKCYRVGDPTAMFSPN 482
M TL Q+E+R PAT LGS ST+ S+ GD +ERE SRKPDQK + VGDP AMFS N
Sbjct: 1 MFTLPQEESRAPATGLGSASTRD--SNYGDGLERERSRKPDQKLPEFCAVGDPAAMFSSN 58
Query: 483 SPHLSSRGSVIKWFWDSAEEGYRTYHMDEYDEDKNPNGIINLGTSENKLCFDLLTRRLSQ 662
+ +LSSRG +IKWFWDSAEEGYRTYHMDEYDEDKNP+GIINLGTSENKLCFDLL+RRLSQ
Sbjct: 59 NSYLSSRGGIIKWFWDSAEEGYRTYHMDEYDEDKNPSGIINLGTSENKLCFDLLSRRLSQ 118
Query: 663 SDMLWVEPSLLQYPDWRGHLFLREEVARFLSFYCKSPAPLKPENVVVLNGCASLFSALAT 842
SDML VEPSLLQYPDWRGHLFLREEVARFLSFYCKSPAPLKPENVVVLNGCASLFSALAT
Sbjct: 119 SDMLRVEPSLLQYPDWRGHLFLREEVARFLSFYCKSPAPLKPENVVVLNGCASLFSALAT 178
Query: 843 VLCEAGEAFLIPAPYYGSITQHVCLYGGVRLVCVYLDSEVTGLETRPFQLTVEKLEMALQ 1022
VLCE GEAFLIPAPYYG+ITQHVCLYG VRLVCV+LDSEVTGL+TRPFQLTVEKLEMALQ
Sbjct: 179 VLCEVGEAFLIPAPYYGAITQHVCLYGNVRLVCVHLDSEVTGLDTRPFQLTVEKLEMALQ 238
Query: 1023 GANSEGVKVKGLILINPHNPLGDVYSLGELQEYLDFAKRHELHVIVDEIYLLSVFEKSVE 1202
A+SEGVKVKGLILINPHNPLGD+YS GEL++YL+FAKRHELHV+VDE+Y+LSVFEKS
Sbjct: 239 RAHSEGVKVKGLILINPHNPLGDIYSPGELRDYLEFAKRHELHVMVDEVYMLSVFEKSAA 298
Query: 1203 FHSVLSLERLPDSQRTHVMWAASKDFGMSGIRFGTLYTENRDVATAVASLCRYHSLSGLV 1382
+ SVLSLE LPD QRTHVMWA SKDFGMSG+RFGTLYTENRDVATAVASLCRYH LSGLV
Sbjct: 299 YCSVLSLEGLPDPQRTHVMWATSKDFGMSGLRFGTLYTENRDVATAVASLCRYHGLSGLV 358
Query: 1383 QYQMAQLFRDRNWINQVYLPENHARLKAAHTYVSEELRALGIPFLSRGAGFFIWANLGKY 1562
QYQMAQL +DR+WINQVYLPENHARLKAAHTYV+ ELRALGIPFLS GAGFFIW +L KY
Sbjct: 359 QYQMAQLLQDRDWINQVYLPENHARLKAAHTYVTGELRALGIPFLSGGAGFFIWVDLRKY 418
Query: 1563 LPEATFEQEMLLWRRFLDNKVLLSFGKAFECKEPGWFRLVFSDRMHRLRLGMHRVRQVLE 1742
LPEATF++EMLLWR FLDNKVLLS GK FECKEPGWFRLVFSD+ HRL LGM RVRQVLE
Sbjct: 419 LPEATFKEEMLLWRCFLDNKVLLSCGKTFECKEPGWFRLVFSDKAHRLCLGMQRVRQVLE 478
Query: 1743 SESQVA 1760
+SQ A
Sbjct: 479 GKSQAA 484
>ref|XP_537084.1| PREDICTED: similar to kynurenine aminotransferase III isoform 1
isoform 1 [Canis familiaris].
Length = 455
Score = 68.9 bits (167), Expect = 1e-11
Identities = 58/207 (28%), Positives = 95/207 (45%), Gaps = 1/207 (0%)
Frame = +3
Query: 687 SLLQYPDWRGHLFLREEVARFLSFYCKSPAPLKPENVVVLNGCASLFSALATVLCEAGEA 866
SL QY GH L + ++ + ++P E +V + SLF+A+ ++ E E
Sbjct: 93 SLNQYTRGFGHPSLVKALSCLYEKFYQNPINPNKEILVTIGAYGSLFNAIQGLIDEGDEV 152
Query: 867 FLIPAPYYGSITQHVCLYGGVRLVCVYLDSEVTGLETRPFQLTVEKLEMALQGANSEGVK 1046
+I P+Y V + GG + V G + T++ E+A + NS K
Sbjct: 153 III-VPFYDCYEPMVRMAGGTPVFIPLRSKPVDGKKWSSSDWTLDPQELASK-FNS---K 207
Query: 1047 VKGLILINPHNPLGDVYSLGELQEYLDFAKRHELHVIVDEIYLLSVFEKSVEFHSVLSLE 1226
K +IL PHNP+G VY+ ELQ D +++ I DE+Y V+ + L +
Sbjct: 208 TKAIILNTPHNPIGKVYTKEELQVIADLCIKYDTLCISDEVYEWLVYTGNKH----LKIA 263
Query: 1227 RLPDS-QRTHVMWAASKDFGMSGIRFG 1304
P +RT + +A K F ++G + G
Sbjct: 264 TFPGMWERTITIGSAGKTFSVTGWKLG 290
>ref|XP_536796.2| PREDICTED: similar to Tyrosine aminotransferase
(L-tyrosine:2-oxoglutarate aminotransferase) (TAT) [Canis
familiaris].
Length = 454
Score = 68.2 bits (165), Expect = 2e-11
Identities = 53/163 (32%), Positives = 80/163 (49%), Gaps = 2/163 (1%)
Frame = +3
Query: 714 GHLFLREEVARFLSFYCKSPAPLKPENVVVLNGCASLFSALATVLCEAGEAFLIPAPYYG 893
G+L REE+A S+Y + APL+ ++V++ +GC+ VL G+ L+P P +
Sbjct: 114 GYLSSREEIA---SYYHRPEAPLEAKDVILTSGCSQAIELCLAVLANPGQNILVPRPGFS 170
Query: 894 SITQHVCLYGGVRLVCVYLDSEVTGLETRPFQLTVEKL-EMALQGANSE-GVKVKGLILI 1067
LY + +E G+E + + L EK E+ L+ S K LI+
Sbjct: 171 -------LYRTL--------AESMGIEVKLYNLLPEKSWEIDLKQLESLIDEKTACLIVN 215
Query: 1068 NPHNPLGDVYSLGELQEYLDFAKRHELHVIVDEIYLLSVFEKS 1196
NP NP G V+S LQ+ L A R + ++ DEIY VF S
Sbjct: 216 NPSNPCGSVFSKSHLQKILAVAARQCVPILADEIYGDMVFSDS 258
>ref|XP_851866.1| PREDICTED: similar to alanine aminotransferase 2 [Canis familiaris].
Length = 374
Score = 60.5 bits (145), Expect = 5e-09
Identities = 51/179 (28%), Positives = 80/179 (44%), Gaps = 4/179 (2%)
Frame = +3
Query: 687 SLLQYPDWRGHLFLREEVARFLSFYCKSPAPLKPENVVVLNGCASLFSALATVLCEAG-- 860
SL Y +G +RE+VA +++ P P N+ + G + S + +L G
Sbjct: 105 SLGSYSASQGVNCIREDVAAYVTRR-DGGVPADPFNIYLTTGASDGISTILKILVSGGGK 163
Query: 861 --EAFLIPAPYYGSITQHVCLYGGVRLVCVYLDSEVTGLETRPFQLTVEKLEMALQGANS 1034
LIP P Y + + ++ V YLD E + L V +L A+Q A
Sbjct: 164 SRTGVLIPIPQYPLYSAVISELDAIQ-VNYYLDEE------NCWALDVNELRRAVQEAKD 216
Query: 1035 EGVKVKGLILINPHNPLGDVYSLGELQEYLDFAKRHELHVIVDEIYLLSVFEKSVEFHS 1211
K L +INP NP G V S +++ + FA +L ++ DE+Y +V+ FHS
Sbjct: 217 H-CNPKVLCIINPGNPTGQVQSRKCIEDVIHFAWEEKLFLLADEVYQDNVYSPDCRFHS 274
>ref|XP_548431.2| PREDICTED: similar to Kynurenine--oxoglutarate transaminase I
(Kynurenine aminotransferase I) (KATI)
(Glutamine--phenylpyruvate transaminase) (Glutamine
transaminase K) (GTK) (Cysteine-S-conjugate beta-lyase)
[Canis familiaris].
Length = 424
Score = 54.7 bits (130), Expect = 3e-07
Identities = 72/293 (24%), Positives = 131/293 (44%), Gaps = 14/293 (4%)
Frame = +3
Query: 777 PLKPENVVVLNGC-ASLFSALATVLCEAGEAFLIPAPYYGSITQHVCLYGGVRLVCVYLD 953
PLK NV+V G +LF+A ++ E E +I P++ + GG +
Sbjct: 90 PLK--NVLVTVGAYGALFTAFQALVDEGDEVIIIE-PFFDCYEPMTLMAGGHPVFVTLKP 146
Query: 954 SEVTGLE---TRPFQLTVEKLEMALQGANSEGVKVKGLILINPHNPLGDVYSLGELQEYL 1124
S E +QL +L A+ + K LIL P+NP+G V+S EL+
Sbjct: 147 SPTQDGELDSASNWQLDPTEL------ASKFTSRTKALILNTPNNPVGKVFSKAELELVA 200
Query: 1125 DFAKRHELHVIVDEIYLLSVFEKSVEFHSVLSLERLPDSQRTHVMWAASKDFGMSGIRFG 1304
+ ++H++ I DE+Y V++ + S+ SL + +RT + +A K F +G + G
Sbjct: 201 NLCQQHDVICITDEVYQWLVYD-GYQHTSIASLPGM--WERTLTIGSAGKSFSATGWKVG 257
Query: 1305 ------TLYTENRDVATAVASLCRYHSLSGLVQ-YQMAQLFRDRNWINQVYLPENHARLK 1463
+L R V C + + Q +Q QL + V P+ ++
Sbjct: 258 WVLGPDSLVKHLRTVHQNSIYHCPTQGQAAVAQSFQHEQLHFGQPSSYFVQFPQ---AMQ 314
Query: 1464 AAHTYVSEELRALGI-PFLSRGAGFFI--WANLGKYLPEATFEQEMLLWRRFL 1613
++ L+++G+ P + +G+ FFI ++ K +P+ +++ RRF+
Sbjct: 315 RCRDHMIRSLQSVGLKPVIPQGSYFFIADISDFKKKMPDLPGDKDEPYDRRFV 367
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 78,159,286
Number of extensions: 2455583
Number of successful extensions: 13111
Number of sequences better than 1.0e-05: 5
Number of HSP's gapped: 12990
Number of HSP's successfully gapped: 5
Length of query: 591
Length of database: 18,874,504
Length adjustment: 108
Effective length of query: 483
Effective length of database: 15,274,216
Effective search space: 7377446328
Effective search space used: 7377446328
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-004200
(1775 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001120691.1| 1-aminocyclopropane-1-carboxylate synthase-l... 804 0.0
Alignment gi|NP_115981.1| 1-aminocyclopropane-1-carboxylate synthase-like... 804 0.0
Alignment gi|NP_001027025.2| 1-aminocyclopropane-1-carboxylate synthase-l... 514 e-145
Alignment gi|NP_005300.1| alanine aminotransferase 1 [Homo sapiens]. 64 6e-10
Alignment gi|NP_001135938.1| alanine aminotransferase 2 isoform 2 [Homo s... 62 2e-09
Alignment gi|NP_597700.1| alanine aminotransferase 2 isoform 1 [Homo sapi... 62 2e-09
Alignment gi|NP_000344.1| tyrosine aminotransferase [Homo sapiens]. 62 2e-09
Alignment gi|NP_001008661.1| kynurenine--oxoglutarate transaminase 3 isof... 62 2e-09
Alignment gi|NP_001008662.1| kynurenine--oxoglutarate transaminase 3 isof... 62 2e-09
Alignment gi|NP_001116143.1| kynurenine--oxoglutarate transaminase 1 isof... 54 5e-07
>ref|NP_001120691.1| 1-aminocyclopropane-1-carboxylate synthase-like protein 1 [Homo
sapiens].
Length = 501
Score = 804 bits (2077), Expect = 0.0
Identities = 401/488 (82%), Positives = 433/488 (88%)
Frame = +3
Query: 303 MSTLCQKETRTPATCLGSGSTQGLHSSNGDDVERECSRKPDQKPLKCYRVGDPTAMFSPN 482
M TL QK+ R P TCLG Q L SS+G+D+E ECSRK DQK + VGDP AM S +
Sbjct: 1 MFTLPQKDFRAPTTCLGPTCMQDLGSSHGEDLEGECSRKLDQKLPELRGVGDP-AMISSD 59
Query: 483 SPHLSSRGSVIKWFWDSAEEGYRTYHMDEYDEDKNPNGIINLGTSENKLCFDLLTRRLSQ 662
+ +LSSRG +IKWFWDSAEEGYRTYHMDEYDEDKNP+GIINLGTSENKLCFDLL+ RLSQ
Sbjct: 60 TSYLSSRGRMIKWFWDSAEEGYRTYHMDEYDEDKNPSGIINLGTSENKLCFDLLSWRLSQ 119
Query: 663 SDMLWVEPSLLQYPDWRGHLFLREEVARFLSFYCKSPAPLKPENVVVLNGCASLFSALAT 842
DM VEPSLLQY DWRGHLFLREEVA+FLSFYCKSP PL+PENVVVLNG ASLFSALAT
Sbjct: 120 RDMQRVEPSLLQYADWRGHLFLREEVAKFLSFYCKSPVPLRPENVVVLNGGASLFSALAT 179
Query: 843 VLCEAGEAFLIPAPYYGSITQHVCLYGGVRLVCVYLDSEVTGLETRPFQLTVEKLEMALQ 1022
VLCEAGEAFLIP PYYG+ITQHVCLYG +RL VYLDSEVTGL+TRPFQLTVEKLEMAL+
Sbjct: 180 VLCEAGEAFLIPTPYYGAITQHVCLYGNIRLAYVYLDSEVTGLDTRPFQLTVEKLEMALR 239
Query: 1023 GANSEGVKVKGLILINPHNPLGDVYSLGELQEYLDFAKRHELHVIVDEIYLLSVFEKSVE 1202
A+SEGVKVKGLILI+P NPLGDVYS ELQEYL FAKRH LHVIVDE+Y+LSVFEKSV
Sbjct: 240 EAHSEGVKVKGLILISPQNPLGDVYSPEELQEYLVFAKRHRLHVIVDEVYMLSVFEKSVG 299
Query: 1203 FHSVLSLERLPDSQRTHVMWAASKDFGMSGIRFGTLYTENRDVATAVASLCRYHSLSGLV 1382
+ SVLSLERLPD QRTHVMWA SKDFGMSG+RFGTLYTEN+DVATAVASLCRYH LSGLV
Sbjct: 300 YRSVLSLERLPDPQRTHVMWATSKDFGMSGLRFGTLYTENQDVATAVASLCRYHGLSGLV 359
Query: 1383 QYQMAQLFRDRNWINQVYLPENHARLKAAHTYVSEELRALGIPFLSRGAGFFIWANLGKY 1562
QYQMAQL RDR+WINQVYLPENHARLKAAHTYVSEELRALGIPFLSRGAGFFIW +L KY
Sbjct: 360 QYQMAQLLRDRDWINQVYLPENHARLKAAHTYVSEELRALGIPFLSRGAGFFIWVDLRKY 419
Query: 1563 LPEATFEQEMLLWRRFLDNKVLLSFGKAFECKEPGWFRLVFSDRMHRLRLGMHRVRQVLE 1742
LP+ TFE+EMLLWRRFLDNKVLLSFGKAFECKEPGWFR VFSD++HRL LGM RV+QVL
Sbjct: 420 LPKGTFEEEMLLWRRFLDNKVLLSFGKAFECKEPGWFRFVFSDQVHRLCLGMQRVQQVLA 479
Query: 1743 SESQVAAD 1766
+SQVA D
Sbjct: 480 GKSQVAED 487
>ref|NP_115981.1| 1-aminocyclopropane-1-carboxylate synthase-like protein 1 [Homo
sapiens].
Length = 501
Score = 804 bits (2077), Expect = 0.0
Identities = 401/488 (82%), Positives = 433/488 (88%)
Frame = +3
Query: 303 MSTLCQKETRTPATCLGSGSTQGLHSSNGDDVERECSRKPDQKPLKCYRVGDPTAMFSPN 482
M TL QK+ R P TCLG Q L SS+G+D+E ECSRK DQK + VGDP AM S +
Sbjct: 1 MFTLPQKDFRAPTTCLGPTCMQDLGSSHGEDLEGECSRKLDQKLPELRGVGDP-AMISSD 59
Query: 483 SPHLSSRGSVIKWFWDSAEEGYRTYHMDEYDEDKNPNGIINLGTSENKLCFDLLTRRLSQ 662
+ +LSSRG +IKWFWDSAEEGYRTYHMDEYDEDKNP+GIINLGTSENKLCFDLL+ RLSQ
Sbjct: 60 TSYLSSRGRMIKWFWDSAEEGYRTYHMDEYDEDKNPSGIINLGTSENKLCFDLLSWRLSQ 119
Query: 663 SDMLWVEPSLLQYPDWRGHLFLREEVARFLSFYCKSPAPLKPENVVVLNGCASLFSALAT 842
DM VEPSLLQY DWRGHLFLREEVA+FLSFYCKSP PL+PENVVVLNG ASLFSALAT
Sbjct: 120 RDMQRVEPSLLQYADWRGHLFLREEVAKFLSFYCKSPVPLRPENVVVLNGGASLFSALAT 179
Query: 843 VLCEAGEAFLIPAPYYGSITQHVCLYGGVRLVCVYLDSEVTGLETRPFQLTVEKLEMALQ 1022
VLCEAGEAFLIP PYYG+ITQHVCLYG +RL VYLDSEVTGL+TRPFQLTVEKLEMAL+
Sbjct: 180 VLCEAGEAFLIPTPYYGAITQHVCLYGNIRLAYVYLDSEVTGLDTRPFQLTVEKLEMALR 239
Query: 1023 GANSEGVKVKGLILINPHNPLGDVYSLGELQEYLDFAKRHELHVIVDEIYLLSVFEKSVE 1202
A+SEGVKVKGLILI+P NPLGDVYS ELQEYL FAKRH LHVIVDE+Y+LSVFEKSV
Sbjct: 240 EAHSEGVKVKGLILISPQNPLGDVYSPEELQEYLVFAKRHRLHVIVDEVYMLSVFEKSVG 299
Query: 1203 FHSVLSLERLPDSQRTHVMWAASKDFGMSGIRFGTLYTENRDVATAVASLCRYHSLSGLV 1382
+ SVLSLERLPD QRTHVMWA SKDFGMSG+RFGTLYTEN+DVATAVASLCRYH LSGLV
Sbjct: 300 YRSVLSLERLPDPQRTHVMWATSKDFGMSGLRFGTLYTENQDVATAVASLCRYHGLSGLV 359
Query: 1383 QYQMAQLFRDRNWINQVYLPENHARLKAAHTYVSEELRALGIPFLSRGAGFFIWANLGKY 1562
QYQMAQL RDR+WINQVYLPENHARLKAAHTYVSEELRALGIPFLSRGAGFFIW +L KY
Sbjct: 360 QYQMAQLLRDRDWINQVYLPENHARLKAAHTYVSEELRALGIPFLSRGAGFFIWVDLRKY 419
Query: 1563 LPEATFEQEMLLWRRFLDNKVLLSFGKAFECKEPGWFRLVFSDRMHRLRLGMHRVRQVLE 1742
LP+ TFE+EMLLWRRFLDNKVLLSFGKAFECKEPGWFR VFSD++HRL LGM RV+QVL
Sbjct: 420 LPKGTFEEEMLLWRRFLDNKVLLSFGKAFECKEPGWFRFVFSDQVHRLCLGMQRVQQVLA 479
Query: 1743 SESQVAAD 1766
+SQVA D
Sbjct: 480 GKSQVAED 487
>ref|NP_001027025.2| 1-aminocyclopropane-1-carboxylate synthase-like protein 2 [Homo
sapiens].
Length = 568
Score = 514 bits (1324), Expect = e-145
Identities = 261/480 (54%), Positives = 336/480 (70%), Gaps = 11/480 (2%)
Frame = +3
Query: 348 LGSGSTQGLH--------SSNGD---DVERECSRKPDQKPLKCYRVGDPTAMFSPNSPHL 494
L SG+ GL S GD + S +PD P ++ D A F L
Sbjct: 82 LQSGAASGLELQVPLPSEDSRGDVRYGQRAQLSGQPDPVP----QLSDCEAAFVNRD--L 135
Query: 495 SSRGSVIKWFWDSAEEGYRTYHMDEYDEDKNPNGIINLGTSENKLCFDLLTRRLSQSDML 674
S RG I F+ S+ + Y Y D+Y +DKN G INLGTSENKLC DL+T RL +SDM
Sbjct: 136 SIRGIDISVFYQSSFQDYNAYQKDKYHKDKNTLGFINLGTSENKLCMDLMTERLQESDMN 195
Query: 675 WVEPSLLQYPDWRGHLFLREEVARFLSFYCKSPAPLKPENVVVLNGCASLFSALATVLCE 854
+E +LLQYPDWRG FLREEVARFL++YC++P L PENVVVLNGC S+F ALA VLC+
Sbjct: 196 CIEDTLLQYPDWRGQPFLREEVARFLTYYCRAPTRLDPENVVVLNGCCSVFCALAMVLCD 255
Query: 855 AGEAFLIPAPYYGSITQHVCLYGGVRLVCVYLDSEVTGLETRPFQLTVEKLEMALQGANS 1034
GEAFL+PAP+YG LY V L+ V+L+SEVT T PFQLTV+KLE AL A
Sbjct: 256 PGEAFLVPAPFYGGFAFSSRLYAKVELIPVHLESEVTVTNTHPFQLTVDKLEEALLEARL 315
Query: 1035 EGVKVKGLILINPHNPLGDVYSLGELQEYLDFAKRHELHVIVDEIYLLSVFEKSVEFHSV 1214
EG KV+GL+LINP NPLGD+YS L +YL+FAKR+ LHVI+DEIY+LSVF++S+ FHS+
Sbjct: 316 EGKKVRGLVLINPQNPLGDIYSPDSLMKYLEFAKRYNLHVIIDEIYMLSVFDESITFHSI 375
Query: 1215 LSLERLPDSQRTHVMWAASKDFGMSGIRFGTLYTENRDVATAVASLCRYHSLSGLVQYQM 1394
LS++ LPDS RTHV+W SKDFG+SG RFG LYT N++VA+AV++ HS+SG+ Q+++
Sbjct: 376 LSMKSLPDSNRTHVIWGTSKDFGISGFRFGALYTHNKEVASAVSAFGYLHSISGITQHKL 435
Query: 1395 AQLFRDRNWINQVYLPENHARLKAAHTYVSEELRALGIPFLSRGAGFFIWANLGKYLPEA 1574
QL ++ WI++VYLP N RL+ AH Y++ EL+AL IPF +R +G ++W NL KYL
Sbjct: 436 CQLLQNTEWIDKVYLPTNCYRLREAHKYITAELKALEIPFHNRSSGLYVWINLKKYLDPC 495
Query: 1575 TFEQEMLLWRRFLDNKVLLSFGKAFECKEPGWFRLVFSDRMHRLRLGMHRVRQVLESESQ 1754
TFE+E LL+ RFLDNK+LLS GK + CKEPGWF L+F+D + RL+L M R VL+ + +
Sbjct: 496 TFEEERLLYCRFLDNKLLLSRGKTYMCKEPGWFCLIFADELPRLKLAMRRFCDVLQEQKE 555
>ref|NP_005300.1| alanine aminotransferase 1 [Homo sapiens].
Length = 496
Score = 63.5 bits (153), Expect = 6e-10
Identities = 70/229 (30%), Positives = 101/229 (44%), Gaps = 13/229 (5%)
Frame = +3
Query: 687 SLLQYPDWRGHLFLREEVARFLSFYCKSPAPLKPENVVVLNGCASLFSALATVL--CEAG 860
SL Y G +RE+VAR++ P P NV + G + A+ TVL AG
Sbjct: 119 SLGAYSVSSGIQLIREDVARYIERR-DGGIPADPNNVFLSTGASD---AIVTVLKLLVAG 174
Query: 861 EAF-----LIPAPYYGSITQHVCLYGGVRLVCVYLDSEVTGLETRPFQLTVEKLEMALQG 1025
E LIP P Y + + G V+ V YLD E R + L V +L AL G
Sbjct: 175 EGHTRTGVLIPIPQYPLYSATLAELGAVQ-VDYYLDEE------RAWALDVAELHRAL-G 226
Query: 1026 ANSEGVKVKGLILINPHNPLGDVYSLGELQEYLDFAKRHELHVIVDEIYLLSVFEKSVEF 1205
+ + + L +INP NP G V + ++ + FA L ++ DE+Y +V+ +F
Sbjct: 227 QARDHCRPRALCVINPGNPTGQVQTRECIEAVIRFAFEERLFLLADEVYQDNVYAAGSQF 286
Query: 1206 HSV--LSLERLP---DSQRTHVMWAASKDF-GMSGIRFGTLYTENRDVA 1334
HS + +E P Q + SK + G G R G + N D A
Sbjct: 287 HSFKKVLMEMGPPYAGQQELASFHSTSKGYMGECGFRGGYVEVVNMDAA 335
>ref|NP_001135938.1| alanine aminotransferase 2 isoform 2 [Homo sapiens].
Length = 423
Score = 62.0 bits (149), Expect = 2e-09
Identities = 50/179 (27%), Positives = 81/179 (45%), Gaps = 4/179 (2%)
Frame = +3
Query: 687 SLLQYPDWRGHLFLREEVARFLSFYCKSPAPLKPENVVVLNGCASLFSALATVLCEAG-- 860
SL Y +G +RE+VA +++ P P+N+ + G + S + +L G
Sbjct: 46 SLGSYSASQGVNCIREDVAAYITRR-DGGVPADPDNIYLTTGASDGISTILKILVSGGGK 104
Query: 861 --EAFLIPAPYYGSITQHVCLYGGVRLVCVYLDSEVTGLETRPFQLTVEKLEMALQGANS 1034
+IP P Y + + ++ V YLD E + L V +L A+Q A
Sbjct: 105 SRTGVMIPIPQYPLYSAVISELDAIQ-VNYYLDEE------NCWALNVNELRRAVQEAKD 157
Query: 1035 EGVKVKGLILINPHNPLGDVYSLGELQEYLDFAKRHELHVIVDEIYLLSVFEKSVEFHS 1211
K L +INP NP G V S +++ + FA +L ++ DE+Y +V+ FHS
Sbjct: 158 H-CDPKVLCIINPGNPTGQVQSRKCIEDVIHFAWEEKLFLLADEVYQDNVYSPDCRFHS 215
>ref|NP_597700.1| alanine aminotransferase 2 isoform 1 [Homo sapiens].
Length = 523
Score = 62.0 bits (149), Expect = 2e-09
Identities = 50/179 (27%), Positives = 81/179 (45%), Gaps = 4/179 (2%)
Frame = +3
Query: 687 SLLQYPDWRGHLFLREEVARFLSFYCKSPAPLKPENVVVLNGCASLFSALATVLCEAG-- 860
SL Y +G +RE+VA +++ P P+N+ + G + S + +L G
Sbjct: 146 SLGSYSASQGVNCIREDVAAYITRR-DGGVPADPDNIYLTTGASDGISTILKILVSGGGK 204
Query: 861 --EAFLIPAPYYGSITQHVCLYGGVRLVCVYLDSEVTGLETRPFQLTVEKLEMALQGANS 1034
+IP P Y + + ++ V YLD E + L V +L A+Q A
Sbjct: 205 SRTGVMIPIPQYPLYSAVISELDAIQ-VNYYLDEE------NCWALNVNELRRAVQEAKD 257
Query: 1035 EGVKVKGLILINPHNPLGDVYSLGELQEYLDFAKRHELHVIVDEIYLLSVFEKSVEFHS 1211
K L +INP NP G V S +++ + FA +L ++ DE+Y +V+ FHS
Sbjct: 258 H-CDPKVLCIINPGNPTGQVQSRKCIEDVIHFAWEEKLFLLADEVYQDNVYSPDCRFHS 315
>ref|NP_000344.1| tyrosine aminotransferase [Homo sapiens].
Length = 454
Score = 62.0 bits (149), Expect = 2e-09
Identities = 47/158 (29%), Positives = 78/158 (49%)
Frame = +3
Query: 714 GHLFLREEVARFLSFYCKSPAPLKPENVVVLNGCASLFSALATVLCEAGEAFLIPAPYYG 893
G L REE+A S+Y APL+ ++V++ +GC+ VL G+ L+P P +
Sbjct: 114 GFLSSREEIA---SYYHCPEAPLEAKDVILTSGCSQAIDLCLAVLANPGQNILVPRPGF- 169
Query: 894 SITQHVCLYGGVRLVCVYLDSEVTGLETRPFQLTVEKLEMALQGANSEGVKVKGLILINP 1073
S+ + + G+ + L L + +++ +++LE + K LI+ NP
Sbjct: 170 SLYKTLAESMGIEVKLYNL------LPEKSWEIDLKQLEYLIDE------KTACLIVNNP 217
Query: 1074 HNPLGDVYSLGELQEYLDFAKRHELHVIVDEIYLLSVF 1187
NP G V+S LQ+ L A R + ++ DEIY VF
Sbjct: 218 SNPCGSVFSKRHLQKILAVAARQCVPILADEIYGDMVF 255
>ref|NP_001008661.1| kynurenine--oxoglutarate transaminase 3 isoform 1 [Homo sapiens].
Length = 454
Score = 61.6 bits (148), Expect = 2e-09
Identities = 72/304 (23%), Positives = 122/304 (40%), Gaps = 9/304 (2%)
Frame = +3
Query: 687 SLLQYPDWRGHLFLREEVARFLSFYCKSPAPLKPENVVVLNGCASLFSALATVLCEAGEA 866
SL QY GH L + ++ + E +V + SLF+ + ++ E E
Sbjct: 93 SLNQYTRGFGHPSLVKALSYLYEKLYQKQIDSNKEILVTVGAYGSLFNTIQALIDEGDEV 152
Query: 867 FLIPAPYYGSITQHVCLYGGVRLVCVYLDSEVTGLETRPFQLTVEKLEMALQGANSEGVK 1046
LI P+Y V + G + V G T++ E+ + NS K
Sbjct: 153 ILI-VPFYDCYEPMVRMAGATPVFIPLRSKPVYGKRWSSSDWTLDPQELESK-FNS---K 207
Query: 1047 VKGLILINPHNPLGDVYSLGELQEYLDFAKRHELHVIVDEIYLLSVFEKSVEFHSVLSLE 1226
K +IL PHNPLG VY+ ELQ D +++ I DE+Y V+ + L +
Sbjct: 208 TKAIILNTPHNPLGKVYNREELQVIADLCIKYDTLCISDEVYEWLVYSGNKH----LKIA 263
Query: 1227 RLPDS-QRTHVMWAASKDFGMSGIRFGTLYTENRDVA-TAVASLCRYHSLSGLVQYQMAQ 1400
P +RT + +A K F ++G + G N + ++ + +Q +AQ
Sbjct: 264 TFPGMWERTITIGSAGKTFSVTGWKLGWSIGPNHLIKHLQTVQQNTIYTCATPLQEALAQ 323
Query: 1401 LFRDRNWIN-------QVYLPENHARLKAAHTYVSEELRALGIPFLSRGAGFFIWANLGK 1559
F WI+ + Y L+ + L ++G+ + G+FI A++
Sbjct: 324 AF----WIDIKRMDDPECYFNSLPKELEVKRDRMVRLLESVGLKPIVPDGGYFIIADVSL 379
Query: 1560 YLPE 1571
P+
Sbjct: 380 LDPD 383
>ref|NP_001008662.1| kynurenine--oxoglutarate transaminase 3 isoform 2 [Homo sapiens].
Length = 420
Score = 61.6 bits (148), Expect = 2e-09
Identities = 72/304 (23%), Positives = 122/304 (40%), Gaps = 9/304 (2%)
Frame = +3
Query: 687 SLLQYPDWRGHLFLREEVARFLSFYCKSPAPLKPENVVVLNGCASLFSALATVLCEAGEA 866
SL QY GH L + ++ + E +V + SLF+ + ++ E E
Sbjct: 59 SLNQYTRGFGHPSLVKALSYLYEKLYQKQIDSNKEILVTVGAYGSLFNTIQALIDEGDEV 118
Query: 867 FLIPAPYYGSITQHVCLYGGVRLVCVYLDSEVTGLETRPFQLTVEKLEMALQGANSEGVK 1046
LI P+Y V + G + V G T++ E+ + NS K
Sbjct: 119 ILI-VPFYDCYEPMVRMAGATPVFIPLRSKPVYGKRWSSSDWTLDPQELESK-FNS---K 173
Query: 1047 VKGLILINPHNPLGDVYSLGELQEYLDFAKRHELHVIVDEIYLLSVFEKSVEFHSVLSLE 1226
K +IL PHNPLG VY+ ELQ D +++ I DE+Y V+ + L +
Sbjct: 174 TKAIILNTPHNPLGKVYNREELQVIADLCIKYDTLCISDEVYEWLVYSGNKH----LKIA 229
Query: 1227 RLPDS-QRTHVMWAASKDFGMSGIRFGTLYTENRDVA-TAVASLCRYHSLSGLVQYQMAQ 1400
P +RT + +A K F ++G + G N + ++ + +Q +AQ
Sbjct: 230 TFPGMWERTITIGSAGKTFSVTGWKLGWSIGPNHLIKHLQTVQQNTIYTCATPLQEALAQ 289
Query: 1401 LFRDRNWIN-------QVYLPENHARLKAAHTYVSEELRALGIPFLSRGAGFFIWANLGK 1559
F WI+ + Y L+ + L ++G+ + G+FI A++
Sbjct: 290 AF----WIDIKRMDDPECYFNSLPKELEVKRDRMVRLLESVGLKPIVPDGGYFIIADVSL 345
Query: 1560 YLPE 1571
P+
Sbjct: 346 LDPD 349
>ref|NP_001116143.1| kynurenine--oxoglutarate transaminase 1 isoform a [Homo sapiens].
Length = 422
Score = 53.9 bits (128), Expect = 5e-07
Identities = 43/172 (25%), Positives = 80/172 (46%), Gaps = 2/172 (1%)
Frame = +3
Query: 795 VVVLNGCASLFSALATVLCEAGEAFLIPAPYYGSITQHVCLYGGVRLVCVYLDSEVTGLE 974
+V + G +LF+A ++ E E +I P++ + GG + + E
Sbjct: 95 LVTVGGYGALFTAFQALVDEGDEVIIIE-PFFDCYEPMTMMAGGRPVFVSLKPGPIQNGE 153
Query: 975 T-RPFQLTVEKLEMALQGANSEGVKVKGLILINPHNPLGDVYSLGELQEYLDFAKRHELH 1151
++ +E+A + + + K L+L P+NPLG V+S EL+ ++H++
Sbjct: 154 LGSSSNWQLDPMELAGKFTS----RTKALVLNTPNNPLGKVFSREELELVASLCQQHDVV 209
Query: 1152 VIVDEIYLLSVFEKSVEFHSVLSLERLPDS-QRTHVMWAASKDFGMSGIRFG 1304
I DE+Y V++ H +S+ LP +RT + +A K F +G + G
Sbjct: 210 CITDEVYQWMVYDG----HQHISIASLPGMWERTLTIGSAGKTFSATGWKVG 257
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 76,577,886
Number of extensions: 2401083
Number of successful extensions: 12537
Number of sequences better than 1.0e-05: 12
Number of HSP's gapped: 12465
Number of HSP's successfully gapped: 12
Length of query: 591
Length of database: 18,297,164
Length adjustment: 108
Effective length of query: 483
Effective length of database: 14,737,052
Effective search space: 7117996116
Effective search space used: 7117996116
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-004200
(1775 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_899043.1| 1-aminocyclopropane-1-carboxylate synthase-like... 768 0.0
Alignment gi|NP_001028624.2| 1-aminocyclopropane-1-carboxylate synthase-l... 468 e-132
Alignment gi|NP_666326.1| tyrosine aminotransferase [Mus musculus]. 65 1e-10
Alignment gi|NP_776291.1| alanine aminotransferase 2 [Mus musculus]. 65 2e-10
Alignment gi|NP_776124.1| kynurenine--oxoglutarate transaminase 3 [Mus mu... 64 3e-10
Alignment gi|NP_877957.1| alanine aminotransferase 1 [Mus musculus]. 52 2e-06
>ref|NP_899043.1| 1-aminocyclopropane-1-carboxylate synthase-like protein 1 [Mus
musculus].
Length = 479
Score = 768 bits (1983), Expect = 0.0
Identities = 376/466 (80%), Positives = 412/466 (88%)
Frame = +3
Query: 372 LHSSNGDDVERECSRKPDQKPLKCYRVGDPTAMFSPNSPHLSSRGSVIKWFWDSAEEGYR 551
+ S GD ++ EC RKPDQ K Y VGDPTA FS +S LSSRG VIKWFWDSAEEGYR
Sbjct: 1 MDSGYGDGLQGECLRKPDQTQPKLYGVGDPTATFSSDSSCLSSRGRVIKWFWDSAEEGYR 60
Query: 552 TYHMDEYDEDKNPNGIINLGTSENKLCFDLLTRRLSQSDMLWVEPSLLQYPDWRGHLFLR 731
TYHMDEYDEDKNP+GIINLGTSENKLCFDLL+ RL+Q DML VEPSLLQYPDWRGHLFLR
Sbjct: 61 TYHMDEYDEDKNPSGIINLGTSENKLCFDLLSWRLTQGDMLHVEPSLLQYPDWRGHLFLR 120
Query: 732 EEVARFLSFYCKSPAPLKPENVVVLNGCASLFSALATVLCEAGEAFLIPAPYYGSITQHV 911
EEVA+FLSFYCKSPAPLKPENVVVLNGCASLFSALATVLCEAGEA LIP PYYG+ITQH+
Sbjct: 121 EEVAKFLSFYCKSPAPLKPENVVVLNGCASLFSALATVLCEAGEALLIPTPYYGAITQHI 180
Query: 912 CLYGGVRLVCVYLDSEVTGLETRPFQLTVEKLEMALQGANSEGVKVKGLILINPHNPLGD 1091
LYG VRL VYLDS+VTGL TRPFQLTVEKLEM LQG +SEGVKVKGLILINP NPLGD
Sbjct: 181 YLYGNVRLAYVYLDSKVTGLNTRPFQLTVEKLEMVLQGVSSEGVKVKGLILINPQNPLGD 240
Query: 1092 VYSLGELQEYLDFAKRHELHVIVDEIYLLSVFEKSVEFHSVLSLERLPDSQRTHVMWAAS 1271
VYS ELQ++L FA RH+LHVI+DE+Y+LSVFE+S+ + SVLSLERLPD QRTHVMWA S
Sbjct: 241 VYSPEELQDFLRFAMRHKLHVIMDEVYMLSVFEESLGYRSVLSLERLPDPQRTHVMWATS 300
Query: 1272 KDFGMSGIRFGTLYTENRDVATAVASLCRYHSLSGLVQYQMAQLFRDRNWINQVYLPENH 1451
KDFGMSG+RFG LYTEN+ VATAVASLCRYH LSGLVQ+QMAQL RD +WI+QVYLPENH
Sbjct: 301 KDFGMSGLRFGVLYTENQHVATAVASLCRYHGLSGLVQHQMAQLLRDHDWISQVYLPENH 360
Query: 1452 ARLKAAHTYVSEELRALGIPFLSRGAGFFIWANLGKYLPEATFEQEMLLWRRFLDNKVLL 1631
ARLKAAHTYVSEELRALGIPF+SRGAGFFIW +L KYL + TFE+E LLWR+FLDNKVLL
Sbjct: 361 ARLKAAHTYVSEELRALGIPFVSRGAGFFIWVDLRKYLCKGTFEEEALLWRQFLDNKVLL 420
Query: 1632 SFGKAFECKEPGWFRLVFSDRMHRLRLGMHRVRQVLESESQVAADA 1769
S GK FECKEPGWFR+VFSD+ +RLRLGM R+RQVLE +SQV DA
Sbjct: 421 SSGKTFECKEPGWFRVVFSDKENRLRLGMQRMRQVLEGQSQVVEDA 466
>ref|NP_001028624.2| 1-aminocyclopropane-1-carboxylate synthase-like protein 2 [Mus
musculus].
Length = 580
Score = 468 bits (1203), Expect = e-132
Identities = 226/416 (54%), Positives = 303/416 (72%)
Frame = +3
Query: 492 LSSRGSVIKWFWDSAEEGYRTYHMDEYDEDKNPNGIINLGTSENKLCFDLLTRRLSQSDM 671
LS RG+ I + + + Y Y D+Y +DKNP+G INL TSENKLC DL+T RL+QSDM
Sbjct: 157 LSKRGAGIYESYHLSFQSYEAYQADKYHKDKNPSGYINLSTSENKLCLDLITARLTQSDM 216
Query: 672 LWVEPSLLQYPDWRGHLFLREEVARFLSFYCKSPAPLKPENVVVLNGCASLFSALATVLC 851
++ + LQY DW+G FLREE+A FL+ YCK+P PL PENVVVLNGC+S+F++LA VLC
Sbjct: 217 NLLDEAQLQYSDWKGQPFLREELASFLTHYCKAPTPLDPENVVVLNGCSSVFASLAMVLC 276
Query: 852 EAGEAFLIPAPYYGSITQHVCLYGGVRLVCVYLDSEVTGLETRPFQLTVEKLEMALQGAN 1031
+ G+A LIP P Y LY + L+ V+L+S+V FQLTV+KL++AL A
Sbjct: 277 DPGDALLIPTPCYNGFVFSSHLYSKIELIPVHLESQVPRSNLDSFQLTVDKLKLALTQAK 336
Query: 1032 SEGVKVKGLILINPHNPLGDVYSLGELQEYLDFAKRHELHVIVDEIYLLSVFEKSVEFHS 1211
+ KVKGL+LINP NPLGDVY+ LQEYL FAK H+LHVI+DEIY+LSVFE SV FHS
Sbjct: 337 KKAKKVKGLVLINPQNPLGDVYTQSSLQEYLVFAKTHKLHVIMDEIYMLSVFEPSVTFHS 396
Query: 1212 VLSLERLPDSQRTHVMWAASKDFGMSGIRFGTLYTENRDVATAVASLCRYHSLSGLVQYQ 1391
VLS++ LPD TH++W SKDFGMSGIRFG LYT N++VA+A+ + +H +SG+ QY+
Sbjct: 397 VLSIKDLPDPNMTHMIWGTSKDFGMSGIRFGVLYTHNKEVASAMKAFGYHHGVSGITQYK 456
Query: 1392 MAQLFRDRNWINQVYLPENHARLKAAHTYVSEELRALGIPFLSRGAGFFIWANLGKYLPE 1571
+ +L +D+ WI++VYLP+NH+RL+ A++Y+++ L+ L IPF + G+G F+W NL YL
Sbjct: 457 LCRLLQDKEWISKVYLPKNHSRLQKAYSYITKILKDLKIPFYNGGSGLFVWINLKAYLSP 516
Query: 1572 ATFEQEMLLWRRFLDNKVLLSFGKAFECKEPGWFRLVFSDRMHRLRLGMHRVRQVL 1739
TF+QE +L +RF D K+LLS GK++ C EPGWFRLVF++ L++ M R VL
Sbjct: 517 CTFDQEQILHQRFRDKKLLLSSGKSYMCIEPGWFRLVFAETHLHLQVAMDRFCHVL 572
>ref|NP_666326.1| tyrosine aminotransferase [Mus musculus].
Length = 454
Score = 65.5 bits (158), Expect = 1e-10
Identities = 53/160 (33%), Positives = 79/160 (49%), Gaps = 2/160 (1%)
Frame = +3
Query: 714 GHLFLREEVARFLSFYCKSPAPLKPENVVVLNGCASLFSALATVLCEAGEAFLIPAPYYG 893
G+L REEVA S+Y APL+ ++V++ +GC+ VL G+ LIP P +
Sbjct: 114 GYLSSREEVA---SYYHCPEAPLEAKDVILTSGCSQAIELCLAVLANPGQNILIPRPGFS 170
Query: 894 SITQHVCLYGGVRLVCVYLDSEVTGLETRPFQLTVEKL-EMALQGANSE-GVKVKGLILI 1067
LY + +E G+E + + L EK E+ L+ S K L++
Sbjct: 171 -------LYRTL--------AESMGIEVKLYNLLPEKSWEIDLKQLESLIDEKTACLVVN 215
Query: 1068 NPHNPLGDVYSLGELQEYLDFAKRHELHVIVDEIYLLSVF 1187
NP NP G V+S LQ+ L A+R + ++ DEIY VF
Sbjct: 216 NPSNPCGSVFSKRHLQKILAVAERQCVPILADEIYGDMVF 255
>ref|NP_776291.1| alanine aminotransferase 2 [Mus musculus].
Length = 522
Score = 64.7 bits (156), Expect = 2e-10
Identities = 52/179 (29%), Positives = 83/179 (46%), Gaps = 4/179 (2%)
Frame = +3
Query: 687 SLLQYPDWRGHLFLREEVARFLSFYCKSPAPLKPENVVVLNGCASLFSALATVLCEAG-- 860
SL Y +G +RE+VA F++ + P P+N+ + G + S + +L G
Sbjct: 146 SLGSYSASQGVNCIREDVAAFITR--RDGVPADPDNIYLTTGASDGISTILKLLVSGGGK 203
Query: 861 --EAFLIPAPYYGSITQHVCLYGGVRLVCVYLDSEVTGLETRPFQLTVEKLEMALQGANS 1034
+IP P Y + + V+ V YLD E + L V++L AL+ A
Sbjct: 204 SRTGVMIPIPQYPLYSAVISELDAVQ-VNYYLDEE------NCWALNVDELRRALRQAKD 256
Query: 1035 EGVKVKGLILINPHNPLGDVYSLGELQEYLDFAKRHELHVIVDEIYLLSVFEKSVEFHS 1211
K L +INP NP G V S +++ + FA +L ++ DE+Y +V+ FHS
Sbjct: 257 H-CDPKVLCIINPGNPTGQVQSRKCIEDVIHFAWEEKLFLLADEVYQDNVYSPDCRFHS 314
>ref|NP_776124.1| kynurenine--oxoglutarate transaminase 3 [Mus musculus].
Length = 420
Score = 64.3 bits (155), Expect = 3e-10
Identities = 48/173 (27%), Positives = 81/173 (46%), Gaps = 1/173 (0%)
Frame = +3
Query: 789 ENVVVLNGCASLFSALATVLCEAGEAFLIPAPYYGSITQHVCLYGGVRLVCVYLDSEVTG 968
E +V + SLF+++ L + G+ +I P+Y V + G V + G
Sbjct: 93 EILVAVGAYGSLFNSIQG-LVDPGDEVIIMVPFYDCYEPMVRMAGAVPVFIPLRSKPTDG 151
Query: 969 LETRPFQLTVEKLEMALQGANSEGVKVKGLILINPHNPLGDVYSLGELQEYLDFAKRHEL 1148
++ T + E+ + ++ K K +IL PHNPLG VY+ ELQ D +H+
Sbjct: 152 MKWTSSDWTFDPRELESKFSS----KTKAIILNTPHNPLGKVYTRQELQVIADLCVKHDT 207
Query: 1149 HVIVDEIYLLSVFEKSVEFHSVLSLERLPDS-QRTHVMWAASKDFGMSGIRFG 1304
I DE+Y V+ H+ + + LP +RT + +A K F ++G + G
Sbjct: 208 LCISDEVYEWLVYTG----HTHVKIATLPGMWERTITIGSAGKTFSVTGWKLG 256
>ref|NP_877957.1| alanine aminotransferase 1 [Mus musculus].
Length = 496
Score = 51.6 bits (122), Expect = 2e-06
Identities = 47/167 (28%), Positives = 76/167 (45%), Gaps = 5/167 (2%)
Frame = +3
Query: 726 LREEVARFLSFYCKSPAPLKPENVVVLNGCASLFSALATVLCEAGEA-----FLIPAPYY 890
+RE+VA+++ P P N+ + G + + +L AGE LIP P Y
Sbjct: 132 IREDVAQYIERR-DGGIPADPNNIFLSTGASDAIVTMLKLLV-AGEGRARTGVLIPIPQY 189
Query: 891 GSITQHVCLYGGVRLVCVYLDSEVTGLETRPFQLTVEKLEMALQGANSEGVKVKGLILIN 1070
+ + V+ V YLD E R + L + +L AL A + L +IN
Sbjct: 190 PLYSAALAELDAVQ-VDYYLDEE------RAWALDIAELRRALCQARDRCCP-RVLCVIN 241
Query: 1071 PHNPLGDVYSLGELQEYLDFAKRHELHVIVDEIYLLSVFEKSVEFHS 1211
P NP G V + ++ + FA L ++ DE+Y +V+ + +FHS
Sbjct: 242 PGNPTGQVQTRECIEAVIRFAFEEGLFLMADEVYQDNVYAEGSQFHS 288
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 64,531,120
Number of extensions: 1984171
Number of successful extensions: 9611
Number of sequences better than 1.0e-05: 6
Number of HSP's gapped: 9519
Number of HSP's successfully gapped: 6
Length of query: 591
Length of database: 15,617,559
Length adjustment: 107
Effective length of query: 484
Effective length of database: 12,403,707
Effective search space: 6003394188
Effective search space used: 6003394188
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-004200
(1775 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_003122900.1| PREDICTED: 1-aminocyclopropane-1-carboxylate... 1001 0.0
Alignment gi|XP_003122901.1| PREDICTED: 1-aminocyclopropane-1-carboxylate... 501 e-142
Alignment gi|XP_001929419.2| PREDICTED: kynurenine--oxoglutarate transami... 70 4e-12
Alignment gi|XP_003125974.1| PREDICTED: kynurenine--oxoglutarate transami... 70 4e-12
Alignment gi|XP_003127043.1| PREDICTED: alanine aminotransferase 2 [Sus s... 62 1e-09
Alignment gi|XP_003125488.1| PREDICTED: alanine aminotransferase 1-like [... 61 2e-09
Alignment gi|XP_003122257.1| PREDICTED: kynurenine--oxoglutarate transami... 54 3e-07
Alignment gi|XP_003353726.1| PREDICTED: kynurenine--oxoglutarate transami... 50 4e-06
>ref|XP_003122900.1| PREDICTED: 1-aminocyclopropane-1-carboxylate synthase-like protein
1-like [Sus scrofa].
Length = 506
Score = 1001 bits (2587), Expect = 0.0
Identities = 489/491 (99%), Positives = 490/491 (99%)
Frame = +3
Query: 303 MSTLCQKETRTPATCLGSGSTQGLHSSNGDDVERECSRKPDQKPLKCYRVGDPTAMFSPN 482
MSTLCQKETRTPATCLGSGSTQGLHSSNGDDVERECSRKPDQKPLKCYRVGDPTAMFSPN
Sbjct: 1 MSTLCQKETRTPATCLGSGSTQGLHSSNGDDVERECSRKPDQKPLKCYRVGDPTAMFSPN 60
Query: 483 SPHLSSRGSVIKWFWDSAEEGYRTYHMDEYDEDKNPNGIINLGTSENKLCFDLLTRRLSQ 662
SPHLSSRGSVIKWFWDSAEEGYRTYHMDEYDEDKNPNGIINLGTSENKLCFDLLTRRLSQ
Sbjct: 61 SPHLSSRGSVIKWFWDSAEEGYRTYHMDEYDEDKNPNGIINLGTSENKLCFDLLTRRLSQ 120
Query: 663 SDMLWVEPSLLQYPDWRGHLFLREEVARFLSFYCKSPAPLKPENVVVLNGCASLFSALAT 842
SDMLWVEPSLLQYPDWRGHLFLREEVARFLSFYCKSPAPLKPENVVVLNGCASLFSALAT
Sbjct: 121 SDMLWVEPSLLQYPDWRGHLFLREEVARFLSFYCKSPAPLKPENVVVLNGCASLFSALAT 180
Query: 843 VLCEAGEAFLIPAPYYGSITQHVCLYGGVRLVCVYLDSEVTGLETRPFQLTVEKLEMALQ 1022
VLCEAGEAFLIPAPYYGSITQHVCLYGGVRLVCVYLDSEVTGLETRPFQLTVEKLEMALQ
Sbjct: 181 VLCEAGEAFLIPAPYYGSITQHVCLYGGVRLVCVYLDSEVTGLETRPFQLTVEKLEMALQ 240
Query: 1023 GANSEGVKVKGLILINPHNPLGDVYSLGELQEYLDFAKRHELHVIVDEIYLLSVFEKSVE 1202
GANSEGVKVKGLILINPHNPLGDVYSLGELQEYLDFAKRHELHVIVDEIYLLSVFEKSVE
Sbjct: 241 GANSEGVKVKGLILINPHNPLGDVYSLGELQEYLDFAKRHELHVIVDEIYLLSVFEKSVE 300
Query: 1203 FHSVLSLERLPDSQRTHVMWAASKDFGMSGIRFGTLYTENRDVATAVASLCRYHSLSGLV 1382
FHSVLSLERLPDSQRTHVMWAASKDFGMSGIRFGTLYTENRDVATAVASLCRYHSLSGLV
Sbjct: 301 FHSVLSLERLPDSQRTHVMWAASKDFGMSGIRFGTLYTENRDVATAVASLCRYHSLSGLV 360
Query: 1383 QYQMAQLFRDRNWINQVYLPENHARLKAAHTYVSEELRALGIPFLSRGAGFFIWANLGKY 1562
QYQMAQLFRDR+WINQVYLPENHARLKAAHTYVSEELRALGIPFLSRGAGFFIWANLGKY
Sbjct: 361 QYQMAQLFRDRDWINQVYLPENHARLKAAHTYVSEELRALGIPFLSRGAGFFIWANLGKY 420
Query: 1563 LPEATFEQEMLLWRRFLDNKVLLSFGKAFECKEPGWFRLVFSDRMHRLRLGMHRVRQVLE 1742
LPEATFEQEMLLWRRFLDNKVLLSFGKAFECKEPGWFRLVFSDRMHRLRLGM RVRQVLE
Sbjct: 421 LPEATFEQEMLLWRRFLDNKVLLSFGKAFECKEPGWFRLVFSDRMHRLRLGMQRVRQVLE 480
Query: 1743 SESQVAADAPS 1775
SESQVAADAPS
Sbjct: 481 SESQVAADAPS 491
>ref|XP_003122901.1| PREDICTED: 1-aminocyclopropane-1-carboxylate synthase-like protein 2
[Sus scrofa].
Length = 570
Score = 501 bits (1289), Expect = e-142
Identities = 243/419 (57%), Positives = 309/419 (73%)
Frame = +3
Query: 483 SPHLSSRGSVIKWFWDSAEEGYRTYHMDEYDEDKNPNGIINLGTSENKLCFDLLTRRLSQ 662
S LSSRG I + S+ + Y TY ++YD+ N G INLGTSENKLC DLLT RL +
Sbjct: 119 SSDLSSRGLDISSLYHSSFQDYNTYQGNKYDKKNNTLGFINLGTSENKLCIDLLTERLRR 178
Query: 663 SDMLWVEPSLLQYPDWRGHLFLREEVARFLSFYCKSPAPLKPENVVVLNGCASLFSALAT 842
SDM +V+ +LLQYPDWRG FLR+EVA+FL+ YCK+PA L PENVVVLN C+S+ S+LA
Sbjct: 179 SDMNYVDDNLLQYPDWRGQPFLRKEVAQFLTTYCKAPAHLDPENVVVLNSCSSVLSSLAM 238
Query: 843 VLCEAGEAFLIPAPYYGSITQHVCLYGGVRLVCVYLDSEVTGLETRPFQLTVEKLEMALQ 1022
VLC+ GEAFL+P P+ CLY V L+ V+LDS V+G T PFQL+V KLE L
Sbjct: 239 VLCDPGEAFLVPTPFSSGFIFSACLYAKVELLPVHLDSWVSGANTSPFQLSVGKLEQVLF 298
Query: 1023 GANSEGVKVKGLILINPHNPLGDVYSLGELQEYLDFAKRHELHVIVDEIYLLSVFEKSVE 1202
A EG KV+GL+L NP NPLGDVYS L +YL+FAKR+ LHVI+DEIY+L+VF++++
Sbjct: 299 EAKMEGKKVRGLLLTNPQNPLGDVYSRDSLMDYLEFAKRYHLHVIIDEIYMLTVFDEAIT 358
Query: 1203 FHSVLSLERLPDSQRTHVMWAASKDFGMSGIRFGTLYTENRDVATAVASLCRYHSLSGLV 1382
FHSVLS+E LPD +THV+W SKDFG+SG+ FG LYT N+ VA+AV+S HS+S +
Sbjct: 359 FHSVLSIESLPDPSKTHVIWGTSKDFGISGLCFGALYTFNKAVASAVSSFGSLHSISSIA 418
Query: 1383 QYQMAQLFRDRNWINQVYLPENHARLKAAHTYVSEELRALGIPFLSRGAGFFIWANLGKY 1562
QY++ QL +DR W++ YLP NH RL+ AH Y++ EL+AL +PFL+RG+G F+W NL KY
Sbjct: 419 QYKLRQLLQDREWLDSTYLPINHFRLRTAHKYITNELKALNVPFLNRGSGLFVWINLRKY 478
Query: 1563 LPEATFEQEMLLWRRFLDNKVLLSFGKAFECKEPGWFRLVFSDRMHRLRLGMHRVRQVL 1739
L TFE+E+LL R FLD K++LS GK+F CK+PGWFRLVF+D LR MHR QVL
Sbjct: 479 LHPCTFEEELLLHRHFLDKKLILSPGKSFMCKDPGWFRLVFADNHLLLRSAMHRFHQVL 537
>ref|XP_001929419.2| PREDICTED: kynurenine--oxoglutarate transaminase 3 isoform 1 [Sus
scrofa].
Length = 453
Score = 70.1 bits (170), Expect = 4e-12
Identities = 62/208 (29%), Positives = 96/208 (46%), Gaps = 2/208 (0%)
Frame = +3
Query: 687 SLLQYPDWRGHLFLREEVA-RFLSFYCKSPAPLKPENVVVLNGCASLFSALATVLCEAGE 863
S+ QY GHL L + ++ + FY K P + E VV + SLF+A+ + E G+
Sbjct: 91 SMNQYTRGFGHLSLVKALSCLYGKFYQKQINPTE-EIVVTVGAYGSLFNAIQGFI-EEGD 148
Query: 864 AFLIPAPYYGSITQHVCLYGGVRLVCVYLDSEVTGLETRPFQLTVEKLEMALQGANSEGV 1043
++ P+Y V + GG + V G T++ E+A + NS
Sbjct: 149 EVIVMVPFYDCYGPMVSMAGGTPVFVPLRSKPVDGKRWCSSDWTLDPQELASK-FNS--- 204
Query: 1044 KVKGLILINPHNPLGDVYSLGELQEYLDFAKRHELHVIVDEIYLLSVFEKSVEFHSVLSL 1223
K K +IL PHNPLG V++ ELQ D +H+ I DE+Y V+ F +
Sbjct: 205 KTKAIILNTPHNPLGKVFTREELQVIADLCIKHDTLCISDEVYEWIVYTGKKHF----KI 260
Query: 1224 ERLPDS-QRTHVMWAASKDFGMSGIRFG 1304
P +RT + +A K F ++G + G
Sbjct: 261 ATFPGMWERTITIGSAGKTFSVTGWKLG 288
>ref|XP_003125974.1| PREDICTED: kynurenine--oxoglutarate transaminase 3 isoform 2 [Sus
scrofa].
Length = 453
Score = 70.1 bits (170), Expect = 4e-12
Identities = 62/208 (29%), Positives = 96/208 (46%), Gaps = 2/208 (0%)
Frame = +3
Query: 687 SLLQYPDWRGHLFLREEVA-RFLSFYCKSPAPLKPENVVVLNGCASLFSALATVLCEAGE 863
S+ QY GHL L + ++ + FY K P + E VV + SLF+A+ + E G+
Sbjct: 91 SMNQYTRGFGHLSLVKALSCLYGKFYQKQINPTE-EIVVTVGAYGSLFNAIQGFI-EEGD 148
Query: 864 AFLIPAPYYGSITQHVCLYGGVRLVCVYLDSEVTGLETRPFQLTVEKLEMALQGANSEGV 1043
++ P+Y V + GG + V G T++ E+A + NS
Sbjct: 149 EVIVMVPFYDCYGPMVSMAGGTPVFVPLRSKPVDGKRWCSSDWTLDPQELASK-FNS--- 204
Query: 1044 KVKGLILINPHNPLGDVYSLGELQEYLDFAKRHELHVIVDEIYLLSVFEKSVEFHSVLSL 1223
K K +IL PHNPLG V++ ELQ D +H+ I DE+Y V+ F +
Sbjct: 205 KTKAIILNTPHNPLGKVFTREELQVIADLCIKHDTLCISDEVYEWIVYTGKKHF----KI 260
Query: 1224 ERLPDS-QRTHVMWAASKDFGMSGIRFG 1304
P +RT + +A K F ++G + G
Sbjct: 261 ATFPGMWERTITIGSAGKTFSVTGWKLG 288
>ref|XP_003127043.1| PREDICTED: alanine aminotransferase 2 [Sus scrofa].
Length = 523
Score = 62.0 bits (149), Expect = 1e-09
Identities = 50/179 (27%), Positives = 83/179 (46%), Gaps = 4/179 (2%)
Frame = +3
Query: 687 SLLQYPDWRGHLFLREEVARFLSFYCKSPAPLKPENVVVLNGCASLFSALATVLCEAG-- 860
SL Y +G +RE+VA +++ P P+N+ + G + S + +L G
Sbjct: 146 SLGSYSASQGVNCIREDVAAYITRR-DGGVPADPDNIYLTTGASDGISTILKILVSGGGK 204
Query: 861 --EAFLIPAPYYGSITQHVCLYGGVRLVCVYLDSEVTGLETRPFQLTVEKLEMALQGANS 1034
+IP P Y + + ++ V YLD E + L V +L A++ A
Sbjct: 205 SRTGVMIPIPQYPLYSAVISELDAIQ-VNYYLD------EDNCWALNVNELRRAVRQAK- 256
Query: 1035 EGVKVKGLILINPHNPLGDVYSLGELQEYLDFAKRHELHVIVDEIYLLSVFEKSVEFHS 1211
E K L +INP NP G V S +++ + FA +L ++ DE+Y +V+ +FHS
Sbjct: 257 EHCNPKVLCIINPGNPTGQVQSRKCIEDVIHFAWEEKLFLLADEVYQDNVYSPDCKFHS 315
>ref|XP_003125488.1| PREDICTED: alanine aminotransferase 1-like [Sus scrofa].
Length = 512
Score = 60.8 bits (146), Expect = 2e-09
Identities = 64/226 (28%), Positives = 98/226 (43%), Gaps = 10/226 (4%)
Frame = +3
Query: 687 SLLQYPDWRGHLFLREEVARFLSFYCKSPAPLKPENVVVLNGCASLFSALATVLC----E 854
SL Y G +RE+VAR++ P P N+ + G + + +L
Sbjct: 135 SLGAYSISPGIQMIREDVARYIERR-DGGIPADPNNIFLSTGASDAIVTVLKLLVFGEGR 193
Query: 855 AGEAFLIPAPYYGSITQHVCLYGGVRLVCVYLDSEVTGLETRPFQLTVEKLEMALQGANS 1034
LIP P Y + + V+ V YLD E R + L V +L AL+ A
Sbjct: 194 TRTGVLIPIPQYPLYSAALAELNAVQ-VDYYLDEE------RAWALDVAELRRALRQARD 246
Query: 1035 EGVKVKGLILINPHNPLGDVYSLGELQEYLDFAKRHELHVIVDEIYLLSVFEKSVEFHS- 1211
+ + L +INP NP G V + ++ + FA L ++ DE+Y +V+ + +FHS
Sbjct: 247 H-CRPRALCVINPGNPTGQVQTRECIEAVIRFAYEEGLFLLADEVYQDNVYAEGSQFHSF 305
Query: 1212 --VLSLERLPDSQRTHV--MWAASKDF-GMSGIRFGTLYTENRDVA 1334
VL+ P + R + + SK F G G R G + N D A
Sbjct: 306 KKVLTEMGPPYAARQELASFHSVSKGFMGECGFRGGYVEVVNMDAA 351
>ref|XP_003122257.1| PREDICTED: kynurenine--oxoglutarate transaminase 1 isoform 1 [Sus
scrofa].
Length = 458
Score = 53.9 bits (128), Expect = 3e-07
Identities = 66/268 (24%), Positives = 122/268 (45%), Gaps = 13/268 (4%)
Frame = +3
Query: 777 PLKPENVVVLNGC-ASLFSALATVLCEAGEAFLIPAPYYGSITQHVCLYGGVRLVCVYLD 953
PLK NV+V G +LF+A ++ E E +I P++ + GG+ +
Sbjct: 124 PLK--NVLVTVGAYGALFTAFQALVDEGDEVIIIE-PFFDCYEPMTLMAGGLPVFVSLKP 180
Query: 954 SEVTGLE---TRPFQLTVEKLEMALQGANSEGVKVKGLILINPHNPLGDVYSLGELQEYL 1124
S E + +QL +L A+ + K L+L P+NPLG V+S EL+
Sbjct: 181 SPAQDGELDSSSNWQLDPMEL------ASKFTPRTKALVLNTPNNPLGKVFSKPELELVA 234
Query: 1125 DFAKRHELHVIVDEIYLLSVFEKSVEFHSVLSLERLPDS-QRTHVMWAASKDFGMSGIRF 1301
++H++ I DE+Y V+++ + +S+ LP +RT + +A K F +G +
Sbjct: 235 SLCQQHDVVCIADEVYQWLVYDQ----YQHISIASLPGMWERTLTVGSAGKTFSATGWKV 290
Query: 1302 G------TLYTENRDVATAVASLCRYHSLSGLVQ-YQMAQLFRDRNWINQVYLPENHARL 1460
G L R V C + + + Q ++ QL + V LP+ +
Sbjct: 291 GWVLGPDRLLRHLRTVHQNSVFHCPTQAQAAVAQSFEREQLHFGQPSSYFVQLPQ---AV 347
Query: 1461 KAAHTYVSEELRALGI-PFLSRGAGFFI 1541
+ + ++ + L+++G+ P + +G+ F I
Sbjct: 348 QRSRDHMVQSLQSVGLRPIVPQGSYFLI 375
>ref|XP_003353726.1| PREDICTED: kynurenine--oxoglutarate transaminase 1 [Sus scrofa].
Length = 374
Score = 50.1 bits (118), Expect = 4e-06
Identities = 44/175 (25%), Positives = 85/175 (48%), Gaps = 9/175 (5%)
Frame = +3
Query: 1044 KVKGLILINPHNPLGDVYSLGELQEYLDFAKRHELHVIVDEIYLLSVFEKSVEFHSVLSL 1223
+ K L+L P+NPLG V+S EL+ ++H++ I DE+Y V+++ + +S+
Sbjct: 124 RTKALVLNTPNNPLGKVFSKPELELVASLCQQHDVVCIADEVYQWLVYDQ----YQHISI 179
Query: 1224 ERLPDS-QRTHVMWAASKDFGMSGIRFG------TLYTENRDVATAVASLCRYHSLSGLV 1382
LP +RT + +A K F +G + G L R V C + + +
Sbjct: 180 ASLPGMWERTLTVGSAGKTFSATGWKVGWVLGPDRLLRHLRTVHQNSVFHCPTQAQAAVA 239
Query: 1383 Q-YQMAQLFRDRNWINQVYLPENHARLKAAHTYVSEELRALGI-PFLSRGAGFFI 1541
Q ++ QL + V LP+ ++ + ++ + L+++G+ P + +G+ F I
Sbjct: 240 QSFEREQLHFGQPSSYFVQLPQ---AVQRSRDHMVQSLQSVGLRPIVPQGSYFLI 291
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 48,487,924
Number of extensions: 1547920
Number of successful extensions: 8390
Number of sequences better than 1.0e-05: 8
Number of HSP's gapped: 8190
Number of HSP's successfully gapped: 8
Length of query: 591
Length of database: 11,343,932
Length adjustment: 105
Effective length of query: 486
Effective length of database: 8,729,747
Effective search space: 4242657042
Effective search space used: 4242657042
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-004200
(1775 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr02 599 e-168
>Sscrofa_Chr02
|| Length = 162569375
Score = 599 bits (302), Expect = e-168
Identities = 302/302 (100%)
Strand = Plus / Minus
Query: 1 cctccccttccccggcctcccctccggcttgggcggccagtggcgtggcgggttcccgga 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 19877379 cctccccttccccggcctcccctccggcttgggcggccagtggcgtggcgggttcccgga 19877320
Query: 61 gggaggcgagaaagaacgtgggtcccgcggtgcagccgagtgtctgcctcctgcgccgca 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 19877319 gggaggcgagaaagaacgtgggtcccgcggtgcagccgagtgtctgcctcctgcgccgca 19877260
Query: 121 ggtcataaacgggcgtcctgcggccttgggcgccaattagcgaactgcgccccgaacctt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 19877259 ggtcataaacgggcgtcctgcggccttgggcgccaattagcgaactgcgccccgaacctt 19877200
Query: 181 ccagaaagcccgactgggcgcggacggccccgactcacagcgtgggagggggaggccagt 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 19877199 ccagaaagcccgactgggcgcggacggccccgactcacagcgtgggagggggaggccagt 19877140
Query: 241 gaggactcggacctagagcgcctgtcccccgagtgccagcgccggctcctccagctccgc 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 19877139 gaggactcggacctagagcgcctgtcccccgagtgccagcgccggctcctccagctccgc 19877080
Query: 301 aa 302
||
Sbjct: 19877079 aa 19877078
Score = 579 bits (292), Expect = e-162
Identities = 292/292 (100%)
Strand = Plus / Minus
Query: 303 atgtccaccctctgtcagaaggaaaccaggacacctgccacctgtctgggatcaggctcc 362
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 19874439 atgtccaccctctgtcagaaggaaaccaggacacctgccacctgtctgggatcaggctcc 19874380
Query: 363 acacagggcctgcacagtagcaatggggatgatgtggaaagagaatgctccagaaaacca 422
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 19874379 acacagggcctgcacagtagcaatggggatgatgtggaaagagaatgctccagaaaacca 19874320
Query: 423 gaccagaagccactgaagtgctatagagtgggtgatcccaccgccatgttctcccccaac 482
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 19874319 gaccagaagccactgaagtgctatagagtgggtgatcccaccgccatgttctcccccaac 19874260
Query: 483 agcccccacctgtcctctagaggaagcgtcatcaaatggttctgggattcagccgaggaa 542
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 19874259 agcccccacctgtcctctagaggaagcgtcatcaaatggttctgggattcagccgaggaa 19874200
Query: 543 ggctacaggacctaccacatggatgagtatgatgaggataagaaccccaatg 594
||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 19874199 ggctacaggacctaccacatggatgagtatgatgaggataagaaccccaatg 19874148
Score = 311 bits (157), Expect = 7e-82
Identities = 157/157 (100%)
Strand = Plus / Minus
Query: 1558 agtatctgcccgaggccacctttgagcaggagatgctgctctggcgccgctttttggata 1617
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 19859389 agtatctgcccgaggccacctttgagcaggagatgctgctctggcgccgctttttggata 19859330
Query: 1618 acaaggtgctgctgtcctttggcaaagccttcgagtgcaaagagcccggctggttccgct 1677
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 19859329 acaaggtgctgctgtcctttggcaaagccttcgagtgcaaagagcccggctggttccgct 19859270
Query: 1678 tggtcttctccgacaggatgcaccggcttcgcctggg 1714
|||||||||||||||||||||||||||||||||||||
Sbjct: 19859269 tggtcttctccgacaggatgcaccggcttcgcctggg 19859233
Score = 283 bits (143), Expect = 2e-73
Identities = 143/143 (100%)
Strand = Plus / Minus
Query: 1273 aggacttcgggatgtctgggatccgcttcggcacgctgtacacagaaaaccgggacgtcg 1332
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 19861909 aggacttcgggatgtctgggatccgcttcggcacgctgtacacagaaaaccgggacgtcg 19861850
Query: 1333 ccactgcggtggcctccctctgccgctatcacagcctcagtggcttggtccagtaccaga 1392
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 19861849 ccactgcggtggcctccctctgccgctatcacagcctcagtggcttggtccagtaccaga 19861790
Query: 1393 tggcacagctgttccgggaccgt 1415
|||||||||||||||||||||||
Sbjct: 19861789 tggcacagctgttccgggaccgt 19861767
Score = 276 bits (139), Expect = 4e-71
Identities = 142/143 (99%)
Strand = Plus / Minus
Query: 1417 actggatcaaccaagtgtacctgccggaaaaccacgcccggctcaaggctgcccacacct 1476
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 19859621 actggatcaaccaagtgtacctgccagaaaaccacgcccggctcaaggctgcccacacct 19859562
Query: 1477 atgtctcagaagagctccgggccctggggatcccctttctgagccgtggggccggcttct 1536
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 19859561 atgtctcagaagagctccgggccctggggatcccctttctgagccgtggggccggcttct 19859502
Query: 1537 tcatctgggccaacttggggaag 1559
|||||||||||||||||||||||
Sbjct: 19859501 tcatctgggccaacttggggaag 19859479
Score = 206 bits (104), Expect = 3e-50
Identities = 104/104 (100%)
Strand = Plus / Minus
Query: 1036 agggtgtgaaagtcaaaggcctcatcctcatcaacccccacaaccccctgggtgacgtct 1095
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 19863516 agggtgtgaaagtcaaaggcctcatcctcatcaacccccacaaccccctgggtgacgtct 19863457
Query: 1096 actccctgggggagctgcaggagtacctggactttgccaagagg 1139
||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 19863456 actccctgggggagctgcaggagtacctggactttgccaagagg 19863413
Score = 200 bits (101), Expect = 2e-48
Identities = 101/101 (100%)
Strand = Plus / Minus
Query: 861 gaggccttcctgatccctgccccttactacggatccatcacgcagcatgtgtgtctctac 920
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 19865222 gaggccttcctgatccctgccccttactacggatccatcacgcagcatgtgtgtctctac 19865163
Query: 921 ggcggtgtccggctggtctgcgtctatctggacagtgaggt 961
|||||||||||||||||||||||||||||||||||||||||
Sbjct: 19865162 ggcggtgtccggctggtctgcgtctatctggacagtgaggt 19865122
Score = 184 bits (93), Expect = 1e-43
Identities = 93/93 (100%)
Strand = Plus / Minus
Query: 1137 aggcatgagctgcacgtgatagtggatgagatctacctgctttcggtgtttgagaagtcg 1196
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 19862791 aggcatgagctgcacgtgatagtggatgagatctacctgctttcggtgtttgagaagtcg 19862732
Query: 1197 gttgagttccacagtgtcctgagcctggaaagg 1229
|||||||||||||||||||||||||||||||||
Sbjct: 19862731 gttgagttccacagtgtcctgagcctggaaagg 19862699
Score = 161 bits (81), Expect = 2e-36
Identities = 81/81 (100%)
Strand = Plus / Minus
Query: 958 aggtcactgggctggagacacgtcccttccagctcacagtggagaagctggagatggcct 1017
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 19864607 aggtcactgggctggagacacgtcccttccagctcacagtggagaagctggagatggcct 19864548
Query: 1018 tgcaaggagctaattctgagg 1038
|||||||||||||||||||||
Sbjct: 19864547 tgcaaggagctaattctgagg 19864527
Score = 145 bits (73), Expect = 1e-31
Identities = 73/73 (100%)
Strand = Plus / Minus
Query: 725 cctccgggaggaagtggccaggttcctgtctttctactgcaagagccctgcaccccttaa 784
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 19868062 cctccgggaggaagtggccaggttcctgtctttctactgcaagagccctgcaccccttaa 19868003
Query: 785 accggagaacgtg 797
|||||||||||||
Sbjct: 19868002 accggagaacgtg 19867990
Score = 143 bits (72), Expect = 4e-31
Identities = 72/72 (100%)
Strand = Plus / Minus
Query: 653 gctgagtcagagcgacatgctgtgggtggagccgtccctgctgcagtaccctgactggag 712
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 19869454 gctgagtcagagcgacatgctgtgggtggagccgtccctgctgcagtaccctgactggag 19869395
Query: 713 gggacatctgtt 724
||||||||||||
Sbjct: 19869394 gggacatctgtt 19869383
Score = 133 bits (67), Expect = 4e-28
Identities = 67/67 (100%)
Strand = Plus / Minus
Query: 795 gtggtcgttctgaatggctgtgcctctctcttctctgctctggccacggtgctgtgtgag 854
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 19867547 gtggtcgttctgaatggctgtgcctctctcttctctgctctggccacggtgctgtgtgag 19867488
Query: 855 gcaggcg 861
|||||||
Sbjct: 19867487 gcaggcg 19867481
Score = 119 bits (60), Expect = 5e-24
Identities = 60/60 (100%)
Strand = Plus / Minus
Query: 594 ggcatcattaacttgggtaccagtgagaacaaactctgctttgacctgctgaccaggcgg 653
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 19872261 ggcatcattaacttgggtaccagtgagaacaaactctgctttgacctgctgaccaggcgg 19872202
Score = 109 bits (55), Expect = 5e-21
Identities = 61/63 (96%)
Strand = Plus / Minus
Query: 1713 gggatgcatagggtccggcaggtgcttgagagcgaatcccaggtggcagcagacgcccct 1772
|||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 19859103 gggatgcagagggtccggcaggtgcttgagagcgaatcccaggtggcagcagatgcccct 19859044
Query: 1773 tcc 1775
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Sbjct: 19859043 tcc 19859041
Score = 97.6 bits (49), Expect = 2e-17
Identities = 49/49 (100%)
Strand = Plus / Minus
Query: 1227 aggctccctgactcccagaggactcatgtgatgtgggcggccagcaagg 1275
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Sbjct: 19862064 aggctccctgactcccagaggactcatgtgatgtgggcggccagcaagg 19862016
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 45,003,901
Number of extensions: 288
Number of successful extensions: 288
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 288
Number of HSP's successfully gapped: 15
Length of query: 1775
Length of database: 2,808,509,378
Length adjustment: 22
Effective length of query: 1753
Effective length of database: 2,808,408,574
Effective search space: 4923140230222
Effective search space used: 4923140230222
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)