Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-004209
(2003 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001029889.1| double-strand-break repair protein rad21 hom... 692 0.0
Alignment gi|XP_002692321.1| PREDICTED: RAD21 homolog [Bos taurus]. 98 2e-20
Alignment gi|XP_589922.5| PREDICTED: RAD21 homolog [Bos taurus]. 98 2e-20
Alignment gi|NP_001178217.1| meiotic recombination protein REC8 homolog [... 50 1e-05
Alignment gi|XP_002690583.1| PREDICTED: meiotic recombination protein REC... 50 1e-05
>ref|NP_001029889.1| double-strand-break repair protein rad21 homolog [Bos taurus].
Length = 630
Score = 692 bits (1785), Expect = 0.0
Identities = 358/442 (80%), Positives = 362/442 (81%)
Frame = +2
Query: 8 ASNLLLEPEQSTSNLNEEINHLEYEDQYKDDNFGEGNDGGILDDKLISNNDGGIFDDPPA 187
ASNLLLEPEQSTSNLNE+INHLEYEDQYKDDNFGEGNDGGILDDKLISNNDGGIFDDPPA
Sbjct: 188 ASNLLLEPEQSTSNLNEKINHLEYEDQYKDDNFGEGNDGGILDDKLISNNDGGIFDDPPA 247
Query: 188 LSEAGVMLPEQPAHDDMDEDDNVXXXXXXXXXXXXXXXXXXTMTDQTTLVPNEEEAFALE 367
LSEAGVMLPEQPAHDDMDEDDNV TMTDQTTLVPNEEEAFALE
Sbjct: 248 LSEAGVMLPEQPAHDDMDEDDNVSMGGPDSPDSVDPVEPMPTMTDQTTLVPNEEEAFALE 307
Query: 368 PIDITVKETKAKRKRKLIVDSVKELDSKTIRAQLSDYSDIVTTLDLAPPTKKLMMWKETG 547
PIDITVKETKAKRKRKLIVDSVKELDSKTIRAQLSDYSDIVTTLDLAPPTKKLMMWKETG
Sbjct: 308 PIDITVKETKAKRKRKLIVDSVKELDSKTIRAQLSDYSDIVTTLDLAPPTKKLMMWKETG 367
Query: 548 GVEKLFSLPAQPLWNNRLLKLFTRCLTPLVPEDLRKRRKGGEADNLDEFLKEFENPEVPR 727
GVEKLFSLPAQPLWNNRLLKLFTRCLTPLVPEDLRKRRKGGEADNLDEFLKEFENPEVPR
Sbjct: 368 GVEKLFSLPAQPLWNNRLLKLFTRCLTPLVPEDLRKRRKGGEADNLDEFLKEFENPEVPR 427
Query: 728 EDXXXXXXXRDVIDEPILEEPSRLQDSAMEASRTNLDESAMPPPPPQGVKRKAGQIDPEP 907
ED RDVIDEPILEEPSRLQ+S ME SRTNLDESAMPPPPPQGVKRKAGQIDPEP
Sbjct: 428 EDQQQQHQQRDVIDEPILEEPSRLQES-METSRTNLDESAMPPPPPQGVKRKAGQIDPEP 486
Query: 908 VIPPQQVEHMXXXXXXXXXXXXXNICQLIXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 1087
+IPPQQ E M NICQLI
Sbjct: 487 MIPPQQAEQMEIPPVELPPEEPPNICQLIPELELLPEKEKEKEKEKEDDEEEEDEDASGG 546
Query: 1088 XXXXXXRRWNKRTQQMLHGLQRALAKTGAESISLLELCRNTNRKQAAAKFYSFLVLKKQQ 1267
RRWNKRTQQMLHGLQRALAKTGAESISLLELCRNTNRKQAAAKFYSFLVLKKQQ
Sbjct: 547 DQDQEERRWNKRTQQMLHGLQRALAKTGAESISLLELCRNTNRKQAAAKFYSFLVLKKQQ 606
Query: 1268 AIELTQEEPYGDIVATPGPRFH 1333
AIELTQEEPY DI+ATPGPRFH
Sbjct: 607 AIELTQEEPYSDIIATPGPRFH 628
>ref|XP_002692321.1| PREDICTED: RAD21 homolog [Bos taurus].
Length = 555
Score = 98.2 bits (243), Expect = 2e-20
Identities = 70/226 (30%), Positives = 111/226 (49%), Gaps = 15/226 (6%)
Frame = +2
Query: 98 DNFGEGNDGGILDDKLISNNDGGIFDDPPALSEAGVMLPEQPAHDDMDEDDNVXXXXXXX 277
D FG+ G + D L+ ++ + ++ +E +LPE P + D+
Sbjct: 203 DGFGDEGAAGEMIDNLLQDDQNILLEEMHLNTEIS-LLPESPNTVVVAPDN--------- 252
Query: 278 XXXXXXXXXXXTMTDQTTLVPNEEEAFALEPIDIT-VKETKAKRKRKLIVDSVKELDSKT 454
D+TT V EEE F L+PID + + E + + RKL++D VKE+ SK
Sbjct: 253 --PECVCSPENEKMDETT-VSKEEEEFILDPIDTSDIAEKRKGKNRKLLIDPVKEISSKI 309
Query: 455 IRAQLSDYSDIVTTLDLAPPTKKLMMWKETGGVEKLFSLPAQPLWNNRLLKLFTRCLT-- 628
+ QL+ ++D + L+LAPPT++LMMWK+ GG + L S AQ L + L LFT+C
Sbjct: 310 MHRQLTSFTDTLMVLELAPPTQRLMMWKQKGGADILLSTAAQDLTHAELKMLFTKCFVSS 369
Query: 629 ------PLVPEDLRKRRKGG----EADNLDE--FLKEFENPEVPRE 730
L+ ++ K G E ++E FL+E P+ +E
Sbjct: 370 GFKLGRKLIQKESVKEEMGSKNILETSMMEEPNFLQELSQPKTWKE 415
Score = 98.2 bits (243), Expect = 2e-20
Identities = 48/75 (64%), Positives = 57/75 (76%)
Frame = +2
Query: 1109 RWNKRTQQMLHGLQRALAKTGAESISLLELCRNTNRKQAAAKFYSFLVLKKQQAIELTQE 1288
RWN R QMLH LQ + K G + SL++LCRN++RKQ AAKFYSFL+LKK QAIEL+Q
Sbjct: 480 RWNLRILQMLHSLQES-NKMGMQYFSLMKLCRNSDRKQTAAKFYSFLMLKKHQAIELSQS 538
Query: 1289 EPYGDIVATPGPRFH 1333
PY DI+AT GP FH
Sbjct: 539 APYADIIATVGPMFH 553
>ref|XP_589922.5| PREDICTED: RAD21 homolog [Bos taurus].
Length = 555
Score = 98.2 bits (243), Expect = 2e-20
Identities = 70/226 (30%), Positives = 111/226 (49%), Gaps = 15/226 (6%)
Frame = +2
Query: 98 DNFGEGNDGGILDDKLISNNDGGIFDDPPALSEAGVMLPEQPAHDDMDEDDNVXXXXXXX 277
D FG+ G + D L+ ++ + ++ +E +LPE P + D+
Sbjct: 203 DGFGDEGAAGEMIDNLLQDDQNILLEEMHLNTEIS-LLPESPNTVVVAPDN--------- 252
Query: 278 XXXXXXXXXXXTMTDQTTLVPNEEEAFALEPIDIT-VKETKAKRKRKLIVDSVKELDSKT 454
D+TT V EEE F L+PID + + E + + RKL++D VKE+ SK
Sbjct: 253 --PECVCSPENEKMDETT-VSKEEEEFILDPIDTSDIAEKRKGKNRKLLIDPVKEISSKI 309
Query: 455 IRAQLSDYSDIVTTLDLAPPTKKLMMWKETGGVEKLFSLPAQPLWNNRLLKLFTRCLT-- 628
+ QL+ ++D + L+LAPPT++LMMWK+ GG + L S AQ L + L LFT+C
Sbjct: 310 MHRQLTSFTDTLMVLELAPPTQRLMMWKQKGGADILLSTAAQDLTHAELKMLFTKCFVSS 369
Query: 629 ------PLVPEDLRKRRKGG----EADNLDE--FLKEFENPEVPRE 730
L+ ++ K G E ++E FL+E P+ +E
Sbjct: 370 GFKLGRKLIQKESVKEEMGSKNILETSMMEEPNFLQELSQPKTWKE 415
Score = 98.2 bits (243), Expect = 2e-20
Identities = 48/75 (64%), Positives = 57/75 (76%)
Frame = +2
Query: 1109 RWNKRTQQMLHGLQRALAKTGAESISLLELCRNTNRKQAAAKFYSFLVLKKQQAIELTQE 1288
RWN R QMLH LQ + K G + SL++LCRN++RKQ AAKFYSFL+LKK QAIEL+Q
Sbjct: 480 RWNLRILQMLHSLQES-NKMGMQYFSLMKLCRNSDRKQTAAKFYSFLMLKKHQAIELSQS 538
Query: 1289 EPYGDIVATPGPRFH 1333
PY DI+AT GP FH
Sbjct: 539 APYADIIATVGPMFH 553
>ref|NP_001178217.1| meiotic recombination protein REC8 homolog [Bos taurus].
Length = 587
Score = 49.7 bits (117), Expect = 1e-05
Identities = 22/40 (55%), Positives = 27/40 (67%)
Frame = +2
Query: 1214 RKQAAAKFYSFLVLKKQQAIELTQEEPYGDIVATPGPRFH 1333
R+ AA FY LVL QQ + + QEEPYG ++ PGPRFH
Sbjct: 546 RRMAARVFYLLLVLATQQILRVKQEEPYGRLLIQPGPRFH 585
>ref|XP_002690583.1| PREDICTED: meiotic recombination protein REC8 homolog [Bos taurus].
Length = 587
Score = 49.7 bits (117), Expect = 1e-05
Identities = 22/40 (55%), Positives = 27/40 (67%)
Frame = +2
Query: 1214 RKQAAAKFYSFLVLKKQQAIELTQEEPYGDIVATPGPRFH 1333
R+ AA FY LVL QQ + + QEEPYG ++ PGPRFH
Sbjct: 546 RRMAARVFYLLLVLATQQILRVKQEEPYGRLLIQPGPRFH 585
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 63,960,085
Number of extensions: 1568699
Number of successful extensions: 5614
Number of sequences better than 1.0e-05: 5
Number of HSP's gapped: 5522
Number of HSP's successfully gapped: 7
Length of query: 667
Length of database: 17,681,374
Length adjustment: 109
Effective length of query: 558
Effective length of database: 14,074,782
Effective search space: 7853728356
Effective search space used: 7853728356
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-004209
(2003 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_539142.2| PREDICTED: similar to Double-strand-break repai... 699 0.0
Alignment gi|XP_850253.1| PREDICTED: similar to Double-strand-break repai... 679 0.0
Alignment gi|XP_861017.1| PREDICTED: similar to Double-strand-break repai... 548 e-156
Alignment gi|XP_851946.1| PREDICTED: similar to Double-strand-break repai... 105 2e-22
>ref|XP_539142.2| PREDICTED: similar to Double-strand-break repair protein rad21
homolog (hHR21) (Nuclear matrix protein 1) (NXP-1) (SCC1
homolog) isoform 1 [Canis familiaris].
Length = 631
Score = 699 bits (1804), Expect = 0.0
Identities = 360/443 (81%), Positives = 364/443 (82%)
Frame = +2
Query: 5 SASNLLLEPEQSTSNLNEEINHLEYEDQYKDDNFGEGNDGGILDDKLISNNDGGIFDDPP 184
SASNLLLEPEQSTSNLNE+INHLEYEDQYKDDNFGEGNDGGILDDKLISNNDGGIFDDPP
Sbjct: 187 SASNLLLEPEQSTSNLNEKINHLEYEDQYKDDNFGEGNDGGILDDKLISNNDGGIFDDPP 246
Query: 185 ALSEAGVMLPEQPAHDDMDEDDNVXXXXXXXXXXXXXXXXXXTMTDQTTLVPNEEEAFAL 364
ALSEAGVMLPEQPAHDDMDEDDNV TMTDQTTLVPNEEEAFAL
Sbjct: 247 ALSEAGVMLPEQPAHDDMDEDDNVSMGGPDSPDSVDPVEPMPTMTDQTTLVPNEEEAFAL 306
Query: 365 EPIDITVKETKAKRKRKLIVDSVKELDSKTIRAQLSDYSDIVTTLDLAPPTKKLMMWKET 544
EPIDITVKETKAKRKRKLIVDSVKELDSKTIRAQLSDYSDIVTTLDLAPPTKKLMMWKET
Sbjct: 307 EPIDITVKETKAKRKRKLIVDSVKELDSKTIRAQLSDYSDIVTTLDLAPPTKKLMMWKET 366
Query: 545 GGVEKLFSLPAQPLWNNRLLKLFTRCLTPLVPEDLRKRRKGGEADNLDEFLKEFENPEVP 724
GGVEKLFSLPAQPLWNNRLLKLFTRCLTPLVPEDLRKRRKGGEADNLDEFLKEFENPEVP
Sbjct: 367 GGVEKLFSLPAQPLWNNRLLKLFTRCLTPLVPEDLRKRRKGGEADNLDEFLKEFENPEVP 426
Query: 725 REDXXXXXXXRDVIDEPILEEPSRLQDSAMEASRTNLDESAMPPPPPQGVKRKAGQIDPE 904
RED RDVIDEPILEEPSRLQ+S ME SRTNLDESAMPPPPPQGVKRKAGQIDPE
Sbjct: 427 REDQQQQHQQRDVIDEPILEEPSRLQESVMETSRTNLDESAMPPPPPQGVKRKAGQIDPE 486
Query: 905 PVIPPQQVEHMXXXXXXXXXXXXXNICQLIXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 1084
PVIPPQQVE + NICQLI
Sbjct: 487 PVIPPQQVEQVEIPPVELPPEEPPNICQLIPELELLPEKEKEKEKEKEDDEEEEDEDASG 546
Query: 1085 XXXXXXXRRWNKRTQQMLHGLQRALAKTGAESISLLELCRNTNRKQAAAKFYSFLVLKKQ 1264
RRWNKRTQQMLHGLQRALAKTGAESISLLELCRNTNRKQAAAKFYSFLVLKKQ
Sbjct: 547 GDQDQEERRWNKRTQQMLHGLQRALAKTGAESISLLELCRNTNRKQAAAKFYSFLVLKKQ 606
Query: 1265 QAIELTQEEPYGDIVATPGPRFH 1333
QAIELTQEEPY DI+ATPGPRFH
Sbjct: 607 QAIELTQEEPYSDIIATPGPRFH 629
>ref|XP_850253.1| PREDICTED: similar to Double-strand-break repair protein rad21
homolog (hHR21) (Nuclear matrix protein 1) (NXP-1) (SCC1
homolog) isoform 2 [Canis familiaris].
Length = 643
Score = 679 bits (1753), Expect = 0.0
Identities = 355/455 (78%), Positives = 360/455 (79%), Gaps = 12/455 (2%)
Frame = +2
Query: 5 SASNLLLEPEQSTSNLNEEINHLEYEDQYKDDNFGEGNDGGILDDKLISNNDGGIFDDPP 184
SASNLLLEPEQSTSNLNE+INHLEYEDQYKDDNFGEGNDGGILDDKLISNNDGGIFDDPP
Sbjct: 187 SASNLLLEPEQSTSNLNEKINHLEYEDQYKDDNFGEGNDGGILDDKLISNNDGGIFDDPP 246
Query: 185 ALSEAGVMLPEQPAHDDMDEDDNVXXXXXXXXXXXXXXXXXXTMTDQTTLVPNEEEAFAL 364
ALSEAGVMLPEQPAHDDMDEDDNV TMTDQTTLVPNEEEAFAL
Sbjct: 247 ALSEAGVMLPEQPAHDDMDEDDNVSMGGPDSPDSVDPVEPMPTMTDQTTLVPNEEEAFAL 306
Query: 365 EPIDITVKETKAKRKRKLIVDSVKELDSKTIRAQLSDYSDIVTTLDLAPPTKKLMMWKET 544
EPIDITVKETKAKRKRKLIVDSVKELDSKTIRAQLSDYSDIVTTLDLAPPTKKLMMWKET
Sbjct: 307 EPIDITVKETKAKRKRKLIVDSVKELDSKTIRAQLSDYSDIVTTLDLAPPTKKLMMWKET 366
Query: 545 GGVEKLFSLPAQPLWNNRLLKLFTRCLTPLVPEDLRKRRKGGEADNLDEFLKEFENPEVP 724
GGVEKLFSLPAQPLWNNRLLKLFTRCLTPLVPEDLRKRRKGGEADNLDEFLKEFENPEVP
Sbjct: 367 GGVEKLFSLPAQPLWNNRLLKLFTRCLTPLVPEDLRKRRKGGEADNLDEFLKEFENPEVP 426
Query: 725 REDXXXXXXXRDVIDEPILEEPSRLQDSAMEASRTNLDESAMPPPPPQGVKRKAGQIDPE 904
RED RDVIDEPILEEPSRLQ+S ME SRTNLDESAMPPPPPQGVKRKAGQIDPE
Sbjct: 427 REDQQQQHQQRDVIDEPILEEPSRLQESVMETSRTNLDESAMPPPPPQGVKRKAGQIDPE 486
Query: 905 PVIPP------------QQVEHMXXXXXXXXXXXXXNICQLIXXXXXXXXXXXXXXXXXX 1048
PVIP + + NICQLI
Sbjct: 487 PVIPVITMRKQVTFHRNDFISQVEIPPVELPPEEPPNICQLIPELELLPEKEKEKEKEKE 546
Query: 1049 XXXXXXXXXXXXXXXXXXXRRWNKRTQQMLHGLQRALAKTGAESISLLELCRNTNRKQAA 1228
RRWNKRTQQMLHGLQRALAKTGAESISLLELCRNTNRKQAA
Sbjct: 547 DDEEEEDEDASGGDQDQEERRWNKRTQQMLHGLQRALAKTGAESISLLELCRNTNRKQAA 606
Query: 1229 AKFYSFLVLKKQQAIELTQEEPYGDIVATPGPRFH 1333
AKFYSFLVLKKQQAIELTQEEPY DI+ATPGPRFH
Sbjct: 607 AKFYSFLVLKKQQAIELTQEEPYSDIIATPGPRFH 641
>ref|XP_861017.1| PREDICTED: similar to Double-strand-break repair protein rad21
homolog (hHR21) (Nuclear matrix protein 1) (NXP-1) (SCC1
homolog) isoform 3 [Canis familiaris].
Length = 581
Score = 548 bits (1411), Expect = e-156
Identities = 275/306 (89%), Positives = 278/306 (90%)
Frame = +2
Query: 5 SASNLLLEPEQSTSNLNEEINHLEYEDQYKDDNFGEGNDGGILDDKLISNNDGGIFDDPP 184
SASNLLLEPEQSTSNLNE+INHLEYEDQYKDDNFGEGNDGGILDDKLISNNDGGIFDDPP
Sbjct: 187 SASNLLLEPEQSTSNLNEKINHLEYEDQYKDDNFGEGNDGGILDDKLISNNDGGIFDDPP 246
Query: 185 ALSEAGVMLPEQPAHDDMDEDDNVXXXXXXXXXXXXXXXXXXTMTDQTTLVPNEEEAFAL 364
ALSEAGVMLPEQPAHDDMDEDDNV TMTDQTTLVPNEEEAFAL
Sbjct: 247 ALSEAGVMLPEQPAHDDMDEDDNVSMGGPDSPDSVDPVEPMPTMTDQTTLVPNEEEAFAL 306
Query: 365 EPIDITVKETKAKRKRKLIVDSVKELDSKTIRAQLSDYSDIVTTLDLAPPTKKLMMWKET 544
EPIDITVKETKAKRKRKLIVDSVKELDSKTIRAQLSDYSDIVTTLDLAPPTKKLMMWKET
Sbjct: 307 EPIDITVKETKAKRKRKLIVDSVKELDSKTIRAQLSDYSDIVTTLDLAPPTKKLMMWKET 366
Query: 545 GGVEKLFSLPAQPLWNNRLLKLFTRCLTPLVPEDLRKRRKGGEADNLDEFLKEFENPEVP 724
GGVEKLFSLPAQPLWNNRLLKLFTRCLTPLVPEDLRKRRKGGEADNLDEFLKEFENPEVP
Sbjct: 367 GGVEKLFSLPAQPLWNNRLLKLFTRCLTPLVPEDLRKRRKGGEADNLDEFLKEFENPEVP 426
Query: 725 REDXXXXXXXRDVIDEPILEEPSRLQDSAMEASRTNLDESAMPPPPPQGVKRKAGQIDPE 904
RED RDVIDEPILEEPSRLQ+S ME SRTNLDESAMPPPPPQGVKRKAGQIDPE
Sbjct: 427 REDQQQQHQQRDVIDEPILEEPSRLQESVMETSRTNLDESAMPPPPPQGVKRKAGQIDPE 486
Query: 905 PVIPPQ 922
PVIP +
Sbjct: 487 PVIPDE 492
Score = 152 bits (385), Expect = 9e-37
Identities = 74/76 (97%), Positives = 75/76 (98%)
Frame = +2
Query: 1106 RRWNKRTQQMLHGLQRALAKTGAESISLLELCRNTNRKQAAAKFYSFLVLKKQQAIELTQ 1285
RRWNKRTQQMLHGLQRALAKTGAESISLLELCRNTNRKQAAAKFYSFLVLKKQQAIELTQ
Sbjct: 504 RRWNKRTQQMLHGLQRALAKTGAESISLLELCRNTNRKQAAAKFYSFLVLKKQQAIELTQ 563
Query: 1286 EEPYGDIVATPGPRFH 1333
EEPY DI+ATPGPRFH
Sbjct: 564 EEPYSDIIATPGPRFH 579
>ref|XP_851946.1| PREDICTED: similar to Double-strand-break repair protein rad21
homolog (Pokeweed agglutinin-binding protein 29) (PW29)
(SCC1 homolog) [Canis familiaris].
Length = 669
Score = 105 bits (262), Expect = 2e-22
Identities = 50/75 (66%), Positives = 61/75 (81%)
Frame = +2
Query: 1109 RWNKRTQQMLHGLQRALAKTGAESISLLELCRNTNRKQAAAKFYSFLVLKKQQAIELTQE 1288
RWN+R QML+ L R LA+ G + SL++LCRN++RKQAAAKFYSFLVLKKQQAIEL+Q
Sbjct: 593 RWNRRILQMLNSLSRLLAEMGMQYFSLMKLCRNSDRKQAAAKFYSFLVLKKQQAIELSQS 652
Query: 1289 EPYGDIVATPGPRFH 1333
PY DI+AT GP F+
Sbjct: 653 APYADIIATVGPMFY 667
Score = 93.2 bits (230), Expect = 8e-19
Identities = 59/169 (34%), Positives = 89/169 (52%), Gaps = 1/169 (0%)
Frame = +2
Query: 98 DNFGEGNDGGILDDKLISNNDGGIFDDPPALSEAGVMLPEQPAHDDMDEDDNVXXXXXXX 277
D FG+ G + D L+ ++ + +D E + LP +P E DN
Sbjct: 382 DGFGDEGAAGEMIDNLLQDDQNILLEDMHLSRE--ICLPPEPPETIAVEPDNPEYICLPE 439
Query: 278 XXXXXXXXXXXTMTDQTTLVPNEEEAFALEPIDIT-VKETKAKRKRKLIVDSVKELDSKT 454
D+T+L EE+ LEPIDI+ + E + +KRKL++D VKE+ SK
Sbjct: 440 NGKM----------DETSL-STEEQGITLEPIDISDIAEKRKGKKRKLLIDPVKEISSKI 488
Query: 455 IRAQLSDYSDIVTTLDLAPPTKKLMMWKETGGVEKLFSLPAQPLWNNRL 601
+ QL+ ++D + L+LAPPT++LMMWK+ GGV+ L S AQ L + L
Sbjct: 489 MHKQLTCFTDTLMVLELAPPTQRLMMWKKKGGVDTLLSTAAQDLTHAEL 537
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 66,862,866
Number of extensions: 1609211
Number of successful extensions: 5824
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 5718
Number of HSP's successfully gapped: 6
Length of query: 667
Length of database: 18,874,504
Length adjustment: 109
Effective length of query: 558
Effective length of database: 15,240,880
Effective search space: 8504411040
Effective search space used: 8504411040
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-004209
(2003 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_006256.1| double-strand-break repair protein rad21 homolo... 694 0.0
Alignment gi|NP_001130038.2| double-strand-break repair protein rad21-lik... 108 2e-23
>ref|NP_006256.1| double-strand-break repair protein rad21 homolog [Homo sapiens].
Length = 631
Score = 694 bits (1790), Expect = 0.0
Identities = 356/443 (80%), Positives = 363/443 (81%)
Frame = +2
Query: 5 SASNLLLEPEQSTSNLNEEINHLEYEDQYKDDNFGEGNDGGILDDKLISNNDGGIFDDPP 184
+ SNLLLE EQSTSNLNE+INHLEYEDQYKDDNFGEGNDGGILDDKLISNNDGGIFDDPP
Sbjct: 187 TTSNLLLESEQSTSNLNEKINHLEYEDQYKDDNFGEGNDGGILDDKLISNNDGGIFDDPP 246
Query: 185 ALSEAGVMLPEQPAHDDMDEDDNVXXXXXXXXXXXXXXXXXXTMTDQTTLVPNEEEAFAL 364
ALSEAGVMLPEQPAHDDMDEDDNV TMTDQTTLVPNEEEAFAL
Sbjct: 247 ALSEAGVMLPEQPAHDDMDEDDNVSMGGPDSPDSVDPVEPMPTMTDQTTLVPNEEEAFAL 306
Query: 365 EPIDITVKETKAKRKRKLIVDSVKELDSKTIRAQLSDYSDIVTTLDLAPPTKKLMMWKET 544
EPIDITVKETKAKRKRKLIVDSVKELDSKTIRAQLSDYSDIVTTLDLAPPTKKLMMWKET
Sbjct: 307 EPIDITVKETKAKRKRKLIVDSVKELDSKTIRAQLSDYSDIVTTLDLAPPTKKLMMWKET 366
Query: 545 GGVEKLFSLPAQPLWNNRLLKLFTRCLTPLVPEDLRKRRKGGEADNLDEFLKEFENPEVP 724
GGVEKLFSLPAQPLWNNRLLKLFTRCLTPLVPEDLRKRRKGGEADNLDEFLKEFENPEVP
Sbjct: 367 GGVEKLFSLPAQPLWNNRLLKLFTRCLTPLVPEDLRKRRKGGEADNLDEFLKEFENPEVP 426
Query: 725 REDXXXXXXXRDVIDEPILEEPSRLQDSAMEASRTNLDESAMPPPPPQGVKRKAGQIDPE 904
RED RDVIDEPI+EEPSRLQ+S MEASRTN+DESAMPPPPPQGVKRKAGQIDPE
Sbjct: 427 REDQQQQHQQRDVIDEPIIEEPSRLQESVMEASRTNIDESAMPPPPPQGVKRKAGQIDPE 486
Query: 905 PVIPPQQVEHMXXXXXXXXXXXXXNICQLIXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 1084
PV+PPQQVE M NICQLI
Sbjct: 487 PVMPPQQVEQMEIPPVELPPEEPPNICQLIPELELLPEKEKEKEKEKEDDEEEEDEDASG 546
Query: 1085 XXXXXXXRRWNKRTQQMLHGLQRALAKTGAESISLLELCRNTNRKQAAAKFYSFLVLKKQ 1264
RRWNKRTQQMLHGLQRALAKTGAESISLLELCRNTNRKQAAAKFYSFLVLKKQ
Sbjct: 547 GDQDQEERRWNKRTQQMLHGLQRALAKTGAESISLLELCRNTNRKQAAAKFYSFLVLKKQ 606
Query: 1265 QAIELTQEEPYGDIVATPGPRFH 1333
QAIELTQEEPY DI+ATPGPRFH
Sbjct: 607 QAIELTQEEPYSDIIATPGPRFH 629
>ref|NP_001130038.2| double-strand-break repair protein rad21-like protein 1 [Homo
sapiens].
Length = 556
Score = 108 bits (269), Expect = 2e-23
Identities = 63/176 (35%), Positives = 95/176 (53%), Gaps = 1/176 (0%)
Frame = +2
Query: 98 DNFGEGNDGGILDDKLISNNDGGIFDDPPALSEAGVMLPEQPAHDDMDEDDNVXXXXXXX 277
D FG+ G + D L+ ++ + +D E + LP +P + E DN
Sbjct: 203 DGFGDEGAAGEMIDNLLQDDQNILLEDMHLNRE--ISLPSEPPNSLAVEPDN-------- 252
Query: 278 XXXXXXXXXXXTMTDQTTLVPNEEEAFALEPIDIT-VKETKAKRKRKLIVDSVKELDSKT 454
++T L+ EEE F L+PIDI+ + E + +KR+L++D +KEL SK
Sbjct: 253 --SECICVPENEKMNETILLSTEEEGFTLDPIDISDIAEKRKGKKRRLLIDPIKELSSKV 310
Query: 455 IRAQLSDYSDIVTTLDLAPPTKKLMMWKETGGVEKLFSLPAQPLWNNRLLKLFTRC 622
I QL+ ++D + L+LAPPT++LMMWK+ GGV L S AQ L + L LFT+C
Sbjct: 311 IHKQLTSFADTLMVLELAPPTQRLMMWKKRGGVHTLLSTAAQDLIHAELKMLFTKC 366
Score = 95.1 bits (235), Expect = 2e-19
Identities = 48/75 (64%), Positives = 59/75 (78%)
Frame = +2
Query: 1109 RWNKRTQQMLHGLQRALAKTGAESISLLELCRNTNRKQAAAKFYSFLVLKKQQAIELTQE 1288
RWN R QML+ L+ + K G +S SL++LCRN++RKQAAAKFYSFLVLKKQ AIEL+Q
Sbjct: 481 RWNGRILQMLNRLRES-NKMGMQSFSLMKLCRNSDRKQAAAKFYSFLVLKKQLAIELSQS 539
Query: 1289 EPYGDIVATPGPRFH 1333
PY DI+AT GP F+
Sbjct: 540 APYADIIATMGPMFY 554
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 65,594,328
Number of extensions: 1580074
Number of successful extensions: 5677
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 5564
Number of HSP's successfully gapped: 3
Length of query: 667
Length of database: 18,297,164
Length adjustment: 109
Effective length of query: 558
Effective length of database: 14,704,088
Effective search space: 8204881104
Effective search space used: 8204881104
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-004209
(2003 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_033035.3| double-strand-break repair protein rad21 homolo... 682 0.0
Alignment gi|NP_001108149.1| double-strand-break repair protein rad21-lik... 105 1e-22
>ref|NP_033035.3| double-strand-break repair protein rad21 homolog [Mus musculus].
Length = 635
Score = 682 bits (1761), Expect = 0.0
Identities = 354/447 (79%), Positives = 361/447 (80%), Gaps = 4/447 (0%)
Frame = +2
Query: 5 SASNLLLEPEQSTSNLNEEINHLEYEDQYKDDNFGEGNDGGILDDKLISNNDGGIFDDPP 184
SASNLLLEPEQSTSNLNE++NHLEYEDQYKDDNFGEGNDGGILDDKLISNNDGGIFDDPP
Sbjct: 187 SASNLLLEPEQSTSNLNEKMNHLEYEDQYKDDNFGEGNDGGILDDKLISNNDGGIFDDPP 246
Query: 185 ALSEAGVMLPEQPAHDDMDEDDNVXXXXXXXXXXXXXXXXXXTMTDQTTLVPNEEEAFAL 364
ALSEAGVMLPEQPAHDDMDEDDN TMTDQTTLVPNEEEAFAL
Sbjct: 247 ALSEAGVMLPEQPAHDDMDEDDNGSLGGPDSPDSVDPVEPMPTMTDQTTLVPNEEEAFAL 306
Query: 365 EPIDITVKETKAKRKRKLIVDSVKELDSKTIRAQLSDYSDIVTTLDLAPPTKKLMMWKET 544
EPIDITVKETKAKRKRKLIVDSVKELDSKTIRAQLSDYSDIVTTLDLAPPTKKLMMWKET
Sbjct: 307 EPIDITVKETKAKRKRKLIVDSVKELDSKTIRAQLSDYSDIVTTLDLAPPTKKLMMWKET 366
Query: 545 GGVEKLFSLPAQPLWNNRLLKLFTRCLTPLVPEDLRKRRKGGEADNLDEFLKEFENPEVP 724
GGVEKLF LPAQPLWNNRLLKLFTRCLTPLVPEDLRKRRKGGEADNLDEFLKEFENPEVP
Sbjct: 367 GGVEKLFFLPAQPLWNNRLLKLFTRCLTPLVPEDLRKRRKGGEADNLDEFLKEFENPEVP 426
Query: 725 RED----XXXXXXXRDVIDEPILEEPSRLQDSAMEASRTNLDESAMPPPPPQGVKRKAGQ 892
RE+ RDVIDEPI+EEPSRLQDS MEASRT ++ESAMPPPPPQGVKRKAGQ
Sbjct: 427 REEQQPQQQQPQPQRDVIDEPIIEEPSRLQDSVMEASRTTIEESAMPPPPPQGVKRKAGQ 486
Query: 893 IDPEPVIPPQQVEHMXXXXXXXXXXXXXNICQLIXXXXXXXXXXXXXXXXXXXXXXXXXX 1072
IDPEP IPPQQVE M NICQLI
Sbjct: 487 IDPEPSIPPQQVEQMEIPPVELPPEEPPNICQLIPELELLPEKEKEKEKEKEEEEEEEDE 546
Query: 1073 XXXXXXXXXXXRRWNKRTQQMLHGLQRALAKTGAESISLLELCRNTNRKQAAAKFYSFLV 1252
RRWNKRTQQMLHGLQRALAKTGAESISLLELCRNTNRKQAAAKFYSFLV
Sbjct: 547 DASGGDQDQEERRWNKRTQQMLHGLQRALAKTGAESISLLELCRNTNRKQAAAKFYSFLV 606
Query: 1253 LKKQQAIELTQEEPYGDIVATPGPRFH 1333
LKKQQAIELTQEEPY DI+ATPGPRFH
Sbjct: 607 LKKQQAIELTQEEPYSDIIATPGPRFH 633
>ref|NP_001108149.1| double-strand-break repair protein rad21-like protein 1 [Mus
musculus].
Length = 549
Score = 105 bits (263), Expect = 1e-22
Identities = 62/176 (35%), Positives = 95/176 (53%), Gaps = 1/176 (0%)
Frame = +2
Query: 98 DNFGEGNDGGILDDKLISNNDGGIFDDPPALSEAGVMLPEQPAHDDMDEDDNVXXXXXXX 277
D FG+ G + D L+ D F + L++ + PE P+ + DD
Sbjct: 203 DGFGDEGAAGEMIDNLLQ--DESTFLEEAYLNKEVSLPPELPSSIMGNSDDQCIPEDEEI 260
Query: 278 XXXXXXXXXXXTMTDQTTLVPNEEEAFALEPID-ITVKETKAKRKRKLIVDSVKELDSKT 454
++ TL+ NE+E F L+PID + + + + ++KR+L+VD VKE+ SK
Sbjct: 261 --------------NEITLLSNEDEGFTLDPIDDLDIADRRRRKKRRLLVDPVKEISSKA 306
Query: 455 IRAQLSDYSDIVTTLDLAPPTKKLMMWKETGGVEKLFSLPAQPLWNNRLLKLFTRC 622
+ QL+ + D + LDLAPPT++LMMWK+ GGV+ L S Q L N+ L LFT+C
Sbjct: 307 MHRQLASFMDTLMVLDLAPPTQRLMMWKKRGGVDMLLSTATQDLINDELKMLFTKC 362
Score = 86.3 bits (212), Expect = 8e-17
Identities = 43/75 (57%), Positives = 56/75 (74%)
Frame = +2
Query: 1109 RWNKRTQQMLHGLQRALAKTGAESISLLELCRNTNRKQAAAKFYSFLVLKKQQAIELTQE 1288
+WN+R Q L+ L R K G +S SL +LCRN++RKQAAAKFY+ L+LKK +AIEL+Q
Sbjct: 474 KWNQRLFQTLNVL-REFNKMGMQSFSLKKLCRNSDRKQAAAKFYTLLILKKHRAIELSQS 532
Query: 1289 EPYGDIVATPGPRFH 1333
PY DI+AT GP F+
Sbjct: 533 VPYADIIATVGPMFY 547
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 55,856,967
Number of extensions: 1343792
Number of successful extensions: 4846
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 4765
Number of HSP's successfully gapped: 3
Length of query: 667
Length of database: 15,617,559
Length adjustment: 108
Effective length of query: 559
Effective length of database: 12,373,671
Effective search space: 6916882089
Effective search space used: 6916882089
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-004209
(2003 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_003361918.1| PREDICTED: double-strand-break repair protei... 709 0.0
Alignment gi|XP_003125562.1| PREDICTED: double-strand-break repair protei... 709 0.0
Alignment gi|XP_003355035.1| PREDICTED: double-strand-break repair protei... 709 0.0
Alignment gi|XP_003134394.2| PREDICTED: double-strand-break repair protei... 103 4e-22
>ref|XP_003361918.1| PREDICTED: double-strand-break repair protein rad21 homolog [Sus
scrofa].
Length = 631
Score = 709 bits (1829), Expect = 0.0
Identities = 366/443 (82%), Positives = 367/443 (82%)
Frame = +2
Query: 5 SASNLLLEPEQSTSNLNEEINHLEYEDQYKDDNFGEGNDGGILDDKLISNNDGGIFDDPP 184
SASNLLLEPEQSTSNLNE+INHLEYEDQYKDDNFGEGNDGGILDDKLISNNDGGIFDDPP
Sbjct: 187 SASNLLLEPEQSTSNLNEKINHLEYEDQYKDDNFGEGNDGGILDDKLISNNDGGIFDDPP 246
Query: 185 ALSEAGVMLPEQPAHDDMDEDDNVXXXXXXXXXXXXXXXXXXTMTDQTTLVPNEEEAFAL 364
ALSEAGVMLPEQPAHDDMDEDDNV TMTDQTTLVPNEEEAFAL
Sbjct: 247 ALSEAGVMLPEQPAHDDMDEDDNVSMGGPDSPDSVDPVEPMPTMTDQTTLVPNEEEAFAL 306
Query: 365 EPIDITVKETKAKRKRKLIVDSVKELDSKTIRAQLSDYSDIVTTLDLAPPTKKLMMWKET 544
EPIDITVKETKAKRKRKLIVDSVKELDSKTIRAQLSDYSDIVTTLDLAPPTKKLMMWKET
Sbjct: 307 EPIDITVKETKAKRKRKLIVDSVKELDSKTIRAQLSDYSDIVTTLDLAPPTKKLMMWKET 366
Query: 545 GGVEKLFSLPAQPLWNNRLLKLFTRCLTPLVPEDLRKRRKGGEADNLDEFLKEFENPEVP 724
GGVEKLFSLPAQPLWNNRLLKLFTRCLTPLVPEDLRKRRKGGEADNLDEFLKEFENPEVP
Sbjct: 367 GGVEKLFSLPAQPLWNNRLLKLFTRCLTPLVPEDLRKRRKGGEADNLDEFLKEFENPEVP 426
Query: 725 REDXXXXXXXRDVIDEPILEEPSRLQDSAMEASRTNLDESAMPPPPPQGVKRKAGQIDPE 904
RED RDVIDEPILEEPSRLQDSAMEASRTNLDESAMPPPPPQGVKRKAGQIDPE
Sbjct: 427 REDQQQQHQQRDVIDEPILEEPSRLQDSAMEASRTNLDESAMPPPPPQGVKRKAGQIDPE 486
Query: 905 PVIPPQQVEHMXXXXXXXXXXXXXNICQLIXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 1084
PVIPPQQVEHM NICQLI
Sbjct: 487 PVIPPQQVEHMEIPPVELPPEEPPNICQLIPELELLPEKEKEKEKEKEDDEEEEDEDASG 546
Query: 1085 XXXXXXXRRWNKRTQQMLHGLQRALAKTGAESISLLELCRNTNRKQAAAKFYSFLVLKKQ 1264
RRWNKRTQQMLHGLQRALAKTGAESISLLELCRNTNRKQAAAKFYSFLVLKKQ
Sbjct: 547 GDQDQEERRWNKRTQQMLHGLQRALAKTGAESISLLELCRNTNRKQAAAKFYSFLVLKKQ 606
Query: 1265 QAIELTQEEPYGDIVATPGPRFH 1333
QAIELTQEEPY DIVATPGPRFH
Sbjct: 607 QAIELTQEEPYSDIVATPGPRFH 629
>ref|XP_003125562.1| PREDICTED: double-strand-break repair protein rad21 homolog [Sus
scrofa].
Length = 631
Score = 709 bits (1829), Expect = 0.0
Identities = 366/443 (82%), Positives = 367/443 (82%)
Frame = +2
Query: 5 SASNLLLEPEQSTSNLNEEINHLEYEDQYKDDNFGEGNDGGILDDKLISNNDGGIFDDPP 184
SASNLLLEPEQSTSNLNE+INHLEYEDQYKDDNFGEGNDGGILDDKLISNNDGGIFDDPP
Sbjct: 187 SASNLLLEPEQSTSNLNEKINHLEYEDQYKDDNFGEGNDGGILDDKLISNNDGGIFDDPP 246
Query: 185 ALSEAGVMLPEQPAHDDMDEDDNVXXXXXXXXXXXXXXXXXXTMTDQTTLVPNEEEAFAL 364
ALSEAGVMLPEQPAHDDMDEDDNV TMTDQTTLVPNEEEAFAL
Sbjct: 247 ALSEAGVMLPEQPAHDDMDEDDNVSMGGPDSPDSVDPVEPMPTMTDQTTLVPNEEEAFAL 306
Query: 365 EPIDITVKETKAKRKRKLIVDSVKELDSKTIRAQLSDYSDIVTTLDLAPPTKKLMMWKET 544
EPIDITVKETKAKRKRKLIVDSVKELDSKTIRAQLSDYSDIVTTLDLAPPTKKLMMWKET
Sbjct: 307 EPIDITVKETKAKRKRKLIVDSVKELDSKTIRAQLSDYSDIVTTLDLAPPTKKLMMWKET 366
Query: 545 GGVEKLFSLPAQPLWNNRLLKLFTRCLTPLVPEDLRKRRKGGEADNLDEFLKEFENPEVP 724
GGVEKLFSLPAQPLWNNRLLKLFTRCLTPLVPEDLRKRRKGGEADNLDEFLKEFENPEVP
Sbjct: 367 GGVEKLFSLPAQPLWNNRLLKLFTRCLTPLVPEDLRKRRKGGEADNLDEFLKEFENPEVP 426
Query: 725 REDXXXXXXXRDVIDEPILEEPSRLQDSAMEASRTNLDESAMPPPPPQGVKRKAGQIDPE 904
RED RDVIDEPILEEPSRLQDSAMEASRTNLDESAMPPPPPQGVKRKAGQIDPE
Sbjct: 427 REDQQQQHQQRDVIDEPILEEPSRLQDSAMEASRTNLDESAMPPPPPQGVKRKAGQIDPE 486
Query: 905 PVIPPQQVEHMXXXXXXXXXXXXXNICQLIXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 1084
PVIPPQQVEHM NICQLI
Sbjct: 487 PVIPPQQVEHMEIPPVELPPEEPPNICQLIPELELLPEKEKEKEKEKEDDEEEEDEDASG 546
Query: 1085 XXXXXXXRRWNKRTQQMLHGLQRALAKTGAESISLLELCRNTNRKQAAAKFYSFLVLKKQ 1264
RRWNKRTQQMLHGLQRALAKTGAESISLLELCRNTNRKQAAAKFYSFLVLKKQ
Sbjct: 547 GDQDQEERRWNKRTQQMLHGLQRALAKTGAESISLLELCRNTNRKQAAAKFYSFLVLKKQ 606
Query: 1265 QAIELTQEEPYGDIVATPGPRFH 1333
QAIELTQEEPY DIVATPGPRFH
Sbjct: 607 QAIELTQEEPYSDIVATPGPRFH 629
>ref|XP_003355035.1| PREDICTED: double-strand-break repair protein rad21 homolog [Sus
scrofa].
Length = 631
Score = 709 bits (1829), Expect = 0.0
Identities = 366/443 (82%), Positives = 367/443 (82%)
Frame = +2
Query: 5 SASNLLLEPEQSTSNLNEEINHLEYEDQYKDDNFGEGNDGGILDDKLISNNDGGIFDDPP 184
SASNLLLEPEQSTSNLNE+INHLEYEDQYKDDNFGEGNDGGILDDKLISNNDGGIFDDPP
Sbjct: 187 SASNLLLEPEQSTSNLNEKINHLEYEDQYKDDNFGEGNDGGILDDKLISNNDGGIFDDPP 246
Query: 185 ALSEAGVMLPEQPAHDDMDEDDNVXXXXXXXXXXXXXXXXXXTMTDQTTLVPNEEEAFAL 364
ALSEAGVMLPEQPAHDDMDEDDNV TMTDQTTLVPNEEEAFAL
Sbjct: 247 ALSEAGVMLPEQPAHDDMDEDDNVSMGGPDSPDSVDPVEPMPTMTDQTTLVPNEEEAFAL 306
Query: 365 EPIDITVKETKAKRKRKLIVDSVKELDSKTIRAQLSDYSDIVTTLDLAPPTKKLMMWKET 544
EPIDITVKETKAKRKRKLIVDSVKELDSKTIRAQLSDYSDIVTTLDLAPPTKKLMMWKET
Sbjct: 307 EPIDITVKETKAKRKRKLIVDSVKELDSKTIRAQLSDYSDIVTTLDLAPPTKKLMMWKET 366
Query: 545 GGVEKLFSLPAQPLWNNRLLKLFTRCLTPLVPEDLRKRRKGGEADNLDEFLKEFENPEVP 724
GGVEKLFSLPAQPLWNNRLLKLFTRCLTPLVPEDLRKRRKGGEADNLDEFLKEFENPEVP
Sbjct: 367 GGVEKLFSLPAQPLWNNRLLKLFTRCLTPLVPEDLRKRRKGGEADNLDEFLKEFENPEVP 426
Query: 725 REDXXXXXXXRDVIDEPILEEPSRLQDSAMEASRTNLDESAMPPPPPQGVKRKAGQIDPE 904
RED RDVIDEPILEEPSRLQDSAMEASRTNLDESAMPPPPPQGVKRKAGQIDPE
Sbjct: 427 REDQQQQHQQRDVIDEPILEEPSRLQDSAMEASRTNLDESAMPPPPPQGVKRKAGQIDPE 486
Query: 905 PVIPPQQVEHMXXXXXXXXXXXXXNICQLIXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 1084
PVIPPQQVEHM NICQLI
Sbjct: 487 PVIPPQQVEHMEIPPVELPPEEPPNICQLIPELELLPEKEKEKEKEKEDDEEEEDEDASG 546
Query: 1085 XXXXXXXRRWNKRTQQMLHGLQRALAKTGAESISLLELCRNTNRKQAAAKFYSFLVLKKQ 1264
RRWNKRTQQMLHGLQRALAKTGAESISLLELCRNTNRKQAAAKFYSFLVLKKQ
Sbjct: 547 GDQDQEERRWNKRTQQMLHGLQRALAKTGAESISLLELCRNTNRKQAAAKFYSFLVLKKQ 606
Query: 1265 QAIELTQEEPYGDIVATPGPRFH 1333
QAIELTQEEPY DIVATPGPRFH
Sbjct: 607 QAIELTQEEPYSDIVATPGPRFH 629
>ref|XP_003134394.2| PREDICTED: double-strand-break repair protein rad21-like protein 1
[Sus scrofa].
Length = 555
Score = 103 bits (257), Expect = 4e-22
Identities = 64/176 (36%), Positives = 95/176 (53%), Gaps = 1/176 (0%)
Frame = +2
Query: 98 DNFGEGNDGGILDDKLISNNDGGIFDDPPALSEAGVMLPEQPAHDDMDEDDNVXXXXXXX 277
D FG+ G + D L+ ++ + +D E + LP + + + E DN
Sbjct: 203 DGFGDEGAAGEMIDNLLQDDPNILLEDMHLNRE--ISLPPELPNTIVVESDN-------- 252
Query: 278 XXXXXXXXXXXTMTDQTTLVPNEEEAFALEPIDIT-VKETKAKRKRKLIVDSVKELDSKT 454
D+TTL NEEE F LEPID + + E + +KRKL++D VKE+ SK
Sbjct: 253 --PECICPPENEKMDETTL-SNEEEGFTLEPIDTSDIAEKRKGKKRKLLIDPVKEISSKI 309
Query: 455 IRAQLSDYSDIVTTLDLAPPTKKLMMWKETGGVEKLFSLPAQPLWNNRLLKLFTRC 622
+ QL+ ++D + L+LAPPT++LMMWK+ GG + L S AQ L + L LFT+C
Sbjct: 310 MHRQLTSFTDTLMVLELAPPTQRLMMWKKKGGADTLLSTAAQDLIHAELKVLFTKC 365
Score = 95.9 bits (237), Expect = 7e-20
Identities = 47/75 (62%), Positives = 59/75 (78%)
Frame = +2
Query: 1109 RWNKRTQQMLHGLQRALAKTGAESISLLELCRNTNRKQAAAKFYSFLVLKKQQAIELTQE 1288
RWN+R QML+ L+ + K G + SL++LCRN++RK AAAKFYSFLVLKKQ+AIEL+Q
Sbjct: 480 RWNRRILQMLNRLRES-NKMGMQYFSLMKLCRNSDRKHAAAKFYSFLVLKKQRAIELSQS 538
Query: 1289 EPYGDIVATPGPRFH 1333
PY DI+AT GP FH
Sbjct: 539 APYADIIATVGPMFH 553
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 41,359,590
Number of extensions: 1033438
Number of successful extensions: 3600
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 3524
Number of HSP's successfully gapped: 5
Length of query: 667
Length of database: 11,343,932
Length adjustment: 106
Effective length of query: 561
Effective length of database: 8,704,850
Effective search space: 4883420850
Effective search space used: 4883420850
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-004209
(2003 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr04 1530 0.0
gb|JH118970.1| Sus scrofa unplaced genomic scaffold ChrUScaf3835 446 e-122
>Sscrofa_Chr04
|| Length = 143465943
Score = 1530 bits (772), Expect = 0.0
Identities = 834/857 (97%), Gaps = 2/857 (0%)
Strand = Plus / Minus
Query: 1148 cagcgagctctcgctaaaactggagctgaatctatcagtttgcttgagttgtgtcgaaac 1207
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 23061272 cagcgagctctcgctaaaactggagctgaatctatcagtttgcttgagttgtgtcgaaac 23061213
Query: 1208 acgaacagaaagcaagctgcagcaaagttctacagcttcttggttcttaagaagcagcaa 1267
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 23061212 acgaacagaaagcaagctgcagcaaagttctacagcttcttggttcttaagaagcagcaa 23061153
Query: 1268 gcaattgagctgacccaggaagaaccgtacggtgacatcgttgcaacacctggaccaagg 1327
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 23061152 gcaattgagctgacccaggaagaaccgtacagtgacatcgttgcaacacctggaccaagg 23061093
Query: 1328 ttccacattatttgagcagctagaagcattatagctagtgttcatttcactagtgtgtac 1387
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 23061092 ttccacattatttgagcagctagaagcattatagctagtgttcatttcactagtgtgtac 23061033
Query: 1388 aaattgcccccatgtgtagggcacacaaaacccttcaagaaaatctagatttttgtctgt 1447
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 23061032 aaattgcccccatgtgtagggcacacaaaacccttcaagaaaatctagatttttgtctgt 23060973
Query: 1448 acaaagtctctgccnnnnnnnnnnnnnnccccagtattttaaatgtatcaatttcatctt 1507
|||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 23060972 acaaagtctctgcctttttcatttttttccccagtattttaaatgtatcaatttcatctt 23060913
Query: 1508 taagggaaactgcctgtgtacggtgtttgtgttcaagcacccccaaggaccccaaggttg 1567
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 23060912 taagggaaactgcctgtgtacggtgtttgtgttcaagcacccccaaggaccccaaggttg 23060853
Query: 1568 tttcaacagtccagaacagatgtgtacttgtaataatgttgagtagcagtggaaagtcag 1627
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 23060852 tttcaacagtccagaacagatgtgtacttgtaataatgttgagtagcagtggaaagtcag 23060793
Query: 1628 gggtaattattcttagttctcagtttctacattggaaaggggaactttttggggaaaaat 1687
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 23060792 gggtaattattcttagttctcagtttctacattggaaaggggaactttttggggaaaaat 23060733
Query: 1688 gcctgacagttaagaactatggtatgaatctttgaaattgtcttttcccatcagtaacac 1747
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 23060732 gcctgacagttaagaactatggtatgaatctttgaaattgtcttttcccatcagtaacac 23060673
Query: 1748 ctagcattagtaccattgtgctttangggtggtgcccaagatagacattgtcttcttgaa 1807
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 23060672 ctagcattagtaccattgtgctttaggggtggtgcccaagatagacattgtcttcttgaa 23060613
Query: 1808 atatgttttaaaagtgtaattccacagtgaccaagggggtgtgtgaaattgtacagtaac 1867
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 23060612 atatgttttaaaagtgtaattccacagtgaccaagggggtgtgtgaaattgtacagtaac 23060553
Query: 1868 taatcccctttcactacaaacaagataggacttggtttaaagtgcccctcttttat-aat 1926
|||||||||| |||||||||||||||||||||||||||||||| ||||||||||| |||
Sbjct: 23060552 taatccccttcaactacaaacaagataggacttggtttaaagtg-ccctcttttataaat 23060494
Query: 1927 cattccatttgaaactttttaatgaacctttatatcctgaaatctgttgtttttagtgag 1986
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 23060493 cattccatttgaaactttttaatgaaccttattatcctgaaatctgttgtttttagtgag 23060434
Query: 1987 gctctaaaatgtgcaaa 2003
||||||||||| |||||
Sbjct: 23060433 gctctaaaatgagcaaa 23060417
Score = 446 bits (225), Expect = e-122
Identities = 225/225 (100%)
Strand = Plus / Minus
Query: 383 gttaaagaaacaaaagccaagagaaagaggaagctaattgttgacagtgtcaaagagttg 442
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 23070264 gttaaagaaacaaaagccaagagaaagaggaagctaattgttgacagtgtcaaagagttg 23070205
Query: 443 gatagcaagacgattagagcccaactcagtgattactctgatattgttactactttggat 502
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 23070204 gatagcaagacgattagagcccaactcagtgattactctgatattgttactactttggat 23070145
Query: 503 ctggcaccacccaccaagaaattgatgatgtggaaagagacggggggagtggaaaaactc 562
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 23070144 ctggcaccacccaccaagaaattgatgatgtggaaagagacggggggagtggaaaaactc 23070085
Query: 563 ttctctttgcctgctcagcctttgtggaataacagactactgaag 607
|||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 23070084 ttctctttgcctgctcagcctttgtggaataacagactactgaag 23070040
Score = 321 bits (162), Expect = 8e-85
Identities = 162/162 (100%)
Strand = Plus / Minus
Query: 606 agctctttacacgctgtcttacaccactagtaccagaagatcttagaaaaaggcggaaag 665
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 23069210 agctctttacacgctgtcttacaccactagtaccagaagatcttagaaaaaggcggaaag 23069151
Query: 666 gaggagaagctgataatttggatgaattcctcaaagaatttgaaaatccagaggttccca 725
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 23069150 gaggagaagctgataatttggatgaattcctcaaagaatttgaaaatccagaggttccca 23069091
Query: 726 gagaggaccagcagcaacagcatcagcagcgtgatgttatcg 767
||||||||||||||||||||||||||||||||||||||||||
Sbjct: 23069090 gagaggaccagcagcaacagcatcagcagcgtgatgttatcg 23069049
Score = 254 bits (128), Expect = 2e-64
Identities = 128/128 (100%)
Strand = Plus / Minus
Query: 133 agatgacaaacttattagtaataacgatggaggtatcttcgacgatcccccggccctgtc 192
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 23072609 agatgacaaacttattagtaataacgatggaggtatcttcgacgatcccccggccctgtc 23072550
Query: 193 tgaggcgggggtgatgttgccagaacagcctgcacatgatgatatggatgaggatgataa 252
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 23072549 tgaggcgggggtgatgttgccagaacagcctgcacatgatgatatggatgaggatgataa 23072490
Query: 253 cgtatcaa 260
||||||||
Sbjct: 23072489 cgtatcaa 23072482
Score = 254 bits (128), Expect = 2e-64
Identities = 131/132 (99%)
Strand = Plus / Minus
Query: 3 ctagtgcttctaacctcttgttggagcctgaacagagcaccagcaatctgaatgaagaga 62
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 23073176 ctagtgcttctaacctcttgttggagcctgaacagagcaccagcaatctgaatgaaaaga 23073117
Query: 63 ttaaccatttagaatatgaggaccaatataaggatgacaattttggagaaggaaatgatg 122
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 23073116 ttaaccatttagaatatgaggaccaatataaggatgacaattttggagaaggaaatgatg 23073057
Query: 123 gtggtatactag 134
||||||||||||
Sbjct: 23073056 gtggtatactag 23073045
Score = 250 bits (126), Expect = 3e-63
Identities = 142/150 (94%)
Strand = Plus / Minus
Query: 767 gatgagcccattttggaagagccaagccgcctccaggactctgcgatggaggccagcaga 826
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 23068631 gatgagcccattttggaagagccaagccgcctccaggactctgcgatggaggccagcaga 23068572
Query: 827 acaaacttggatgagtcagccatgnnnnnnnnaccacctcagggagttaagcggaaggca 886
|||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 23068571 acaaacttggatgagtcagccatgccccccccaccacctcagggagttaagcggaaggca 23068512
Query: 887 ggacaaattgatccagagcctgtgatccct 916
||||||||||||||||||||||||||||||
Sbjct: 23068511 ggacaaattgatccagagcctgtgatccct 23068482
Score = 244 bits (123), Expect = 2e-61
Identities = 123/123 (100%)
Strand = Plus / Minus
Query: 261 tgggtgggcctgatagtcccgattcggtggatcctgtcgaaccaatgccaactatgactg 320
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 23072148 tgggtgggcctgatagtcccgattcggtggatcctgtcgaaccaatgccaactatgactg 23072089
Query: 321 atcagacaacacttgtcccaaatgaggaagaagcctttgctttggaacctattgatatca 380
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 23072088 atcagacaacacttgtcccaaatgaggaagaagcctttgctttggaacctattgatatca 23072029
Query: 381 ctg 383
|||
Sbjct: 23072028 ctg 23072026
Score = 196 bits (99), Expect = 3e-47
Identities = 99/99 (100%)
Strand = Plus / Minus
Query: 917 ccgcagcaggtagagcatatggaaatacctcctgtagagctgcccccagaagaaccacca 976
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 23064076 ccgcagcaggtagagcatatggaaatacctcctgtagagctgcccccagaagaaccacca 23064017
Query: 977 aatatctgtcagttaatcccagagttagaactcctacca 1015
|||||||||||||||||||||||||||||||||||||||
Sbjct: 23064016 aatatctgtcagttaatcccagagttagaactcctacca 23063978
Score = 170 bits (86), Expect = 2e-39
Identities = 86/86 (100%)
Strand = Plus / Minus
Query: 1065 aggatgaagatgcttcagggggtgatcaggatcaagaagaaagaaggtggaacaaaagga 1124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 23062243 aggatgaagatgcttcagggggtgatcaggatcaagaagaaagaaggtggaacaaaagga 23062184
Query: 1125 ctcagcagatgcttcatggtcttcag 1150
||||||||||||||||||||||||||
Sbjct: 23062183 ctcagcagatgcttcatggtcttcag 23062158
>gb|JH118970.1| Sus scrofa unplaced genomic scaffold ChrUScaf3835
Length = 173388
Score = 446 bits (225), Expect = e-122
Identities = 225/225 (100%)
Strand = Plus / Plus
Query: 383 gttaaagaaacaaaagccaagagaaagaggaagctaattgttgacagtgtcaaagagttg 442
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 57148 gttaaagaaacaaaagccaagagaaagaggaagctaattgttgacagtgtcaaagagttg 57207
Query: 443 gatagcaagacgattagagcccaactcagtgattactctgatattgttactactttggat 502
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 57208 gatagcaagacgattagagcccaactcagtgattactctgatattgttactactttggat 57267
Query: 503 ctggcaccacccaccaagaaattgatgatgtggaaagagacggggggagtggaaaaactc 562
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 57268 ctggcaccacccaccaagaaattgatgatgtggaaagagacggggggagtggaaaaactc 57327
Query: 563 ttctctttgcctgctcagcctttgtggaataacagactactgaag 607
|||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 57328 ttctctttgcctgctcagcctttgtggaataacagactactgaag 57372
Score = 321 bits (162), Expect = 8e-85
Identities = 162/162 (100%)
Strand = Plus / Plus
Query: 606 agctctttacacgctgtcttacaccactagtaccagaagatcttagaaaaaggcggaaag 665
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 58202 agctctttacacgctgtcttacaccactagtaccagaagatcttagaaaaaggcggaaag 58261
Query: 666 gaggagaagctgataatttggatgaattcctcaaagaatttgaaaatccagaggttccca 725
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 58262 gaggagaagctgataatttggatgaattcctcaaagaatttgaaaatccagaggttccca 58321
Query: 726 gagaggaccagcagcaacagcatcagcagcgtgatgttatcg 767
||||||||||||||||||||||||||||||||||||||||||
Sbjct: 58322 gagaggaccagcagcaacagcatcagcagcgtgatgttatcg 58363
Score = 254 bits (128), Expect = 2e-64
Identities = 131/132 (99%)
Strand = Plus / Plus
Query: 3 ctagtgcttctaacctcttgttggagcctgaacagagcaccagcaatctgaatgaagaga 62
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 54234 ctagtgcttctaacctcttgttggagcctgaacagagcaccagcaatctgaatgaaaaga 54293
Query: 63 ttaaccatttagaatatgaggaccaatataaggatgacaattttggagaaggaaatgatg 122
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 54294 ttaaccatttagaatatgaggaccaatataaggatgacaattttggagaaggaaatgatg 54353
Query: 123 gtggtatactag 134
||||||||||||
Sbjct: 54354 gtggtatactag 54365
Score = 254 bits (128), Expect = 2e-64
Identities = 128/128 (100%)
Strand = Plus / Plus
Query: 133 agatgacaaacttattagtaataacgatggaggtatcttcgacgatcccccggccctgtc 192
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 54801 agatgacaaacttattagtaataacgatggaggtatcttcgacgatcccccggccctgtc 54860
Query: 193 tgaggcgggggtgatgttgccagaacagcctgcacatgatgatatggatgaggatgataa 252
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 54861 tgaggcgggggtgatgttgccagaacagcctgcacatgatgatatggatgaggatgataa 54920
Query: 253 cgtatcaa 260
||||||||
Sbjct: 54921 cgtatcaa 54928
Score = 250 bits (126), Expect = 3e-63
Identities = 142/150 (94%)
Strand = Plus / Plus
Query: 767 gatgagcccattttggaagagccaagccgcctccaggactctgcgatggaggccagcaga 826
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 58781 gatgagcccattttggaagagccaagccgcctccaggactctgcgatggaggccagcaga 58840
Query: 827 acaaacttggatgagtcagccatgnnnnnnnnaccacctcagggagttaagcggaaggca 886
|||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 58841 acaaacttggatgagtcagccatgccccccccaccacctcagggagttaagcggaaggca 58900
Query: 887 ggacaaattgatccagagcctgtgatccct 916
||||||||||||||||||||||||||||||
Sbjct: 58901 ggacaaattgatccagagcctgtgatccct 58930
Score = 244 bits (123), Expect = 2e-61
Identities = 123/123 (100%)
Strand = Plus / Plus
Query: 261 tgggtgggcctgatagtcccgattcggtggatcctgtcgaaccaatgccaactatgactg 320
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 55262 tgggtgggcctgatagtcccgattcggtggatcctgtcgaaccaatgccaactatgactg 55321
Query: 321 atcagacaacacttgtcccaaatgaggaagaagcctttgctttggaacctattgatatca 380
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 55322 atcagacaacacttgtcccaaatgaggaagaagcctttgctttggaacctattgatatca 55381
Query: 381 ctg 383
|||
Sbjct: 55382 ctg 55384
Score = 196 bits (99), Expect = 3e-47
Identities = 99/99 (100%)
Strand = Plus / Plus
Query: 917 ccgcagcaggtagagcatatggaaatacctcctgtagagctgcccccagaagaaccacca 976
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 63255 ccgcagcaggtagagcatatggaaatacctcctgtagagctgcccccagaagaaccacca 63314
Query: 977 aatatctgtcagttaatcccagagttagaactcctacca 1015
|||||||||||||||||||||||||||||||||||||||
Sbjct: 63315 aatatctgtcagttaatcccagagttagaactcctacca 63353
Score = 170 bits (86), Expect = 2e-39
Identities = 86/86 (100%)
Strand = Plus / Plus
Query: 1065 aggatgaagatgcttcagggggtgatcaggatcaagaagaaagaaggtggaacaaaagga 1124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 64926 aggatgaagatgcttcagggggtgatcaggatcaagaagaaagaaggtggaacaaaagga 64985
Query: 1125 ctcagcagatgcttcatggtcttcag 1150
||||||||||||||||||||||||||
Sbjct: 64986 ctcagcagatgcttcatggtcttcag 65011
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 64,732,029
Number of extensions: 678
Number of successful extensions: 678
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 677
Number of HSP's successfully gapped: 20
Length of query: 2003
Length of database: 2,808,509,378
Length adjustment: 22
Effective length of query: 1981
Effective length of database: 2,808,408,574
Effective search space: 5563457385094
Effective search space used: 5563457385094
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)