Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-004213
(960 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001029978.1| coagulation factor VII precursor [Bos taurus]. 403 e-112
Alignment gi|XP_001250512.1| PREDICTED: coagulation factor VII-like [Bos ... 403 e-112
Alignment gi|NP_001073682.1| coagulation factor X [Bos taurus]. 211 6e-55
Alignment gi|NP_001159984.1| vitamin K-dependent protein C [Bos taurus]. 184 1e-46
Alignment gi|XP_002692060.1| PREDICTED: protein Z, vitamin K-dependent pl... 148 6e-36
Alignment gi|XP_002701036.1| PREDICTED: vitamin K-dependent protein Z [Bo... 148 6e-36
Alignment gi|XP_001256722.1| PREDICTED: coagulation factor X-like, partia... 132 4e-31
Alignment gi|XP_580667.3| PREDICTED: growth arrest-specific 6 [Bos taurus]. 97 2e-20
Alignment gi|XP_002692047.1| PREDICTED: growth arrest-specific 6 [Bos tau... 97 2e-20
Alignment gi|NP_776863.1| vitamin K-dependent protein S precursor [Bos ta... 95 8e-20
>ref|NP_001029978.1| coagulation factor VII precursor [Bos taurus].
Length = 447
Score = 403 bits (1036), Expect = e-112
Identities = 184/222 (82%), Positives = 198/222 (89%)
Frame = +2
Query: 290 GSLAAVFVAQEQAHSLLHRFRRANSFLEELWPGSLERECREEQCSFEEAREIFKSEERTR 469
GSL AVF+ QEQA S+LHR RRAN FLEEL PGSLERECREE CSFEEA EIF++EERTR
Sbjct: 19 GSLPAVFLPQEQALSILHRPRRANGFLEELLPGSLERECREELCSFEEAHEIFRNEERTR 78
Query: 470 QFWVSYNDGDQCASNPCLNGGSCEDQLQAYICFCPEGFEGRNCETNKKSQLICMNDNGGC 649
QFWVSYNDGDQCAS+PC NGGSCEDQL++YICFCP+GFEGRNCET+K+SQLIC NDNGGC
Sbjct: 79 QFWVSYNDGDQCASSPCQNGGSCEDQLRSYICFCPDGFEGRNCETDKQSQLICANDNGGC 138
Query: 650 EQYCSDHAEAGRSCWCHEGYALQEDGVSCEPTVEYPCGKIPVLEKRNDSNPQGRIVGGKV 829
EQYC AGR CWCHEGYALQ DGVSC PTVEYPCGKIPVLEKRN S PQGRIVGG V
Sbjct: 139 EQYCGADPGAGRFCWCHEGYALQADGVSCAPTVEYPCGKIPVLEKRNGSKPQGRIVGGHV 198
Query: 830 CPKGECPWQAMLKLKGALLCGGTLLNTSWVVSAAHCFDRIRS 955
CPKGECPWQAMLKL GALLCGGTL+ +WVVSAAHCF+R+RS
Sbjct: 199 CPKGECPWQAMLKLNGALLCGGTLVGPAWVVSAAHCFERLRS 240
>ref|XP_001250512.1| PREDICTED: coagulation factor VII-like [Bos taurus].
Length = 447
Score = 403 bits (1036), Expect = e-112
Identities = 184/222 (82%), Positives = 198/222 (89%)
Frame = +2
Query: 290 GSLAAVFVAQEQAHSLLHRFRRANSFLEELWPGSLERECREEQCSFEEAREIFKSEERTR 469
GSL AVF+ QEQA S+LHR RRAN FLEEL PGSLERECREE CSFEEA EIF++EERTR
Sbjct: 19 GSLPAVFLPQEQALSILHRPRRANGFLEELLPGSLERECREELCSFEEAHEIFRNEERTR 78
Query: 470 QFWVSYNDGDQCASNPCLNGGSCEDQLQAYICFCPEGFEGRNCETNKKSQLICMNDNGGC 649
QFWVSYNDGDQCAS+PC NGGSCEDQL++YICFCP+GFEGRNCET+K+SQLIC NDNGGC
Sbjct: 79 QFWVSYNDGDQCASSPCQNGGSCEDQLRSYICFCPDGFEGRNCETDKQSQLICANDNGGC 138
Query: 650 EQYCSDHAEAGRSCWCHEGYALQEDGVSCEPTVEYPCGKIPVLEKRNDSNPQGRIVGGKV 829
EQYC AGR CWCHEGYALQ DGVSC PTVEYPCGKIPVLEKRN S PQGRIVGG V
Sbjct: 139 EQYCGADPGAGRFCWCHEGYALQADGVSCAPTVEYPCGKIPVLEKRNGSKPQGRIVGGHV 198
Query: 830 CPKGECPWQAMLKLKGALLCGGTLLNTSWVVSAAHCFDRIRS 955
CPKGECPWQAMLKL GALLCGGTL+ +WVVSAAHCF+R+RS
Sbjct: 199 CPKGECPWQAMLKLNGALLCGGTLVGPAWVVSAAHCFERLRS 240
>ref|NP_001073682.1| coagulation factor X [Bos taurus].
Length = 492
Score = 211 bits (538), Expect = 6e-55
Identities = 110/262 (41%), Positives = 143/262 (54%), Gaps = 45/262 (17%)
Frame = +2
Query: 302 AVFVAQEQAHSLLHRFRRANSFLEELWPGSLERECREEQCSFEEAREIFKSEERTRQFWV 481
+VF+ ++QAH +L R RRANSFLEE+ G+LEREC EE CS EEARE+F+ E+T +FW
Sbjct: 23 SVFLPRDQAHRVLQRARRANSFLEEVKQGNLERECLEEACSLEEAREVFEDAEQTDEFWS 82
Query: 482 SYNDGDQCASNPCLNGGSCEDQLQAYICFCPEGFEGRNCETNKKSQLICMNDNGGCEQYC 661
Y DGDQC +PCLN G C+D + Y C C EGFEG+NCE + + IC DNGGC+Q+C
Sbjct: 83 KYKDGDQCEGHPCLNQGHCKDGIGDYTCTCAEGFEGKNCEFSTRE--ICSLDNGGCDQFC 140
Query: 662 SDHAEAGRSCWCHEGYALQEDGVSCEPTVEYPCGKIPVLEKR------------------ 787
+ R C C GY L +D SC T +PCGK R
Sbjct: 141 REERSEVR-CSCAHGYVLGDDSKSCVSTERFPCGKFTQGRSRRWAIHTSEDALDASELEH 199
Query: 788 --------------------------NDSNPQGRIVGGKVCPKGECPWQAML-KLKGALL 886
D + RIVGG+ C +GECPWQA+L +
Sbjct: 200 YDPADLSPTESSLDLLGLNRTEPSAGEDGSQVVRIVGGRDCAEGECPWQALLVNEENEGF 259
Query: 887 CGGTLLNTSWVVSAAHCFDRIR 952
CGGT+LN +V++AAHC + +
Sbjct: 260 CGGTILNEFYVLTAAHCLHQAK 281
>ref|NP_001159984.1| vitamin K-dependent protein C [Bos taurus].
Length = 480
Score = 184 bits (466), Expect = 1e-46
Identities = 102/236 (43%), Positives = 134/236 (56%), Gaps = 22/236 (9%)
Frame = +2
Query: 302 AVFVAQEQAHSLLHRFRRANSFLEELWPGSLERECREEQCSFEEAREIFKSEERTRQFWV 481
+VF + ++AH +L +RANSFLEEL PG++EREC EE C FEEAREIF++ E T FW
Sbjct: 46 SVFSSSQRAHQVLRIRKRANSFLEELRPGNVERECSEEVCEFEEAREIFQNTEDTMAFWS 105
Query: 482 SYNDGDQCASN--------PCLNGGSCEDQLQAYICFCPEGFEGRNCETNKKSQLICMND 637
Y+DGDQC PC G C D L + C C EG+EGR C ++ C +
Sbjct: 106 KYSDGDQCEDRPSGSPCDLPCCGRGKCIDGLGGFRCDCAEGWEGRFC-LHEVRFSNCSAE 164
Query: 638 NGGCEQYCSDHAEAGRSCWCHEGYALQEDGVSCEPTVEYPCGKI-PVLEK-----RNDSN 799
NGGC YC + E R C C GY L++D C V +PCG++ +EK + D+N
Sbjct: 165 NGGCAHYCMEE-EGRRHCSCAPGYRLEDDHQLCVSKVTFPCGRLGKRMEKKRKTLKRDTN 223
Query: 800 P-------QGRIVGGKVCPKGECPWQA-MLKLKGALLCGGTLLNTSWVVSAAHCFD 943
RIV G+ GE PWQA +L K L+CG L++ SWV++ AHC D
Sbjct: 224 QVDQKDQLDPRIVDGQEAGWGESPWQAVLLDSKKKLVCGAVLIHVSWVLTVAHCLD 279
>ref|XP_002692060.1| PREDICTED: protein Z, vitamin K-dependent plasma glycoprotein [Bos
taurus].
Length = 442
Score = 148 bits (374), Expect = 6e-36
Identities = 84/214 (39%), Positives = 117/214 (54%), Gaps = 3/214 (1%)
Frame = +2
Query: 305 VFVAQEQAHSLLHRFRRANSFL-EELWPGSLERECREEQCSFEEAREIFKSEERTRQFWV 481
VF+ +AH LL R+RRA S+L EEL+ G LE+EC EE C +EEARE+F+ +E T +FW
Sbjct: 30 VFLPASKAHELLARWRRAGSYLLEELFEGHLEKECWEEICVYEEAREVFEDDETTDEFWR 89
Query: 482 SYNDGDQCASNPCLNGGSCEDQLQAYICFCPEGFEGRNCETNKKSQLICMNDNGGCEQYC 661
+Y G CAS PCLN GSC+D ++ Y C C G+EG NC + D GC+ +C
Sbjct: 90 TYMGGSPCASQPCLNNGSCQDSIRGYACTCAPGYEGPNCAFAESECHPLRLD--GCQHFC 147
Query: 662 SDHAEAGRSCWCHEGYALQEDGVSCEPTVEYPCGKI-PVLEKRNDSNPQGRIVGGKVCPK 838
E+ +C C G+ L +D SC P CG + P +R + Q +
Sbjct: 148 YPGPES-YTCSCARGHKLGQDRRSCLPHDRCACGTLGPECCQRPQGSQQNLL-------- 198
Query: 839 GECPWQAML-KLKGALLCGGTLLNTSWVVSAAHC 937
PWQ L +G CGG L+ ++V++ A C
Sbjct: 199 -PFPWQVKLTNSEGKDFCGGVLIQDNFVLTTATC 231
>ref|XP_002701036.1| PREDICTED: vitamin K-dependent protein Z [Bos taurus].
Length = 442
Score = 148 bits (374), Expect = 6e-36
Identities = 84/214 (39%), Positives = 117/214 (54%), Gaps = 3/214 (1%)
Frame = +2
Query: 305 VFVAQEQAHSLLHRFRRANSFL-EELWPGSLERECREEQCSFEEAREIFKSEERTRQFWV 481
VF+ +AH LL R+RRA S+L EEL+ G LE+EC EE C +EEARE+F+ +E T +FW
Sbjct: 30 VFLPASKAHELLARWRRAGSYLLEELFEGHLEKECWEEICVYEEAREVFEDDETTDEFWR 89
Query: 482 SYNDGDQCASNPCLNGGSCEDQLQAYICFCPEGFEGRNCETNKKSQLICMNDNGGCEQYC 661
+Y G CAS PCLN GSC+D ++ Y C C G+EG NC + D GC+ +C
Sbjct: 90 TYMGGSPCASQPCLNNGSCQDSIRGYACTCAPGYEGPNCAFAESECHPLRLD--GCQHFC 147
Query: 662 SDHAEAGRSCWCHEGYALQEDGVSCEPTVEYPCGKI-PVLEKRNDSNPQGRIVGGKVCPK 838
E+ +C C G+ L +D SC P CG + P +R + Q +
Sbjct: 148 YPGPES-YTCSCARGHKLGQDRRSCLPHDRCACGTLGPECCQRPQGSQQNLL-------- 198
Query: 839 GECPWQAML-KLKGALLCGGTLLNTSWVVSAAHC 937
PWQ L +G CGG L+ ++V++ A C
Sbjct: 199 -PFPWQVKLTNSEGKDFCGGVLIQDNFVLTTATC 231
>ref|XP_001256722.1| PREDICTED: coagulation factor X-like, partial [Bos taurus].
Length = 406
Score = 132 bits (332), Expect = 4e-31
Identities = 72/198 (36%), Positives = 94/198 (47%), Gaps = 45/198 (22%)
Frame = +2
Query: 494 GDQCASNPCLNGGSCEDQLQAYICFCPEGFEGRNCETNKKSQLICMNDNGGCEQYCSDHA 673
GDQC +PCLN G C+D + Y C C EGFEG+NCE + + IC DNGGC+Q+C +
Sbjct: 1 GDQCEGHPCLNQGHCKDGIGDYTCTCAEGFEGKNCEFSTRE--ICSLDNGGCDQFCREER 58
Query: 674 EAGRSCWCHEGYALQEDGVSCEPTVEYPCGKIPVLEKR---------------------- 787
R C C GY L +D SC T +PCGK R
Sbjct: 59 SEVR-CSCAHGYVLGDDSKSCVSTERFPCGKFTQGRSRRWAIHTSEDALDASELEHYDPA 117
Query: 788 ----------------------NDSNPQGRIVGGKVCPKGECPWQAML-KLKGALLCGGT 898
D + RIVGG+ C +GECPWQA+L + CGGT
Sbjct: 118 DLSPTESSLDLLGLNRTEPSAGEDGSQVVRIVGGRDCAEGECPWQALLVNEENEGFCGGT 177
Query: 899 LLNTSWVVSAAHCFDRIR 952
+LN +V++AAHC + +
Sbjct: 178 ILNEFYVLTAAHCLHQAK 195
>ref|XP_580667.3| PREDICTED: growth arrest-specific 6 [Bos taurus].
Length = 671
Score = 97.4 bits (241), Expect = 2e-20
Identities = 60/183 (32%), Positives = 85/183 (46%), Gaps = 35/183 (19%)
Frame = +2
Query: 293 SLAAVFVAQEQAHSLLHRFRRANSFL-----------EELWPGSLERECREEQCSFEEAR 439
+L + +A E AH+++ R R A FL EE G LEREC EE CS EEAR
Sbjct: 12 ALLLLLLASESAHTVMLRAREAAQFLRPRQRRAYQVFEEAKQGHLERECVEELCSREEAR 71
Query: 440 EIFKSEERTRQFWVSYND----------------------GDQCASNPCLNGGS--CEDQ 547
E+F+++ T F+ Y + DQC+ +PC G+ C+D
Sbjct: 72 EVFENDPETEYFYPRYLECINKHGSPYQKNPAFVTCVQKLPDQCSPDPCNKKGTHVCQDL 131
Query: 548 LQAYICFCPEGFEGRNCETNKKSQLICMNDNGGCEQYCSDHAEAGRSCWCHEGYALQEDG 727
+ + C C +G+ GR C+ + C +NGGC Q C + C CH GY L D
Sbjct: 132 MGNFYCQCRDGWAGRLCDRDVNE---CSQENGGCSQICYNQ-PGSFQCACHGGYMLSPDS 187
Query: 728 VSC 736
+C
Sbjct: 188 RTC 190
>ref|XP_002692047.1| PREDICTED: growth arrest-specific 6 [Bos taurus].
Length = 645
Score = 97.1 bits (240), Expect = 2e-20
Identities = 58/165 (35%), Positives = 78/165 (47%), Gaps = 24/165 (14%)
Frame = +2
Query: 314 AQEQAHSLLHRFRRANSFLEELWPGSLERECREEQCSFEEAREIFKSEERTRQFWVSYND 493
A+E A L R RRA EE G LEREC EE CS EEARE+F+++ T F+ Y +
Sbjct: 4 AREAAQFLRPRQRRAYQVFEEAKQGHLERECVEELCSREEAREVFENDPETEYFYPRYLE 63
Query: 494 ----------------------GDQCASNPCLNGGS--CEDQLQAYICFCPEGFEGRNCE 601
DQC+ +PC G+ C+D + + C C +G+ GR C+
Sbjct: 64 CINKHGSPYQKNPAFVTCVQKLPDQCSPDPCNKKGTHVCQDLMGNFYCQCRDGWAGRLCD 123
Query: 602 TNKKSQLICMNDNGGCEQYCSDHAEAGRSCWCHEGYALQEDGVSC 736
+ C +NGGC Q C + C CH GY L D +C
Sbjct: 124 RDVNE---CSQENGGCSQICYNQ-PGSFQCACHGGYMLSPDSRTC 164
>ref|NP_776863.1| vitamin K-dependent protein S precursor [Bos taurus].
Length = 675
Score = 95.1 bits (235), Expect = 8e-20
Identities = 58/184 (31%), Positives = 83/184 (45%), Gaps = 32/184 (17%)
Frame = +2
Query: 296 LAAVFVAQEQAHSLLHRFRRANSFLEELWPGSLERECREEQCSFEEAREIFKSEERTRQF 475
L A F++++ A +L R RRAN+ LEE G+LEREC EE C+ EEAREIF++ T F
Sbjct: 22 LEANFLSRQHASQVLIRRRRANTLLEETKKGNLERECIEELCNKEEAREIFENNPETEYF 81
Query: 476 WVSYND------------------------------GDQCASNPCLNGG--SCEDQLQAY 559
+ Y DQC PC G +C+D +
Sbjct: 82 YPKYLGCLGSFRAGLFTAARLSTNAYPDLRSCVNAISDQCNPLPCNEDGFMTCKDGQATF 141
Query: 560 ICFCPEGFEGRNCETNKKSQLICMNDNGGCEQYCSDHAEAGRSCWCHEGYALQEDGVSCE 739
C C G++G CE++ +N NGGC Q C ++ C C G+ + + C+
Sbjct: 142 TCICKSGWQGEKCESDINECKDPVNINGGCSQIC-ENTPGSYHCSCKNGFVMLSNKKDCK 200
Query: 740 PTVE 751
E
Sbjct: 201 DVDE 204
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 40,008,598
Number of extensions: 1347336
Number of successful extensions: 10894
Number of sequences better than 1.0e-05: 156
Number of HSP's gapped: 10050
Number of HSP's successfully gapped: 294
Length of query: 320
Length of database: 17,681,374
Length adjustment: 102
Effective length of query: 218
Effective length of database: 14,306,398
Effective search space: 3118794764
Effective search space used: 3118794764
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-004213
(960 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001041498.1| coagulation factor VII [Canis lupus familiar... 407 e-114
Alignment gi|NP_001003323.1| coagulation factor IX preproprotein [Canis l... 203 2e-52
Alignment gi|XP_855987.1| PREDICTED: similar to Coagulation factor X prec... 201 8e-52
Alignment gi|XP_855946.1| PREDICTED: similar to Coagulation factor X prec... 201 8e-52
Alignment gi|XP_534191.1| PREDICTED: similar to Coagulation factor X prec... 201 8e-52
Alignment gi|NP_001013871.1| vitamin K-dependent protein C [Canis lupus f... 199 2e-51
Alignment gi|XP_849623.1| PREDICTED: similar to growth arrest-specific 6 ... 99 5e-21
Alignment gi|XP_535708.2| PREDICTED: similar to Vitamin K-dependent prote... 93 4e-19
Alignment gi|XP_549337.2| PREDICTED: similar to Transmembrane gamma-carbo... 82 7e-16
Alignment gi|XP_548941.2| PREDICTED: similar to Transmembrane gamma-carbo... 80 2e-15
>ref|NP_001041498.1| coagulation factor VII [Canis lupus familiaris].
Length = 446
Score = 407 bits (1047), Expect = e-114
Identities = 181/224 (80%), Positives = 202/224 (90%)
Frame = +2
Query: 287 QGSLAAVFVAQEQAHSLLHRFRRANSFLEELWPGSLERECREEQCSFEEAREIFKSEERT 466
QGSLAAVF+ QE+A +LHR RRANSFLEEL GSLERECREEQCSFEEAREIF+ +RT
Sbjct: 18 QGSLAAVFLTQEEAQGVLHRQRRANSFLEELRAGSLERECREEQCSFEEAREIFQDVDRT 77
Query: 467 RQFWVSYNDGDQCASNPCLNGGSCEDQLQAYICFCPEGFEGRNCETNKKSQLICMNDNGG 646
RQFW+SY DGDQCASNPC NGGSCEDQLQ+YICFCP+ F+GRNCET+KK QLICMN+NGG
Sbjct: 78 RQFWISYKDGDQCASNPCQNGGSCEDQLQSYICFCPDDFQGRNCETDKKDQLICMNENGG 137
Query: 647 CEQYCSDHAEAGRSCWCHEGYALQEDGVSCEPTVEYPCGKIPVLEKRNDSNPQGRIVGGK 826
C+QYCSDHAEA RSCWCHEGY LQ+DGVSC P VEYPCGKIPVLEKR SNPQGRIVGGK
Sbjct: 138 CQQYCSDHAEARRSCWCHEGYTLQDDGVSCMPIVEYPCGKIPVLEKRIGSNPQGRIVGGK 197
Query: 827 VCPKGECPWQAMLKLKGALLCGGTLLNTSWVVSAAHCFDRIRSW 958
VCPKGECPWQA +K+ G LLCGGTL++ +WVVSAAHCF+RI++W
Sbjct: 198 VCPKGECPWQAAVKVDGKLLCGGTLIDAAWVVSAAHCFERIKNW 241
>ref|NP_001003323.1| coagulation factor IX preproprotein [Canis lupus familiaris].
Length = 452
Score = 203 bits (516), Expect = 2e-52
Identities = 107/244 (43%), Positives = 141/244 (57%), Gaps = 30/244 (12%)
Frame = +2
Query: 302 AVFVAQEQAHSLLHRFRRANSF-LEELWPGSLERECREEQCSFEEAREIFKSEERTRQFW 478
AVF+ +E A +L R +R NS LEE G+LEREC EE+CSFEEARE+F++ E+T +FW
Sbjct: 22 AVFLDRENATKILSRPKRYNSGKLEEFVRGNLERECIEEKCSFEEAREVFENTEKTTEFW 81
Query: 479 VSYNDGDQCASNPCLNGGSCEDQLQAYICFCPEGFEGRNCETNKKSQLICMNDNGGCEQY 658
Y DGDQC SNPCLN G C+D + +Y C+C GFEG+NCE + + C NG C+Q+
Sbjct: 82 KQYVDGDQCESNPCLNDGVCKDDINSYECWCRAGFEGKNCELD----VTCNIKNGRCKQF 137
Query: 659 CSDHAEAGRSCWCHEGYALQEDGVSCEPTVEYPCGKIPV--------------------- 775
C + C C GY L ED SCEP V +PCG++ V
Sbjct: 138 CKLGPDNKVVCSCTTGYQLAEDQRSCEPAVPFPCGRVSVPHISMTRTRAETLFSNMDYEN 197
Query: 776 ---LEKRNDS-----NPQGRIVGGKVCPKGECPWQAMLKLKGALLCGGTLLNTSWVVSAA 931
+EK D+ N R+VGGK G+ PWQ +L K CGG+++N WVV+AA
Sbjct: 198 STEVEKILDNVTQPLNDFTRVVGGKDAKPGQFPWQVLLNGKVDAFCGGSIINEKWVVTAA 257
Query: 932 HCFD 943
HC +
Sbjct: 258 HCIE 261
>ref|XP_855987.1| PREDICTED: similar to Coagulation factor X precursor (Stuart
factor) (Stuart-Prower factor) isoform 3 [Canis
familiaris].
Length = 492
Score = 201 bits (511), Expect = 8e-52
Identities = 105/270 (38%), Positives = 147/270 (54%), Gaps = 51/270 (18%)
Frame = +2
Query: 302 AVFVAQEQAHSLLHRFRRANSFLEELWPGSLERECREEQCSFEEAREIFKSEERTRQFWV 481
+VF++ E+A S+L R RRANSFLEE+ G+LEREC EE CSFEEARE+F+ +T +FW
Sbjct: 23 SVFLSPERASSVLGRVRRANSFLEEMKKGNLERECMEETCSFEEAREVFEDTAKTMEFWN 82
Query: 482 SYNDGDQCASNPCLNGGSCEDQLQAYICFCPEGFEGRNCETNKKSQLICMNDNGGCEQYC 661
Y DGDQC S+PC N G C+D L Y C C EG+EG+NCE + + +C DNG C+Q+C
Sbjct: 83 KYKDGDQCESSPCQNQGQCKDGLLEYSCICLEGYEGKNCELSTRK--LCSVDNGDCDQFC 140
Query: 662 SDHAEAGRSCWCHEGYALQEDGVSCEPTVEYPCGKIPVLEKR------------------ 787
+ ++ C C GY L ++G SC T +PCGK V ++
Sbjct: 141 REE-QSSVVCSCASGYILGDNGKSCISTEPFPCGKTTVGRRKRATETAPSSEAPPDAEEE 199
Query: 788 --------------------------------NDSNPQGRIVGGKVCPKGECPWQAML-K 868
D++ RIVGG+ C GECPWQA+L
Sbjct: 200 AGMLEQYDPGDLSPTQSTMFLLPFNQTNSDPDEDASGLVRIVGGQDCRDGECPWQALLIN 259
Query: 869 LKGALLCGGTLLNTSWVVSAAHCFDRIRSW 958
+ CGGT+L+ ++++AAHC + + +
Sbjct: 260 EENEGFCGGTILSEYYILTAAHCLQQAKKF 289
>ref|XP_855946.1| PREDICTED: similar to Coagulation factor X precursor (Stuart
factor) (Stuart-Prower factor) isoform 2 [Canis
familiaris].
Length = 493
Score = 201 bits (511), Expect = 8e-52
Identities = 105/270 (38%), Positives = 147/270 (54%), Gaps = 51/270 (18%)
Frame = +2
Query: 302 AVFVAQEQAHSLLHRFRRANSFLEELWPGSLERECREEQCSFEEAREIFKSEERTRQFWV 481
+VF++ E+A S+L R RRANSFLEE+ G+LEREC EE CSFEEARE+F+ +T +FW
Sbjct: 23 SVFLSPERASSVLGRVRRANSFLEEMKKGNLERECMEETCSFEEAREVFEDTAKTMEFWN 82
Query: 482 SYNDGDQCASNPCLNGGSCEDQLQAYICFCPEGFEGRNCETNKKSQLICMNDNGGCEQYC 661
Y DGDQC S+PC N G C+D L Y C C EG+EG+NCE + + +C DNG C+Q+C
Sbjct: 83 KYKDGDQCESSPCQNQGQCKDGLLEYSCICLEGYEGKNCELSTRK--LCSVDNGDCDQFC 140
Query: 662 SDHAEAGRSCWCHEGYALQEDGVSCEPTVEYPCGKIPVLEKR------------------ 787
+ ++ C C GY L ++G SC T +PCGK V ++
Sbjct: 141 REE-QSSVVCSCASGYILGDNGKSCISTEPFPCGKTTVGRRKRATETAPSSEAPPDAEEE 199
Query: 788 --------------------------------NDSNPQGRIVGGKVCPKGECPWQAML-K 868
D++ RIVGG+ C GECPWQA+L
Sbjct: 200 AGMLEQYDPGDLSPTQSTMFLLPFNQTNSDPDEDASGLVRIVGGQDCRDGECPWQALLIN 259
Query: 869 LKGALLCGGTLLNTSWVVSAAHCFDRIRSW 958
+ CGGT+L+ ++++AAHC + + +
Sbjct: 260 EENEGFCGGTILSEYYILTAAHCLQQAKKF 289
>ref|XP_534191.1| PREDICTED: similar to Coagulation factor X precursor (Stuart
factor) (Stuart-Prower factor) isoform 1 [Canis
familiaris].
Length = 486
Score = 201 bits (511), Expect = 8e-52
Identities = 105/270 (38%), Positives = 147/270 (54%), Gaps = 51/270 (18%)
Frame = +2
Query: 302 AVFVAQEQAHSLLHRFRRANSFLEELWPGSLERECREEQCSFEEAREIFKSEERTRQFWV 481
+VF++ E+A S+L R RRANSFLEE+ G+LEREC EE CSFEEARE+F+ +T +FW
Sbjct: 23 SVFLSPERASSVLGRVRRANSFLEEMKKGNLERECMEETCSFEEAREVFEDTAKTMEFWN 82
Query: 482 SYNDGDQCASNPCLNGGSCEDQLQAYICFCPEGFEGRNCETNKKSQLICMNDNGGCEQYC 661
Y DGDQC S+PC N G C+D L Y C C EG+EG+NCE + + +C DNG C+Q+C
Sbjct: 83 KYKDGDQCESSPCQNQGQCKDGLLEYSCICLEGYEGKNCELSTRK--LCSVDNGDCDQFC 140
Query: 662 SDHAEAGRSCWCHEGYALQEDGVSCEPTVEYPCGKIPVLEKR------------------ 787
+ ++ C C GY L ++G SC T +PCGK V ++
Sbjct: 141 REE-QSSVVCSCASGYILGDNGKSCISTEPFPCGKTTVGRRKRATETAPSSEAPPDAEEE 199
Query: 788 --------------------------------NDSNPQGRIVGGKVCPKGECPWQAML-K 868
D++ RIVGG+ C GECPWQA+L
Sbjct: 200 AGMLEQYDPGDLSPTQSTMFLLPFNQTNSDPDEDASGLVRIVGGQDCRDGECPWQALLIN 259
Query: 869 LKGALLCGGTLLNTSWVVSAAHCFDRIRSW 958
+ CGGT+L+ ++++AAHC + + +
Sbjct: 260 EENEGFCGGTILSEYYILTAAHCLQQAKKF 289
>ref|NP_001013871.1| vitamin K-dependent protein C [Canis lupus familiaris].
Length = 456
Score = 199 bits (507), Expect = 2e-51
Identities = 106/233 (45%), Positives = 143/233 (61%), Gaps = 19/233 (8%)
Frame = +2
Query: 302 AVFVAQEQAHSLLHRFRRANSFLEELWPGSLERECREEQCSFEEAREIFKSEERTRQFWV 481
+VF + E AH +L +RANSFLEE+ GSLEREC EE C FEEA+EIF++ + T +W
Sbjct: 25 SVFSSSESAHQVLRIRKRANSFLEEIRAGSLERECMEEICDFEEAKEIFQNVDDTLAYWS 84
Query: 482 SYNDGDQCAS--------NPCLNGGSCEDQLQAYICFCPEGFEGRNCETNKKSQLICMND 637
Y DGDQCA+ +PC GSC D + A+ C C G+EGR C+ ++ S + C D
Sbjct: 85 KYVDGDQCAALPPEHACDSPCCGHGSCIDGIGAFHCDCGRGWEGRFCQ-HEVSYINCSLD 143
Query: 638 NGGCEQYCSDHAEAGRSCWCHEGYALQEDGVSCEPTVEYPCGKI-PVLEK-----RNDSN 799
NGGC YC + E GR C C GY L +D + C+P V++PCG+ +EK + D+N
Sbjct: 144 NGGCSHYCLEE-EGGRHCSCAPGYRLGDDHLQCQPAVKFPCGRPGKQMEKKRKHLKRDTN 202
Query: 800 P----QGRIVGGKVCPKGECPWQ-AMLKLKGALLCGGTLLNTSWVVSAAHCFD 943
R+V GKV +GE PWQ +L K L CG L++TSWV++AAHC +
Sbjct: 203 QTDQIDPRLVNGKVTRRGESPWQVVLLDSKKKLACGAVLIHTSWVLTAAHCME 255
>ref|XP_849623.1| PREDICTED: similar to growth arrest-specific 6 [Canis familiaris].
Length = 685
Score = 99.4 bits (246), Expect = 5e-21
Identities = 63/188 (33%), Positives = 86/188 (45%), Gaps = 35/188 (18%)
Frame = +2
Query: 293 SLAAVFVAQEQAHSLLHRFRRANSFL-----------EELWPGSLERECREEQCSFEEAR 439
+L + +A E AH+++ R R A FL EE G LEREC EE CS EEAR
Sbjct: 14 ALLLLLLASESAHTVMLRAREAAQFLRPRQRRAYQVFEEAKQGHLERECIEELCSQEEAR 73
Query: 440 EIFKSEERTRQFWVSYND----------------------GDQCASNPCLNGGS--CEDQ 547
E+F+++ T F+ Y D DQC+ NPC G+ C+D
Sbjct: 74 EVFENDPETDYFYPRYLDCITKHGSPYTKSPDFVSCVQNLPDQCSPNPCTKEGTQVCQDL 133
Query: 548 LQAYICFCPEGFEGRNCETNKKSQLICMNDNGGCEQYCSDHAEAGRSCWCHEGYALQEDG 727
+ + C C G+ GR C+ + C NGGC C + C C+ GYAL DG
Sbjct: 134 MGNFYCQCRAGWGGRLCDRDVNE---CGQQNGGCNHICF-NKPGSFHCACYSGYALSHDG 189
Query: 728 VSCEPTVE 751
+C+ E
Sbjct: 190 RTCQDVDE 197
>ref|XP_535708.2| PREDICTED: similar to Vitamin K-dependent protein S precursor
[Canis familiaris].
Length = 677
Score = 92.8 bits (229), Expect = 4e-19
Identities = 62/189 (32%), Positives = 84/189 (44%), Gaps = 32/189 (16%)
Frame = +2
Query: 302 AVFVAQEQAHSLLHRFRRANSFLEELWPGSLERECREEQCSFEEAREIFKSEERTRQFWV 481
A F+++E A +L R RRANS EE G+LEREC EE C+ EEAREIF+++ T F+
Sbjct: 24 ANFLSKEHASQVLVRKRRANSMFEETKKGNLERECIEELCNKEEAREIFENDPETDYFYP 83
Query: 482 SY------------------NDG------------DQCASNPCLNGG--SCEDQLQAYIC 565
Y D DQC+ PC G +C D + C
Sbjct: 84 KYLGCLGSFRAGLFTAARLSTDAYPDLRSCVTAIPDQCSPLPCNEDGYKTCRDGQATFTC 143
Query: 566 FCPEGFEGRNCETNKKSQLICMNDNGGCEQYCSDHAEAGRSCWCHEGYALQEDGVSCEPT 745
C G++G CE + N NGGC Q C D+ C C G+ + + C+
Sbjct: 144 ICKPGWQGDRCEYDINECKDPSNINGGCSQMC-DNTPGSYHCSCKSGFVMLLNKKDCKDV 202
Query: 746 VEYPCGKIP 772
E C +P
Sbjct: 203 DE--CSIMP 209
>ref|XP_549337.2| PREDICTED: similar to Transmembrane gamma-carboxyglutamic acid
protein 3 precursor (Proline-rich Gla protein 3)
(Proline-rich gamma-carboxyglutamic acid protein 3)
[Canis familiaris].
Length = 239
Score = 82.0 bits (201), Expect = 7e-16
Identities = 36/75 (48%), Positives = 53/75 (70%)
Frame = +2
Query: 293 SLAAVFVAQEQAHSLLHRFRRANSFLEELWPGSLERECREEQCSFEEAREIFKSEERTRQ 472
+L++VF+ + AHS+L RF RAN FLEEL G++EREC EE CS+EE +E+F+ +E+T +
Sbjct: 7 ALSSVFLEAKNAHSVLKRFPRANEFLEELRQGTIERECMEEVCSYEEVKEVFEDKEKTME 66
Query: 473 FWVSYNDGDQCASNP 517
FW Y + +P
Sbjct: 67 FWKGYPNAVYSVRDP 81
>ref|XP_548941.2| PREDICTED: similar to Transmembrane gamma-carboxyglutamic acid
protein 1 precursor (Proline-rich Gla protein 1)
(Proline-rich gamma-carboxyglutamic acid protein 1)
[Canis familiaris].
Length = 231
Score = 80.5 bits (197), Expect = 2e-15
Identities = 40/89 (44%), Positives = 59/89 (66%)
Frame = +2
Query: 302 AVFVAQEQAHSLLHRFRRANSFLEELWPGSLERECREEQCSFEEAREIFKSEERTRQFWV 481
A+F+ E+A+S+L R+ RAN EE+ G+++REC+EE C+FEEARE F++ E+T++FW
Sbjct: 16 AIFLTGEKANSVLKRYPRANGLFEEIRQGNIDRECKEEICTFEEAREAFENTEKTKEFWT 75
Query: 482 SYNDGDQCASNPCLNGGSCEDQLQAYICF 568
+Y Q S N GS D Q Y+ F
Sbjct: 76 TYTKAQQGES----NRGS--DWFQFYLTF 98
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 41,739,807
Number of extensions: 1388820
Number of successful extensions: 11251
Number of sequences better than 1.0e-05: 130
Number of HSP's gapped: 10311
Number of HSP's successfully gapped: 284
Length of query: 320
Length of database: 18,874,504
Length adjustment: 103
Effective length of query: 217
Effective length of database: 15,440,896
Effective search space: 3350674432
Effective search space used: 3350674432
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-004213
(960 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_062562.1| coagulation factor VII isoform b precursor [Hom... 390 e-109
Alignment gi|NP_000122.1| coagulation factor VII isoform a precursor [Hom... 382 e-106
Alignment gi|NP_000124.1| coagulation factor IX preproprotein [Homo sapie... 214 7e-56
Alignment gi|NP_000495.1| coagulation factor X preproprotein [Homo sapien... 203 2e-52
Alignment gi|NP_000303.1| vitamin K-dependent protein C preproprotein [Ho... 178 6e-45
Alignment gi|NP_003882.1| vitamin K-dependent protein Z precursor [Homo s... 145 4e-35
Alignment gi|NP_000811.1| growth arrest-specific protein 6 isoform 1 prec... 104 1e-22
Alignment gi|NP_000304.2| vitamin K-dependent protein S preproprotein [Ho... 97 2e-20
Alignment gi|NP_001135867.1| transmembrane gamma-carboxyglutamic acid pro... 83 3e-16
Alignment gi|NP_000941.1| transmembrane gamma-carboxyglutamic acid protei... 83 3e-16
>ref|NP_062562.1| coagulation factor VII isoform b precursor [Homo sapiens].
Length = 444
Score = 390 bits (1002), Expect = e-109
Identities = 174/224 (77%), Positives = 195/224 (87%)
Frame = +2
Query: 287 QGSLAAVFVAQEQAHSLLHRFRRANSFLEELWPGSLERECREEQCSFEEAREIFKSEERT 466
QG LAAVFV QE+AH +LHR RRAN+FLEEL PGSLEREC+EEQCSFEEAREIFK ERT
Sbjct: 16 QGCLAAVFVTQEEAHGVLHRRRRANAFLEELRPGSLERECKEEQCSFEEAREIFKDAERT 75
Query: 467 RQFWVSYNDGDQCASNPCLNGGSCEDQLQAYICFCPEGFEGRNCETNKKSQLICMNDNGG 646
+ FW+SY+DGDQCAS+PC NGGSC+DQLQ+YICFC FEGRNCET+K QLIC+N+NGG
Sbjct: 76 KLFWISYSDGDQCASSPCQNGGSCKDQLQSYICFCLPAFEGRNCETHKDDQLICVNENGG 135
Query: 647 CEQYCSDHAEAGRSCWCHEGYALQEDGVSCEPTVEYPCGKIPVLEKRNDSNPQGRIVGGK 826
CEQYCSDH RSC CHEGY+L DGVSC PTVEYPCGKIP+LEKRN S PQGRIVGGK
Sbjct: 136 CEQYCSDHTGTKRSCRCHEGYSLLADGVSCTPTVEYPCGKIPILEKRNASKPQGRIVGGK 195
Query: 827 VCPKGECPWQAMLKLKGALLCGGTLLNTSWVVSAAHCFDRIRSW 958
VCPKGECPWQ +L + GA LCGGTL+NT WVVSAAHCFD+I++W
Sbjct: 196 VCPKGECPWQVLLLVNGAQLCGGTLINTIWVVSAAHCFDKIKNW 239
>ref|NP_000122.1| coagulation factor VII isoform a precursor [Homo sapiens].
Length = 466
Score = 382 bits (980), Expect = e-106
Identities = 169/218 (77%), Positives = 190/218 (87%)
Frame = +2
Query: 305 VFVAQEQAHSLLHRFRRANSFLEELWPGSLERECREEQCSFEEAREIFKSEERTRQFWVS 484
VFV QE+AH +LHR RRAN+FLEEL PGSLEREC+EEQCSFEEAREIFK ERT+ FW+S
Sbjct: 44 VFVTQEEAHGVLHRRRRANAFLEELRPGSLERECKEEQCSFEEAREIFKDAERTKLFWIS 103
Query: 485 YNDGDQCASNPCLNGGSCEDQLQAYICFCPEGFEGRNCETNKKSQLICMNDNGGCEQYCS 664
Y+DGDQCAS+PC NGGSC+DQLQ+YICFC FEGRNCET+K QLIC+N+NGGCEQYCS
Sbjct: 104 YSDGDQCASSPCQNGGSCKDQLQSYICFCLPAFEGRNCETHKDDQLICVNENGGCEQYCS 163
Query: 665 DHAEAGRSCWCHEGYALQEDGVSCEPTVEYPCGKIPVLEKRNDSNPQGRIVGGKVCPKGE 844
DH RSC CHEGY+L DGVSC PTVEYPCGKIP+LEKRN S PQGRIVGGKVCPKGE
Sbjct: 164 DHTGTKRSCRCHEGYSLLADGVSCTPTVEYPCGKIPILEKRNASKPQGRIVGGKVCPKGE 223
Query: 845 CPWQAMLKLKGALLCGGTLLNTSWVVSAAHCFDRIRSW 958
CPWQ +L + GA LCGGTL+NT WVVSAAHCFD+I++W
Sbjct: 224 CPWQVLLLVNGAQLCGGTLINTIWVVSAAHCFDKIKNW 261
>ref|NP_000124.1| coagulation factor IX preproprotein [Homo sapiens].
Length = 461
Score = 214 bits (546), Expect = 7e-56
Identities = 107/245 (43%), Positives = 143/245 (58%), Gaps = 32/245 (13%)
Frame = +2
Query: 305 VFVAQEQAHSLLHRFRRANSF-LEELWPGSLERECREEQCSFEEAREIFKSEERTRQFWV 481
VF+ E A+ +L+R +R NS LEE G+LEREC EE+CSFEEARE+F++ ERT +FW
Sbjct: 30 VFLDHENANKILNRPKRYNSGKLEEFVQGNLERECMEEKCSFEEAREVFENTERTTEFWK 89
Query: 482 SYNDGDQCASNPCLNGGSCEDQLQAYICFCPEGFEGRNCETNKKSQLICMNDNGGCEQYC 661
Y DGDQC SNPCLNGGSC+D + +Y C+CP GFEG+NCE + + C NG CEQ+C
Sbjct: 90 QYVDGDQCESNPCLNGGSCKDDINSYECWCPFGFEGKNCELD----VTCNIKNGRCEQFC 145
Query: 662 SDHAEAGRSCWCHEGYALQEDGVSCEPTVEYPCGKIPV---------------------- 775
+ A+ C C EGY L E+ SCEP V +PCG++ V
Sbjct: 146 KNSADNKVVCSCTEGYRLAENQKSCEPAVPFPCGRVSVSQTSKLTRAETVFPDVDYVNST 205
Query: 776 ---------LEKRNDSNPQGRIVGGKVCPKGECPWQAMLKLKGALLCGGTLLNTSWVVSA 928
+ N R+VGG+ G+ PWQ +L K CGG+++N W+V+A
Sbjct: 206 EAETILDNITQSTQSFNDFTRVVGGEDAKPGQFPWQVVLNGKVDAFCGGSIVNEKWIVTA 265
Query: 929 AHCFD 943
AHC +
Sbjct: 266 AHCVE 270
>ref|NP_000495.1| coagulation factor X preproprotein [Homo sapiens].
Length = 488
Score = 203 bits (516), Expect = 2e-52
Identities = 106/259 (40%), Positives = 145/259 (55%), Gaps = 47/259 (18%)
Frame = +2
Query: 302 AVFVAQEQAHSLLHRFRRANSFLEELWPGSLERECREEQCSFEEAREIFKSEERTRQFWV 481
++F+ +EQA+++L R RANSFLEE+ G LEREC EE CS+EEARE+F+ ++T +FW
Sbjct: 23 SLFIRREQANNILARVTRANSFLEEMKKGHLERECMEETCSYEEAREVFEDSDKTNEFWN 82
Query: 482 SYNDGDQCASNPCLNGGSCEDQLQAYICFCPEGFEGRNCETNKKSQLICMNDNGGCEQYC 661
Y DGDQC ++PC N G C+D L Y C C EGFEG+NCE + +C DNG C+Q+C
Sbjct: 83 KYKDGDQCETSPCQNQGKCKDGLGEYTCTCLEGFEGKNCELFTRK--LCSLDNGDCDQFC 140
Query: 662 SDHAEAGRSCWCHEGYALQEDGVSCEPTVEYPCGKIPVLEKR------------------ 787
+ + C C GY L ++G +C PT YPCGK LE+R
Sbjct: 141 HEE-QNSVVCSCARGYTLADNGKACIPTGPYPCGK-QTLERRKRSVAQATSSSGEAPDSI 198
Query: 788 ----------------------NDSNPQ------GRIVGGKVCPKGECPWQAML-KLKGA 880
N + P+ RIVGG+ C GECPWQA+L +
Sbjct: 199 TWKPYDAADLDPTENPFDLLDFNQTQPERGDNNLTRIVGGQECKDGECPWQALLINEENE 258
Query: 881 LLCGGTLLNTSWVVSAAHC 937
CGGT+L+ ++++AAHC
Sbjct: 259 GFCGGTILSEFYILTAAHC 277
>ref|NP_000303.1| vitamin K-dependent protein C preproprotein [Homo sapiens].
Length = 461
Score = 178 bits (452), Expect = 6e-45
Identities = 98/236 (41%), Positives = 134/236 (56%), Gaps = 20/236 (8%)
Frame = +2
Query: 296 LAAVFVAQEQAHSLLHRFRRANSFLEELWPGSLERECREEQCSFEEAREIFKSEERTRQF 475
L +VF + E+AH +L +RANSFLEEL SLEREC EE C FEEA+EIF++ + T F
Sbjct: 23 LDSVFSSSERAHQVLRIRKRANSFLEELRHSSLERECIEEICDFEEAKEIFQNVDDTLAF 82
Query: 476 WVSYNDGDQCASNP--------CLNGGSCEDQLQAYICFCPEGFEGRNCETNKKSQLICM 631
W + DGDQC P C G+C D + ++ C C G+EGR C+ + S L C
Sbjct: 83 WSKHVDGDQCLVLPLEHPCASLCCGHGTCIDGIGSFSCDCRSGWEGRFCQ-REVSFLNCS 141
Query: 632 NDNGGCEQYCSDHAEAGRSCWCHEGYALQEDGVSCEPTVEYPCGK-IPVLEKR------- 787
DNGGC YC + R C C GY L +D + C P V++PCG+ +EK+
Sbjct: 142 LDNGGCTHYCLEEV-GWRRCSCAPGYKLGDDLLQCHPAVKFPCGRPWKRMEKKRSHLKRD 200
Query: 788 ---NDSNPQGRIVGGKVCPKGECPWQ-AMLKLKGALLCGGTLLNTSWVVSAAHCFD 943
+ R++ GK+ +G+ PWQ +L K L CG L++ SWV++AAHC D
Sbjct: 201 TEDQEDQVDPRLIDGKMTRRGDSPWQVVLLDSKKKLACGAVLIHPSWVLTAAHCMD 256
>ref|NP_003882.1| vitamin K-dependent protein Z precursor [Homo sapiens].
Length = 400
Score = 145 bits (367), Expect = 4e-35
Identities = 79/215 (36%), Positives = 117/215 (54%), Gaps = 3/215 (1%)
Frame = +2
Query: 302 AVFVAQEQAHSLLHRFRRANSFL-EELWPGSLERECREEQCSFEEAREIFKSEERTRQFW 478
+VF+ +A+ +L R++RA S+L EEL+ G+LE+EC EE C +EEARE+F++E T +FW
Sbjct: 23 SVFLPASKANDVLVRWKRAGSYLLEELFEGNLEKECYEEICVYEEAREVFENEVVTDEFW 82
Query: 479 VSYNDGDQCASNPCLNGGSCEDQLQAYICFCPEGFEGRNCETNKKSQLICMND-NGGCEQ 655
Y G C S PCL+ GSC+D + Y C C G+EG NCE K C + GC+
Sbjct: 83 RRYKGGSPCISQPCLHNGSCQDSIWGYTCTCSPGYEGSNCELAKNE---CHPERTDGCQH 139
Query: 656 YCSDHAEAGRSCWCHEGYALQEDGVSCEPTVEYPCGKIPVLEKRNDSNPQGRIVGGKVCP 835
+C E+ +C C +GY L ED C P + CG + ++ D
Sbjct: 140 FCLPGQES-YTCSCAQGYRLGEDHKQCVPHDQCACGVLTSEKRAPDLQ------------ 186
Query: 836 KGECPWQAML-KLKGALLCGGTLLNTSWVVSAAHC 937
+ PWQ L +G CGG ++ ++V++ A C
Sbjct: 187 --DLPWQVKLTNSEGKDFCGGVIIRENFVLTTAKC 219
>ref|NP_000811.1| growth arrest-specific protein 6 isoform 1 precursor [Homo
sapiens].
Length = 678
Score = 104 bits (259), Expect = 1e-22
Identities = 64/174 (36%), Positives = 84/174 (48%), Gaps = 25/174 (14%)
Frame = +2
Query: 293 SLAAVFVAQEQAHSLLHRFRRANSFLEELWPGSLERECREEQCSFEEAREIFKSEERTRQ 472
+LAA+ A+E L R RRA EE G LEREC EE CS EEARE+F+++ T
Sbjct: 28 ALAALLPAREATQFLRPRQRRAFQVFEEAKQGHLERECVEELCSREEAREVFENDPETDY 87
Query: 473 FWVSYND----------------------GDQCASNPCLNGG--SCEDQLQAYICFCPEG 580
F+ Y D DQC NPC G +C+D + + C C G
Sbjct: 88 FYPRYLDCINKYGSPYTKNSGFATCVQNLPDQCTPNPCDRKGTQACQDLMGNFFCLCKAG 147
Query: 581 FEGRNCETNKKSQLICMNDNGGCEQYCSDHAEAGR-SCWCHEGYALQEDGVSCE 739
+ GR C+ + C +NGGC Q C H + G C CH G+ L DG +C+
Sbjct: 148 WGGRLCDKDVNE---CSQENGGCLQIC--HNKPGSFHCSCHSGFELSSDGRTCQ 196
>ref|NP_000304.2| vitamin K-dependent protein S preproprotein [Homo sapiens].
Length = 676
Score = 97.1 bits (240), Expect = 2e-20
Identities = 61/182 (33%), Positives = 86/182 (47%), Gaps = 32/182 (17%)
Frame = +2
Query: 302 AVFVAQEQAHSLLHRFRRANSFLEELWPGSLERECREEQCSFEEAREIFKSEERTRQFWV 481
A F++++QA +L R RRANS LEE G+LEREC EE C+ EEARE+F+++ T F+
Sbjct: 24 ANFLSKQQASQVLVRKRRANSLLEETKQGNLERECIEELCNKEEAREVFENDPETDYFYP 83
Query: 482 -------SYNDG-----------------------DQCASNPCLNGG--SCEDQLQAYIC 565
S+ G DQC+ PC G SC+D ++ C
Sbjct: 84 KYLVCLRSFQTGLFTAARQSTNAYPDLRSCVNAIPDQCSPLPCNEDGYMSCKDGKASFTC 143
Query: 566 FCPEGFEGRNCETNKKSQLICMNDNGGCEQYCSDHAEAGRSCWCHEGYALQEDGVSCEPT 745
C G++G CE + N NGGC Q C D+ C C G+ + + C+
Sbjct: 144 TCKPGWQGEKCEFDINECKDPSNINGGCSQIC-DNTPGSYHCSCKNGFVMLSNKKDCKDV 202
Query: 746 VE 751
E
Sbjct: 203 DE 204
>ref|NP_001135867.1| transmembrane gamma-carboxyglutamic acid protein 1 isoform 1
precursor [Homo sapiens].
Length = 218
Score = 83.2 bits (204), Expect = 3e-16
Identities = 42/91 (46%), Positives = 60/91 (65%)
Frame = +2
Query: 296 LAAVFVAQEQAHSLLHRFRRANSFLEELWPGSLERECREEQCSFEEAREIFKSEERTRQF 475
+ VF+ E+A+S+L R+ RAN F EE+ G++EREC+EE C+FEEARE F++ E+T++F
Sbjct: 1 MGRVFLTGEKANSILKRYPRANGFFEEIRQGNIERECKEEFCTFEEAREAFENNEKTKEF 60
Query: 476 WVSYNDGDQCASNPCLNGGSCEDQLQAYICF 568
W +Y Q S N GS D Q Y+ F
Sbjct: 61 WSTYTKAQQGES----NRGS--DWFQFYLTF 85
>ref|NP_000941.1| transmembrane gamma-carboxyglutamic acid protein 1 isoform 1
precursor [Homo sapiens].
Length = 218
Score = 83.2 bits (204), Expect = 3e-16
Identities = 42/91 (46%), Positives = 60/91 (65%)
Frame = +2
Query: 296 LAAVFVAQEQAHSLLHRFRRANSFLEELWPGSLERECREEQCSFEEAREIFKSEERTRQF 475
+ VF+ E+A+S+L R+ RAN F EE+ G++EREC+EE C+FEEARE F++ E+T++F
Sbjct: 1 MGRVFLTGEKANSILKRYPRANGFFEEIRQGNIERECKEEFCTFEEAREAFENNEKTKEF 60
Query: 476 WVSYNDGDQCASNPCLNGGSCEDQLQAYICF 568
W +Y Q S N GS D Q Y+ F
Sbjct: 61 WSTYTKAQQGES----NRGS--DWFQFYLTF 85
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 40,758,462
Number of extensions: 1340218
Number of successful extensions: 10267
Number of sequences better than 1.0e-05: 145
Number of HSP's gapped: 9479
Number of HSP's successfully gapped: 252
Length of query: 320
Length of database: 18,297,164
Length adjustment: 103
Effective length of query: 217
Effective length of database: 14,901,872
Effective search space: 3233706224
Effective search space used: 3233706224
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-004213
(960 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_034302.2| coagulation factor VII precursor [Mus musculus]. 360 1e-99
Alignment gi|NP_001229297.1| coagulation factor X isoform 1 preproprotein... 207 1e-53
Alignment gi|NP_031998.3| coagulation factor X isoform 2 preproprotein [M... 207 1e-53
Alignment gi|NP_032005.1| coagulation factor IX precursor [Mus musculus]. 202 4e-52
Alignment gi|NP_001036233.1| vitamin K-dependent protein C [Mus musculus]. 200 2e-51
Alignment gi|NP_001036232.1| vitamin K-dependent protein C [Mus musculus]. 200 2e-51
Alignment gi|NP_032960.2| vitamin K-dependent protein C [Mus musculus]. 200 2e-51
Alignment gi|NP_080110.1| vitamin K-dependent protein Z precursor [Mus mu... 149 3e-36
Alignment gi|NP_062394.2| growth arrest-specific protein 6 precursor [Mus... 106 3e-23
Alignment gi|NP_035303.1| vitamin K-dependent protein S precursor [Mus mu... 96 4e-20
>ref|NP_034302.2| coagulation factor VII precursor [Mus musculus].
Length = 446
Score = 360 bits (923), Expect = 1e-99
Identities = 159/225 (70%), Positives = 183/225 (81%), Gaps = 1/225 (0%)
Frame = +2
Query: 287 QGSLA-AVFVAQEQAHSLLHRFRRANSFLEELWPGSLERECREEQCSFEEAREIFKSEER 463
QG L AVF+ QE+AH +LHR RRANS LEELWPGSLEREC EEQCSFEEAREIFKS ER
Sbjct: 18 QGPLGTAVFITQEEAHGVLHRQRRANSLLEELWPGSLERECNEEQCSFEEAREIFKSPER 77
Query: 464 TRQFWVSYNDGDQCASNPCLNGGSCEDQLQAYICFCPEGFEGRNCETNKKSQLICMNDNG 643
T+QFW+ Y+DGDQCASNPC NGG+C+D L++Y+CFC FEGRNCE +K QLIC N+NG
Sbjct: 78 TKQFWIVYSDGDQCASNPCQNGGTCQDHLKSYVCFCLLDFEGRNCEKSKNEQLICANENG 137
Query: 644 GCEQYCSDHAEAGRSCWCHEGYALQEDGVSCEPTVEYPCGKIPVLEKRNDSNPQGRIVGG 823
C+QYC DH R+C CHE Y LQ D VSC+P VEYPCG+IPV+EKRN S+ QGRIVGG
Sbjct: 138 DCDQYCRDHVGTKRTCSCHEDYTLQPDEVSCKPKVEYPCGRIPVVEKRNSSSRQGRIVGG 197
Query: 824 KVCPKGECPWQAMLKLKGALLCGGTLLNTSWVVSAAHCFDRIRSW 958
VCPKGECPWQA+LK+ G LLCG LL+ W+V+AAHCFD IR W
Sbjct: 198 NVCPKGECPWQAVLKINGLLLCGAVLLDARWIVTAAHCFDNIRYW 242
>ref|NP_001229297.1| coagulation factor X isoform 1 preproprotein [Mus musculus].
Length = 493
Score = 207 bits (526), Expect = 1e-53
Identities = 106/259 (40%), Positives = 144/259 (55%), Gaps = 43/259 (16%)
Frame = +2
Query: 305 VFVAQEQAHSLLHRFRRANSFLEELWPGSLERECREEQCSFEEAREIFKSEERTRQFWVS 484
VF+ +E+A+++L R RRANSF EE G+LEREC EE CS+EE REIF+ +E+T+++W
Sbjct: 36 VFINRERANNVLARTRRANSFFEEFKKGNLERECMEEICSYEEVREIFEDDEKTKEYWTK 95
Query: 485 YNDGDQCASNPCLNGGSCEDQLQAYICFCPEGFEGRNCETNKKSQLICMNDNGGCEQYCS 664
Y DGDQC S+PC N G+C D + Y C C EGFEG+NCE + +C DNG C+Q+C
Sbjct: 96 YKDGDQCESSPCQNQGACRDGIGGYTCTCSEGFEGKNCELFVRK--LCRLDNGDCDQFCR 153
Query: 665 DHAEAGRSCWCHEGYALQEDGVSCEPTVEYPCGKIPVLEKR------------------- 787
+ + C C GY L DG SC T +PCGKI ++
Sbjct: 154 EE-QNSVVCSCASGYFLGNDGKSCISTAPFPCGKITTGRRKRSVALNTSDSELDLEDALL 212
Query: 788 -----------------NDSNPQG------RIVGGKVCPKGECPWQAML-KLKGALLCGG 895
N++ P+ RIVGG+ C GECPWQA+L CGG
Sbjct: 213 DEDFLSPTENPIELLNLNETQPERSSDDLVRIVGGRECKDGECPWQALLINEDNEGFCGG 272
Query: 896 TLLNTSWVVSAAHCFDRIR 952
T+LN ++++AAHC + R
Sbjct: 273 TILNEFYILTAAHCLHQAR 291
>ref|NP_031998.3| coagulation factor X isoform 2 preproprotein [Mus musculus].
Length = 481
Score = 207 bits (526), Expect = 1e-53
Identities = 106/259 (40%), Positives = 144/259 (55%), Gaps = 43/259 (16%)
Frame = +2
Query: 305 VFVAQEQAHSLLHRFRRANSFLEELWPGSLERECREEQCSFEEAREIFKSEERTRQFWVS 484
VF+ +E+A+++L R RRANSF EE G+LEREC EE CS+EE REIF+ +E+T+++W
Sbjct: 24 VFINRERANNVLARTRRANSFFEEFKKGNLERECMEEICSYEEVREIFEDDEKTKEYWTK 83
Query: 485 YNDGDQCASNPCLNGGSCEDQLQAYICFCPEGFEGRNCETNKKSQLICMNDNGGCEQYCS 664
Y DGDQC S+PC N G+C D + Y C C EGFEG+NCE + +C DNG C+Q+C
Sbjct: 84 YKDGDQCESSPCQNQGACRDGIGGYTCTCSEGFEGKNCELFVRK--LCRLDNGDCDQFCR 141
Query: 665 DHAEAGRSCWCHEGYALQEDGVSCEPTVEYPCGKIPVLEKR------------------- 787
+ + C C GY L DG SC T +PCGKI ++
Sbjct: 142 EE-QNSVVCSCASGYFLGNDGKSCISTAPFPCGKITTGRRKRSVALNTSDSELDLEDALL 200
Query: 788 -----------------NDSNPQG------RIVGGKVCPKGECPWQAML-KLKGALLCGG 895
N++ P+ RIVGG+ C GECPWQA+L CGG
Sbjct: 201 DEDFLSPTENPIELLNLNETQPERSSDDLVRIVGGRECKDGECPWQALLINEDNEGFCGG 260
Query: 896 TLLNTSWVVSAAHCFDRIR 952
T+LN ++++AAHC + R
Sbjct: 261 TILNEFYILTAAHCLHQAR 279
>ref|NP_032005.1| coagulation factor IX precursor [Mus musculus].
Length = 471
Score = 202 bits (513), Expect = 4e-52
Identities = 106/254 (41%), Positives = 137/254 (53%), Gaps = 42/254 (16%)
Frame = +2
Query: 302 AVFVAQEQAHSLLHRFRRANSF-LEELWPGSLERECREEQCSFEEAREIFKSEERTRQFW 478
AVF+ +E A +L R +R NS LEE G+LEREC EE+CSFEEARE+F++ E+T +FW
Sbjct: 29 AVFLDRENATKILTRPKRYNSGKLEEFVRGNLERECIEERCSFEEAREVFENTEKTTEFW 88
Query: 479 VSYNDGDQCASNPCLNGGSCEDQLQAYICFCPEGFEGRNCETNKKSQLICMNDNGGCEQY 658
Y DGDQC SNPCLNGG C+D + +Y C+C GFEGRNCE + C NG C+Q+
Sbjct: 89 KQYVDGDQCESNPCLNGGICKDDISSYECWCQVGFEGRNCELD----ATCNIKNGRCKQF 144
Query: 659 CSDHAEAGRSCWCHEGYALQEDGVSCEPTVEYPCGKIP---------------------- 772
C + + C C EGY L ED SCEPTV +PCG+
Sbjct: 145 CKNSPDNKVICSCTEGYQLAEDQKSCEPTVPFPCGRASISYSSKKITRAETVFSNMDYEN 204
Query: 773 -------------------VLEKRNDSNPQGRIVGGKVCPKGECPWQAMLKLKGALLCGG 895
V E N R+VGG+ G+ PWQ +L + CGG
Sbjct: 205 STEAVFIQDDITDGAILNNVTESSESLNDFTRVVGGENAKPGQIPWQVILNGEIEAFCGG 264
Query: 896 TLLNTSWVVSAAHC 937
++N W+V+AAHC
Sbjct: 265 AIINEKWIVTAAHC 278
>ref|NP_001036233.1| vitamin K-dependent protein C [Mus musculus].
Length = 460
Score = 200 bits (508), Expect = 2e-51
Identities = 105/234 (44%), Positives = 144/234 (61%), Gaps = 21/234 (8%)
Frame = +2
Query: 305 VFVAQEQAHSLLHRFRRANSFLEELWPGSLERECREEQCSFEEAREIFKSEERTRQFWVS 484
VF + E AH +L R RRANSFLEE+ PGSLEREC EE C FEEA+EIF++ E T FW+
Sbjct: 26 VFSSSEHAHQVL-RVRRANSFLEEMRPGSLERECMEEICDFEEAQEIFQNVEDTLAFWIK 84
Query: 485 YNDGDQCAS--------NPCLNGGSCEDQLQAYICFCPEGFEGRNCETNKKSQLICMNDN 640
Y DGDQC++ +PC G+C D + ++ C C +G+EG+ C+ + Q C +N
Sbjct: 85 YFDGDQCSAPPLDHQCDSPCCGHGTCIDGIGSFSCSCDKGWEGKFCQQELRFQ-DCRVNN 143
Query: 641 GGCEQYCSDHAEAGRSCWCHEGYALQEDGVSCEPTVEYPCGKI--------PVLEKRND- 793
GGC YC + + GR C C GY L +D + C+ TV +PCGK+ +L++ D
Sbjct: 144 GGCLHYCLEESN-GRRCACAPGYELADDHMRCKSTVNFPCGKLGRWIEKKRKILKRDTDL 202
Query: 794 ---SNPQGRIVGGKVCPKGECPWQA-MLKLKGALLCGGTLLNTSWVVSAAHCFD 943
P RIV G + +G+ PWQA +L K L CGG L++TSWV++AAHC +
Sbjct: 203 EDELEPDPRIVNGTLTKQGDSPWQAILLDSKKKLACGGVLIHTSWVLTAAHCVE 256
>ref|NP_001036232.1| vitamin K-dependent protein C [Mus musculus].
Length = 460
Score = 200 bits (508), Expect = 2e-51
Identities = 105/234 (44%), Positives = 144/234 (61%), Gaps = 21/234 (8%)
Frame = +2
Query: 305 VFVAQEQAHSLLHRFRRANSFLEELWPGSLERECREEQCSFEEAREIFKSEERTRQFWVS 484
VF + E AH +L R RRANSFLEE+ PGSLEREC EE C FEEA+EIF++ E T FW+
Sbjct: 26 VFSSSEHAHQVL-RVRRANSFLEEMRPGSLERECMEEICDFEEAQEIFQNVEDTLAFWIK 84
Query: 485 YNDGDQCAS--------NPCLNGGSCEDQLQAYICFCPEGFEGRNCETNKKSQLICMNDN 640
Y DGDQC++ +PC G+C D + ++ C C +G+EG+ C+ + Q C +N
Sbjct: 85 YFDGDQCSAPPLDHQCDSPCCGHGTCIDGIGSFSCSCDKGWEGKFCQQELRFQ-DCRVNN 143
Query: 641 GGCEQYCSDHAEAGRSCWCHEGYALQEDGVSCEPTVEYPCGKI--------PVLEKRND- 793
GGC YC + + GR C C GY L +D + C+ TV +PCGK+ +L++ D
Sbjct: 144 GGCLHYCLEESN-GRRCACAPGYELADDHMRCKSTVNFPCGKLGRWIEKKRKILKRDTDL 202
Query: 794 ---SNPQGRIVGGKVCPKGECPWQA-MLKLKGALLCGGTLLNTSWVVSAAHCFD 943
P RIV G + +G+ PWQA +L K L CGG L++TSWV++AAHC +
Sbjct: 203 EDELEPDPRIVNGTLTKQGDSPWQAILLDSKKKLACGGVLIHTSWVLTAAHCVE 256
>ref|NP_032960.2| vitamin K-dependent protein C [Mus musculus].
Length = 460
Score = 200 bits (508), Expect = 2e-51
Identities = 105/234 (44%), Positives = 144/234 (61%), Gaps = 21/234 (8%)
Frame = +2
Query: 305 VFVAQEQAHSLLHRFRRANSFLEELWPGSLERECREEQCSFEEAREIFKSEERTRQFWVS 484
VF + E AH +L R RRANSFLEE+ PGSLEREC EE C FEEA+EIF++ E T FW+
Sbjct: 26 VFSSSEHAHQVL-RVRRANSFLEEMRPGSLERECMEEICDFEEAQEIFQNVEDTLAFWIK 84
Query: 485 YNDGDQCAS--------NPCLNGGSCEDQLQAYICFCPEGFEGRNCETNKKSQLICMNDN 640
Y DGDQC++ +PC G+C D + ++ C C +G+EG+ C+ + Q C +N
Sbjct: 85 YFDGDQCSAPPLDHQCDSPCCGHGTCIDGIGSFSCSCDKGWEGKFCQQELRFQ-DCRVNN 143
Query: 641 GGCEQYCSDHAEAGRSCWCHEGYALQEDGVSCEPTVEYPCGKI--------PVLEKRND- 793
GGC YC + + GR C C GY L +D + C+ TV +PCGK+ +L++ D
Sbjct: 144 GGCLHYCLEESN-GRRCACAPGYELADDHMRCKSTVNFPCGKLGRWIEKKRKILKRDTDL 202
Query: 794 ---SNPQGRIVGGKVCPKGECPWQA-MLKLKGALLCGGTLLNTSWVVSAAHCFD 943
P RIV G + +G+ PWQA +L K L CGG L++TSWV++AAHC +
Sbjct: 203 EDELEPDPRIVNGTLTKQGDSPWQAILLDSKKKLACGGVLIHTSWVLTAAHCVE 256
>ref|NP_080110.1| vitamin K-dependent protein Z precursor [Mus musculus].
Length = 399
Score = 149 bits (376), Expect = 3e-36
Identities = 78/214 (36%), Positives = 119/214 (55%), Gaps = 2/214 (0%)
Frame = +2
Query: 302 AVFVAQEQAHSLLHRFRRANS-FLEELWPGSLERECREEQCSFEEAREIFKSEERTRQFW 478
+VF+ +A+++L R+RR +S FLEE++ G+LE+EC EE C++EEARE+F+++ T +FW
Sbjct: 23 SVFLPAPKANNVLRRWRRGSSYFLEEIFQGNLEKECYEEVCNYEEAREVFENDVITDEFW 82
Query: 479 VSYNDGDQCASNPCLNGGSCEDQLQAYICFCPEGFEGRNCETNKKSQLICMNDNGGCEQY 658
Y G C S PCLN G+CED +++Y C C G+EG+ C K + D GC+ +
Sbjct: 83 RQYGGGSPCVSQPCLNNGTCEDHIRSYSCTCSPGYEGKTCAMAKNECHLERTD--GCQHF 140
Query: 659 CSDHAEAGRSCWCHEGYALQEDGVSCEPTVEYPCGKIPVLEKRNDSNPQGRIVGGKVCPK 838
C ++ C C +GY L +D SC P+ + CG + R + Q +
Sbjct: 141 CHP-GQSSYMCSCAKGYKLGKDQKSCGPSDKCACGALTSEHIRMTKSSQS---------Q 190
Query: 839 GECPWQAML-KLKGALLCGGTLLNTSWVVSAAHC 937
PWQ L +G C G LL +V++ A C
Sbjct: 191 PSFPWQVRLTNSEGEDFCAGVLLQEDFVLTTAKC 224
>ref|NP_062394.2| growth arrest-specific protein 6 precursor [Mus musculus].
Length = 674
Score = 106 bits (264), Expect = 3e-23
Identities = 69/196 (35%), Positives = 92/196 (46%), Gaps = 25/196 (12%)
Frame = +2
Query: 227 PAGLAMASLRPAXXXXXXXXQGSLAAVFVAQEQAHSLLHRFRRANSFLEELWPGSLEREC 406
P G A A+L A + S + A+E A L R RRA EE G LEREC
Sbjct: 4 PPGPA-AALGTALLLLLLASESSHTVLLRAREAAQFLRPRQRRAYQVFEEAKQGHLEREC 62
Query: 407 REEQCSFEEAREIFKSEERTRQFWVSY----------------------NDGDQCASNPC 520
EE CS EEARE+F+++ T F+ Y N DQC NPC
Sbjct: 63 VEEVCSKEEAREVFENDPETEYFYPRYQECMRKYGRPEEKNPDFAKCVQNLPDQCTPNPC 122
Query: 521 LNGGS--CEDQLQAYICFCPEGFEGRNCETNKKSQLICMNDNGGCEQYCSDHAEAGR-SC 691
G+ C+D + + C C +G+ GR C+ + C+ NGGC Q C H + G C
Sbjct: 123 DKKGTHICQDLMGNFFCVCTDGWGGRLCDKDVNE---CVQKNGGCSQVC--HNKPGSFQC 177
Query: 692 WCHEGYALQEDGVSCE 739
CH G++L DG +C+
Sbjct: 178 ACHSGFSLASDGQTCQ 193
>ref|NP_035303.1| vitamin K-dependent protein S precursor [Mus musculus].
Length = 675
Score = 95.9 bits (237), Expect = 4e-20
Identities = 57/176 (32%), Positives = 81/176 (46%), Gaps = 32/176 (18%)
Frame = +2
Query: 308 FVAQEQAHSLLHRFRRANSFLEELWPGSLERECREEQCSFEEAREIFKSEERTRQFWVSY 487
F+++E+A +L R RRAN+ EE G+LEREC EE C+ EEARE+F++ T F+ Y
Sbjct: 26 FLSKERASQVLVRKRRANTLFEETMKGNLERECIEELCNKEEAREVFENNPETDYFYPKY 85
Query: 488 ND------------------------------GDQCASNPCLNGG--SCEDQLQAYICFC 571
DQC PC G +C+D A+ CFC
Sbjct: 86 LGCLGAFRVGSFHAARQSANAYPDLRSCVKAISDQCDPIPCNEDGYLACQDGQAAFTCFC 145
Query: 572 PEGFEGRNCETNKKSQLICMNDNGGCEQYCSDHAEAGRSCWCHEGYALQEDGVSCE 739
G++G C+ + N NGGC Q C D+ C C G+A+ + C+
Sbjct: 146 KPGWQGDRCQYDVNECKDPSNVNGGCSQIC-DNTPGSYHCSCKRGFAMLPNKKDCK 200
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 34,075,042
Number of extensions: 1095745
Number of successful extensions: 8276
Number of sequences better than 1.0e-05: 139
Number of HSP's gapped: 7620
Number of HSP's successfully gapped: 226
Length of query: 320
Length of database: 15,617,559
Length adjustment: 101
Effective length of query: 219
Effective length of database: 12,583,923
Effective search space: 2755879137
Effective search space used: 2755879137
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-004213
(960 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001038056.1| coagulation factor VII [Sus scrofa]. 494 e-140
Alignment gi|NP_001157475.1| coagulation factor IX [Sus scrofa]. 209 2e-54
Alignment gi|NP_001038057.1| coagulation factor X protein [Sus scrofa]. 199 1e-51
Alignment gi|NP_999083.1| vitamin K-dependent protein C [Sus scrofa]. 197 5e-51
Alignment gi|XP_003131156.2| PREDICTED: growth arrest-specific protein 6-... 95 5e-20
Alignment gi|XP_003361648.1| PREDICTED: vitamin K-dependent protein S, pa... 93 2e-19
Alignment gi|XP_003360301.1| PREDICTED: transmembrane gamma-carboxyglutam... 84 2e-16
Alignment gi|XP_003135504.1| PREDICTED: transmembrane gamma-carboxyglutam... 82 6e-16
Alignment gi|XP_003360885.1| PREDICTED: transmembrane gamma-carboxyglutam... 80 1e-15
Alignment gi|XP_003355405.1| PREDICTED: transmembrane protease serine 6-l... 77 1e-14
>ref|NP_001038056.1| coagulation factor VII [Sus scrofa].
Length = 445
Score = 494 bits (1271), Expect = e-140
Identities = 228/239 (95%), Positives = 229/239 (95%)
Frame = +2
Query: 242 MASLRPAXXXXXXXXQGSLAAVFVAQEQAHSLLHRFRRANSFLEELWPGSLERECREEQC 421
MASLRPA QGSLAAVFV E+AHSLLHRFRRANSFLEELWPGSLERECREEQC
Sbjct: 1 MASLRPALLCLLLCLQGSLAAVFVGHEEAHSLLHRFRRANSFLEELWPGSLERECREEQC 60
Query: 422 SFEEAREIFKSEERTRQFWVSYNDGDQCASNPCLNGGSCEDQLQAYICFCPEGFEGRNCE 601
SFEEAREIFKSEERTRQFWVSYNDGDQCASNPCLNGGSCEDQLQAYICFCPEGFEGRNCE
Sbjct: 61 SFEEAREIFKSEERTRQFWVSYNDGDQCASNPCLNGGSCEDQLQAYICFCPEGFEGRNCE 120
Query: 602 TNKKSQLICMNDNGGCEQYCSDHAEAGRSCWCHEGYALQEDGVSCEPTVEYPCGKIPVLE 781
TNKKSQLICMNDNGGCEQYCSDHAEAGRSCWCHEGYALQEDGVSCEPTVEYPCGKIPVLE
Sbjct: 121 TNKKSQLICMNDNGGCEQYCSDHAEAGRSCWCHEGYALQEDGVSCEPTVEYPCGKIPVLE 180
Query: 782 KRNDSNPQGRIVGGKVCPKGECPWQAMLKLKGALLCGGTLLNTSWVVSAAHCFDRIRSW 958
KRNDSNPQGRIVGGKVCPKGECPWQAMLKLKGALLCGGTLLNTSWVVSAAHCFDRIRSW
Sbjct: 181 KRNDSNPQGRIVGGKVCPKGECPWQAMLKLKGALLCGGTLLNTSWVVSAAHCFDRIRSW 239
>ref|NP_001157475.1| coagulation factor IX [Sus scrofa].
Length = 462
Score = 209 bits (531), Expect = 2e-54
Identities = 106/246 (43%), Positives = 141/246 (57%), Gaps = 33/246 (13%)
Frame = +2
Query: 305 VFVAQEQAHSLLHRFRRANSF-LEELWPGSLERECREEQCSFEEAREIFKSEERTRQFWV 481
VF+ +E A +LHR +R NS LEE G+LEREC EE+CSFEEARE+F++ E+T +FW
Sbjct: 30 VFLDRENATKILHRPKRYNSGKLEEFVRGNLERECIEEKCSFEEAREVFENTEKTNEFWK 89
Query: 482 SYNDGDQCASNPCLNGGSCEDQLQAYICFCPEGFEGRNCETNKKSQLICMNDNGGCEQYC 661
Y DGDQC NPCLNGG C+D + +Y C+C GFEG+NCE + C NG C+Q+C
Sbjct: 90 QYVDGDQCEPNPCLNGGLCKDDINSYECWCQVGFEGKNCELD----ATCNIKNGRCKQFC 145
Query: 662 SDHAEAGRSCWCHEGYALQEDGVSCEPTVEYPCGKI------------------------ 769
A++ C C GY L D SCEP V +PCG++
Sbjct: 146 KTGADSKVLCSCTTGYRLAPDQKSCEPAVPFPCGRVSVSHSPTTLTRAEIIFSNMDYENS 205
Query: 770 ----PVLEKRNDSNPQG----RIVGGKVCPKGECPWQAMLKLKGALLCGGTLLNTSWVVS 925
P+L+ +SN RIVGG+ G+ PWQ +L K CGG+++N WVV+
Sbjct: 206 TEVEPILDSLTESNQSSDDFIRIVGGENAKPGQFPWQVLLNGKIDAFCGGSIINEKWVVT 265
Query: 926 AAHCFD 943
AAHC +
Sbjct: 266 AAHCIE 271
>ref|NP_001038057.1| coagulation factor X protein [Sus scrofa].
Length = 479
Score = 199 bits (507), Expect = 1e-51
Identities = 105/263 (39%), Positives = 146/263 (55%), Gaps = 46/263 (17%)
Frame = +2
Query: 302 AVFVAQEQAHSLLHRFRRANSFLEELWPGSLERECREEQCSFEEAREIFKSEERTRQFWV 481
+VF+ +++AHS+L R RRANSF EE+ G+L+REC EE CS+EEARE+F+ +++T +FW
Sbjct: 23 SVFLPRDRAHSVLERARRANSFWEEMKKGNLKRECLEETCSYEEAREVFEDQQKTDEFWN 82
Query: 482 SYNDGDQCASNPCLNGGSCEDQLQAYICFCPEGFEGRNCETNKKSQLICMNDNGGCEQYC 661
Y DGDQC S+PC N G C+D L Y C C EGFEG+NCE ++ +C DNG C+Q+C
Sbjct: 83 KYKDGDQCESSPCQNQGKCKDGLGEYNCTCAEGFEGKNCEL--LTRKLCSLDNGDCDQFC 140
Query: 662 SDHAEAGRSCWCHEGYALQEDGVSCEPTVEYPCGK------------------------- 766
+ ++ C C GY L ++G SC T +PCGK
Sbjct: 141 REE-QSSVVCSCASGYILGDNGKSCISTEPFPCGKRTLGRSRRSANHGSEAAAEAGRSEQ 199
Query: 767 --------------------IPVLEKRNDSNPQGRIVGGKVCPKGECPWQAML-KLKGAL 883
P E+ D + RIVGG+ C +GECPWQA+L +
Sbjct: 200 EPGDLGPTEGPLHLLSLNDTEPGPEEDEDESSLVRIVGGRDCREGECPWQALLVNEENEG 259
Query: 884 LCGGTLLNTSWVVSAAHCFDRIR 952
CGGT L+ V++AAHC + +
Sbjct: 260 FCGGTTLSEFHVLTAAHCLHQAK 282
>ref|NP_999083.1| vitamin K-dependent protein C [Sus scrofa].
Length = 459
Score = 197 bits (502), Expect = 5e-51
Identities = 107/239 (44%), Positives = 139/239 (58%), Gaps = 25/239 (10%)
Frame = +2
Query: 302 AVFVAQEQAHSLLHRFRRANSFLEELWPGSLERECREEQCSFEEAREIFKSEERTRQFWV 481
+VF + ++AH +L R +RANSFLEEL P SLEREC+EE C FEEAREIF++ E T FW
Sbjct: 25 SVFSSSQRAHQML-RSKRANSFLEELRPSSLERECKEETCDFEEAREIFQNTENTMAFWS 83
Query: 482 SYNDGDQCA--------SNPCLNGGSCEDQLQAYICFCPEGFEGRNCETNKKSQLICMND 637
Y+DGDQCA +PC G+C D L + C C +G+EGR C ++ C +
Sbjct: 84 KYHDGDQCAVSPPEHLCDSPCCGRGTCIDGLGGFRCDCAQGWEGRFC-LHEVRFSNCSTE 142
Query: 638 NGGCEQYCSDHAEAGRSCWCHEGYALQEDGVSCEPTVEYPCGKI---------------- 769
NGGC YC + E GR C C GY L +D + CEP V PCG++
Sbjct: 143 NGGCAHYCLEE-EGGRRCACAPGYRLGDDHLQCEPKVRSPCGRLGNRMEKKRKNLKRDTD 201
Query: 770 PVLEKRNDSNPQGRIVGGKVCPKGECPWQA-MLKLKGALLCGGTLLNTSWVVSAAHCFD 943
V +K + +P R+V GK P GE PWQ +L K L CG L++ SWV++AAHC D
Sbjct: 202 QVDKKEDQIDP--RLVNGKQSPWGESPWQVILLDSKKKLACGAVLIHVSWVLTAAHCLD 258
>ref|XP_003131156.2| PREDICTED: growth arrest-specific protein 6-like [Sus scrofa].
Length = 718
Score = 95.1 bits (235), Expect = 5e-20
Identities = 79/251 (31%), Positives = 105/251 (41%), Gaps = 26/251 (10%)
Frame = +2
Query: 86 PSVPSPLSGSPWPGISRPRVWEASLPPPLALRDFARLPDRESQQTACPAGLAMASLRPAX 265
PS S +GS RPR LP P A P Q A P L
Sbjct: 50 PSASSEKTGSA----RRPR---RRLPRP------APAPAAPVQARAIPEVLPPGXXXXXX 96
Query: 266 XXXXXXXQGSLAAVFVAQEQAHSLLHRFRRANSFLEELWPGSLERECREEQCSFEEAREI 445
+ + + A+E A L R RRA EE G LEREC EE CS EEARE+
Sbjct: 97 XXIVLASESARTVMLRAREAAQFLRPRQRRAYQVFEEAKQGHLERECIEELCSQEEAREV 156
Query: 446 FKSEERTRQFWVSYND----------------------GDQCASNPCLNGGS--CEDQLQ 553
F+++ T F+ Y + DQC+ +PC G+ C+D +
Sbjct: 157 FENDPETEYFYPRYLECISKHGSPYTKNPDFVSCVQKLPDQCSPDPCDKEGTQVCQDLMG 216
Query: 554 AYICFCPEGFEGRNCETNKKSQLICMNDNGGCEQYCSDHAEAGRSCWCHEGYALQEDGVS 733
+ C C +G+ GR C+ + C NGGC C + C C+ GYAL D +
Sbjct: 217 NFYCQCRDGWGGRLCDRDVNE---CSQQNGGCSHVCYNKL-GSFHCACYSGYALSPDSRT 272
Query: 734 C--EPTVEYPC 760
C +P + C
Sbjct: 273 CHGDPALPVVC 283
>ref|XP_003361648.1| PREDICTED: vitamin K-dependent protein S, partial [Sus scrofa].
Length = 394
Score = 93.2 bits (230), Expect = 2e-19
Identities = 58/179 (32%), Positives = 80/179 (44%), Gaps = 32/179 (17%)
Frame = +2
Query: 311 VAQEQAHSLLHRFRRANSFLEELWPGSLERECREEQCSFEEAREIFKSEERTRQFWVSY- 487
++++ A +L R RRANS LEE G+LEREC EE CS EEARE+F+++ T F+ +Y
Sbjct: 22 LSKQHASQVLIRKRRANSMLEERKQGNLERECIEELCSKEEAREVFENDPETEYFYPAYL 81
Query: 488 -----------------------------NDGDQCASNPCLNGG--SCEDQLQAYICFCP 574
DQC PC G +C+D + C C
Sbjct: 82 ACLGSFRAGLFTAARLSTNAYPDLRSCVNAIPDQCNPLPCNEDGYLTCKDGQAMFTCICK 141
Query: 575 EGFEGRNCETNKKSQLICMNDNGGCEQYCSDHAEAGRSCWCHEGYALQEDGVSCEPTVE 751
G+EG CE + N NGGC Q C D+ C C G+ + + C+ E
Sbjct: 142 SGWEGEKCELDINECKDPANINGGCSQIC-DNTPGSYHCSCKSGFIMLSNKKDCKDVDE 199
>ref|XP_003360301.1| PREDICTED: transmembrane gamma-carboxyglutamic acid protein 1-like
[Sus scrofa].
Length = 218
Score = 83.6 bits (205), Expect = 2e-16
Identities = 41/91 (45%), Positives = 61/91 (67%)
Frame = +2
Query: 296 LAAVFVAQEQAHSLLHRFRRANSFLEELWPGSLERECREEQCSFEEAREIFKSEERTRQF 475
+ +F+ E+A+S+L R+ RAN F EE+ G++EREC+EE C+FEEARE F+++E+T++F
Sbjct: 1 MGRIFLTGEKANSVLKRYPRANGFFEEIRQGNIERECKEEVCTFEEAREAFENDEKTKEF 60
Query: 476 WVSYNDGDQCASNPCLNGGSCEDQLQAYICF 568
W +Y Q S N GS D Q Y+ F
Sbjct: 61 WSTYTKAQQGES----NRGS--DWFQFYLTF 85
>ref|XP_003135504.1| PREDICTED: transmembrane gamma-carboxyglutamic acid protein 3-like
[Sus scrofa].
Length = 332
Score = 81.6 bits (200), Expect = 6e-16
Identities = 36/75 (48%), Positives = 53/75 (70%)
Frame = +2
Query: 293 SLAAVFVAQEQAHSLLHRFRRANSFLEELWPGSLERECREEQCSFEEAREIFKSEERTRQ 472
+L++VF+ + AHS+L RF RAN FLEEL G++EREC EE CS+EE +E+F+ +E+T +
Sbjct: 100 ALSSVFLEAKNAHSVLKRFPRANEFLEELRQGTIERECMEEICSYEEVKEVFEDKEKTME 159
Query: 473 FWVSYNDGDQCASNP 517
FW Y + +P
Sbjct: 160 FWKGYPNAVYSVRDP 174
>ref|XP_003360885.1| PREDICTED: transmembrane gamma-carboxyglutamic acid protein 3-like
[Sus scrofa].
Length = 398
Score = 80.5 bits (197), Expect = 1e-15
Identities = 35/64 (54%), Positives = 48/64 (75%)
Frame = +2
Query: 296 LAAVFVAQEQAHSLLHRFRRANSFLEELWPGSLERECREEQCSFEEAREIFKSEERTRQF 475
+ AVF+ + AHS+L RF RAN FLEEL G++EREC EE CS+EE +E+F+ +E+T +F
Sbjct: 167 IRAVFLQAKNAHSVLKRFPRANEFLEELRQGTIERECMEEICSYEEVKEVFEDKEKTMEF 226
Query: 476 WVSY 487
W Y
Sbjct: 227 WKGY 230
>ref|XP_003355405.1| PREDICTED: transmembrane protease serine 6-like [Sus scrofa].
Length = 509
Score = 77.0 bits (188), Expect = 1e-14
Identities = 51/171 (29%), Positives = 70/171 (40%), Gaps = 19/171 (11%)
Frame = +2
Query: 485 YNDGDQCASN-PCLNGGSCEDQLQAYICFCPEGFEGRNCETNKKSQLICMND-------- 637
YN D C C G C + CP G + RNC Q C D
Sbjct: 150 YNQSDPCPGEFLCSVNGLCVPACDG-VKDCPNGLDERNCVCRATFQ--CQEDSTCISLSR 206
Query: 638 ---------NGGCEQYCSDHAEAGRSCW-CHEGYALQEDGVSCEPTVEYPCGKIPVLEKR 787
NG E+ C + G + C + +++ C+ + G
Sbjct: 207 VCDRQPDCLNGSDEEQCQEGVPCGTFTFQCEDRSCVKKPNPQCDGHPDCRDGSDEQHCDC 266
Query: 788 NDSNPQGRIVGGKVCPKGECPWQAMLKLKGALLCGGTLLNTSWVVSAAHCF 940
P GRIVGG V +GE PWQA L+++G +CGG L+ WV++AAHCF
Sbjct: 267 GLQGPSGRIVGGAVSSEGEWPWQASLQVRGRHICGGALIADRWVITAAHCF 317
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 25,939,609
Number of extensions: 874088
Number of successful extensions: 6992
Number of sequences better than 1.0e-05: 91
Number of HSP's gapped: 6514
Number of HSP's successfully gapped: 152
Length of query: 320
Length of database: 11,343,932
Length adjustment: 99
Effective length of query: 221
Effective length of database: 8,879,129
Effective search space: 1962287509
Effective search space used: 1962287509
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 33 (17.3 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-004213
(960 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr11 605 e-170
>Sscrofa_Chr11
|| Length = 87690581
Score = 605 bits (305), Expect = e-170
Identities = 305/305 (100%)
Strand = Plus / Minus
Query: 1 ttcccggtgcagctcccagactcacccctcaccctgcacctcaaaggagcctggctgggt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 86223609 ttcccggtgcagctcccagactcacccctcaccctgcacctcaaaggagcctggctgggt 86223550
Query: 61 gcagcctggattcccggtggcccgtccatctgtccctagtcccctgtccggcagcccttg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 86223549 gcagcctggattcccggtggcccgtccatctgtccctagtcccctgtccggcagcccttg 86223490
Query: 121 gcccgggatctcacgcccgcgtgtgtgggaggcctccctccccccgcctctggccctaag 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 86223489 gcccgggatctcacgcccgcgtgtgtgggaggcctccctccccccgcctctggccctaag 86223430
Query: 181 agactttgcccgcctccccgaccgggaaagtcaacagacggcgtgccccgcgggcctcgc 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 86223429 agactttgcccgcctccccgaccgggaaagtcaacagacggcgtgccccgcgggcctcgc 86223370
Query: 241 catggcctccctgcggccggcccttctctgcctcctcctctgcctgcaggggtccctggc 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 86223369 catggcctccctgcggccggcccttctctgcctcctcctctgcctgcaggggtccctggc 86223310
Query: 301 ggcag 305
|||||
Sbjct: 86223309 ggcag 86223305
Score = 317 bits (160), Expect = 6e-84
Identities = 163/164 (99%)
Strand = Plus / Minus
Query: 303 cagtttttgttgcccaggaacaagcccacagcctcctgcacaggttccggcgcgccaact 362
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 86222404 cagtttttgttgcccaggaacaagcccacagcctcctgcacaggttccggcgcgccaact 86222345
Query: 363 cattcctggaggagctgtggcccggctcgctggagagggagtgcagggaggagcagtgct 422
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 86222344 cattcctggaggagctgtggcccggctcgctggagagggagtgcagggaggagcagtgct 86222285
Query: 423 ccttcgaggaggcccgggagatcttcaagagtgaggagaggacg 466
||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 86222284 ccttcgaggaggcccgggagatcttcaagagcgaggagaggacg 86222241
Score = 272 bits (137), Expect = 3e-70
Identities = 140/141 (99%)
Strand = Plus / Minus
Query: 606 acaagaagagccagctgatctgcatgaatgacaacgggggctgcgagcagtactgcagcg 665
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 86219442 acaagaagagccagctgatctgcatgaatgacaacgggggctgcgagcagtactgcagcg 86219383
Query: 666 accacgcggaggccgggcgctcctgctggtgccatgaggggtacgccctccaggaggacg 725
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 86219382 accacgcggaggccgggcgctcctgctggtgccatgaggggtacgccctccaggaggatg 86219323
Query: 726 gggtgtcctgtgagcccacag 746
|||||||||||||||||||||
Sbjct: 86219322 gggtgtcctgtgagcccacag 86219302
Score = 228 bits (115), Expect = 4e-57
Identities = 115/115 (100%)
Strand = Plus / Minus
Query: 491 gacggagaccagtgcgcctcgaacccctgcctgaatgggggctcctgcgaggaccagctc 550
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 86220824 gacggagaccagtgcgcctcgaacccctgcctgaatgggggctcctgcgaggaccagctc 86220765
Query: 551 caggcctacatctgcttctgcccggaaggcttcgagggtcggaactgcgaaacca 605
|||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 86220764 caggcctacatctgcttctgcccggaaggcttcgagggtcggaactgcgaaacca 86220710
Score = 222 bits (112), Expect = 3e-55
Identities = 115/116 (99%)
Strand = Plus / Minus
Query: 742 cacagttgaatatccgtgtggaaaaatacctgttctggaaaaaagaaatgacagcaaccc 801
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 86218698 cacagttgaatatccgtgtggaaaaatacctgttctggaaaaaagaaatgacagcaaccc 86218639
Query: 802 ccagggccgaatcgtaggtggcaaggtctgccccaaaggcgagtgtccctggcagg 857
|||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 86218638 tcagggccgaatcgtaggtggcaaggtctgccccaaaggcgagtgtccctggcagg 86218583
Score = 216 bits (109), Expect = 2e-53
Identities = 115/117 (98%)
Strand = Plus / Minus
Query: 844 gtgtccctggcaggccatgctgaagctgaaaggggcgctgctgtgcgggggcaccctgct 903
|||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 86218451 gtgtccttgccaggccatgctgaagctgaaaggggcgctgctgtgcgggggcaccctgct 86218392
Query: 904 gaacaccagctgggtggtctctgcagcccactgcttcgacaggatccggagctggaa 960
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 86218391 gaacaccagctgggtggtctctgcagcccactgcttcgacaggatccggagctggaa 86218335
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 26,782,522
Number of extensions: 232
Number of successful extensions: 232
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 232
Number of HSP's successfully gapped: 6
Length of query: 960
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 939
Effective length of database: 2,808,413,156
Effective search space: 2637099953484
Effective search space used: 2637099953484
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 29 (58.0 bits)