Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-004202
(1169 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_788825.1| NADH dehydrogenase [ubiquinone] iron-sulfur pro... 207 2e-53
>ref|NP_788825.1| NADH dehydrogenase [ubiquinone] iron-sulfur protein 5 [Bos taurus].
Length = 106
Score = 207 bits (526), Expect = 2e-53
Identities = 94/105 (89%), Positives = 100/105 (95%)
Frame = +1
Query: 79 MPFFDVQKRLGLDLDRWMTIQSAEQPHKIPGRCHAFEKEWIECAHGIGGIRAEKECKIEF 258
MPFFDVQKRLG+DLDRWMTIQSAEQPHKIP RCHAFEKEWIECAHGIG IRAEKECKIEF
Sbjct: 1 MPFFDVQKRLGVDLDRWMTIQSAEQPHKIPSRCHAFEKEWIECAHGIGSIRAEKECKIEF 60
Query: 259 DDFVECLLRQKTMKRLSAIKRQRDKLIKEGKYTPPPHHLGKEDPR 393
+DF ECLLRQKTMKRL AI+RQR+KLIKEGKYTPPPHH G+E+PR
Sbjct: 61 EDFRECLLRQKTMKRLHAIRRQREKLIKEGKYTPPPHHSGQEEPR 105
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 32,489,632
Number of extensions: 973786
Number of successful extensions: 2131
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 2131
Number of HSP's successfully gapped: 1
Length of query: 389
Length of database: 17,681,374
Length adjustment: 104
Effective length of query: 285
Effective length of database: 14,240,222
Effective search space: 4058463270
Effective search space used: 4058463270
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-004202
(1169 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_532550.2| PREDICTED: similar to NADH-ubiquinone oxidoredu... 229 4e-60
>ref|XP_532550.2| PREDICTED: similar to NADH-ubiquinone oxidoreductase 15 kDa subunit
(Complex I-15 kDa) (CI-15 kDa) [Canis familiaris].
Length = 230
Score = 229 bits (584), Expect = 4e-60
Identities = 107/120 (89%), Positives = 110/120 (91%)
Frame = +1
Query: 37 AAPGEETRTSRPEAMPFFDVQKRLGLDLDRWMTIQSAEQPHKIPGRCHAFEKEWIECAHG 216
AA GE TR R +AMPFFDVQKRLGL+LD WMTIQSAEQPHKIP RCHAFEKEWIECAHG
Sbjct: 111 AAAGEATRAPRRDAMPFFDVQKRLGLNLDHWMTIQSAEQPHKIPSRCHAFEKEWIECAHG 170
Query: 217 IGGIRAEKECKIEFDDFVECLLRQKTMKRLSAIKRQRDKLIKEGKYTPPPHHLGKEDPRP 396
IG RAEKECKIEFDDFVECLLRQKTMKRLS I+RQRDKLIKEGKYTPPPHHLGKEDPRP
Sbjct: 171 IGATRAEKECKIEFDDFVECLLRQKTMKRLSDIRRQRDKLIKEGKYTPPPHHLGKEDPRP 230
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 32,505,126
Number of extensions: 765067
Number of successful extensions: 2142
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 2141
Number of HSP's successfully gapped: 1
Length of query: 389
Length of database: 18,874,504
Length adjustment: 105
Effective length of query: 284
Effective length of database: 15,374,224
Effective search space: 4366279616
Effective search space used: 4366279616
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-004202
(1169 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001171908.1| NADH dehydrogenase [ubiquinone] iron-sulfur ... 193 2e-49
Alignment gi|NP_004543.1| NADH dehydrogenase [ubiquinone] iron-sulfur pro... 193 2e-49
>ref|NP_001171908.1| NADH dehydrogenase [ubiquinone] iron-sulfur protein 5 [Homo
sapiens].
Length = 106
Score = 193 bits (491), Expect = 2e-49
Identities = 84/106 (79%), Positives = 96/106 (90%)
Frame = +1
Query: 79 MPFFDVQKRLGLDLDRWMTIQSAEQPHKIPGRCHAFEKEWIECAHGIGGIRAEKECKIEF 258
MPF D+QKR GL++DRW+TIQS EQP+K+ GRCHAFEKEWIECAHGIG RAEKECKIE+
Sbjct: 1 MPFLDIQKRFGLNIDRWLTIQSGEQPYKMAGRCHAFEKEWIECAHGIGYTRAEKECKIEY 60
Query: 259 DDFVECLLRQKTMKRLSAIKRQRDKLIKEGKYTPPPHHLGKEDPRP 396
DDFVECLLRQKTM+R I++QRDKLIKEGKYTPPPHH+GK +PRP
Sbjct: 61 DDFVECLLRQKTMRRAGTIRKQRDKLIKEGKYTPPPHHIGKGEPRP 106
>ref|NP_004543.1| NADH dehydrogenase [ubiquinone] iron-sulfur protein 5 [Homo
sapiens].
Length = 106
Score = 193 bits (491), Expect = 2e-49
Identities = 84/106 (79%), Positives = 96/106 (90%)
Frame = +1
Query: 79 MPFFDVQKRLGLDLDRWMTIQSAEQPHKIPGRCHAFEKEWIECAHGIGGIRAEKECKIEF 258
MPF D+QKR GL++DRW+TIQS EQP+K+ GRCHAFEKEWIECAHGIG RAEKECKIE+
Sbjct: 1 MPFLDIQKRFGLNIDRWLTIQSGEQPYKMAGRCHAFEKEWIECAHGIGYTRAEKECKIEY 60
Query: 259 DDFVECLLRQKTMKRLSAIKRQRDKLIKEGKYTPPPHHLGKEDPRP 396
DDFVECLLRQKTM+R I++QRDKLIKEGKYTPPPHH+GK +PRP
Sbjct: 61 DDFVECLLRQKTMRRAGTIRKQRDKLIKEGKYTPPPHHIGKGEPRP 106
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 31,996,965
Number of extensions: 744007
Number of successful extensions: 2025
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 2025
Number of HSP's successfully gapped: 2
Length of query: 389
Length of database: 18,297,164
Length adjustment: 104
Effective length of query: 285
Effective length of database: 14,868,908
Effective search space: 4237638780
Effective search space used: 4237638780
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-004202
(1169 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_003086650.1| PREDICTED: NADH dehydrogenase [ubiquinone] i... 176 4e-44
Alignment gi|NP_001025445.1| NADH dehydrogenase [ubiquinone] iron-sulfur ... 176 4e-44
>ref|XP_003086650.1| PREDICTED: NADH dehydrogenase [ubiquinone] iron-sulfur protein
5-like [Mus musculus].
Length = 106
Score = 176 bits (445), Expect = 4e-44
Identities = 78/106 (73%), Positives = 90/106 (84%)
Frame = +1
Query: 79 MPFFDVQKRLGLDLDRWMTIQSAEQPHKIPGRCHAFEKEWIECAHGIGGIRAEKECKIEF 258
MPF D+QK+LG+ LDR SAEQP+K RCHAFEKEWIECAHGIGG RA+KECKIEF
Sbjct: 1 MPFLDIQKKLGISLDRHFMFLSAEQPYKNAARCHAFEKEWIECAHGIGGTRAKKECKIEF 60
Query: 259 DDFVECLLRQKTMKRLSAIKRQRDKLIKEGKYTPPPHHLGKEDPRP 396
DDF ECLLR KTM+R+ IK+QR+KL+KEGKYTPPPHH G+E+PRP
Sbjct: 61 DDFEECLLRYKTMRRMHDIKKQREKLMKEGKYTPPPHHSGREEPRP 106
>ref|NP_001025445.1| NADH dehydrogenase [ubiquinone] iron-sulfur protein 5 [Mus
musculus].
Length = 106
Score = 176 bits (445), Expect = 4e-44
Identities = 78/106 (73%), Positives = 90/106 (84%)
Frame = +1
Query: 79 MPFFDVQKRLGLDLDRWMTIQSAEQPHKIPGRCHAFEKEWIECAHGIGGIRAEKECKIEF 258
MPF D+QK+LG+ LDR SAEQP+K RCHAFEKEWIECAHGIGG RA+KECKIEF
Sbjct: 1 MPFLDIQKKLGISLDRHFMFLSAEQPYKNAARCHAFEKEWIECAHGIGGTRAKKECKIEF 60
Query: 259 DDFVECLLRQKTMKRLSAIKRQRDKLIKEGKYTPPPHHLGKEDPRP 396
DDF ECLLR KTM+R+ IK+QR+KL+KEGKYTPPPHH G+E+PRP
Sbjct: 61 DDFEECLLRYKTMRRMHDIKKQREKLMKEGKYTPPPHHSGREEPRP 106
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 27,481,361
Number of extensions: 647872
Number of successful extensions: 1716
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 1716
Number of HSP's successfully gapped: 2
Length of query: 389
Length of database: 15,617,559
Length adjustment: 103
Effective length of query: 286
Effective length of database: 12,523,851
Effective search space: 3581821386
Effective search space used: 3581821386
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-004202
(1169 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_003356369.1| PREDICTED: NADH dehydrogenase [ubiquinone] i... 229 2e-60
Alignment gi|XP_003127854.1| PREDICTED: NADH dehydrogenase [ubiquinone] i... 229 2e-60
>ref|XP_003356369.1| PREDICTED: NADH dehydrogenase [ubiquinone] iron-sulfur protein
5-like [Sus scrofa].
Length = 106
Score = 229 bits (585), Expect = 2e-60
Identities = 106/106 (100%), Positives = 106/106 (100%)
Frame = +1
Query: 79 MPFFDVQKRLGLDLDRWMTIQSAEQPHKIPGRCHAFEKEWIECAHGIGGIRAEKECKIEF 258
MPFFDVQKRLGLDLDRWMTIQSAEQPHKIPGRCHAFEKEWIECAHGIGGIRAEKECKIEF
Sbjct: 1 MPFFDVQKRLGLDLDRWMTIQSAEQPHKIPGRCHAFEKEWIECAHGIGGIRAEKECKIEF 60
Query: 259 DDFVECLLRQKTMKRLSAIKRQRDKLIKEGKYTPPPHHLGKEDPRP 396
DDFVECLLRQKTMKRLSAIKRQRDKLIKEGKYTPPPHHLGKEDPRP
Sbjct: 61 DDFVECLLRQKTMKRLSAIKRQRDKLIKEGKYTPPPHHLGKEDPRP 106
>ref|XP_003127854.1| PREDICTED: NADH dehydrogenase [ubiquinone] iron-sulfur protein
5-like [Sus scrofa].
Length = 106
Score = 229 bits (585), Expect = 2e-60
Identities = 106/106 (100%), Positives = 106/106 (100%)
Frame = +1
Query: 79 MPFFDVQKRLGLDLDRWMTIQSAEQPHKIPGRCHAFEKEWIECAHGIGGIRAEKECKIEF 258
MPFFDVQKRLGLDLDRWMTIQSAEQPHKIPGRCHAFEKEWIECAHGIGGIRAEKECKIEF
Sbjct: 1 MPFFDVQKRLGLDLDRWMTIQSAEQPHKIPGRCHAFEKEWIECAHGIGGIRAEKECKIEF 60
Query: 259 DDFVECLLRQKTMKRLSAIKRQRDKLIKEGKYTPPPHHLGKEDPRP 396
DDFVECLLRQKTMKRLSAIKRQRDKLIKEGKYTPPPHHLGKEDPRP
Sbjct: 61 DDFVECLLRQKTMKRLSAIKRQRDKLIKEGKYTPPPHHLGKEDPRP 106
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 23,005,340
Number of extensions: 991222
Number of successful extensions: 1341
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 1341
Number of HSP's successfully gapped: 2
Length of query: 389
Length of database: 11,343,932
Length adjustment: 101
Effective length of query: 288
Effective length of database: 8,829,335
Effective search space: 2542848480
Effective search space used: 2542848480
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-004202
(1169 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr06 1106 0.0
Sscrofa_Chr08 72 8e-10
>Sscrofa_Chr06
|| Length = 157765593
Score = 1106 bits (558), Expect = 0.0
Identities = 600/619 (96%)
Strand = Plus / Plus
Query: 294 gatgaaacgtctgagtgccatcaagaggcagcgggataagctaataaaggaagggaagta 353
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 87968773 gatgaaacgtctgagtgccatcaagaggcagcgggataagctaataaaggaagggaagta 87968832
Query: 354 cacgcctccacctcatcacttgggcaaggaggatcctcggccctgagcagagcagctgcc 413
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 87968833 cacgcctccacctcatcacttgggcaaggaggatcctcggccctgagcagagcagctgcc 87968892
Query: 414 cgtggctggaggctgattttcaccatccctcttccctgctggaaagtttgcatactgaaa 473
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 87968893 cgtggctggaggctgattttcaccatccctcttccctgctggaaagtttgcatactgaaa 87968952
Query: 474 gcccctttgcgaaggtatctaaaaataaaggattgctccgtcctnnnnnnnnnnnnnnnc 533
|||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 87968953 gcccctttgcgaaggtatctaaaaataaaggattgctccgtcctatttgttctgattttc 87969012
Query: 534 tcttggatcatactccggtataatgaggctgcagcctatttttcaagtttggaaaagagg 593
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 87969013 tcttggatcatactccggtataatgaggctgcaacctatttttcaagtttggaaaagagg 87969072
Query: 594 ctgctgcctgtgccttaaaagttagcctcttgggaataaaaagcagcatttaatgaatgc 653
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 87969073 ctgctgcctgtgccttaaaagttagcctcttgggaataaaaagcagcatttaatgaatgc 87969132
Query: 654 ttactaggtatgaagtactttaaacatggtaactcgtgtaagaagttgccatgttcctta 713
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 87969133 ttactaggtatgaagtactttaaacatggtaactcgtgtaagaagttgccatgttcctta 87969192
Query: 714 gtgtttctggtttattttctgtaaagcatcaccttgggctctgtagaagaggcagtagag 773
||||||||||||||||||||||||||||||| |||||||||||| | |||||||||||||
Sbjct: 87969193 gtgtttctggtttattttctgtaaagcatcaacttgggctctgtgggagaggcagtagag 87969252
Query: 774 agagtggttgtgtgcttactactaagttctgtgaagtctaactttaagggtaagaaaatg 833
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 87969253 agagtggttgtgtgcttactactaagttctgtgaagtctaactttaagggtaagaaaatg 87969312
Query: 834 acaagttcagataacttcattttgaagaaacaatgctgctgttttaatttgcaatcttat 893
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 87969313 acaagttcagataacttcattttgaagaaacaatgctgctgttttaatttgcaatcttat 87969372
Query: 894 atcggtggtatgctagtac 912
|||||||||||||||||||
Sbjct: 87969373 atcggtggtatgctagtac 87969391
Score = 436 bits (220), Expect = e-119
Identities = 220/220 (100%)
Strand = Plus / Plus
Query: 75 agccatgcctttctttgatgtgcagaaaaggctaggccttgacttagaccgctggatgac 134
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 87965640 agccatgcctttctttgatgtgcagaaaaggctaggccttgacttagaccgctggatgac 87965699
Query: 135 aatccagagtgctgagcagcctcacaagattccaggtcgatgccacgcatttgaaaaaga 194
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 87965700 aatccagagtgctgagcagcctcacaagattccaggtcgatgccacgcatttgaaaaaga 87965759
Query: 195 atggatagagtgtgcacatggaatcggtggtatccgtgcagagaaggagtgcaagataga 254
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 87965760 atggatagagtgtgcacatggaatcggtggtatccgtgcagagaaggagtgcaagataga 87965819
Query: 255 atttgatgattttgtagagtgtctacttcggcagaaaacg 294
||||||||||||||||||||||||||||||||||||||||
Sbjct: 87965820 atttgatgattttgtagagtgtctacttcggcagaaaacg 87965859
Score = 151 bits (76), Expect = 1e-33
Identities = 76/76 (100%)
Strand = Plus / Plus
Query: 1 tcctttgcggcaggcctgaggttcttcctgtaagtagcagcgcccggcgaagagacaagg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 87962957 tcctttgcggcaggcctgaggttcttcctgtaagtagcagcgcccggcgaagagacaagg 87963016
Query: 61 acatcgcgtccagaag 76
||||||||||||||||
Sbjct: 87963017 acatcgcgtccagaag 87963032
>Sscrofa_Chr08
|| Length = 148491826
Score = 71.9 bits (36), Expect = 8e-10
Identities = 132/162 (81%), Gaps = 4/162 (2%)
Strand = Plus / Plus
Query: 274 tgtctacttcggcagaaaacgatgaaacgtctgagtgccatcaagaggcagcgggataag 333
||||| |||| ||| |||| |||||||| ||||| ||||||||||||| || ||||||||
Sbjct: 126621905 tgtctgcttcagcaaaaaatgatgaaacatctgaatgccatcaagaggtagtgggataag 126621964
Query: 334 ctaataaaggaagggaagtacacgcctccacctcatcacttgggcaaggaggatcctcgg 393
|||| | || ||||| |||| ||| || |||| |||| | ||| ||| || ||| ||
Sbjct: 126621965 ctaaca---gaggggaacgacacacct-catctcaacactagagcagggaagagcctagg 126622020
Query: 394 ccctgagcagagcagctgcccgtggctggaggctgattttca 435
||||| || |||||||||| ||||||| |||||||||||||
Sbjct: 126622021 ccctgcgcggagcagctgctggtggctgcaggctgattttca 126622062
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 29,677,599
Number of extensions: 375
Number of successful extensions: 375
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 375
Number of HSP's successfully gapped: 5
Length of query: 1169
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1148
Effective length of database: 2,808,413,156
Effective search space: 3224058303088
Effective search space used: 3224058303088
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)