Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-004215
(972 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_872595.1| aprataxin [Bos taurus]. 503 e-142
Alignment gi|NP_001076991.1| bifunctional polynucleotide phosphatase/kina... 72 6e-13
Alignment gi|NP_787006.1| histidine triad nucleotide-binding protein 1 [B... 55 9e-08
Alignment gi|XP_002700394.1| PREDICTED: histidine triad nucleotide bindin... 55 9e-08
Alignment gi|XP_001249593.1| PREDICTED: histidine triad nucleotide bindin... 55 9e-08
Alignment gi|NP_776766.1| histidine triad nucleotide-binding protein 3 [B... 54 2e-07
Alignment gi|XP_002697091.1| PREDICTED: histidine triad nucleotide-bindin... 50 3e-06
Alignment gi|XP_002684536.1| PREDICTED: histidine triad nucleotide-bindin... 50 3e-06
>ref|NP_872595.1| aprataxin [Bos taurus].
Length = 356
Score = 503 bits (1294), Expect = e-142
Identities = 251/317 (79%), Positives = 264/317 (83%)
Frame = +1
Query: 22 SNVSLSPSAVSR*GSCWPTSSATLLAGLKAVDVGLRIMTRVCWLVRQDSRHQRIKLPHLE 201
SNVSLS SAVSR +M RVCWLVRQD+RHQRIKLPHLE
Sbjct: 2 SNVSLSASAVSR------------------------VMMRVCWLVRQDNRHQRIKLPHLE 37
Query: 202 AVIVGRGPETKITDKKCSRQQVQLKAECNKGYVKVKQVGVNPTSIDSVIIGKDQEMKLQP 381
V+VGR PETKI DKKCSRQQVQLKAECNKGYVKVKQVGVNPTSIDSVIIGKDQE+KLQP
Sbjct: 38 TVMVGRSPETKIADKKCSRQQVQLKAECNKGYVKVKQVGVNPTSIDSVIIGKDQEVKLQP 97
Query: 382 GQVLHMVNELYPYVIEFEEEAKSPGLKTHRKRKRSGNSDSVERDASQEAKPSTGAEPGSN 561
GQVL++VNELYPY+IEFEEE KSPGL++HRKRKRSG+SD ER A EA+PSTG EPGSN
Sbjct: 98 GQVLYLVNELYPYIIEFEEETKSPGLESHRKRKRSGSSDPTERGADPEAEPSTGLEPGSN 157
Query: 562 PSQCSVPXXXXXXXXXXXXSLSHWSQGLKISMEDPKMQVYKDDQVVVIKDKYPKARYHWL 741
P QCSVP SL HWSQGLKISMEDPKMQVYKD+QVVVIKDKYPKAR+HWL
Sbjct: 158 PHQCSVPPKKEKDASIKKESLGHWSQGLKISMEDPKMQVYKDEQVVVIKDKYPKARFHWL 217
Query: 742 VLPWASISSLKAVTREHLELLRHMHTVGEKVIADFAGSSKLRFRLGYHAIPSMSHVHLHV 921
VLPWASISSLKAVTREHLELLRHMH VGEKVIADFAGSSK RFRLGYHAIPSMSHVHLHV
Sbjct: 218 VLPWASISSLKAVTREHLELLRHMHAVGEKVIADFAGSSKFRFRLGYHAIPSMSHVHLHV 277
Query: 922 ISQDFDSPCPKNKKHWN 972
ISQDFDSPC KNKKHWN
Sbjct: 278 ISQDFDSPCLKNKKHWN 294
>ref|NP_001076991.1| bifunctional polynucleotide phosphatase/kinase [Bos taurus].
Length = 194
Score = 72.4 bits (176), Expect = 6e-13
Identities = 42/121 (34%), Positives = 69/121 (57%), Gaps = 4/121 (3%)
Frame = +1
Query: 199 EAVIVGRGPETKITDKKCSRQQVQLKAECNKGYVKVKQVGVNPTSIDSVIIGKDQEMKLQ 378
+A+++GRGP T++TD+KCSR QV+L A+ V VKQ+GVNP++ + + + L
Sbjct: 29 QALVLGRGPLTQVTDRKCSRNQVELVADPETRTVAVKQLGVNPSTAGTQELRPGLKGALG 88
Query: 379 PGQVLHMVNELYPYVIEFEE----EAKSPGLKTHRKRKRSGNSDSVERDASQEAKPSTGA 546
G L++VN L+P + +EE E++ + R G ++VE+ + K S G
Sbjct: 89 VGDTLYLVNGLHPLTLRWEEALTPESQPDTPPSTPPVTREGEEENVEQQKKRIRKSSPGW 148
Query: 547 E 549
E
Sbjct: 149 E 149
>ref|NP_787006.1| histidine triad nucleotide-binding protein 1 [Bos taurus].
Length = 126
Score = 55.1 bits (131), Expect = 9e-08
Identities = 35/97 (36%), Positives = 48/97 (49%), Gaps = 2/97 (2%)
Frame = +1
Query: 640 GLKISMEDPKMQVYKDDQVVVIKDKYPKARYHWLVLPWASISSLKAVTREHLELLRHMHT 819
G I E P +Y+DDQ + D P+A H+LV+P IS + A + LL H+
Sbjct: 20 GKIIRKEIPAKIIYEDDQCLAFHDISPQAPTHFLVIPKKYISEISAAEDDDESLLGHLMI 79
Query: 820 VGEKVIADFAGSSKLRFRL--GYHAIPSMSHVHLHVI 924
VG+K AD R + G S+ HVHLHV+
Sbjct: 80 VGKKCAADLGLKKGYRMVVNEGSDGGQSVYHVHLHVL 116
>ref|XP_002700394.1| PREDICTED: histidine triad nucleotide binding protein 1-like [Bos
taurus].
Length = 126
Score = 55.1 bits (131), Expect = 9e-08
Identities = 35/97 (36%), Positives = 48/97 (49%), Gaps = 2/97 (2%)
Frame = +1
Query: 640 GLKISMEDPKMQVYKDDQVVVIKDKYPKARYHWLVLPWASISSLKAVTREHLELLRHMHT 819
G I E P +Y+DDQ + D P+A H+LV+P IS + A + LL H+
Sbjct: 20 GKIIRREIPAKIIYEDDQCLAFHDISPQAPTHFLVIPKKYISQISAAEDDDESLLGHLMI 79
Query: 820 VGEKVIADFAGSSKLRFRL--GYHAIPSMSHVHLHVI 924
VG+K AD R + G S+ HVHLHV+
Sbjct: 80 VGKKCAADLGLKKGYRMVVNEGSDGGQSVYHVHLHVL 116
>ref|XP_001249593.1| PREDICTED: histidine triad nucleotide binding protein 1 [Bos
taurus].
Length = 126
Score = 55.1 bits (131), Expect = 9e-08
Identities = 35/97 (36%), Positives = 48/97 (49%), Gaps = 2/97 (2%)
Frame = +1
Query: 640 GLKISMEDPKMQVYKDDQVVVIKDKYPKARYHWLVLPWASISSLKAVTREHLELLRHMHT 819
G I E P +Y+DDQ + D P+A H+LV+P IS + A + LL H+
Sbjct: 20 GKIIRREIPAKIIYEDDQCLAFHDISPQAPTHFLVIPKKYISQISAAEDDDESLLGHLMI 79
Query: 820 VGEKVIADFAGSSKLRFRL--GYHAIPSMSHVHLHVI 924
VG+K AD R + G S+ HVHLHV+
Sbjct: 80 VGKKCAADLGLKKGYRMVVNEGSDGGQSVYHVHLHVL 116
>ref|NP_776766.1| histidine triad nucleotide-binding protein 3 [Bos taurus].
Length = 182
Score = 54.3 bits (129), Expect = 2e-07
Identities = 28/94 (29%), Positives = 56/94 (59%), Gaps = 4/94 (4%)
Frame = +1
Query: 658 EDPKMQVY--KDDQVVVIKDKYPKARYHWLVLPWASISSLKAVTREHLELLRHMHTVGEK 831
+DP ++ +++ +V KD P A +H+LV+P + K + ++ +EL+ +M TVG+
Sbjct: 57 QDPGTELLHCENEDLVCFKDIKPAAPHHYLVVPKKHFENCKYLKKDQIELIENMVTVGKA 116
Query: 832 VIADFAGSSKLRFRLGYHAIP--SMSHVHLHVIS 927
++ + R+G+H P S++H+HLHV++
Sbjct: 117 ILERNNFTDFENTRMGFHVSPFCSIAHLHLHVLA 150
>ref|XP_002697091.1| PREDICTED: histidine triad nucleotide-binding protein 1-like [Bos
taurus].
Length = 125
Score = 50.1 bits (118), Expect = 3e-06
Identities = 34/100 (34%), Positives = 46/100 (46%), Gaps = 8/100 (8%)
Frame = +1
Query: 649 ISMEDPKMQVYKDDQVVVIKDKYPKARYHWLVLPWASISSLKAVTREHLELLRHMHTVGE 828
I E P +YKDDQ D P+A H+LV+P IS + A + L H+ VG+
Sbjct: 23 IHKEIPTKIIYKDDQCFAFLDISPQAPTHFLVIPKKHISQISAAADDDESPLGHLMIVGK 82
Query: 829 KVIADFAGSSKLRFRLGYHAI--------PSMSHVHLHVI 924
K A L + GY + S+ HVHLHV+
Sbjct: 83 KCAA------HLGLKKGYQMVVNEGSDWGQSVYHVHLHVL 116
>ref|XP_002684536.1| PREDICTED: histidine triad nucleotide-binding protein 1-like [Bos
taurus].
Length = 125
Score = 50.1 bits (118), Expect = 3e-06
Identities = 34/100 (34%), Positives = 46/100 (46%), Gaps = 8/100 (8%)
Frame = +1
Query: 649 ISMEDPKMQVYKDDQVVVIKDKYPKARYHWLVLPWASISSLKAVTREHLELLRHMHTVGE 828
I E P +YKDDQ D P+A H+LV+P IS + A + L H+ VG+
Sbjct: 23 IHKEIPTKIIYKDDQCFAFLDISPQAPTHFLVIPKKHISQISAAADDDESPLGHLMIVGK 82
Query: 829 KVIADFAGSSKLRFRLGYHAI--------PSMSHVHLHVI 924
K A L + GY + S+ HVHLHV+
Sbjct: 83 KCAA------HLGLKKGYQMVVNEGSDWGQSVYHVHLHVL 116
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 38,275,699
Number of extensions: 1082673
Number of successful extensions: 3245
Number of sequences better than 1.0e-05: 8
Number of HSP's gapped: 3236
Number of HSP's successfully gapped: 8
Length of query: 324
Length of database: 17,681,374
Length adjustment: 102
Effective length of query: 222
Effective length of database: 14,306,398
Effective search space: 3176020356
Effective search space used: 3176020356
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-004215
(972 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001003355.1| aprataxin [Canis lupus familiaris]. 504 e-143
Alignment gi|XP_541488.2| PREDICTED: similar to polynucleotide kinase 3-p... 72 6e-13
Alignment gi|XP_863630.1| PREDICTED: similar to polynucleotide kinase 3-p... 72 6e-13
Alignment gi|XP_533489.2| PREDICTED: similar to histidine triad nucleotid... 54 2e-07
Alignment gi|XP_531895.2| PREDICTED: similar to histidine triad nucleotid... 52 7e-07
Alignment gi|XP_850967.1| PREDICTED: similar to histidine triad nucleotid... 50 2e-06
>ref|NP_001003355.1| aprataxin [Canis lupus familiaris].
Length = 342
Score = 504 bits (1299), Expect = e-143
Identities = 242/280 (86%), Positives = 259/280 (92%)
Frame = +1
Query: 133 MTRVCWLVRQDSRHQRIKLPHLEAVIVGRGPETKITDKKCSRQQVQLKAECNKGYVKVKQ 312
M R+CWLVRQD++HQRIKLPHLEAV+VGRGPETKI DKKCSRQQVQLKAECNKGYVKVKQ
Sbjct: 1 MMRMCWLVRQDNQHQRIKLPHLEAVMVGRGPETKIIDKKCSRQQVQLKAECNKGYVKVKQ 60
Query: 313 VGVNPTSIDSVIIGKDQEMKLQPGQVLHMVNELYPYVIEFEEEAKSPGLKTHRKRKRSGN 492
VGVNPTSIDSVIIGKDQE KLQPGQVLHMVNELYPY++EFEEEA+SPGL+THRKRKRSGN
Sbjct: 61 VGVNPTSIDSVIIGKDQEAKLQPGQVLHMVNELYPYIVEFEEEAESPGLETHRKRKRSGN 120
Query: 493 SDSVERDASQEAKPSTGAEPGSNPSQCSVPXXXXXXXXXXXXSLSHWSQGLKISMEDPKM 672
SDS+ERDA+QEA+ STG EPGS+ SQCSVP SL HWSQGLKISM+DPKM
Sbjct: 121 SDSIERDAAQEAESSTGLEPGSDSSQCSVPLNKGKDAPTKKESLGHWSQGLKISMQDPKM 180
Query: 673 QVYKDDQVVVIKDKYPKARYHWLVLPWASISSLKAVTREHLELLRHMHTVGEKVIADFAG 852
QVYKD+QVVVIKDKYPKARYHWLVLPWAS+SSLKAVT EHLELL+HMHTVGEK+IADFAG
Sbjct: 181 QVYKDEQVVVIKDKYPKARYHWLVLPWASVSSLKAVTGEHLELLKHMHTVGEKMIADFAG 240
Query: 853 SSKLRFRLGYHAIPSMSHVHLHVISQDFDSPCPKNKKHWN 972
SSKLRFRLGYHAIPSMSHVHLHVISQDFDSPC KNKKHWN
Sbjct: 241 SSKLRFRLGYHAIPSMSHVHLHVISQDFDSPCLKNKKHWN 280
>ref|XP_541488.2| PREDICTED: similar to polynucleotide kinase 3-phosphatase isoform 1
[Canis familiaris].
Length = 521
Score = 72.4 bits (176), Expect = 6e-13
Identities = 35/85 (41%), Positives = 57/85 (67%)
Frame = +1
Query: 199 EAVIVGRGPETKITDKKCSRQQVQLKAECNKGYVKVKQVGVNPTSIDSVIIGKDQEMKLQ 378
+A+++GRGP T++TD+KCSR QV+L A V VKQ+G+NP++ + + E L+
Sbjct: 29 QALVLGRGPLTQVTDRKCSRNQVELVANPRTRTVAVKQLGINPSTAGTQELSPGSEGSLR 88
Query: 379 PGQVLHMVNELYPYVIEFEEEAKSP 453
G L++VN L+P + + EEA++P
Sbjct: 89 VGDTLYLVNGLHPLTLRW-EEARTP 112
>ref|XP_863630.1| PREDICTED: similar to polynucleotide kinase 3-phosphatase isoform 2
[Canis familiaris].
Length = 498
Score = 72.4 bits (176), Expect = 6e-13
Identities = 35/85 (41%), Positives = 57/85 (67%)
Frame = +1
Query: 199 EAVIVGRGPETKITDKKCSRQQVQLKAECNKGYVKVKQVGVNPTSIDSVIIGKDQEMKLQ 378
+A+++GRGP T++TD+KCSR QV+L A V VKQ+G+NP++ + + E L+
Sbjct: 29 QALVLGRGPLTQVTDRKCSRNQVELVANPRTRTVAVKQLGINPSTAGTQELSPGSEGSLR 88
Query: 379 PGQVLHMVNELYPYVIEFEEEAKSP 453
G L++VN L+P + + EEA++P
Sbjct: 89 VGDTLYLVNGLHPLTLRW-EEARTP 112
>ref|XP_533489.2| PREDICTED: similar to histidine triad nucleotide binding protein 3
[Canis familiaris].
Length = 139
Score = 54.3 bits (129), Expect = 2e-07
Identities = 26/83 (31%), Positives = 50/83 (60%), Gaps = 2/83 (2%)
Frame = +1
Query: 685 DDQVVVIKDKYPKARYHWLVLPWASISSLKAVTREHLELLRHMHTVGEKVIADFAGSSKL 864
++ +V KD P A +H+LV+P + + + + ++H+EL+ M VG+ ++ +
Sbjct: 25 NEDLVCFKDIKPAAPHHYLVVPKKHLGNCRELKKDHIELVESMVAVGKTILERNNFTDFK 84
Query: 865 RFRLGYHAIP--SMSHVHLHVIS 927
R+G+H P S+SH+HLHV++
Sbjct: 85 NARMGFHMPPFCSISHLHLHVLA 107
>ref|XP_531895.2| PREDICTED: similar to histidine triad nucleotide binding protein 1
[Canis familiaris].
Length = 126
Score = 52.4 bits (124), Expect = 7e-07
Identities = 33/97 (34%), Positives = 47/97 (48%), Gaps = 2/97 (2%)
Frame = +1
Query: 640 GLKISMEDPKMQVYKDDQVVVIKDKYPKARYHWLVLPWASISSLKAVTREHLELLRHMHT 819
G I E P +++DDQ + D P+A H+LV+P IS + + LL H+
Sbjct: 20 GKIIRKEIPAKIIFEDDQCLAFHDISPQAPTHFLVIPKKHISQISVAEDDDESLLGHLMI 79
Query: 820 VGEKVIADFAGSSKLRFRL--GYHAIPSMSHVHLHVI 924
VG+K AD R + G S+ HVHLHV+
Sbjct: 80 VGKKCAADLGLKKGYRMVVNEGSDGGQSVYHVHLHVL 116
>ref|XP_850967.1| PREDICTED: similar to histidine triad nucleotide binding protein 1
[Canis familiaris].
Length = 167
Score = 50.4 bits (119), Expect = 2e-06
Identities = 31/94 (32%), Positives = 46/94 (48%), Gaps = 2/94 (2%)
Frame = +1
Query: 649 ISMEDPKMQVYKDDQVVVIKDKYPKARYHWLVLPWASISSLKAVTREHLELLRHMHTVGE 828
I E P +++DDQ + D P+A H+LV+P IS + + LL H+ VG+
Sbjct: 64 IRKEIPAKIIFEDDQCIAFHDISPQAPTHFLVIPKKHISQISVAEDDDESLLGHLMIVGK 123
Query: 829 KVIADFAGSSKLRFRL--GYHAIPSMSHVHLHVI 924
K A + R + G S+ HVHLHV+
Sbjct: 124 KCAAHLGLKNYYRMVVNEGSDGGQSVYHVHLHVL 157
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 39,799,055
Number of extensions: 1110057
Number of successful extensions: 3350
Number of sequences better than 1.0e-05: 6
Number of HSP's gapped: 3344
Number of HSP's successfully gapped: 6
Length of query: 324
Length of database: 18,874,504
Length adjustment: 103
Effective length of query: 221
Effective length of database: 15,440,896
Effective search space: 3412438016
Effective search space used: 3412438016
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-004215
(972 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_778239.1| aprataxin isoform b [Homo sapiens]. 512 e-145
Alignment gi|NP_001182177.1| aprataxin isoform e [Homo sapiens]. 512 e-145
Alignment gi|NP_001182180.1| aprataxin isoform g [Homo sapiens]. 509 e-144
Alignment gi|NP_001182178.1| aprataxin isoform a [Homo sapiens]. 509 e-144
Alignment gi|NP_778243.1| aprataxin isoform a [Homo sapiens]. 509 e-144
Alignment gi|NP_001182179.1| aprataxin isoform f [Homo sapiens]. 347 1e-95
Alignment gi|NP_001182183.1| aprataxin isoform h [Homo sapiens]. 343 1e-94
Alignment gi|NP_001182181.1| aprataxin isoform i [Homo sapiens]. 261 7e-70
Alignment gi|NP_009185.2| bifunctional polynucleotide phosphatase/kinase ... 72 1e-12
Alignment gi|NP_612638.3| histidine triad nucleotide-binding protein 3 [H... 56 4e-08
>ref|NP_778239.1| aprataxin isoform b [Homo sapiens].
Length = 306
Score = 512 bits (1318), Expect = e-145
Identities = 243/282 (86%), Positives = 259/282 (91%)
Frame = +1
Query: 127 RIMTRVCWLVRQDSRHQRIKLPHLEAVIVGRGPETKITDKKCSRQQVQLKAECNKGYVKV 306
R+M RVCWLVRQDSRHQRI+LPHLEAV++GRGPETKITDKKCSRQQVQLKAECNKGYVKV
Sbjct: 13 RVMMRVCWLVRQDSRHQRIRLPHLEAVVIGRGPETKITDKKCSRQQVQLKAECNKGYVKV 72
Query: 307 KQVGVNPTSIDSVIIGKDQEMKLQPGQVLHMVNELYPYVIEFEEEAKSPGLKTHRKRKRS 486
KQVGVNPTSIDSV+IGKDQE+KLQPGQVLHMVNELYPY++EFEEEAK+PGL+THRKRKRS
Sbjct: 73 KQVGVNPTSIDSVVIGKDQEVKLQPGQVLHMVNELYPYIVEFEEEAKNPGLETHRKRKRS 132
Query: 487 GNSDSVERDASQEAKPSTGAEPGSNPSQCSVPXXXXXXXXXXXXSLSHWSQGLKISMEDP 666
GNSDS+ERDA+QEA+ TG EPGSN QCSVP SL HWSQGLKISM+DP
Sbjct: 133 GNSDSIERDAAQEAEAGTGLEPGSNSGQCSVPLKKGKDAPIKKESLGHWSQGLKISMQDP 192
Query: 667 KMQVYKDDQVVVIKDKYPKARYHWLVLPWASISSLKAVTREHLELLRHMHTVGEKVIADF 846
KMQVYKD+QVVVIKDKYPKARYHWLVLPW SISSLKAV REHLELL+HMHTVGEKVI DF
Sbjct: 193 KMQVYKDEQVVVIKDKYPKARYHWLVLPWTSISSLKAVAREHLELLKHMHTVGEKVIVDF 252
Query: 847 AGSSKLRFRLGYHAIPSMSHVHLHVISQDFDSPCPKNKKHWN 972
AGSSKLRFRLGYHAIPSMSHVHLHVISQDFDSPC KNKKHWN
Sbjct: 253 AGSSKLRFRLGYHAIPSMSHVHLHVISQDFDSPCLKNKKHWN 294
>ref|NP_001182177.1| aprataxin isoform e [Homo sapiens].
Length = 356
Score = 512 bits (1318), Expect = e-145
Identities = 243/282 (86%), Positives = 259/282 (91%)
Frame = +1
Query: 127 RIMTRVCWLVRQDSRHQRIKLPHLEAVIVGRGPETKITDKKCSRQQVQLKAECNKGYVKV 306
R+M RVCWLVRQDSRHQRI+LPHLEAV++GRGPETKITDKKCSRQQVQLKAECNKGYVKV
Sbjct: 13 RVMMRVCWLVRQDSRHQRIRLPHLEAVVIGRGPETKITDKKCSRQQVQLKAECNKGYVKV 72
Query: 307 KQVGVNPTSIDSVIIGKDQEMKLQPGQVLHMVNELYPYVIEFEEEAKSPGLKTHRKRKRS 486
KQVGVNPTSIDSV+IGKDQE+KLQPGQVLHMVNELYPY++EFEEEAK+PGL+THRKRKRS
Sbjct: 73 KQVGVNPTSIDSVVIGKDQEVKLQPGQVLHMVNELYPYIVEFEEEAKNPGLETHRKRKRS 132
Query: 487 GNSDSVERDASQEAKPSTGAEPGSNPSQCSVPXXXXXXXXXXXXSLSHWSQGLKISMEDP 666
GNSDS+ERDA+QEA+ TG EPGSN QCSVP SL HWSQGLKISM+DP
Sbjct: 133 GNSDSIERDAAQEAEAGTGLEPGSNSGQCSVPLKKGKDAPIKKESLGHWSQGLKISMQDP 192
Query: 667 KMQVYKDDQVVVIKDKYPKARYHWLVLPWASISSLKAVTREHLELLRHMHTVGEKVIADF 846
KMQVYKD+QVVVIKDKYPKARYHWLVLPW SISSLKAV REHLELL+HMHTVGEKVI DF
Sbjct: 193 KMQVYKDEQVVVIKDKYPKARYHWLVLPWTSISSLKAVAREHLELLKHMHTVGEKVIVDF 252
Query: 847 AGSSKLRFRLGYHAIPSMSHVHLHVISQDFDSPCPKNKKHWN 972
AGSSKLRFRLGYHAIPSMSHVHLHVISQDFDSPC KNKKHWN
Sbjct: 253 AGSSKLRFRLGYHAIPSMSHVHLHVISQDFDSPCLKNKKHWN 294
>ref|NP_001182180.1| aprataxin isoform g [Homo sapiens].
Length = 292
Score = 509 bits (1310), Expect = e-144
Identities = 242/280 (86%), Positives = 257/280 (91%)
Frame = +1
Query: 133 MTRVCWLVRQDSRHQRIKLPHLEAVIVGRGPETKITDKKCSRQQVQLKAECNKGYVKVKQ 312
M RVCWLVRQDSRHQRI+LPHLEAV++GRGPETKITDKKCSRQQVQLKAECNKGYVKVKQ
Sbjct: 1 MMRVCWLVRQDSRHQRIRLPHLEAVVIGRGPETKITDKKCSRQQVQLKAECNKGYVKVKQ 60
Query: 313 VGVNPTSIDSVIIGKDQEMKLQPGQVLHMVNELYPYVIEFEEEAKSPGLKTHRKRKRSGN 492
VGVNPTSIDSV+IGKDQE+KLQPGQVLHMVNELYPY++EFEEEAK+PGL+THRKRKRSGN
Sbjct: 61 VGVNPTSIDSVVIGKDQEVKLQPGQVLHMVNELYPYIVEFEEEAKNPGLETHRKRKRSGN 120
Query: 493 SDSVERDASQEAKPSTGAEPGSNPSQCSVPXXXXXXXXXXXXSLSHWSQGLKISMEDPKM 672
SDS+ERDA+QEA+ TG EPGSN QCSVP SL HWSQGLKISM+DPKM
Sbjct: 121 SDSIERDAAQEAEAGTGLEPGSNSGQCSVPLKKGKDAPIKKESLGHWSQGLKISMQDPKM 180
Query: 673 QVYKDDQVVVIKDKYPKARYHWLVLPWASISSLKAVTREHLELLRHMHTVGEKVIADFAG 852
QVYKD+QVVVIKDKYPKARYHWLVLPW SISSLKAV REHLELL+HMHTVGEKVI DFAG
Sbjct: 181 QVYKDEQVVVIKDKYPKARYHWLVLPWTSISSLKAVAREHLELLKHMHTVGEKVIVDFAG 240
Query: 853 SSKLRFRLGYHAIPSMSHVHLHVISQDFDSPCPKNKKHWN 972
SSKLRFRLGYHAIPSMSHVHLHVISQDFDSPC KNKKHWN
Sbjct: 241 SSKLRFRLGYHAIPSMSHVHLHVISQDFDSPCLKNKKHWN 280
>ref|NP_001182178.1| aprataxin isoform a [Homo sapiens].
Length = 342
Score = 509 bits (1310), Expect = e-144
Identities = 242/280 (86%), Positives = 257/280 (91%)
Frame = +1
Query: 133 MTRVCWLVRQDSRHQRIKLPHLEAVIVGRGPETKITDKKCSRQQVQLKAECNKGYVKVKQ 312
M RVCWLVRQDSRHQRI+LPHLEAV++GRGPETKITDKKCSRQQVQLKAECNKGYVKVKQ
Sbjct: 1 MMRVCWLVRQDSRHQRIRLPHLEAVVIGRGPETKITDKKCSRQQVQLKAECNKGYVKVKQ 60
Query: 313 VGVNPTSIDSVIIGKDQEMKLQPGQVLHMVNELYPYVIEFEEEAKSPGLKTHRKRKRSGN 492
VGVNPTSIDSV+IGKDQE+KLQPGQVLHMVNELYPY++EFEEEAK+PGL+THRKRKRSGN
Sbjct: 61 VGVNPTSIDSVVIGKDQEVKLQPGQVLHMVNELYPYIVEFEEEAKNPGLETHRKRKRSGN 120
Query: 493 SDSVERDASQEAKPSTGAEPGSNPSQCSVPXXXXXXXXXXXXSLSHWSQGLKISMEDPKM 672
SDS+ERDA+QEA+ TG EPGSN QCSVP SL HWSQGLKISM+DPKM
Sbjct: 121 SDSIERDAAQEAEAGTGLEPGSNSGQCSVPLKKGKDAPIKKESLGHWSQGLKISMQDPKM 180
Query: 673 QVYKDDQVVVIKDKYPKARYHWLVLPWASISSLKAVTREHLELLRHMHTVGEKVIADFAG 852
QVYKD+QVVVIKDKYPKARYHWLVLPW SISSLKAV REHLELL+HMHTVGEKVI DFAG
Sbjct: 181 QVYKDEQVVVIKDKYPKARYHWLVLPWTSISSLKAVAREHLELLKHMHTVGEKVIVDFAG 240
Query: 853 SSKLRFRLGYHAIPSMSHVHLHVISQDFDSPCPKNKKHWN 972
SSKLRFRLGYHAIPSMSHVHLHVISQDFDSPC KNKKHWN
Sbjct: 241 SSKLRFRLGYHAIPSMSHVHLHVISQDFDSPCLKNKKHWN 280
>ref|NP_778243.1| aprataxin isoform a [Homo sapiens].
Length = 342
Score = 509 bits (1310), Expect = e-144
Identities = 242/280 (86%), Positives = 257/280 (91%)
Frame = +1
Query: 133 MTRVCWLVRQDSRHQRIKLPHLEAVIVGRGPETKITDKKCSRQQVQLKAECNKGYVKVKQ 312
M RVCWLVRQDSRHQRI+LPHLEAV++GRGPETKITDKKCSRQQVQLKAECNKGYVKVKQ
Sbjct: 1 MMRVCWLVRQDSRHQRIRLPHLEAVVIGRGPETKITDKKCSRQQVQLKAECNKGYVKVKQ 60
Query: 313 VGVNPTSIDSVIIGKDQEMKLQPGQVLHMVNELYPYVIEFEEEAKSPGLKTHRKRKRSGN 492
VGVNPTSIDSV+IGKDQE+KLQPGQVLHMVNELYPY++EFEEEAK+PGL+THRKRKRSGN
Sbjct: 61 VGVNPTSIDSVVIGKDQEVKLQPGQVLHMVNELYPYIVEFEEEAKNPGLETHRKRKRSGN 120
Query: 493 SDSVERDASQEAKPSTGAEPGSNPSQCSVPXXXXXXXXXXXXSLSHWSQGLKISMEDPKM 672
SDS+ERDA+QEA+ TG EPGSN QCSVP SL HWSQGLKISM+DPKM
Sbjct: 121 SDSIERDAAQEAEAGTGLEPGSNSGQCSVPLKKGKDAPIKKESLGHWSQGLKISMQDPKM 180
Query: 673 QVYKDDQVVVIKDKYPKARYHWLVLPWASISSLKAVTREHLELLRHMHTVGEKVIADFAG 852
QVYKD+QVVVIKDKYPKARYHWLVLPW SISSLKAV REHLELL+HMHTVGEKVI DFAG
Sbjct: 181 QVYKDEQVVVIKDKYPKARYHWLVLPWTSISSLKAVAREHLELLKHMHTVGEKVIVDFAG 240
Query: 853 SSKLRFRLGYHAIPSMSHVHLHVISQDFDSPCPKNKKHWN 972
SSKLRFRLGYHAIPSMSHVHLHVISQDFDSPC KNKKHWN
Sbjct: 241 SSKLRFRLGYHAIPSMSHVHLHVISQDFDSPCLKNKKHWN 280
>ref|NP_001182179.1| aprataxin isoform f [Homo sapiens].
Length = 302
Score = 347 bits (889), Expect = 1e-95
Identities = 180/282 (63%), Positives = 194/282 (68%)
Frame = +1
Query: 127 RIMTRVCWLVRQDSRHQRIKLPHLEAVIVGRGPETKITDKKCSRQQVQLKAECNKGYVKV 306
R+M RVCWLVRQDSRHQRI+LPHLEA
Sbjct: 13 RVMMRVCWLVRQDSRHQRIRLPHLEA---------------------------------- 38
Query: 307 KQVGVNPTSIDSVIIGKDQEMKLQPGQVLHMVNELYPYVIEFEEEAKSPGLKTHRKRKRS 486
V+IG+ E K+ + EFEEEAK+PGL+THRKRKRS
Sbjct: 39 ------------VVIGRGPETKITDKKCSRQQ--------EFEEEAKNPGLETHRKRKRS 78
Query: 487 GNSDSVERDASQEAKPSTGAEPGSNPSQCSVPXXXXXXXXXXXXSLSHWSQGLKISMEDP 666
GNSDS+ERDA+QEA+ TG EPGSN QCSVP SL HWSQGLKISM+DP
Sbjct: 79 GNSDSIERDAAQEAEAGTGLEPGSNSGQCSVPLKKGKDAPIKKESLGHWSQGLKISMQDP 138
Query: 667 KMQVYKDDQVVVIKDKYPKARYHWLVLPWASISSLKAVTREHLELLRHMHTVGEKVIADF 846
KMQVYKD+QVVVIKDKYPKARYHWLVLPW SISSLKAV REHLELL+HMHTVGEKVI DF
Sbjct: 139 KMQVYKDEQVVVIKDKYPKARYHWLVLPWTSISSLKAVAREHLELLKHMHTVGEKVIVDF 198
Query: 847 AGSSKLRFRLGYHAIPSMSHVHLHVISQDFDSPCPKNKKHWN 972
AGSSKLRFRLGYHAIPSMSHVHLHVISQDFDSPC KNKKHWN
Sbjct: 199 AGSSKLRFRLGYHAIPSMSHVHLHVISQDFDSPCLKNKKHWN 240
>ref|NP_001182183.1| aprataxin isoform h [Homo sapiens].
Length = 288
Score = 343 bits (881), Expect = 1e-94
Identities = 179/280 (63%), Positives = 192/280 (68%)
Frame = +1
Query: 133 MTRVCWLVRQDSRHQRIKLPHLEAVIVGRGPETKITDKKCSRQQVQLKAECNKGYVKVKQ 312
M RVCWLVRQDSRHQRI+LPHLEA
Sbjct: 1 MMRVCWLVRQDSRHQRIRLPHLEA------------------------------------ 24
Query: 313 VGVNPTSIDSVIIGKDQEMKLQPGQVLHMVNELYPYVIEFEEEAKSPGLKTHRKRKRSGN 492
V+IG+ E K+ + EFEEEAK+PGL+THRKRKRSGN
Sbjct: 25 ----------VVIGRGPETKITDKKCSRQQ--------EFEEEAKNPGLETHRKRKRSGN 66
Query: 493 SDSVERDASQEAKPSTGAEPGSNPSQCSVPXXXXXXXXXXXXSLSHWSQGLKISMEDPKM 672
SDS+ERDA+QEA+ TG EPGSN QCSVP SL HWSQGLKISM+DPKM
Sbjct: 67 SDSIERDAAQEAEAGTGLEPGSNSGQCSVPLKKGKDAPIKKESLGHWSQGLKISMQDPKM 126
Query: 673 QVYKDDQVVVIKDKYPKARYHWLVLPWASISSLKAVTREHLELLRHMHTVGEKVIADFAG 852
QVYKD+QVVVIKDKYPKARYHWLVLPW SISSLKAV REHLELL+HMHTVGEKVI DFAG
Sbjct: 127 QVYKDEQVVVIKDKYPKARYHWLVLPWTSISSLKAVAREHLELLKHMHTVGEKVIVDFAG 186
Query: 853 SSKLRFRLGYHAIPSMSHVHLHVISQDFDSPCPKNKKHWN 972
SSKLRFRLGYHAIPSMSHVHLHVISQDFDSPC KNKKHWN
Sbjct: 187 SSKLRFRLGYHAIPSMSHVHLHVISQDFDSPCLKNKKHWN 226
>ref|NP_001182181.1| aprataxin isoform i [Homo sapiens].
Length = 284
Score = 261 bits (667), Expect = 7e-70
Identities = 148/282 (52%), Positives = 164/282 (58%)
Frame = +1
Query: 127 RIMTRVCWLVRQDSRHQRIKLPHLEAVIVGRGPETKITDKKCSRQQVQLKAECNKGYVKV 306
R+M RVCWLVRQDSRHQRI+LPHLEA
Sbjct: 13 RVMMRVCWLVRQDSRHQRIRLPHLEA---------------------------------- 38
Query: 307 KQVGVNPTSIDSVIIGKDQEMKLQPGQVLHMVNELYPYVIEFEEEAKSPGLKTHRKRKRS 486
V+IG+ E K+ + ++ + E +K +
Sbjct: 39 ------------VVIGRGPETKITDKKCSRQQ-------VQLKAECNKGYVKVKQVGVNP 79
Query: 487 GNSDSVERDASQEAKPSTGAEPGSNPSQCSVPXXXXXXXXXXXXSLSHWSQGLKISMEDP 666
+ DSV QE K +PG SL HWSQGLKISM+DP
Sbjct: 80 TSIDSVVIGKDQEVK----LQPGQ---------------VLHMESLGHWSQGLKISMQDP 120
Query: 667 KMQVYKDDQVVVIKDKYPKARYHWLVLPWASISSLKAVTREHLELLRHMHTVGEKVIADF 846
KMQVYKD+QVVVIKDKYPKARYHWLVLPW SISSLKAV REHLELL+HMHTVGEKVI DF
Sbjct: 121 KMQVYKDEQVVVIKDKYPKARYHWLVLPWTSISSLKAVAREHLELLKHMHTVGEKVIVDF 180
Query: 847 AGSSKLRFRLGYHAIPSMSHVHLHVISQDFDSPCPKNKKHWN 972
AGSSKLRFRLGYHAIPSMSHVHLHVISQDFDSPC KNKKHWN
Sbjct: 181 AGSSKLRFRLGYHAIPSMSHVHLHVISQDFDSPCLKNKKHWN 222
>ref|NP_009185.2| bifunctional polynucleotide phosphatase/kinase [Homo sapiens].
Length = 521
Score = 71.6 bits (174), Expect = 1e-12
Identities = 42/119 (35%), Positives = 66/119 (55%)
Frame = +1
Query: 199 EAVIVGRGPETKITDKKCSRQQVQLKAECNKGYVKVKQVGVNPTSIDSVIIGKDQEMKLQ 378
+A+++GRGP T++TD+KCSR QV+L A+ V VKQ+GVNP++ + + E L
Sbjct: 29 QALVLGRGPLTQVTDRKCSRTQVELVADPETRTVAVKQLGVNPSTTGTQELKPGLEGSLG 88
Query: 379 PGQVLHMVNELYPYVIEFEEEAKSPGLKTHRKRKRSGNSDSVERDASQEAKPSTGAEPG 555
G L++VN L+P + + EE ++P + S +RDA K + PG
Sbjct: 89 VGDTLYLVNGLHPLTLRW-EETRTPESQPDTPPGTPLVSQDEKRDAELPKKRMRKSNPG 146
>ref|NP_612638.3| histidine triad nucleotide-binding protein 3 [Homo sapiens].
Length = 182
Score = 56.2 bits (134), Expect = 4e-08
Identities = 28/94 (29%), Positives = 57/94 (60%), Gaps = 4/94 (4%)
Frame = +1
Query: 658 EDPKMQVY--KDDQVVVIKDKYPKARYHWLVLPWASISSLKAVTREHLELLRHMHTVGEK 831
+DP ++ +++ ++ KD P A +H+LV+P I + + + ++ +EL+ +M TVG+
Sbjct: 57 QDPGTELLHCENEDLICFKDIKPAATHHYLVVPKKHIGNCRTLRKDQVELVENMVTVGKT 116
Query: 832 VIADFAGSSKLRFRLGYHAIP--SMSHVHLHVIS 927
++ + R+G+H P S+SH+HLHV++
Sbjct: 117 ILERNNFTDFTNVRMGFHMPPFCSISHLHLHVLA 150
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 39,262,118
Number of extensions: 1104657
Number of successful extensions: 3378
Number of sequences better than 1.0e-05: 11
Number of HSP's gapped: 3376
Number of HSP's successfully gapped: 14
Length of query: 324
Length of database: 18,297,164
Length adjustment: 103
Effective length of query: 221
Effective length of database: 14,901,872
Effective search space: 3293313712
Effective search space used: 3293313712
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-004215
(972 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_079821.3| aprataxin isoform a [Mus musculus]. 449 e-126
Alignment gi|NP_001020615.1| aprataxin isoform b [Mus musculus]. 449 e-126
Alignment gi|NP_067524.2| bifunctional polynucleotide phosphatase/kinase ... 73 4e-13
Alignment gi|NP_080074.1| histidine triad nucleotide-binding protein 3 [M... 61 1e-09
Alignment gi|NP_032274.1| histidine triad nucleotide-binding protein 1 [M... 50 3e-06
>ref|NP_079821.3| aprataxin isoform a [Mus musculus].
Length = 342
Score = 449 bits (1155), Expect = e-126
Identities = 224/278 (80%), Positives = 239/278 (85%)
Frame = +1
Query: 139 RVCWLVRQDSRHQRIKLPHLEAVIVGRGPETKITDKKCSRQQVQLKAECNKGYVKVKQVG 318
RVCWLVRQDSRHQRIKLPHLEAV++GR PETKITDKKCSRQQVQLKAECNKGYVKV+Q+G
Sbjct: 9 RVCWLVRQDSRHQRIKLPHLEAVVIGRSPETKITDKKCSRQQVQLKAECNKGYVKVQQMG 68
Query: 319 VNPTSIDSVIIGKDQEMKLQPGQVLHMVNELYPYVIEFEEEAKSPGLKTHRKRKRSGNSD 498
VNPTSIDS +IGKDQE KL PGQVLHMVN LYPY++EFEE A+SP L T RKRKRS + D
Sbjct: 69 VNPTSIDSGVIGKDQEKKLLPGQVLHMVNGLYPYIVEFEEVAESPNL-TQRKRKRS-DCD 126
Query: 499 SVERDASQEAKPSTGAEPGSNPSQCSVPXXXXXXXXXXXXSLSHWSQGLKISMEDPKMQV 678
S E EA+ TG PGS+PSQCSV SL HWSQGLK+SM+DPKMQV
Sbjct: 127 SEE----MEAESGTGLAPGSSPSQCSVSPKKDKNGATKKESLGHWSQGLKMSMKDPKMQV 182
Query: 679 YKDDQVVVIKDKYPKARYHWLVLPWASISSLKAVTREHLELLRHMHTVGEKVIADFAGSS 858
YKDDQVVVIKDKYPKAR+HWLVLPWASISSLK VT EHLELL+HMH VGEKVIADFAGSS
Sbjct: 183 YKDDQVVVIKDKYPKARHHWLVLPWASISSLKVVTSEHLELLKHMHAVGEKVIADFAGSS 242
Query: 859 KLRFRLGYHAIPSMSHVHLHVISQDFDSPCPKNKKHWN 972
KLRFRLGYHAIPSMSHVHLHVISQDFDSPC KNKKHWN
Sbjct: 243 KLRFRLGYHAIPSMSHVHLHVISQDFDSPCLKNKKHWN 280
>ref|NP_001020615.1| aprataxin isoform b [Mus musculus].
Length = 335
Score = 449 bits (1155), Expect = e-126
Identities = 224/278 (80%), Positives = 239/278 (85%)
Frame = +1
Query: 139 RVCWLVRQDSRHQRIKLPHLEAVIVGRGPETKITDKKCSRQQVQLKAECNKGYVKVKQVG 318
RVCWLVRQDSRHQRIKLPHLEAV++GR PETKITDKKCSRQQVQLKAECNKGYVKV+Q+G
Sbjct: 2 RVCWLVRQDSRHQRIKLPHLEAVVIGRSPETKITDKKCSRQQVQLKAECNKGYVKVQQMG 61
Query: 319 VNPTSIDSVIIGKDQEMKLQPGQVLHMVNELYPYVIEFEEEAKSPGLKTHRKRKRSGNSD 498
VNPTSIDS +IGKDQE KL PGQVLHMVN LYPY++EFEE A+SP L T RKRKRS + D
Sbjct: 62 VNPTSIDSGVIGKDQEKKLLPGQVLHMVNGLYPYIVEFEEVAESPNL-TQRKRKRS-DCD 119
Query: 499 SVERDASQEAKPSTGAEPGSNPSQCSVPXXXXXXXXXXXXSLSHWSQGLKISMEDPKMQV 678
S E EA+ TG PGS+PSQCSV SL HWSQGLK+SM+DPKMQV
Sbjct: 120 SEE----MEAESGTGLAPGSSPSQCSVSPKKDKNGATKKESLGHWSQGLKMSMKDPKMQV 175
Query: 679 YKDDQVVVIKDKYPKARYHWLVLPWASISSLKAVTREHLELLRHMHTVGEKVIADFAGSS 858
YKDDQVVVIKDKYPKAR+HWLVLPWASISSLK VT EHLELL+HMH VGEKVIADFAGSS
Sbjct: 176 YKDDQVVVIKDKYPKARHHWLVLPWASISSLKVVTSEHLELLKHMHAVGEKVIADFAGSS 235
Query: 859 KLRFRLGYHAIPSMSHVHLHVISQDFDSPCPKNKKHWN 972
KLRFRLGYHAIPSMSHVHLHVISQDFDSPC KNKKHWN
Sbjct: 236 KLRFRLGYHAIPSMSHVHLHVISQDFDSPCLKNKKHWN 273
>ref|NP_067524.2| bifunctional polynucleotide phosphatase/kinase [Mus musculus].
Length = 522
Score = 72.8 bits (177), Expect = 4e-13
Identities = 36/84 (42%), Positives = 55/84 (65%)
Frame = +1
Query: 199 EAVIVGRGPETKITDKKCSRQQVQLKAECNKGYVKVKQVGVNPTSIDSVIIGKDQEMKLQ 378
+A+++GRGP T++TD+KCSR QV+L A+ V VKQ+GVNP+++ + L
Sbjct: 29 QALVLGRGPLTQVTDRKCSRNQVELIADPESRTVAVKQLGVNPSTVGVQELKPGLSGSLS 88
Query: 379 PGQVLHMVNELYPYVIEFEEEAKS 450
G VL++VN LYP + +EE + S
Sbjct: 89 LGDVLYLVNGLYPLTLRWEELSTS 112
>ref|NP_080074.1| histidine triad nucleotide-binding protein 3 [Mus musculus].
Length = 165
Score = 60.8 bits (146), Expect = 1e-09
Identities = 31/94 (32%), Positives = 57/94 (60%), Gaps = 4/94 (4%)
Frame = +1
Query: 658 EDPKMQVY--KDDQVVVIKDKYPKARYHWLVLPWASISSLKAVTREHLELLRHMHTVGEK 831
++PK +++ +++ +V KD P A YH+LV+P I S K + ++H+E++ M G+
Sbjct: 40 QEPKTELFHCENEDLVCFKDIKPAALYHYLVVPKKHIGSCKDLNKDHIEMVESMVAAGKT 99
Query: 832 VIADFAGSSKLRFRLGYHAIP--SMSHVHLHVIS 927
++ + R+G+H P S+SH+HLHVI+
Sbjct: 100 MLERNNFTDFTDVRMGFHVPPFCSISHLHLHVIA 133
>ref|NP_032274.1| histidine triad nucleotide-binding protein 1 [Mus musculus].
Length = 126
Score = 50.1 bits (118), Expect = 3e-06
Identities = 31/97 (31%), Positives = 47/97 (48%), Gaps = 2/97 (2%)
Frame = +1
Query: 640 GLKISMEDPKMQVYKDDQVVVIKDKYPKARYHWLVLPWASISSLKAVTREHLELLRHMHT 819
G I E P +++DD+ + D P+A H+LV+P IS + + LL H+
Sbjct: 20 GKIIRKEIPAKIIFEDDRCLAFHDISPQAPTHFLVIPKKHISQISVADDDDESLLGHLMI 79
Query: 820 VGEKVIADFAGSSKLRFRL--GYHAIPSMSHVHLHVI 924
VG+K AD R + G S+ H+HLHV+
Sbjct: 80 VGKKCAADLGLKRGYRMVVNEGADGGQSVYHIHLHVL 116
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 33,405,585
Number of extensions: 930632
Number of successful extensions: 2769
Number of sequences better than 1.0e-05: 5
Number of HSP's gapped: 2762
Number of HSP's successfully gapped: 5
Length of query: 324
Length of database: 15,617,559
Length adjustment: 102
Effective length of query: 222
Effective length of database: 12,553,887
Effective search space: 2786962914
Effective search space used: 2786962914
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-004215
(972 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_998899.1| aprataxin [Sus scrofa]. 552 e-157
Alignment gi|XP_003127398.2| PREDICTED: bifunctional polynucleotide phosp... 71 8e-13
Alignment gi|XP_003123955.1| PREDICTED: histidine triad nucleotide-bindin... 55 4e-08
Alignment gi|XP_001928763.1| PREDICTED: histidine triad nucleotide-bindin... 50 2e-06
>ref|NP_998899.1| aprataxin [Sus scrofa].
Length = 356
Score = 552 bits (1422), Expect = e-157
Identities = 280/317 (88%), Positives = 280/317 (88%)
Frame = +1
Query: 22 SNVSLSPSAVSR*GSCWPTSSATLLAGLKAVDVGLRIMTRVCWLVRQDSRHQRIKLPHLE 201
SNVSLSPSAVSR IMTRVCWLVRQDSRHQRIKLPHLE
Sbjct: 2 SNVSLSPSAVSR------------------------IMTRVCWLVRQDSRHQRIKLPHLE 37
Query: 202 AVIVGRGPETKITDKKCSRQQVQLKAECNKGYVKVKQVGVNPTSIDSVIIGKDQEMKLQP 381
AVIVGRGPETKITDKKCSRQQVQLKAECNKGYVKVKQVGVNPTSIDSVIIGKDQEMKLQP
Sbjct: 38 AVIVGRGPETKITDKKCSRQQVQLKAECNKGYVKVKQVGVNPTSIDSVIIGKDQEMKLQP 97
Query: 382 GQVLHMVNELYPYVIEFEEEAKSPGLKTHRKRKRSGNSDSVERDASQEAKPSTGAEPGSN 561
GQVLHMVNELYPYVIEFEEEAKSPGLKTHRKRKRSGNSDSVERDASQEAKPSTGAEPGSN
Sbjct: 98 GQVLHMVNELYPYVIEFEEEAKSPGLKTHRKRKRSGNSDSVERDASQEAKPSTGAEPGSN 157
Query: 562 PSQCSVPXXXXXXXXXXXXSLSHWSQGLKISMEDPKMQVYKDDQVVVIKDKYPKARYHWL 741
PSQCSVP SLSHWSQGLKISMEDPKMQVYKDDQVVVIKDKYPKARYHWL
Sbjct: 158 PSQCSVPPKKEKDAATKKESLSHWSQGLKISMEDPKMQVYKDDQVVVIKDKYPKARYHWL 217
Query: 742 VLPWASISSLKAVTREHLELLRHMHTVGEKVIADFAGSSKLRFRLGYHAIPSMSHVHLHV 921
VLPWASISSLKAVTREHLELLRHMHTVGEKVIADFAGSSKLRFRLGYHAIPSMSHVHLHV
Sbjct: 218 VLPWASISSLKAVTREHLELLRHMHTVGEKVIADFAGSSKLRFRLGYHAIPSMSHVHLHV 277
Query: 922 ISQDFDSPCPKNKKHWN 972
ISQDFDSPC KNKKHWN
Sbjct: 278 ISQDFDSPCLKNKKHWN 294
>ref|XP_003127398.2| PREDICTED: bifunctional polynucleotide phosphatase/kinase [Sus
scrofa].
Length = 522
Score = 71.2 bits (173), Expect = 8e-13
Identities = 43/122 (35%), Positives = 68/122 (55%)
Frame = +1
Query: 199 EAVIVGRGPETKITDKKCSRQQVQLKAECNKGYVKVKQVGVNPTSIDSVIIGKDQEMKLQ 378
+A+++GRGP T +TD+KCSR QV+L A+ V VKQ+GVNP++ + + E L
Sbjct: 29 QALVLGRGPLTLVTDRKCSRNQVELVADPETRTVAVKQLGVNPSTAGAQELRPGLEGSLG 88
Query: 379 PGQVLHMVNELYPYVIEFEEEAKSPGLKTHRKRKRSGNSDSVERDASQEAKPSTGAEPGS 558
G L++VN L+P + + EEA++P L+ G + +EA+P S
Sbjct: 89 VGDTLYLVNGLHPLTLRW-EEARTPELQPDTP---PGTPPVPPHEEEEEAEPPKKQMRKS 144
Query: 559 NP 564
+P
Sbjct: 145 SP 146
>ref|XP_003123955.1| PREDICTED: histidine triad nucleotide-binding protein 1-like [Sus
scrofa].
Length = 126
Score = 55.5 bits (132), Expect = 4e-08
Identities = 35/97 (36%), Positives = 48/97 (49%), Gaps = 2/97 (2%)
Frame = +1
Query: 640 GLKISMEDPKMQVYKDDQVVVIKDKYPKARYHWLVLPWASISSLKAVTREHLELLRHMHT 819
G I E P +Y+DDQ + D P+A H+LV+P IS + A + LL H+
Sbjct: 20 GKIIRKEIPAKIIYEDDQCLAFHDISPQAPTHFLVIPKKHISQISAAEDDDESLLGHLMI 79
Query: 820 VGEKVIADFAGSSKLRFRL--GYHAIPSMSHVHLHVI 924
VG+K AD R + G S+ HVHLHV+
Sbjct: 80 VGKKCAADLGLKKGYRMVVNEGSDGGQSVYHVHLHVL 116
>ref|XP_001928763.1| PREDICTED: histidine triad nucleotide-binding protein 3 [Sus
scrofa].
Length = 182
Score = 50.1 bits (118), Expect = 2e-06
Identities = 26/84 (30%), Positives = 49/84 (58%), Gaps = 2/84 (2%)
Frame = +1
Query: 682 KDDQVVVIKDKYPKARYHWLVLPWASISSLKAVTREHLELLRHMHTVGEKVIADFAGSSK 861
+++ +V KD P A +H+LV P I + + ++ + L+ +M TVG+ ++ +
Sbjct: 67 ENEDLVCFKDIKPAAPHHYLVAPKKHIVNCNYLKKDQIGLVENMVTVGKTILERNNFTDF 126
Query: 862 LRFRLGYHAIP--SMSHVHLHVIS 927
R+G+H P S+SH+HLHV++
Sbjct: 127 NNIRMGFHIPPFCSISHLHLHVLA 150
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 24,641,787
Number of extensions: 693918
Number of successful extensions: 2030
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 2026
Number of HSP's successfully gapped: 4
Length of query: 324
Length of database: 11,343,932
Length adjustment: 99
Effective length of query: 225
Effective length of database: 8,879,129
Effective search space: 1997804025
Effective search space used: 1997804025
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-004215
(972 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr10 611 e-172
Sscrofa_Chr02 135 5e-29
>Sscrofa_Chr10
|| Length = 79102373
Score = 611 bits (308), Expect = e-172
Identities = 308/308 (100%)
Strand = Plus / Plus
Query: 309 gcaggtaggggtcaatcccaccagcattgactcagtcataattggtaaggaccaagagat 368
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 37823574 gcaggtaggggtcaatcccaccagcattgactcagtcataattggtaaggaccaagagat 37823633
Query: 369 gaagctgcagcctggccaggttctccacatggtgaatgaactttatccatatgttataga 428
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 37823634 gaagctgcagcctggccaggttctccacatggtgaatgaactttatccatatgttataga 37823693
Query: 429 gtttgaggaagaggcaaagagccctggcctgaaaacacacaggaagagaaagaggtcagg 488
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 37823694 gtttgaggaagaggcaaagagccctggcctgaaaacacacaggaagagaaagaggtcagg 37823753
Query: 489 caacagtgattctgtagaaagggatgcttctcaggaagctaagcccagtacaggagcaga 548
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 37823754 caacagtgattctgtagaaagggatgcttctcaggaagctaagcccagtacaggagcaga 37823813
Query: 549 acctgggagcaaccctagccagtgctctgtgcccgcaaagaaggaaaaggatgcagccac 608
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 37823814 acctgggagcaaccctagccagtgctctgtgcccgcaaagaaggaaaaggatgcagccac 37823873
Query: 609 caaaaagg 616
||||||||
Sbjct: 37823874 caaaaagg 37823881
Score = 454 bits (229), Expect = e-125
Identities = 229/229 (100%)
Strand = Plus / Plus
Query: 674 aggtttacaaagatgaccaggtggtggtgattaaggataaataccccaaggctcgttacc 733
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 37826114 aggtttacaaagatgaccaggtggtggtgattaaggataaataccccaaggctcgttacc 37826173
Query: 734 actggctggtcttaccatgggcctccatttccagtctgaaggctgttaccagagaacacc 793
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 37826174 actggctggtcttaccatgggcctccatttccagtctgaaggctgttaccagagaacacc 37826233
Query: 794 ttgagctcctcagacacatgcacactgtgggggaaaaggtgattgcagactttgctggct 853
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 37826234 ttgagctcctcagacacatgcacactgtgggggaaaaggtgattgcagactttgctggct 37826293
Query: 854 ccagcaaactccgcttccgattgggctaccacgccattcctagcatgag 902
|||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 37826294 ccagcaaactccgcttccgattgggctaccacgccattcctagcatgag 37826342
Score = 281 bits (142), Expect = 3e-73
Identities = 142/142 (100%)
Strand = Plus / Plus
Query: 124 ctcagaataatgacgcgggtatgctggttggtgagacaggacagccggcaccagcgtatc 183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 37732929 ctcagaataatgacgcgggtatgctggttggtgagacaggacagccggcaccagcgtatc 37732988
Query: 184 aagcttccacatttggaagcagtcattgttgggcgaggcccagagaccaagatcactgac 243
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 37732989 aagcttccacatttggaagcagtcattgttgggcgaggcccagagaccaagatcactgac 37733048
Query: 244 aagaagtgctctcgacagcaag 265
||||||||||||||||||||||
Sbjct: 37733049 aagaagtgctctcgacagcaag 37733070
Score = 238 bits (120), Expect = 5e-60
Identities = 126/128 (98%)
Strand = Plus / Plus
Query: 1 ggaagttgtgcgtcatggaggagtaacgtgagcttatccccctctgctgtctcgaggtaa 60
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 37724496 ggaagttgtgcgtcatggaggagtaacgtgagcttatccgcctctgctgtctcgaggtaa 37724555
Query: 61 ggcagttgttggcctacctcctccgctaccctgctggccggattgaaagccgtggatgtg 120
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 37724556 ggcagttgttggcctacctcctccgctgccctgctggccggattgaaagccgtggatgtg 37724615
Query: 121 ggcctcag 128
||||||||
Sbjct: 37724616 ggcctcag 37724623
Score = 135 bits (68), Expect = 5e-29
Identities = 71/72 (98%)
Strand = Plus / Plus
Query: 901 agtcacgtacaccttcatgtgatcagccaggactttgattctccttgccctaaaaacaaa 960
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 37835751 agtcacgtacaccttcatgtgatcagccaggactttgattctccttgccttaaaaacaaa 37835810
Query: 961 aagcattggaat 972
||||||||||||
Sbjct: 37835811 aagcattggaat 37835822
Score = 127 bits (64), Expect = 1e-26
Identities = 64/64 (100%)
Strand = Plus / Plus
Query: 614 aggaatcattgagccactggagtcaaggcttgaagatttccatggaggaccccaaaatgc 673
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 37824459 aggaatcattgagccactggagtcaaggcttgaagatttccatggaggaccccaaaatgc 37824518
Query: 674 aggt 677
||||
Sbjct: 37824519 aggt 37824522
Score = 103 bits (52), Expect = 2e-19
Identities = 52/52 (100%)
Strand = Plus / Plus
Query: 264 agtgcaattgaaagcagaatgtaacaaaggatatgtcaaggtaaagcaggta 315
||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 37823331 agtgcaattgaaagcagaatgtaacaaaggatatgtcaaggtaaagcaggta 37823382
>Sscrofa_Chr02
|| Length = 162569375
Score = 135 bits (68), Expect = 5e-29
Identities = 71/72 (98%)
Strand = Plus / Minus
Query: 901 agtcacgtacaccttcatgtgatcagccaggactttgattctccttgccctaaaaacaaa 960
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 11315319 agtcacgtacaccttcatgtgatcagccaggactttgattctccttgccttaaaaacaaa 11315260
Query: 961 aagcattggaat 972
||||||||||||
Sbjct: 11315259 aagcattggaat 11315248
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 30,524,997
Number of extensions: 219
Number of successful extensions: 219
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 219
Number of HSP's successfully gapped: 8
Length of query: 972
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 951
Effective length of database: 2,808,413,156
Effective search space: 2670800911356
Effective search space used: 2670800911356
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 29 (58.0 bits)