Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-004226
(975 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001076838.1| transmembrane protein 130 [Bos taurus]. 385 e-107
Alignment gi|NP_001033154.1| transmembrane glycoprotein NMB [Bos taurus]. 54 3e-07
Alignment gi|NP_001073684.2| melanocyte protein PMEL precursor [Bos tauru... 50 3e-06
>ref|NP_001076838.1| transmembrane protein 130 [Bos taurus].
Length = 423
Score = 385 bits (988), Expect = e-107
Identities = 185/215 (86%), Positives = 198/215 (92%)
Frame = +1
Query: 331 YELQLTTDGPATTGAEVTITASLVADDNGSLVLPTSTHFYRFHWIHTPLMLMGKTDEPFS 510
YELQLTTDGPATTGAEVTI ASLVADDNGSL LPTSTH YRFHWIHTPL+L GK DE FS
Sbjct: 31 YELQLTTDGPATTGAEVTIMASLVADDNGSLALPTSTHLYRFHWIHTPLLLTGKADEAFS 90
Query: 511 STIRVVGNVAGDFPVSVWVTAANCRMCRPMARSFLVLPITEFLVGSLVVTQNTSLPWPSS 690
STIRVVG+V GDFP+SVWVTAA+C MC+P+ARS LVLPITEFLVG+LVVTQNTSLPWPSS
Sbjct: 91 STIRVVGSVPGDFPISVWVTAADCGMCQPVARSLLVLPITEFLVGNLVVTQNTSLPWPSS 150
Query: 691 YLTKTVLRVAFLLHDPSNFFKTASFLYRWDFGDGTQLVTNDATVYYNYSIIGTFTIKVKV 870
YLTKTVL+V+FLLHDPSNFFK ASFLY WDFGDGTQ+VT D TVYYNYSIIG+FT+KVKV
Sbjct: 151 YLTKTVLKVSFLLHDPSNFFKNASFLYSWDFGDGTQMVTRDGTVYYNYSIIGSFTVKVKV 210
Query: 871 VAQWEQAMPDAGKGTMQKTGDFSASLKLQETLRGI 975
VA WEQ PDAGKG +QKTGDFSASLKLQETLRGI
Sbjct: 211 VAGWEQVTPDAGKGILQKTGDFSASLKLQETLRGI 245
>ref|NP_001033154.1| transmembrane glycoprotein NMB [Bos taurus].
Length = 555
Score = 53.5 bits (127), Expect = 3e-07
Identities = 39/146 (26%), Positives = 71/146 (48%), Gaps = 2/146 (1%)
Frame = +1
Query: 448 YRFHWIHTPLMLMGKTDEPFSSTIRVVGNVAGDFPVSVWVTAANCRMCRPMARSFLVLPI 627
Y FH + +G+ S I G + V V + R P+A+ V +
Sbjct: 172 YVFHTLGQYFQKLGQCSVTIS--INTANVSLGPQIMEVTVYRRHRRAYVPIAKVKDVYVV 229
Query: 628 TEFLVGSLVVTQ-NTSLPWPSSYLTKTVLRVAFLLHDPSNFFKTASFLYRWDFGDGTQL- 801
T+ + + ++Q N ++L + + L+HDPS+F ++ Y+W+FGD T L
Sbjct: 230 TDQIPVFVTMSQKNNRNSSDETFLRDLPITFSVLIHDPSHFLNESAIYYKWNFGDNTGLF 289
Query: 802 VTNDATVYYNYSIIGTFTIKVKVVAQ 879
V+N+ T+ + Y + GTF++ + V A+
Sbjct: 290 VSNNHTLNHTYVLNGTFSLNLTVQAE 315
>ref|NP_001073684.2| melanocyte protein PMEL precursor [Bos taurus].
Length = 649
Score = 50.1 bits (118), Expect = 3e-06
Identities = 34/96 (35%), Positives = 48/96 (50%), Gaps = 2/96 (2%)
Frame = +1
Query: 595 PMARSFLVLPITEFLVGSLVVTQNTSLPWPSS-YLTKTVLRVAFLLHDPSNFFKTASFLY 771
P+A S IT+ + S+ V+Q +L + +L K L A LHDPS + A Y
Sbjct: 199 PLAHSSSAFTITDQVPFSVSVSQLQALDGRNKRFLRKQPLTFALQLHDPSGYLAGADLSY 258
Query: 772 RWDFGDGT-QLVTNDATVYYNYSIIGTFTIKVKVVA 876
WDFGD T L++ TV + Y G T +V + A
Sbjct: 259 TWDFGDSTGTLISRALTVTHTYLESGPVTAQVVLQA 294
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 28,955,140
Number of extensions: 797034
Number of successful extensions: 4139
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 4106
Number of HSP's successfully gapped: 3
Length of query: 325
Length of database: 17,681,374
Length adjustment: 102
Effective length of query: 223
Effective length of database: 14,306,398
Effective search space: 3190326754
Effective search space used: 3190326754
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-004226
(975 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_851082.1| PREDICTED: hypothetical protein XP_845989 [Cani... 378 e-105
Alignment gi|XP_539472.2| PREDICTED: similar to glycoprotein (transmembra... 50 4e-06
Alignment gi|XP_863198.1| PREDICTED: similar to glycoprotein (transmembra... 49 6e-06
>ref|XP_851082.1| PREDICTED: hypothetical protein XP_845989 [Canis familiaris].
Length = 423
Score = 378 bits (971), Expect = e-105
Identities = 181/215 (84%), Positives = 199/215 (92%)
Frame = +1
Query: 331 YELQLTTDGPATTGAEVTITASLVADDNGSLVLPTSTHFYRFHWIHTPLMLMGKTDEPFS 510
YEL LTTDGPATTGAEVTITASLVA+DNGSLVLPT++ YRFHWIHTPL+LMGKTDEPFS
Sbjct: 31 YELHLTTDGPATTGAEVTITASLVANDNGSLVLPTNSRLYRFHWIHTPLLLMGKTDEPFS 90
Query: 511 STIRVVGNVAGDFPVSVWVTAANCRMCRPMARSFLVLPITEFLVGSLVVTQNTSLPWPSS 690
S IR VGN+ GDFP+SVWVTAA+C C+P+ARS LVLPITE LVG+LVVTQNTSLPWPSS
Sbjct: 91 SAIRAVGNMPGDFPISVWVTAADCWTCQPVARSLLVLPITELLVGNLVVTQNTSLPWPSS 150
Query: 691 YLTKTVLRVAFLLHDPSNFFKTASFLYRWDFGDGTQLVTNDATVYYNYSIIGTFTIKVKV 870
YLTKTVL+V+FLLHDPSNFFKTASFLY WDFGDGTQ+VT DA VYYNYSIIGTFT+K+KV
Sbjct: 151 YLTKTVLKVSFLLHDPSNFFKTASFLYNWDFGDGTQMVTEDAMVYYNYSIIGTFTVKLKV 210
Query: 871 VAQWEQAMPDAGKGTMQKTGDFSASLKLQETLRGI 975
VA+WEQA +AGKG +QKTGDFSASLKLQETLRGI
Sbjct: 211 VAEWEQATQNAGKGIVQKTGDFSASLKLQETLRGI 245
>ref|XP_539472.2| PREDICTED: similar to glycoprotein (transmembrane) nmb isoform b
precursor isoform 2 [Canis familiaris].
Length = 554
Score = 49.7 bits (117), Expect = 4e-06
Identities = 29/84 (34%), Positives = 46/84 (54%), Gaps = 4/84 (4%)
Frame = +1
Query: 724 LLHDPSNFFKTASFLYRWDFGDGTQL-VTNDATVYYNYSIIGTFTIKVKVVAQWEQAMPD 900
L+HDPS+F ++ Y+W+FGD T L V+N T+ + Y + GTF++ + V A P
Sbjct: 263 LIHDPSHFLNESAIYYKWNFGDNTGLFVSNAPTLNHTYVLNGTFSLNLTVQASVPGPCPS 322
Query: 901 AGKGTMQKTGDFSAS---LKLQET 963
+ T SA L+L++T
Sbjct: 323 PSPTPPKPTSLSSAGDNPLELRKT 346
>ref|XP_863198.1| PREDICTED: similar to glycoprotein (transmembrane) nmb isoform a
precursor isoform 3 [Canis familiaris].
Length = 581
Score = 49.3 bits (116), Expect = 6e-06
Identities = 22/52 (42%), Positives = 35/52 (67%), Gaps = 1/52 (1%)
Frame = +1
Query: 724 LLHDPSNFFKTASFLYRWDFGDGTQL-VTNDATVYYNYSIIGTFTIKVKVVA 876
L+HDPS+F ++ Y+W+FGD T L V+N T+ + Y + GTF++ + V A
Sbjct: 263 LIHDPSHFLNESAIYYKWNFGDNTGLFVSNAPTLNHTYVLNGTFSLNLTVQA 314
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 30,336,472
Number of extensions: 828374
Number of successful extensions: 4545
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 4515
Number of HSP's successfully gapped: 3
Length of query: 325
Length of database: 18,874,504
Length adjustment: 103
Effective length of query: 222
Effective length of database: 15,440,896
Effective search space: 3427878912
Effective search space used: 3427878912
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-004226
(975 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001127922.1| transmembrane protein 130 isoform a [Homo sa... 350 9e-97
Alignment gi|NP_690877.1| transmembrane protein 130 isoform b [Homo sapie... 350 9e-97
Alignment gi|NP_001127923.1| transmembrane protein 130 isoform c [Homo sa... 199 4e-51
>ref|NP_001127922.1| transmembrane protein 130 isoform a [Homo sapiens].
Length = 435
Score = 350 bits (899), Expect = 9e-97
Identities = 168/215 (78%), Positives = 187/215 (86%)
Frame = +1
Query: 331 YELQLTTDGPATTGAEVTITASLVADDNGSLVLPTSTHFYRFHWIHTPLMLMGKTDEPFS 510
YEL LTTD PATTGA VTI+ASLVA DNGSL LP H YRFHWIHTPL+L GK ++ S
Sbjct: 31 YELNLTTDSPATTGAVVTISASLVAKDNGSLALPADAHLYRFHWIHTPLVLTGKMEKGLS 90
Query: 511 STIRVVGNVAGDFPVSVWVTAANCRMCRPMARSFLVLPITEFLVGSLVVTQNTSLPWPSS 690
STIRVVG+V G+FPVSVWVTAA+C MC+P+AR F+VLPITEFLVG LVVTQNTSLPWPSS
Sbjct: 91 STIRVVGHVPGEFPVSVWVTAADCWMCQPVARGFVVLPITEFLVGDLVVTQNTSLPWPSS 150
Query: 691 YLTKTVLRVAFLLHDPSNFFKTASFLYRWDFGDGTQLVTNDATVYYNYSIIGTFTIKVKV 870
YLTKTVL+V+FLLHDPSNF KTA FLY WDFGDGTQ+VT D+ VYYNYSIIGTFT+K+KV
Sbjct: 151 YLTKTVLKVSFLLHDPSNFLKTALFLYSWDFGDGTQMVTEDSVVYYNYSIIGTFTVKLKV 210
Query: 871 VAQWEQAMPDAGKGTMQKTGDFSASLKLQETLRGI 975
VA+WE+ PDA + QKTGDFSASLKLQETLRGI
Sbjct: 211 VAEWEEVEPDATRAVKQKTGDFSASLKLQETLRGI 245
>ref|NP_690877.1| transmembrane protein 130 isoform b [Homo sapiens].
Length = 423
Score = 350 bits (899), Expect = 9e-97
Identities = 168/215 (78%), Positives = 187/215 (86%)
Frame = +1
Query: 331 YELQLTTDGPATTGAEVTITASLVADDNGSLVLPTSTHFYRFHWIHTPLMLMGKTDEPFS 510
YEL LTTD PATTGA VTI+ASLVA DNGSL LP H YRFHWIHTPL+L GK ++ S
Sbjct: 31 YELNLTTDSPATTGAVVTISASLVAKDNGSLALPADAHLYRFHWIHTPLVLTGKMEKGLS 90
Query: 511 STIRVVGNVAGDFPVSVWVTAANCRMCRPMARSFLVLPITEFLVGSLVVTQNTSLPWPSS 690
STIRVVG+V G+FPVSVWVTAA+C MC+P+AR F+VLPITEFLVG LVVTQNTSLPWPSS
Sbjct: 91 STIRVVGHVPGEFPVSVWVTAADCWMCQPVARGFVVLPITEFLVGDLVVTQNTSLPWPSS 150
Query: 691 YLTKTVLRVAFLLHDPSNFFKTASFLYRWDFGDGTQLVTNDATVYYNYSIIGTFTIKVKV 870
YLTKTVL+V+FLLHDPSNF KTA FLY WDFGDGTQ+VT D+ VYYNYSIIGTFT+K+KV
Sbjct: 151 YLTKTVLKVSFLLHDPSNFLKTALFLYSWDFGDGTQMVTEDSVVYYNYSIIGTFTVKLKV 210
Query: 871 VAQWEQAMPDAGKGTMQKTGDFSASLKLQETLRGI 975
VA+WE+ PDA + QKTGDFSASLKLQETLRGI
Sbjct: 211 VAEWEEVEPDATRAVKQKTGDFSASLKLQETLRGI 245
>ref|NP_001127923.1| transmembrane protein 130 isoform c [Homo sapiens].
Length = 321
Score = 199 bits (505), Expect = 4e-51
Identities = 94/115 (81%), Positives = 103/115 (89%)
Frame = +1
Query: 631 EFLVGSLVVTQNTSLPWPSSYLTKTVLRVAFLLHDPSNFFKTASFLYRWDFGDGTQLVTN 810
EFLVG LVVTQNTSLPWPSSYLTKTVL+V+FLLHDPSNF KTA FLY WDFGDGTQ+VT
Sbjct: 29 EFLVGDLVVTQNTSLPWPSSYLTKTVLKVSFLLHDPSNFLKTALFLYSWDFGDGTQMVTE 88
Query: 811 DATVYYNYSIIGTFTIKVKVVAQWEQAMPDAGKGTMQKTGDFSASLKLQETLRGI 975
D+ VYYNYSIIGTFT+K+KVVA+WE+ PDA + QKTGDFSASLKLQETLRGI
Sbjct: 89 DSVVYYNYSIIGTFTVKLKVVAEWEEVEPDATRAVKQKTGDFSASLKLQETLRGI 143
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 29,620,223
Number of extensions: 800421
Number of successful extensions: 3990
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 3931
Number of HSP's successfully gapped: 3
Length of query: 325
Length of database: 18,297,164
Length adjustment: 103
Effective length of query: 222
Effective length of database: 14,901,872
Effective search space: 3308215584
Effective search space used: 3308215584
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-004226
(975 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_808403.2| transmembrane protein 130 precursor [Mus muscul... 312 3e-85
Alignment gi|NP_444340.3| transmembrane glycoprotein NMB precursor [Mus m... 50 3e-06
>ref|NP_808403.2| transmembrane protein 130 precursor [Mus musculus].
Length = 419
Score = 312 bits (799), Expect = 3e-85
Identities = 147/215 (68%), Positives = 175/215 (81%)
Frame = +1
Query: 331 YELQLTTDGPATTGAEVTITASLVADDNGSLVLPTSTHFYRFHWIHTPLMLMGKTDEPFS 510
Y L LT DGPAT G EVTI+ASL DNGSL LP TH YRFHWIHTPL L K ++ +
Sbjct: 28 YNLSLTADGPATVGTEVTISASLEVKDNGSLPLPADTHLYRFHWIHTPLTLTAKNEKNLT 87
Query: 511 STIRVVGNVAGDFPVSVWVTAANCRMCRPMARSFLVLPITEFLVGSLVVTQNTSLPWPSS 690
STI VVG V GDFP+SVWVTA +C +C+P+ARS L+LPI E LVG++VVTQNTSL WP+S
Sbjct: 88 STIHVVGGVPGDFPISVWVTAVDCWVCQPLARSTLLLPIKESLVGNIVVTQNTSLSWPNS 147
Query: 691 YLTKTVLRVAFLLHDPSNFFKTASFLYRWDFGDGTQLVTNDATVYYNYSIIGTFTIKVKV 870
Y+TK LR++FLLHDPS+FFK+ASF YRWDFGDGT L+T++ VYYNYS GTFT+KV+V
Sbjct: 148 YITKRSLRLSFLLHDPSDFFKSASFFYRWDFGDGTLLITDNPVVYYNYSSPGTFTVKVRV 207
Query: 871 VAQWEQAMPDAGKGTMQKTGDFSASLKLQETLRGI 975
VA+WEQ PD KGT+QKTGDFSASL L+E+L+GI
Sbjct: 208 VAEWEQIKPDTTKGTIQKTGDFSASLDLRESLQGI 242
>ref|NP_444340.3| transmembrane glycoprotein NMB precursor [Mus musculus].
Length = 574
Score = 50.1 bits (118), Expect = 3e-06
Identities = 40/144 (27%), Positives = 67/144 (46%), Gaps = 3/144 (2%)
Frame = +1
Query: 448 YRFHWIHTPLMLMGKTDEPFSSTIRVVGNVAGDFPVSVWVTAANCRMCRPMARSFLVLPI 627
Y FH + +G+ S I V AG + V V R P+++ V I
Sbjct: 175 YVFHTLGQYFQKLGRCSARVS--INTVNLTAGPQVMEVTVFRRYGRAYIPISKVKDVYVI 232
Query: 628 TEFLVGSLVVTQNTSLPWPSSYLTKTVLRVAF--LLHDPSNFFKTASFLYRWDFGDGTQL 801
T+ + + ++Q + L + F L+HDPS+F ++ Y+W+FGD T L
Sbjct: 233 TDQIPVFVTMSQKNDRNLSDEIFLRD-LPIVFDVLIHDPSHFLNDSAISYKWNFGDNTGL 291
Query: 802 -VTNDATVYYNYSIIGTFTIKVKV 870
V+N+ T+ + Y + GTF + + V
Sbjct: 292 FVSNNHTLNHTYVLNGTFNLNLTV 315
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 24,904,581
Number of extensions: 659297
Number of successful extensions: 2930
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 2903
Number of HSP's successfully gapped: 2
Length of query: 325
Length of database: 15,617,559
Length adjustment: 102
Effective length of query: 223
Effective length of database: 12,553,887
Effective search space: 2799516801
Effective search space used: 2799516801
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-004226
(975 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_003354502.1| PREDICTED: transmembrane protein 130 isoform... 440 e-124
Alignment gi|XP_003124347.1| PREDICTED: transmembrane protein 130 isoform... 440 e-124
Alignment gi|XP_003354503.1| PREDICTED: transmembrane protein 130 isoform... 234 4e-62
Alignment gi|NP_001092054.1| transmembrane glycoprotein NMB [Sus scrofa]. 49 6e-06
>ref|XP_003354502.1| PREDICTED: transmembrane protein 130 isoform 2 [Sus scrofa].
Length = 423
Score = 440 bits (1132), Expect = e-124
Identities = 220/238 (92%), Positives = 220/238 (92%)
Frame = +1
Query: 262 RLDRIXXXXXXXXXXXXXXXXXXYELQLTTDGPATTGAEVTITASLVADDNGSLVLPTST 441
RLDRI YELQLTTDGPATTGAEVTITASLVADDNGSLVLPTST
Sbjct: 8 RLDRILWLACLLPLAPARVAAGLYELQLTTDGPATTGAEVTITASLVADDNGSLVLPTST 67
Query: 442 HFYRFHWIHTPLMLMGKTDEPFSSTIRVVGNVAGDFPVSVWVTAANCRMCRPMARSFLVL 621
HFYRFHWIHTPLMLMGKTDEPFSSTIRVVGNVAGDFPVSVWVTAANCRMCRPMARSFLVL
Sbjct: 68 HFYRFHWIHTPLMLMGKTDEPFSSTIRVVGNVAGDFPVSVWVTAANCRMCRPMARSFLVL 127
Query: 622 PITEFLVGSLVVTQNTSLPWPSSYLTKTVLRVAFLLHDPSNFFKTASFLYRWDFGDGTQL 801
PITEFLVGSLVVTQNTSLPWPSSYLTKTVLRVAFLLHDPSNFFKTASFLYRWDFGDGTQL
Sbjct: 128 PITEFLVGSLVVTQNTSLPWPSSYLTKTVLRVAFLLHDPSNFFKTASFLYRWDFGDGTQL 187
Query: 802 VTNDATVYYNYSIIGTFTIKVKVVAQWEQAMPDAGKGTMQKTGDFSASLKLQETLRGI 975
VTNDATVYYNYSIIGTFTIKVKVVAQWEQAMPDAGKGTMQKTGDFSASLKLQETLRGI
Sbjct: 188 VTNDATVYYNYSIIGTFTIKVKVVAQWEQAMPDAGKGTMQKTGDFSASLKLQETLRGI 245
>ref|XP_003124347.1| PREDICTED: transmembrane protein 130 isoform 1 [Sus scrofa].
Length = 435
Score = 440 bits (1132), Expect = e-124
Identities = 220/238 (92%), Positives = 220/238 (92%)
Frame = +1
Query: 262 RLDRIXXXXXXXXXXXXXXXXXXYELQLTTDGPATTGAEVTITASLVADDNGSLVLPTST 441
RLDRI YELQLTTDGPATTGAEVTITASLVADDNGSLVLPTST
Sbjct: 8 RLDRILWLACLLPLAPARVAAGLYELQLTTDGPATTGAEVTITASLVADDNGSLVLPTST 67
Query: 442 HFYRFHWIHTPLMLMGKTDEPFSSTIRVVGNVAGDFPVSVWVTAANCRMCRPMARSFLVL 621
HFYRFHWIHTPLMLMGKTDEPFSSTIRVVGNVAGDFPVSVWVTAANCRMCRPMARSFLVL
Sbjct: 68 HFYRFHWIHTPLMLMGKTDEPFSSTIRVVGNVAGDFPVSVWVTAANCRMCRPMARSFLVL 127
Query: 622 PITEFLVGSLVVTQNTSLPWPSSYLTKTVLRVAFLLHDPSNFFKTASFLYRWDFGDGTQL 801
PITEFLVGSLVVTQNTSLPWPSSYLTKTVLRVAFLLHDPSNFFKTASFLYRWDFGDGTQL
Sbjct: 128 PITEFLVGSLVVTQNTSLPWPSSYLTKTVLRVAFLLHDPSNFFKTASFLYRWDFGDGTQL 187
Query: 802 VTNDATVYYNYSIIGTFTIKVKVVAQWEQAMPDAGKGTMQKTGDFSASLKLQETLRGI 975
VTNDATVYYNYSIIGTFTIKVKVVAQWEQAMPDAGKGTMQKTGDFSASLKLQETLRGI
Sbjct: 188 VTNDATVYYNYSIIGTFTIKVKVVAQWEQAMPDAGKGTMQKTGDFSASLKLQETLRGI 245
>ref|XP_003354503.1| PREDICTED: transmembrane protein 130 isoform 3 [Sus scrofa].
Length = 321
Score = 234 bits (598), Expect = 4e-62
Identities = 115/115 (100%), Positives = 115/115 (100%)
Frame = +1
Query: 631 EFLVGSLVVTQNTSLPWPSSYLTKTVLRVAFLLHDPSNFFKTASFLYRWDFGDGTQLVTN 810
EFLVGSLVVTQNTSLPWPSSYLTKTVLRVAFLLHDPSNFFKTASFLYRWDFGDGTQLVTN
Sbjct: 29 EFLVGSLVVTQNTSLPWPSSYLTKTVLRVAFLLHDPSNFFKTASFLYRWDFGDGTQLVTN 88
Query: 811 DATVYYNYSIIGTFTIKVKVVAQWEQAMPDAGKGTMQKTGDFSASLKLQETLRGI 975
DATVYYNYSIIGTFTIKVKVVAQWEQAMPDAGKGTMQKTGDFSASLKLQETLRGI
Sbjct: 89 DATVYYNYSIIGTFTIKVKVVAQWEQAMPDAGKGTMQKTGDFSASLKLQETLRGI 143
>ref|NP_001092054.1| transmembrane glycoprotein NMB [Sus scrofa].
Length = 550
Score = 48.5 bits (114), Expect = 6e-06
Identities = 39/146 (26%), Positives = 68/146 (46%), Gaps = 3/146 (2%)
Frame = +1
Query: 448 YRFHWIHTPLMLMGKTDEPFSSTIRVVGNVAGDFPVSVWVTAANCRMCRPMARSFLVLPI 627
Y FH + +G+ S +I G + V V + R P+A+ V +
Sbjct: 172 YVFHTLGQYFQKLGRCS--VSVSINTANVTLGPQVMEVTVYRRHGRTYVPIAKVKDVYVV 229
Query: 628 TEFLVGSLVVTQNTSLPWPSSYLTKTVLRVAF--LLHDPSNFFKTASFLYRWDFGDGTQL 801
T+ + + ++Q + K L + F L+HDPS+F ++ Y+W+FGD T L
Sbjct: 230 TDQIPIFVTMSQKNNRNSSDEIFLKD-LPIIFNVLIHDPSHFLNESAIYYKWNFGDNTGL 288
Query: 802 -VTNDATVYYNYSIIGTFTIKVKVVA 876
V+N+ + + Y + GTF+ + V A
Sbjct: 289 FVSNNPIMNHTYVLNGTFSFNLTVQA 314
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 18,741,026
Number of extensions: 517999
Number of successful extensions: 2765
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 2738
Number of HSP's successfully gapped: 4
Length of query: 325
Length of database: 11,343,932
Length adjustment: 99
Effective length of query: 226
Effective length of database: 8,879,129
Effective search space: 2006683154
Effective search space used: 2006683154
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-004226
(975 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr03 611 e-172
>Sscrofa_Chr03
|| Length = 144787322
Score = 611 bits (308), Expect = e-172
Identities = 308/308 (100%)
Strand = Plus / Minus
Query: 324 aggcctgtatgagcttcaactcaccaccgatggccctgccaccacgggggcagaggtgac 383
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5907362 aggcctgtatgagcttcaactcaccaccgatggccctgccaccacgggggcagaggtgac 5907303
Query: 384 catcacggccagcctggtggctgatgacaacggtagcctggtcctgcccaccagcaccca 443
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5907302 catcacggccagcctggtggctgatgacaacggtagcctggtcctgcccaccagcaccca 5907243
Query: 444 cttctaccgcttccactggatccacaccccactgatgctcatggggaagacggacgagcc 503
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5907242 cttctaccgcttccactggatccacaccccactgatgctcatggggaagacggacgagcc 5907183
Query: 504 cttcagctccaccatccgcgtcgtgggcaacgtggccggggacttcccggtctccgtgtg 563
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5907182 cttcagctccaccatccgcgtcgtgggcaacgtggccggggacttcccggtctccgtgtg 5907123
Query: 564 ggtcacagcggccaactgcaggatgtgccggcctatggccaggagcttcctcgttctccc 623
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5907122 ggtcacagcggccaactgcaggatgtgccggcctatggccaggagcttcctcgttctccc 5907063
Query: 624 catcacag 631
||||||||
Sbjct: 5907062 catcacag 5907055
Score = 452 bits (228), Expect = e-124
Identities = 228/228 (100%)
Strand = Plus / Minus
Query: 99 acacagcgtcccaagacgaggacgagccagcgtcgcgcccgcacctccccgctcacccgg 158
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5913756 acacagcgtcccaagacgaggacgagccagcgtcgcgcccgcacctccccgctcacccgg 5913697
Query: 159 agccgcgcgccccaggagcggccgccaccgcagccgagtcgagccgcgtctgctccgcgc 218
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5913696 agccgcgcgccccaggagcggccgccaccgcagccgagtcgagccgcgtctgctccgcgc 5913637
Query: 219 tccagccgctcccagcgctgccatggccccggccctctggccgcggctcgaccgcatcct 278
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5913636 tccagccgctcccagcgctgccatggccccggccctctggccgcggctcgaccgcatcct 5913577
Query: 279 ctggctggcctgcctcctgcccttggccccggctagggtggccgcagg 326
||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5913576 ctggctggcctgcctcctgcccttggccccggctagggtggccgcagg 5913529
Score = 333 bits (168), Expect = 1e-88
Identities = 168/168 (100%)
Strand = Plus / Minus
Query: 791 gcacccagctggtgaccaacgatgccacagtctattataactattccatcattgggacct 850
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5903146 gcacccagctggtgaccaacgatgccacagtctattataactattccatcattgggacct 5903087
Query: 851 ttaccatcaaggtcaaggtggtggcgcagtgggagcaggcgatgccagacgctgggaagg 910
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5903086 ttaccatcaaggtcaaggtggtggcgcagtgggagcaggcgatgccagacgctgggaagg 5903027
Query: 911 gcactatgcagaagacgggtgacttctctgcctcgctgaagctgcagg 958
||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5903026 gcactatgcagaagacgggtgacttctctgcctcgctgaagctgcagg 5902979
Score = 323 bits (163), Expect = 1e-85
Identities = 163/163 (100%)
Strand = Plus / Minus
Query: 629 cagagttcctggtggggagcctcgttgtcacccagaacacctccctgccctggcccagct 688
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5905708 cagagttcctggtggggagcctcgttgtcacccagaacacctccctgccctggcccagct 5905649
Query: 689 cctacctcaccaagacggtcctcagagttgccttcctcctccatgaccccagcaacttct 748
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5905648 cctacctcaccaagacggtcctcagagttgccttcctcctccatgaccccagcaacttct 5905589
Query: 749 tcaagacggcctcgtttctctacagatgggactttggagacgg 791
|||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5905588 tcaagacggcctcgtttctctacagatgggactttggagacgg 5905546
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 20,844,780
Number of extensions: 177
Number of successful extensions: 177
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 177
Number of HSP's successfully gapped: 4
Length of query: 975
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 954
Effective length of database: 2,808,413,156
Effective search space: 2679226150824
Effective search space used: 2679226150824
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 29 (58.0 bits)