Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-004230
(1399 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001028788.1| gamma-aminobutyric acid receptor-associated ... 243 2e-64
Alignment gi|NP_001029220.1| gamma-aminobutyric acid receptor-associated ... 216 5e-56
Alignment gi|NP_777100.1| gamma-aminobutyric acid receptor-associated pro... 148 1e-35
Alignment gi|NP_001094528.1| microtubule-associated proteins 1A/1B light ... 87 4e-17
Alignment gi|NP_001039640.1| microtubule-associated proteins 1A/1B light ... 82 1e-15
Alignment gi|NP_001001169.1| microtubule-associated proteins 1A/1B light ... 77 5e-14
>ref|NP_001028788.1| gamma-aminobutyric acid receptor-associated protein-like 1 [Bos
taurus].
Length = 117
Score = 243 bits (621), Expect = 2e-64
Identities = 116/117 (99%), Positives = 117/117 (100%)
Frame = +3
Query: 246 MKFQYKEDHPFEYRKKEGEKIRKKYPDRVPVIVEKAPKARVPDLDKRKYLVPSDLTVGQF 425
MKFQYKEDHPFEYRKKEGEKIRKKYPDRVPVIVEKAPKARVPDLDKRKYLVPSDLTVGQF
Sbjct: 1 MKFQYKEDHPFEYRKKEGEKIRKKYPDRVPVIVEKAPKARVPDLDKRKYLVPSDLTVGQF 60
Query: 426 YFLIRKRIHLRPEDALFFFVNNTIPPTSATMGQLYEDNHEEDYFLYVAYSDESVYGE 596
YFLIRKRIHLRPEDALFFFVNNTIPPTSATMGQLYEDNHEEDYFLYVAYSDESVYG+
Sbjct: 61 YFLIRKRIHLRPEDALFFFVNNTIPPTSATMGQLYEDNHEEDYFLYVAYSDESVYGK 117
>ref|NP_001029220.1| gamma-aminobutyric acid receptor-associated protein [Bos taurus].
Length = 117
Score = 216 bits (549), Expect = 5e-56
Identities = 101/116 (87%), Positives = 110/116 (94%)
Frame = +3
Query: 246 MKFQYKEDHPFEYRKKEGEKIRKKYPDRVPVIVEKAPKARVPDLDKRKYLVPSDLTVGQF 425
MKF YKE+HPFE R+ EGEKIRKKYPDRVPVIVEKAPKAR+ DLDK+KYLVPSDLTVGQF
Sbjct: 1 MKFVYKEEHPFEKRRSEGEKIRKKYPDRVPVIVEKAPKARIGDLDKKKYLVPSDLTVGQF 60
Query: 426 YFLIRKRIHLRPEDALFFFVNNTIPPTSATMGQLYEDNHEEDYFLYVAYSDESVYG 593
YFLIRKRIHLR EDALFFFVNN IPPTSATMGQLY+++HEED+FLY+AYSDESVYG
Sbjct: 61 YFLIRKRIHLRAEDALFFFVNNVIPPTSATMGQLYQEHHEEDFFLYIAYSDESVYG 116
>ref|NP_777100.1| gamma-aminobutyric acid receptor-associated protein-like 2 [Bos
taurus].
Length = 117
Score = 148 bits (373), Expect = 1e-35
Identities = 71/116 (61%), Positives = 88/116 (75%)
Frame = +3
Query: 246 MKFQYKEDHPFEYRKKEGEKIRKKYPDRVPVIVEKAPKARVPDLDKRKYLVPSDLTVGQF 425
MK+ +KEDH E+R E KIR KYPDRVPVIVEK +++ D+DKRKYLVPSD+TV QF
Sbjct: 1 MKWMFKEDHSLEHRCVESAKIRAKYPDRVPVIVEKVSGSQIVDIDKRKYLVPSDITVAQF 60
Query: 426 YFLIRKRIHLRPEDALFFFVNNTIPPTSATMGQLYEDNHEEDYFLYVAYSDESVYG 593
++IRKRI L E A+F FV+ T+P +S TMGQLYE +ED FLYVAYS E+ +G
Sbjct: 61 MWIIRKRIQLPSEKAIFLFVDKTVPQSSLTMGQLYEKEKDEDGFLYVAYSGENTFG 116
>ref|NP_001094528.1| microtubule-associated proteins 1A/1B light chain 3C [Bos taurus].
Length = 148
Score = 87.0 bits (214), Expect = 4e-17
Identities = 43/114 (37%), Positives = 73/114 (64%), Gaps = 2/114 (1%)
Frame = +3
Query: 258 YKEDHPFEYRKKEGEKIRKKYPDRVPVIVEKAPKAR-VPDLDKRKYLVPSDLTVGQFYFL 434
+K+ R++E IR K+P ++PVIVE+ P+ + +P LDK K+LVP +LT+ QF +
Sbjct: 13 FKQRKSLATRREEVAGIRVKFPGKIPVIVERYPREKFLPRLDKTKFLVPQELTMTQFLSV 72
Query: 435 IRKRIHLRPEDALFFFVNN-TIPPTSATMGQLYEDNHEEDYFLYVAYSDESVYG 593
IR R+ L +A + VNN ++ + TM ++Y D +ED F+Y+ Y+ + ++G
Sbjct: 73 IRSRMVLGATEAFYLLVNNKSLGSMNVTMAEIYRDYKDEDGFVYMTYASQEMFG 126
>ref|NP_001039640.1| microtubule-associated proteins 1A/1B light chain 3A [Bos taurus].
Length = 121
Score = 81.6 bits (200), Expect = 1e-15
Identities = 39/114 (34%), Positives = 70/114 (61%), Gaps = 2/114 (1%)
Frame = +3
Query: 258 YKEDHPFEYRKKEGEKIRKKYPDRVPVIVEKAP-KARVPDLDKRKYLVPSDLTVGQFYFL 434
+K+ F R KE ++IR+++P ++PVI+E+ + ++P LDK K+LVP + + + +
Sbjct: 7 FKQRRSFADRCKEVQQIREQHPSKIPVIIERYKGEKQLPVLDKTKFLVPDHVNMSELVKI 66
Query: 435 IRKRIHLRPEDALFFFVN-NTIPPTSATMGQLYEDNHEEDYFLYVAYSDESVYG 593
IR+R+ L P A F VN +++ S + +YE +ED FLY+ Y+ + +G
Sbjct: 67 IRRRLQLNPTQAFFLLVNQHSMVSVSTPIADIYEQEKDEDGFLYMVYASQETFG 120
>ref|NP_001001169.1| microtubule-associated proteins 1A/1B light chain 3B [Bos taurus].
Length = 125
Score = 76.6 bits (187), Expect = 5e-14
Identities = 37/114 (32%), Positives = 69/114 (60%), Gaps = 2/114 (1%)
Frame = +3
Query: 258 YKEDHPFEYRKKEGEKIRKKYPDRVPVIVEKAP-KARVPDLDKRKYLVPSDLTVGQFYFL 434
+K+ FE R ++ IR+++P ++PVI+E+ + ++P LDK K+LVP + + + +
Sbjct: 7 FKQRRTFEQRVEDVRLIREQHPTKIPVIIERYKGEKQLPVLDKTKFLVPDHVNMSELIKI 66
Query: 435 IRKRIHLRPEDALFFFVN-NTIPPTSATMGQLYEDNHEEDYFLYVAYSDESVYG 593
IR+R+ L A F VN +++ S + ++YE +ED FLY+ Y+ + +G
Sbjct: 67 IRRRLQLNANQAFFLLVNGHSMVSVSTPICEVYESEKDEDGFLYMVYASQETFG 120
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 52,806,816
Number of extensions: 1476559
Number of successful extensions: 4670
Number of sequences better than 1.0e-05: 6
Number of HSP's gapped: 4658
Number of HSP's successfully gapped: 6
Length of query: 466
Length of database: 17,681,374
Length adjustment: 106
Effective length of query: 360
Effective length of database: 14,174,046
Effective search space: 5102656560
Effective search space used: 5102656560
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-004230
(1399 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_853144.1| PREDICTED: similar to gamma-aminobutyric acid (... 243 2e-64
Alignment gi|XP_536616.2| PREDICTED: similar to gamma-aminobutyric acid r... 216 5e-56
Alignment gi|XP_857483.1| PREDICTED: similar to gamma-aminobutyric acid r... 178 1e-44
Alignment gi|XP_536778.2| PREDICTED: similar to GABA(A) receptor-associat... 148 1e-35
Alignment gi|XP_854448.1| PREDICTED: similar to microtubule-associated pr... 87 3e-17
Alignment gi|XP_863854.1| PREDICTED: similar to microtubule-associated pr... 80 6e-15
Alignment gi|XP_534391.2| PREDICTED: similar to microtubule-associated pr... 80 6e-15
Alignment gi|XP_536756.2| PREDICTED: similar to microtubule-associated pr... 78 2e-14
Alignment gi|XP_866950.1| PREDICTED: similar to gamma-aminobutyric acid (... 60 5e-09
>ref|XP_853144.1| PREDICTED: similar to gamma-aminobutyric acid (GABA(A))
receptor-associated protein-like 1 isoform 1 [Canis
familiaris].
Length = 117
Score = 243 bits (621), Expect = 2e-64
Identities = 116/117 (99%), Positives = 117/117 (100%)
Frame = +3
Query: 246 MKFQYKEDHPFEYRKKEGEKIRKKYPDRVPVIVEKAPKARVPDLDKRKYLVPSDLTVGQF 425
MKFQYKEDHPFEYRKKEGEKIRKKYPDRVPVIVEKAPKARVPDLDKRKYLVPSDLTVGQF
Sbjct: 1 MKFQYKEDHPFEYRKKEGEKIRKKYPDRVPVIVEKAPKARVPDLDKRKYLVPSDLTVGQF 60
Query: 426 YFLIRKRIHLRPEDALFFFVNNTIPPTSATMGQLYEDNHEEDYFLYVAYSDESVYGE 596
YFLIRKRIHLRPEDALFFFVNNTIPPTSATMGQLYEDNHEEDYFLYVAYSDESVYG+
Sbjct: 61 YFLIRKRIHLRPEDALFFFVNNTIPPTSATMGQLYEDNHEEDYFLYVAYSDESVYGK 117
>ref|XP_536616.2| PREDICTED: similar to gamma-aminobutyric acid receptor associated
protein isoform 1 [Canis familiaris].
Length = 117
Score = 216 bits (549), Expect = 5e-56
Identities = 101/116 (87%), Positives = 110/116 (94%)
Frame = +3
Query: 246 MKFQYKEDHPFEYRKKEGEKIRKKYPDRVPVIVEKAPKARVPDLDKRKYLVPSDLTVGQF 425
MKF YKE+HPFE R+ EGEKIRKKYPDRVPVIVEKAPKAR+ DLDK+KYLVPSDLTVGQF
Sbjct: 1 MKFVYKEEHPFEKRRSEGEKIRKKYPDRVPVIVEKAPKARIGDLDKKKYLVPSDLTVGQF 60
Query: 426 YFLIRKRIHLRPEDALFFFVNNTIPPTSATMGQLYEDNHEEDYFLYVAYSDESVYG 593
YFLIRKRIHLR EDALFFFVNN IPPTSATMGQLY+++HEED+FLY+AYSDESVYG
Sbjct: 61 YFLIRKRIHLRAEDALFFFVNNVIPPTSATMGQLYQEHHEEDFFLYIAYSDESVYG 116
>ref|XP_857483.1| PREDICTED: similar to gamma-aminobutyric acid receptor associated
protein isoform 2 [Canis familiaris].
Length = 98
Score = 178 bits (452), Expect = 1e-44
Identities = 85/96 (88%), Positives = 90/96 (93%)
Frame = +3
Query: 246 MKFQYKEDHPFEYRKKEGEKIRKKYPDRVPVIVEKAPKARVPDLDKRKYLVPSDLTVGQF 425
MKF YKE+HPFE R+ EGEKIRKKYPDRVPVIVEKAPKAR+ DLDK+KYLVPSDLTVGQF
Sbjct: 1 MKFVYKEEHPFEKRRSEGEKIRKKYPDRVPVIVEKAPKARIGDLDKKKYLVPSDLTVGQF 60
Query: 426 YFLIRKRIHLRPEDALFFFVNNTIPPTSATMGQLYE 533
YFLIRKRIHLR EDALFFFVNN IPPTSATMGQLY+
Sbjct: 61 YFLIRKRIHLRAEDALFFFVNNVIPPTSATMGQLYQ 96
>ref|XP_536778.2| PREDICTED: similar to GABA(A) receptor-associated protein like 2
[Canis familiaris].
Length = 117
Score = 148 bits (373), Expect = 1e-35
Identities = 71/116 (61%), Positives = 88/116 (75%)
Frame = +3
Query: 246 MKFQYKEDHPFEYRKKEGEKIRKKYPDRVPVIVEKAPKARVPDLDKRKYLVPSDLTVGQF 425
MK+ +KEDH E+R E KIR KYPDRVPVIVEK +++ D+DKRKYLVPSD+TV QF
Sbjct: 1 MKWMFKEDHSLEHRCVESAKIRAKYPDRVPVIVEKVSGSQIVDIDKRKYLVPSDITVAQF 60
Query: 426 YFLIRKRIHLRPEDALFFFVNNTIPPTSATMGQLYEDNHEEDYFLYVAYSDESVYG 593
++IRKRI L E A+F FV+ T+P +S TMGQLYE +ED FLYVAYS E+ +G
Sbjct: 61 MWIIRKRIQLPSEKAIFLFVDKTVPQSSLTMGQLYEKEKDEDGFLYVAYSGENTFG 116
>ref|XP_854448.1| PREDICTED: similar to microtubule-associated protein 1 light chain
3 gamma [Canis familiaris].
Length = 169
Score = 87.4 bits (215), Expect = 3e-17
Identities = 44/114 (38%), Positives = 74/114 (64%), Gaps = 2/114 (1%)
Frame = +3
Query: 258 YKEDHPFEYRKKEGEKIRKKYPDRVPVIVEKAPKAR-VPDLDKRKYLVPSDLTVGQFYFL 434
+K+ R++E IR K+P+++PVIVE+ P+ + +P LDK K+LVP +LT+ QF +
Sbjct: 13 FKQRKSLATRQEEVAGIRAKFPNKIPVIVERYPREKFLPLLDKTKFLVPQELTMIQFLSI 72
Query: 435 IRKRIHLRPEDALFFFVNN-TIPPTSATMGQLYEDNHEEDYFLYVAYSDESVYG 593
IR R+ L +A + VNN ++ S TM ++Y D +ED F+Y+ Y+ + ++G
Sbjct: 73 IRSRLVLGATEAFYLLVNNRSLVSMSMTMAEVYRDYKDEDGFVYMTYASQEMFG 126
>ref|XP_863854.1| PREDICTED: similar to microtubule-associated protein 1 light chain
3 alpha isoform 2 [Canis familiaris].
Length = 121
Score = 79.7 bits (195), Expect = 6e-15
Identities = 38/114 (33%), Positives = 69/114 (60%), Gaps = 2/114 (1%)
Frame = +3
Query: 258 YKEDHPFEYRKKEGEKIRKKYPDRVPVIVEKAP-KARVPDLDKRKYLVPSDLTVGQFYFL 434
+K+ F R KE ++IR ++P ++PVI+E+ + ++P LDK K+LVP + + + +
Sbjct: 7 FKQRRTFADRCKEVQQIRDQHPSKIPVIIERYKGEKQLPVLDKTKFLVPDHVNMSELVKI 66
Query: 435 IRKRIHLRPEDALFFFVN-NTIPPTSATMGQLYEDNHEEDYFLYVAYSDESVYG 593
IR+R+ L P A F VN +++ S + +YE ++D FLY+ Y+ + +G
Sbjct: 67 IRRRLQLNPTQAFFLLVNQHSMVSVSTPIADIYEQEKDDDGFLYMVYASQETFG 120
>ref|XP_534391.2| PREDICTED: similar to microtubule-associated protein 1 light chain
3 alpha isoform 1 [Canis familiaris].
Length = 121
Score = 79.7 bits (195), Expect = 6e-15
Identities = 38/114 (33%), Positives = 69/114 (60%), Gaps = 2/114 (1%)
Frame = +3
Query: 258 YKEDHPFEYRKKEGEKIRKKYPDRVPVIVEKAP-KARVPDLDKRKYLVPSDLTVGQFYFL 434
+K+ F R KE ++IR ++P ++PVI+E+ + ++P LDK K+LVP + + + +
Sbjct: 7 FKQRRTFADRCKEVQQIRDQHPSKIPVIIERYKGEKQLPVLDKTKFLVPDHVNMSELVKI 66
Query: 435 IRKRIHLRPEDALFFFVN-NTIPPTSATMGQLYEDNHEEDYFLYVAYSDESVYG 593
IR+R+ L P A F VN +++ S + +YE ++D FLY+ Y+ + +G
Sbjct: 67 IRRRLQLNPTQAFFLLVNQHSMVSVSTPIADIYEQEKDDDGFLYMVYASQETFG 120
>ref|XP_536756.2| PREDICTED: similar to microtubule-associated proteins 1A/1B light
chain 3 [Canis familiaris].
Length = 125
Score = 77.8 bits (190), Expect = 2e-14
Identities = 37/114 (32%), Positives = 69/114 (60%), Gaps = 2/114 (1%)
Frame = +3
Query: 258 YKEDHPFEYRKKEGEKIRKKYPDRVPVIVEKAP-KARVPDLDKRKYLVPSDLTVGQFYFL 434
+K+ FE R ++ IR+++P ++PVI+E+ + ++P LDK K+LVP + + + +
Sbjct: 7 FKQRRTFEQRVEDVRLIREQHPTKIPVIIERYKGEKQLPVLDKTKFLVPDHVNMSELIKI 66
Query: 435 IRKRIHLRPEDALFFFVN-NTIPPTSATMGQLYEDNHEEDYFLYVAYSDESVYG 593
IR+R+ L A F VN +++ S + ++YE +ED FLY+ Y+ + +G
Sbjct: 67 IRRRLQLNANQAFFLLVNGHSMVSVSTPISEVYESEKDEDGFLYMVYASQETFG 120
>ref|XP_866950.1| PREDICTED: similar to gamma-aminobutyric acid (GABA(A))
receptor-associated protein-like 1 isoform 2 [Canis
familiaris].
Length = 27
Score = 60.1 bits (144), Expect = 5e-09
Identities = 26/27 (96%), Positives = 27/27 (100%)
Frame = +3
Query: 516 MGQLYEDNHEEDYFLYVAYSDESVYGE 596
MGQLYEDNHEEDYFLYVAYSDESVYG+
Sbjct: 1 MGQLYEDNHEEDYFLYVAYSDESVYGK 27
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 55,250,016
Number of extensions: 1531611
Number of successful extensions: 4920
Number of sequences better than 1.0e-05: 9
Number of HSP's gapped: 4911
Number of HSP's successfully gapped: 9
Length of query: 466
Length of database: 18,874,504
Length adjustment: 106
Effective length of query: 360
Effective length of database: 15,340,888
Effective search space: 5522719680
Effective search space used: 5522719680
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-004230
(1399 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_113600.1| gamma-aminobutyric acid receptor-associated pro... 243 2e-64
Alignment gi|NP_009209.1| gamma-aminobutyric acid receptor-associated pro... 216 5e-56
Alignment gi|NP_009216.1| gamma-aminobutyric acid receptor-associated pro... 148 1e-35
Alignment gi|NP_001004343.1| microtubule-associated proteins 1A/1B light ... 92 9e-19
Alignment gi|NP_115903.1| microtubule-associated proteins 1A/1B light cha... 81 3e-15
Alignment gi|NP_073729.1| microtubule-associated proteins 1A/1B light cha... 78 2e-14
Alignment gi|NP_852610.1| microtubule-associated proteins 1A/1B light cha... 77 3e-14
Alignment gi|NP_001078950.1| microtubule-associated proteins 1A/1B light ... 74 2e-13
Alignment gi|XP_373277.6| PREDICTED: microtubule-associated proteins 1A/1... 63 6e-10
Alignment gi|XP_001716847.1| PREDICTED: microtubule-associated proteins 1... 63 6e-10
>ref|NP_113600.1| gamma-aminobutyric acid receptor-associated protein-like 1 [Homo
sapiens].
Length = 117
Score = 243 bits (621), Expect = 2e-64
Identities = 116/117 (99%), Positives = 117/117 (100%)
Frame = +3
Query: 246 MKFQYKEDHPFEYRKKEGEKIRKKYPDRVPVIVEKAPKARVPDLDKRKYLVPSDLTVGQF 425
MKFQYKEDHPFEYRKKEGEKIRKKYPDRVPVIVEKAPKARVPDLDKRKYLVPSDLTVGQF
Sbjct: 1 MKFQYKEDHPFEYRKKEGEKIRKKYPDRVPVIVEKAPKARVPDLDKRKYLVPSDLTVGQF 60
Query: 426 YFLIRKRIHLRPEDALFFFVNNTIPPTSATMGQLYEDNHEEDYFLYVAYSDESVYGE 596
YFLIRKRIHLRPEDALFFFVNNTIPPTSATMGQLYEDNHEEDYFLYVAYSDESVYG+
Sbjct: 61 YFLIRKRIHLRPEDALFFFVNNTIPPTSATMGQLYEDNHEEDYFLYVAYSDESVYGK 117
>ref|NP_009209.1| gamma-aminobutyric acid receptor-associated protein [Homo sapiens].
Length = 117
Score = 216 bits (549), Expect = 5e-56
Identities = 101/116 (87%), Positives = 110/116 (94%)
Frame = +3
Query: 246 MKFQYKEDHPFEYRKKEGEKIRKKYPDRVPVIVEKAPKARVPDLDKRKYLVPSDLTVGQF 425
MKF YKE+HPFE R+ EGEKIRKKYPDRVPVIVEKAPKAR+ DLDK+KYLVPSDLTVGQF
Sbjct: 1 MKFVYKEEHPFEKRRSEGEKIRKKYPDRVPVIVEKAPKARIGDLDKKKYLVPSDLTVGQF 60
Query: 426 YFLIRKRIHLRPEDALFFFVNNTIPPTSATMGQLYEDNHEEDYFLYVAYSDESVYG 593
YFLIRKRIHLR EDALFFFVNN IPPTSATMGQLY+++HEED+FLY+AYSDESVYG
Sbjct: 61 YFLIRKRIHLRAEDALFFFVNNVIPPTSATMGQLYQEHHEEDFFLYIAYSDESVYG 116
>ref|NP_009216.1| gamma-aminobutyric acid receptor-associated protein-like 2 [Homo
sapiens].
Length = 117
Score = 148 bits (373), Expect = 1e-35
Identities = 71/116 (61%), Positives = 88/116 (75%)
Frame = +3
Query: 246 MKFQYKEDHPFEYRKKEGEKIRKKYPDRVPVIVEKAPKARVPDLDKRKYLVPSDLTVGQF 425
MK+ +KEDH E+R E KIR KYPDRVPVIVEK +++ D+DKRKYLVPSD+TV QF
Sbjct: 1 MKWMFKEDHSLEHRCVESAKIRAKYPDRVPVIVEKVSGSQIVDIDKRKYLVPSDITVAQF 60
Query: 426 YFLIRKRIHLRPEDALFFFVNNTIPPTSATMGQLYEDNHEEDYFLYVAYSDESVYG 593
++IRKRI L E A+F FV+ T+P +S TMGQLYE +ED FLYVAYS E+ +G
Sbjct: 61 MWIIRKRIQLPSEKAIFLFVDKTVPQSSLTMGQLYEKEKDEDGFLYVAYSGENTFG 116
>ref|NP_001004343.1| microtubule-associated proteins 1A/1B light chain 3C [Homo
sapiens].
Length = 147
Score = 92.4 bits (228), Expect = 9e-19
Identities = 45/114 (39%), Positives = 74/114 (64%), Gaps = 2/114 (1%)
Frame = +3
Query: 258 YKEDHPFEYRKKEGEKIRKKYPDRVPVIVEKAPKAR-VPDLDKRKYLVPSDLTVGQFYFL 434
+K+ R++E IR K+P+++PV+VE+ P+ +P LDK K+LVP +LT+ QF +
Sbjct: 13 FKQRKSLAIRQEEVAGIRAKFPNKIPVVVERYPRETFLPPLDKTKFLVPQELTMTQFLSI 72
Query: 435 IRKRIHLRPEDALFFFVNN-TIPPTSATMGQLYEDNHEEDYFLYVAYSDESVYG 593
IR R+ LR +A + VNN ++ SATM ++Y D +ED F+Y+ Y+ + +G
Sbjct: 73 IRSRMVLRATEAFYLLVNNKSLVSMSATMAEIYRDYKDEDGFVYMTYASQETFG 126
>ref|NP_115903.1| microtubule-associated proteins 1A/1B light chain 3A isoform a
[Homo sapiens].
Length = 121
Score = 80.9 bits (198), Expect = 3e-15
Identities = 39/114 (34%), Positives = 69/114 (60%), Gaps = 2/114 (1%)
Frame = +3
Query: 258 YKEDHPFEYRKKEGEKIRKKYPDRVPVIVEKAP-KARVPDLDKRKYLVPSDLTVGQFYFL 434
+K+ F R KE ++IR ++P ++PVI+E+ + ++P LDK K+LVP + + + +
Sbjct: 7 FKQRRSFADRCKEVQQIRDQHPSKIPVIIERYKGEKQLPVLDKTKFLVPDHVNMSELVKI 66
Query: 435 IRKRIHLRPEDALFFFVN-NTIPPTSATMGQLYEDNHEEDYFLYVAYSDESVYG 593
IR+R+ L P A F VN +++ S + +YE +ED FLY+ Y+ + +G
Sbjct: 67 IRRRLQLNPTQAFFLLVNQHSMVSVSTPIADIYEQEKDEDGFLYMVYASQETFG 120
>ref|NP_073729.1| microtubule-associated proteins 1A/1B light chain 3B [Homo
sapiens].
Length = 125
Score = 77.8 bits (190), Expect = 2e-14
Identities = 37/114 (32%), Positives = 69/114 (60%), Gaps = 2/114 (1%)
Frame = +3
Query: 258 YKEDHPFEYRKKEGEKIRKKYPDRVPVIVEKAP-KARVPDLDKRKYLVPSDLTVGQFYFL 434
+K+ FE R ++ IR+++P ++PVI+E+ + ++P LDK K+LVP + + + +
Sbjct: 7 FKQRRTFEQRVEDVRLIREQHPTKIPVIIERYKGEKQLPVLDKTKFLVPDHVNMSELIKI 66
Query: 435 IRKRIHLRPEDALFFFVN-NTIPPTSATMGQLYEDNHEEDYFLYVAYSDESVYG 593
IR+R+ L A F VN +++ S + ++YE +ED FLY+ Y+ + +G
Sbjct: 67 IRRRLQLNANQAFFLLVNGHSMVSVSTPISEVYESEKDEDGFLYMVYASQETFG 120
>ref|NP_852610.1| microtubule-associated proteins 1A/1B light chain 3A isoform b
[Homo sapiens].
Length = 125
Score = 77.4 bits (189), Expect = 3e-14
Identities = 37/105 (35%), Positives = 65/105 (61%), Gaps = 2/105 (1%)
Frame = +3
Query: 285 RKKEGEKIRKKYPDRVPVIVEKAP-KARVPDLDKRKYLVPSDLTVGQFYFLIRKRIHLRP 461
R KE ++IR ++P ++PVI+E+ + ++P LDK K+LVP + + + +IR+R+ L P
Sbjct: 20 RCKEVQQIRDQHPSKIPVIIERYKGEKQLPVLDKTKFLVPDHVNMSELVKIIRRRLQLNP 79
Query: 462 EDALFFFVN-NTIPPTSATMGQLYEDNHEEDYFLYVAYSDESVYG 593
A F VN +++ S + +YE +ED FLY+ Y+ + +G
Sbjct: 80 TQAFFLLVNQHSMVSVSTPIADIYEQEKDEDGFLYMVYASQETFG 124
>ref|NP_001078950.1| microtubule-associated proteins 1A/1B light chain 3 beta 2
precursor [Homo sapiens].
Length = 125
Score = 74.3 bits (181), Expect = 2e-13
Identities = 36/114 (31%), Positives = 68/114 (59%), Gaps = 2/114 (1%)
Frame = +3
Query: 258 YKEDHPFEYRKKEGEKIRKKYPDRVPVIVEKAP-KARVPDLDKRKYLVPSDLTVGQFYFL 434
+K+ FE R ++ IR+++P ++PVI+E+ + ++P LDK K+LVP + + + +
Sbjct: 7 FKQRRTFEQRVEDVRLIREQHPTKIPVIIERYKGEKQLPVLDKTKFLVPDHVNMSELIKI 66
Query: 435 IRKRIHLRPEDALFFFVN-NTIPPTSATMGQLYEDNHEEDYFLYVAYSDESVYG 593
IR+R+ L A F VN +++ S + ++YE +ED FLY+ + + +G
Sbjct: 67 IRRRLQLNANQAFFLLVNGHSMVSVSTPISEVYESEKDEDGFLYMVCASQETFG 120
>ref|XP_373277.6| PREDICTED: microtubule-associated proteins 1A/1B light chain
3B-like [Homo sapiens].
Length = 150
Score = 63.2 bits (152), Expect = 6e-10
Identities = 36/116 (31%), Positives = 66/116 (56%), Gaps = 4/116 (3%)
Frame = +3
Query: 258 YKEDHPFEYRKKEGEKIRKKYPDRVPVIVEKAP-KARVPDLDKRKYLVPS--DLTVGQFY 428
+K+ F+ R + I++++P + PVI E+ + ++P LDK K+LVP D+ + +
Sbjct: 31 FKQRRTFQQRV-DVRLIQEQHPAKSPVITERYQGEKQLPVLDKTKFLVPDVRDVNMSELI 89
Query: 429 FLIRKRIHLRPEDALFFFVN-NTIPPTSATMGQLYEDNHEEDYFLYVAYSDESVYG 593
+IR+R+ L A VN +++ S + ++YE +ED FLY+ Y+ + YG
Sbjct: 90 KIIRRRLQLNANQAFLLVVNGHSMVSVSTPVSEVYESEKDEDGFLYMVYASQETYG 145
>ref|XP_001716847.1| PREDICTED: microtubule-associated proteins 1A/1B light chain
3B-like [Homo sapiens].
Length = 157
Score = 63.2 bits (152), Expect = 6e-10
Identities = 36/116 (31%), Positives = 66/116 (56%), Gaps = 4/116 (3%)
Frame = +3
Query: 258 YKEDHPFEYRKKEGEKIRKKYPDRVPVIVEKAP-KARVPDLDKRKYLVPS--DLTVGQFY 428
+K+ F+ R + I++++P + PVI E+ + ++P LDK K+LVP D+ + +
Sbjct: 38 FKQRRTFQQRV-DVRLIQEQHPAKSPVITERYQGEKQLPVLDKTKFLVPDVRDVNMSELI 96
Query: 429 FLIRKRIHLRPEDALFFFVN-NTIPPTSATMGQLYEDNHEEDYFLYVAYSDESVYG 593
+IR+R+ L A VN +++ S + ++YE +ED FLY+ Y+ + YG
Sbjct: 97 KIIRRRLQLNANQAFLLVVNGHSMVSVSTPVSEVYESEKDEDGFLYMVYASQETYG 152
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 54,060,603
Number of extensions: 1496532
Number of successful extensions: 4582
Number of sequences better than 1.0e-05: 10
Number of HSP's gapped: 4566
Number of HSP's successfully gapped: 10
Length of query: 466
Length of database: 18,297,164
Length adjustment: 106
Effective length of query: 360
Effective length of database: 14,802,980
Effective search space: 5329072800
Effective search space used: 5329072800
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-004230
(1399 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_065615.1| gamma-aminobutyric acid receptor-associated pro... 243 2e-64
Alignment gi|NP_062723.1| gamma-aminobutyric acid receptor-associated pro... 216 4e-56
Alignment gi|XP_001478273.1| PREDICTED: gamma-aminobutyric acid receptor-... 149 5e-36
Alignment gi|NP_080969.2| gamma-aminobutyric acid receptor-associated pro... 148 1e-35
Alignment gi|NP_080011.1| microtubule-associated proteins 1A/1B light cha... 81 2e-15
Alignment gi|NP_080436.1| microtubule-associated proteins 1A/1B light cha... 78 1e-14
>ref|NP_065615.1| gamma-aminobutyric acid receptor-associated protein-like 1 [Mus
musculus].
Length = 117
Score = 243 bits (621), Expect = 2e-64
Identities = 116/117 (99%), Positives = 117/117 (100%)
Frame = +3
Query: 246 MKFQYKEDHPFEYRKKEGEKIRKKYPDRVPVIVEKAPKARVPDLDKRKYLVPSDLTVGQF 425
MKFQYKEDHPFEYRKKEGEKIRKKYPDRVPVIVEKAPKARVPDLDKRKYLVPSDLTVGQF
Sbjct: 1 MKFQYKEDHPFEYRKKEGEKIRKKYPDRVPVIVEKAPKARVPDLDKRKYLVPSDLTVGQF 60
Query: 426 YFLIRKRIHLRPEDALFFFVNNTIPPTSATMGQLYEDNHEEDYFLYVAYSDESVYGE 596
YFLIRKRIHLRPEDALFFFVNNTIPPTSATMGQLYEDNHEEDYFLYVAYSDESVYG+
Sbjct: 61 YFLIRKRIHLRPEDALFFFVNNTIPPTSATMGQLYEDNHEEDYFLYVAYSDESVYGK 117
>ref|NP_062723.1| gamma-aminobutyric acid receptor-associated protein [Mus musculus].
Length = 117
Score = 216 bits (549), Expect = 4e-56
Identities = 101/116 (87%), Positives = 110/116 (94%)
Frame = +3
Query: 246 MKFQYKEDHPFEYRKKEGEKIRKKYPDRVPVIVEKAPKARVPDLDKRKYLVPSDLTVGQF 425
MKF YKE+HPFE R+ EGEKIRKKYPDRVPVIVEKAPKAR+ DLDK+KYLVPSDLTVGQF
Sbjct: 1 MKFVYKEEHPFEKRRSEGEKIRKKYPDRVPVIVEKAPKARIGDLDKKKYLVPSDLTVGQF 60
Query: 426 YFLIRKRIHLRPEDALFFFVNNTIPPTSATMGQLYEDNHEEDYFLYVAYSDESVYG 593
YFLIRKRIHLR EDALFFFVNN IPPTSATMGQLY+++HEED+FLY+AYSDESVYG
Sbjct: 61 YFLIRKRIHLRAEDALFFFVNNVIPPTSATMGQLYQEHHEEDFFLYIAYSDESVYG 116
>ref|XP_001478273.1| PREDICTED: gamma-aminobutyric acid receptor-associated protein-like
2-like [Mus musculus].
Length = 117
Score = 149 bits (376), Expect = 5e-36
Identities = 72/116 (62%), Positives = 88/116 (75%)
Frame = +3
Query: 246 MKFQYKEDHPFEYRKKEGEKIRKKYPDRVPVIVEKAPKARVPDLDKRKYLVPSDLTVGQF 425
MK+ +KEDH E+R E KIR KYPDRVPVIVEK +++ D+DKRKYLVPSD+TV QF
Sbjct: 1 MKWMFKEDHSLEHRCVESAKIRAKYPDRVPVIVEKVSGSQIVDIDKRKYLVPSDITVAQF 60
Query: 426 YFLIRKRIHLRPEDALFFFVNNTIPPTSATMGQLYEDNHEEDYFLYVAYSDESVYG 593
++IRKRI L E A+F FV+ T+P +S TMGQLYE EED FLYVAYS E+ +G
Sbjct: 61 MWIIRKRIQLPSEKAIFLFVDKTVPQSSLTMGQLYEKEKEEDGFLYVAYSGENTFG 116
>ref|NP_080969.2| gamma-aminobutyric acid receptor-associated protein-like 2 [Mus
musculus].
Length = 117
Score = 148 bits (373), Expect = 1e-35
Identities = 71/116 (61%), Positives = 88/116 (75%)
Frame = +3
Query: 246 MKFQYKEDHPFEYRKKEGEKIRKKYPDRVPVIVEKAPKARVPDLDKRKYLVPSDLTVGQF 425
MK+ +KEDH E+R E KIR KYPDRVPVIVEK +++ D+DKRKYLVPSD+TV QF
Sbjct: 1 MKWMFKEDHSLEHRCVESAKIRAKYPDRVPVIVEKVSGSQIVDIDKRKYLVPSDITVAQF 60
Query: 426 YFLIRKRIHLRPEDALFFFVNNTIPPTSATMGQLYEDNHEEDYFLYVAYSDESVYG 593
++IRKRI L E A+F FV+ T+P +S TMGQLYE +ED FLYVAYS E+ +G
Sbjct: 61 MWIIRKRIQLPSEKAIFLFVDKTVPQSSLTMGQLYEKEKDEDGFLYVAYSGENTFG 116
>ref|NP_080011.1| microtubule-associated proteins 1A/1B light chain 3A [Mus
musculus].
Length = 121
Score = 80.9 bits (198), Expect = 2e-15
Identities = 39/114 (34%), Positives = 69/114 (60%), Gaps = 2/114 (1%)
Frame = +3
Query: 258 YKEDHPFEYRKKEGEKIRKKYPDRVPVIVEKAP-KARVPDLDKRKYLVPSDLTVGQFYFL 434
+K+ F R KE ++IR ++P ++PVI+E+ + ++P LDK K+LVP + + + +
Sbjct: 7 FKQRRSFADRCKEVQQIRDQHPSKIPVIIERYKGEKQLPVLDKTKFLVPDHVNMSELVKI 66
Query: 435 IRKRIHLRPEDALFFFVN-NTIPPTSATMGQLYEDNHEEDYFLYVAYSDESVYG 593
IR+R+ L P A F VN +++ S + +YE +ED FLY+ Y+ + +G
Sbjct: 67 IRRRLQLNPTQAFFLLVNQHSMVSVSTPIADIYEQEKDEDGFLYMVYASQETFG 120
>ref|NP_080436.1| microtubule-associated proteins 1A/1B light chain 3B [Mus
musculus].
Length = 125
Score = 78.2 bits (191), Expect = 1e-14
Identities = 37/114 (32%), Positives = 69/114 (60%), Gaps = 2/114 (1%)
Frame = +3
Query: 258 YKEDHPFEYRKKEGEKIRKKYPDRVPVIVEKAP-KARVPDLDKRKYLVPSDLTVGQFYFL 434
+K+ FE R ++ IR+++P ++PVI+E+ + ++P LDK K+LVP + + + +
Sbjct: 7 FKQRRSFEQRVEDVRLIREQHPTKIPVIIERYKGEKQLPVLDKTKFLVPDHVNMSELIKI 66
Query: 435 IRKRIHLRPEDALFFFVN-NTIPPTSATMGQLYEDNHEEDYFLYVAYSDESVYG 593
IR+R+ L A F VN +++ S + ++YE +ED FLY+ Y+ + +G
Sbjct: 67 IRRRLQLNANQAFFLLVNGHSMVSVSTPISEVYESERDEDGFLYMVYASQETFG 120
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 45,663,930
Number of extensions: 1243752
Number of successful extensions: 3723
Number of sequences better than 1.0e-05: 6
Number of HSP's gapped: 3712
Number of HSP's successfully gapped: 6
Length of query: 466
Length of database: 15,617,559
Length adjustment: 105
Effective length of query: 361
Effective length of database: 12,463,779
Effective search space: 4499424219
Effective search space used: 4499424219
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-004230
(1399 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_003126527.1| PREDICTED: gamma-aminobutyric acid receptor-... 245 5e-65
Alignment gi|NP_001177216.1| gamma-aminobutyric acid receptor-associated ... 243 1e-64
Alignment gi|XP_003355624.1| PREDICTED: gamma-aminobutyric acid receptor-... 222 4e-58
Alignment gi|XP_003354986.1| PREDICTED: gamma-aminobutyric acid receptor-... 216 3e-56
Alignment gi|NP_001177217.1| gamma-aminobutyric acid receptor-associated ... 216 3e-56
Alignment gi|XP_003126907.1| PREDICTED: gamma-aminobutyric acid receptor-... 148 8e-36
Alignment gi|XP_003130606.1| PREDICTED: microtubule-associated proteins 1... 88 1e-17
Alignment gi|NP_001164298.1| microtubule-associated proteins 1A/1B light ... 83 4e-16
Alignment gi|NP_001177219.1| microtubule-associated proteins 1A/1B light ... 77 3e-14
>ref|XP_003126527.1| PREDICTED: gamma-aminobutyric acid receptor-associated protein-like
1-like isoform 1 [Sus scrofa].
Length = 117
Score = 245 bits (625), Expect = 5e-65
Identities = 117/117 (100%), Positives = 117/117 (100%)
Frame = +3
Query: 246 MKFQYKEDHPFEYRKKEGEKIRKKYPDRVPVIVEKAPKARVPDLDKRKYLVPSDLTVGQF 425
MKFQYKEDHPFEYRKKEGEKIRKKYPDRVPVIVEKAPKARVPDLDKRKYLVPSDLTVGQF
Sbjct: 1 MKFQYKEDHPFEYRKKEGEKIRKKYPDRVPVIVEKAPKARVPDLDKRKYLVPSDLTVGQF 60
Query: 426 YFLIRKRIHLRPEDALFFFVNNTIPPTSATMGQLYEDNHEEDYFLYVAYSDESVYGE 596
YFLIRKRIHLRPEDALFFFVNNTIPPTSATMGQLYEDNHEEDYFLYVAYSDESVYGE
Sbjct: 61 YFLIRKRIHLRPEDALFFFVNNTIPPTSATMGQLYEDNHEEDYFLYVAYSDESVYGE 117
>ref|NP_001177216.1| gamma-aminobutyric acid receptor-associated protein-like 1 [Sus
scrofa].
Length = 117
Score = 243 bits (621), Expect = 1e-64
Identities = 116/117 (99%), Positives = 116/117 (99%)
Frame = +3
Query: 246 MKFQYKEDHPFEYRKKEGEKIRKKYPDRVPVIVEKAPKARVPDLDKRKYLVPSDLTVGQF 425
MKFQYKEDHPFEYRKKEGEKIRKKYPDRVPVIVEKAPKARVPDLDKRKYLVPSDLTVGQF
Sbjct: 1 MKFQYKEDHPFEYRKKEGEKIRKKYPDRVPVIVEKAPKARVPDLDKRKYLVPSDLTVGQF 60
Query: 426 YFLIRKRIHLRPEDALFFFVNNTIPPTSATMGQLYEDNHEEDYFLYVAYSDESVYGE 596
YFLIRKRIHLRPEDALFFFVNNTIPPTS TMGQLYEDNHEEDYFLYVAYSDESVYGE
Sbjct: 61 YFLIRKRIHLRPEDALFFFVNNTIPPTSTTMGQLYEDNHEEDYFLYVAYSDESVYGE 117
>ref|XP_003355624.1| PREDICTED: gamma-aminobutyric acid receptor-associated protein-like
1-like [Sus scrofa].
Length = 145
Score = 222 bits (565), Expect = 4e-58
Identities = 107/110 (97%), Positives = 107/110 (97%)
Frame = +3
Query: 246 MKFQYKEDHPFEYRKKEGEKIRKKYPDRVPVIVEKAPKARVPDLDKRKYLVPSDLTVGQF 425
MKFQYKEDHPFEYRKKEGEKIRKKYPDRVPVIVEKAPKARVPDLDKRKYLVPSDLTVGQF
Sbjct: 1 MKFQYKEDHPFEYRKKEGEKIRKKYPDRVPVIVEKAPKARVPDLDKRKYLVPSDLTVGQF 60
Query: 426 YFLIRKRIHLRPEDALFFFVNNTIPPTSATMGQLYEDNHEEDYFLYVAYS 575
YFLIRKRIHLRPEDALFFFVNNTIPPTSATMGQLYEDNHEEDYFL V S
Sbjct: 61 YFLIRKRIHLRPEDALFFFVNNTIPPTSATMGQLYEDNHEEDYFLPVLLS 110
Score = 49.7 bits (117), Expect = 4e-06
Identities = 23/37 (62%), Positives = 23/37 (62%)
Frame = +1
Query: 874 LSCDFHXXXXXXXXXXXXXXTTGNFLLFFSWGRDSVF 984
LSCDFH TTGNFLLFFSWGRDSVF
Sbjct: 109 LSCDFHRRGRRWAGWGQGSWTTGNFLLFFSWGRDSVF 145
>ref|XP_003354986.1| PREDICTED: gamma-aminobutyric acid receptor-associated protein-like
[Sus scrofa].
Length = 117
Score = 216 bits (549), Expect = 3e-56
Identities = 101/116 (87%), Positives = 110/116 (94%)
Frame = +3
Query: 246 MKFQYKEDHPFEYRKKEGEKIRKKYPDRVPVIVEKAPKARVPDLDKRKYLVPSDLTVGQF 425
MKF YKE+HPFE R+ EGEKIRKKYPDRVPVIVEKAPKAR+ DLDK+KYLVPSDLTVGQF
Sbjct: 1 MKFVYKEEHPFEKRRSEGEKIRKKYPDRVPVIVEKAPKARIGDLDKKKYLVPSDLTVGQF 60
Query: 426 YFLIRKRIHLRPEDALFFFVNNTIPPTSATMGQLYEDNHEEDYFLYVAYSDESVYG 593
YFLIRKRIHLR EDALFFFVNN IPPTSATMGQLY+++HEED+FLY+AYSDESVYG
Sbjct: 61 YFLIRKRIHLRAEDALFFFVNNVIPPTSATMGQLYQEHHEEDFFLYIAYSDESVYG 116
>ref|NP_001177217.1| gamma-aminobutyric acid receptor-associated protein [Sus scrofa].
Length = 117
Score = 216 bits (549), Expect = 3e-56
Identities = 101/116 (87%), Positives = 110/116 (94%)
Frame = +3
Query: 246 MKFQYKEDHPFEYRKKEGEKIRKKYPDRVPVIVEKAPKARVPDLDKRKYLVPSDLTVGQF 425
MKF YKE+HPFE R+ EGEKIRKKYPDRVPVIVEKAPKAR+ DLDK+KYLVPSDLTVGQF
Sbjct: 1 MKFVYKEEHPFEKRRSEGEKIRKKYPDRVPVIVEKAPKARIGDLDKKKYLVPSDLTVGQF 60
Query: 426 YFLIRKRIHLRPEDALFFFVNNTIPPTSATMGQLYEDNHEEDYFLYVAYSDESVYG 593
YFLIRKRIHLR EDALFFFVNN IPPTSATMGQLY+++HEED+FLY+AYSDESVYG
Sbjct: 61 YFLIRKRIHLRAEDALFFFVNNVIPPTSATMGQLYQEHHEEDFFLYIAYSDESVYG 116
>ref|XP_003126907.1| PREDICTED: gamma-aminobutyric acid receptor-associated protein-like
2-like [Sus scrofa].
Length = 117
Score = 148 bits (373), Expect = 8e-36
Identities = 71/116 (61%), Positives = 88/116 (75%)
Frame = +3
Query: 246 MKFQYKEDHPFEYRKKEGEKIRKKYPDRVPVIVEKAPKARVPDLDKRKYLVPSDLTVGQF 425
MK+ +KEDH E+R E KIR KYPDRVPVIVEK +++ D+DKRKYLVPSD+TV QF
Sbjct: 1 MKWMFKEDHSLEHRCVESAKIRAKYPDRVPVIVEKVSGSQIVDIDKRKYLVPSDITVAQF 60
Query: 426 YFLIRKRIHLRPEDALFFFVNNTIPPTSATMGQLYEDNHEEDYFLYVAYSDESVYG 593
++IRKRI L E A+F FV+ T+P +S TMGQLYE +ED FLYVAYS E+ +G
Sbjct: 61 MWIIRKRIQLPSEKAIFLFVDKTVPQSSLTMGQLYEKEKDEDGFLYVAYSGENTFG 116
>ref|XP_003130606.1| PREDICTED: microtubule-associated proteins 1A/1B light chain
3C-like [Sus scrofa].
Length = 147
Score = 88.2 bits (217), Expect = 1e-17
Identities = 43/114 (37%), Positives = 74/114 (64%), Gaps = 2/114 (1%)
Frame = +3
Query: 258 YKEDHPFEYRKKEGEKIRKKYPDRVPVIVEKAPKAR-VPDLDKRKYLVPSDLTVGQFYFL 434
+K+ R++E IR K+P ++PVIVE+ P+ + +P LDK K+LVP +LT+ QF +
Sbjct: 13 FKQRKSLATRREEVAGIRMKFPGKIPVIVERYPREKFLPLLDKTKFLVPQELTMTQFLSI 72
Query: 435 IRKRIHLRPEDALFFFVNN-TIPPTSATMGQLYEDNHEEDYFLYVAYSDESVYG 593
IR R+ L +A + VNN ++ + TM ++Y D+ +ED F+Y+ Y+ + ++G
Sbjct: 73 IRSRMVLGATEAFYLLVNNRSLGSMNVTMAEIYRDHKDEDGFVYMTYASQEMFG 126
>ref|NP_001164298.1| microtubule-associated proteins 1A/1B light chain 3A [Sus scrofa].
Length = 121
Score = 82.8 bits (203), Expect = 4e-16
Identities = 39/114 (34%), Positives = 70/114 (61%), Gaps = 2/114 (1%)
Frame = +3
Query: 258 YKEDHPFEYRKKEGEKIRKKYPDRVPVIVEKAP-KARVPDLDKRKYLVPSDLTVGQFYFL 434
+K+ F R+KE ++IR ++P ++PVI+E+ + ++P LDK K+LVP + + + +
Sbjct: 7 FKQRRSFADRRKEVQQIRDQHPSKIPVIIERYKGEKQLPVLDKTKFLVPDHVNMSELVKI 66
Query: 435 IRKRIHLRPEDALFFFVN-NTIPPTSATMGQLYEDNHEEDYFLYVAYSDESVYG 593
IR+R+ L P A F VN +++ S + +YE +ED FLY+ Y+ + +G
Sbjct: 67 IRRRLQLNPTQAFFLLVNQHSMVSVSTPIADIYEQEKDEDGFLYMVYASQETFG 120
>ref|NP_001177219.1| microtubule-associated proteins 1A/1B light chain 3B [Sus scrofa].
Length = 125
Score = 76.6 bits (187), Expect = 3e-14
Identities = 37/114 (32%), Positives = 69/114 (60%), Gaps = 2/114 (1%)
Frame = +3
Query: 258 YKEDHPFEYRKKEGEKIRKKYPDRVPVIVEKAP-KARVPDLDKRKYLVPSDLTVGQFYFL 434
+K+ FE R ++ IR+++P ++PVI+E+ + ++P LDK K+LVP + + + +
Sbjct: 7 FKQRRTFEQRVEDVRLIREQHPTKIPVIIERYKGEKQLPVLDKTKFLVPDHVNMSELIKI 66
Query: 435 IRKRIHLRPEDALFFFVN-NTIPPTSATMGQLYEDNHEEDYFLYVAYSDESVYG 593
IR+R+ L A F VN +++ S + ++YE +ED FLY+ Y+ + +G
Sbjct: 67 IRRRLQLNANQAFFLLVNGHSMVSVSTPICEVYESEKDEDGFLYMVYASQETFG 120
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 34,101,606
Number of extensions: 954578
Number of successful extensions: 2981
Number of sequences better than 1.0e-05: 9
Number of HSP's gapped: 2971
Number of HSP's successfully gapped: 10
Length of query: 466
Length of database: 11,343,932
Length adjustment: 102
Effective length of query: 364
Effective length of database: 8,804,438
Effective search space: 3204815432
Effective search space used: 3204815432
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-004230
(1399 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr05 1392 0.0
>Sscrofa_Chr05
|| Length = 111506441
Score = 1392 bits (702), Expect = 0.0
Identities = 719/727 (98%)
Strand = Plus / Plus
Query: 673 tcccccgtggaggacgacagaggaaaaaacatctggaaacacgaccttgcacacaccatc 732
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 64630551 tcccccgtggaggacgacagaggaaaaaacatctggaaacacgaccttgcacacaccatc 64630610
Query: 733 accacatttccacacactcaactgatannnnnnngctgccttctcggcccagggagaaag 792
||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 64630611 accacatttccacacactcaactgatatttttttgctgccttctcggcccagggagaaag 64630670
Query: 793 cacgtcaggacagagctggcagattggctttggtagaaaaatgaggatgccctctaatct 852
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 64630671 cacgtcaggacagagctggcagattggctttggtagaaaaatgaggatgccctctaatct 64630730
Query: 853 cacaacactaccacgtattaactttcgtgtgatttccatagaagaggcaggaggtgggca 912
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 64630731 cacaacactaccacgtattaactttcgtgtgatttccatagaagaggcaggaggtgggca 64630790
Query: 913 ggctggggccagggatcgtggaccaccggtaacttcctgctcttcttctcttggggcaga 972
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 64630791 ggctggggccagggatcgtggaccaccggtaacttcctgctcttcttctcttggggcaga 64630850
Query: 973 gattctgttttttgacatttgcacaagacaggtagggaaaggggagggaatgtttgagga 1032
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 64630851 gattctgttttttgacatttgcacaagacaggtagggaaaggggagggaatgtttgagga 64630910
Query: 1033 ctgctggtagtggaccattgctggggaccaaaagagacctattgtgatgaaagccttgtg 1092
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 64630911 ctgctggtagtggaccattgctggggaccaaaagagacgtattgtgatgaaagccttgtg 64630970
Query: 1093 acccccgacctctcctatctccacccctcctcccgaatcccacctgtcatctctcaagca 1152
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 64630971 acccccgacctctcctatctccacccctcctcccgaatcccacctgtcatctctcaagca 64631030
Query: 1153 tcatggtacccaccccagtggcgacagtggaccccagacccagacacttagatggagctc 1212
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 64631031 tcatggtacccaccccagtggcgacagtggaccccagacccagacacttagatggagctc 64631090
Query: 1213 tcctacggctggaaaatgataggggccgggcgtgaaggatattaggattatgaagacagt 1272
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 64631091 tcctacggctggaaaatgataggggccgggcgtgaaggatattaggattatgaagacagt 64631150
Query: 1273 ctcgatagcattaaactggaattgacccagcactgagcatccctgtctaacctgctttgc 1332
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 64631151 ctcgatagcattaaactggaattgacccagcactgagcatccctgtctaacctgctttgc 64631210
Query: 1333 tctttggtgcctcttttcgcaccccaccttggacttgaatgcgcctcagccatttccagt 1392
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 64631211 tctttggtgcctcttttcgcaccccaccttggacttgaatgcgcctcagccatttccagt 64631270
Query: 1393 tataggc 1399
|||||||
Sbjct: 64631271 tataggc 64631277
Score = 1045 bits (527), Expect = 0.0
Identities = 527/527 (100%)
Strand = Plus / Minus
Query: 873 actttcgtgtgatttccatagaagaggcaggaggtgggcaggctggggccagggatcgtg 932
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 64482654 actttcgtgtgatttccatagaagaggcaggaggtgggcaggctggggccagggatcgtg 64482595
Query: 933 gaccaccggtaacttcctgctcttcttctcttggggcagagattctgttttttgacattt 992
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 64482594 gaccaccggtaacttcctgctcttcttctcttggggcagagattctgttttttgacattt 64482535
Query: 993 gcacaagacaggtagggaaaggggagggaatgtttgaggactgctggtagtggaccattg 1052
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 64482534 gcacaagacaggtagggaaaggggagggaatgtttgaggactgctggtagtggaccattg 64482475
Query: 1053 ctggggaccaaaagagacctattgtgatgaaagccttgtgacccccgacctctcctatct 1112
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 64482474 ctggggaccaaaagagacctattgtgatgaaagccttgtgacccccgacctctcctatct 64482415
Query: 1113 ccacccctcctcccgaatcccacctgtcatctctcaagcatcatggtacccaccccagtg 1172
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 64482414 ccacccctcctcccgaatcccacctgtcatctctcaagcatcatggtacccaccccagtg 64482355
Query: 1173 gcgacagtggaccccagacccagacacttagatggagctctcctacggctggaaaatgat 1232
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 64482354 gcgacagtggaccccagacccagacacttagatggagctctcctacggctggaaaatgat 64482295
Query: 1233 aggggccgggcgtgaaggatattaggattatgaagacagtctcgatagcattaaactgga 1292
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 64482294 aggggccgggcgtgaaggatattaggattatgaagacagtctcgatagcattaaactgga 64482235
Query: 1293 attgacccagcactgagcatccctgtctaacctgctttgctctttggtgcctcttttcgc 1352
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 64482234 attgacccagcactgagcatccctgtctaacctgctttgctctttggtgcctcttttcgc 64482175
Query: 1353 accccaccttggacttgaatgcgcctcagccatttccagttataggc 1399
|||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 64482174 accccaccttggacttgaatgcgcctcagccatttccagttataggc 64482128
Score = 670 bits (338), Expect = 0.0
Identities = 338/338 (100%)
Strand = Plus / Plus
Query: 2 tttttgtgttcccagctgccgggaaaagccgccgggaattctttacctggccgtccccta 61
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 64512176 tttttgtgttcccagctgccgggaaaagccgccgggaattctttacctggccgtccccta 64512235
Query: 62 cctctagacgacccgaagccccttcggaaagctgtgcggggaggcgtagcgaccggggct 121
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 64512236 cctctagacgacccgaagccccttcggaaagctgtgcggggaggcgtagcgaccggggct 64512295
Query: 122 ggcctttcggaagcgggtctgaggcacattgcggtttggccgagggaatcaagacgggag 181
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 64512296 ggcctttcggaagcgggtctgaggcacattgcggtttggccgagggaatcaagacgggag 64512355
Query: 182 agacgcgtttgtccgcgagggaggcaggccccgtccggggatcttagaaaccctgcggtc 241
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 64512356 agacgcgtttgtccgcgagggaggcaggccccgtccggggatcttagaaaccctgcggtc 64512415
Query: 242 catcatgaagttccagtataaggaggaccatccctttgagtatcggaaaaaggaaggaga 301
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 64512416 catcatgaagttccagtataaggaggaccatccctttgagtatcggaaaaaggaaggaga 64512475
Query: 302 aaagatccggaagaaatatccggaccgggtccccgtga 339
||||||||||||||||||||||||||||||||||||||
Sbjct: 64512476 aaagatccggaagaaatatccggaccgggtccccgtga 64512513
Score = 670 bits (338), Expect = 0.0
Identities = 338/338 (100%)
Strand = Plus / Plus
Query: 2 tttttgtgttcccagctgccgggaaaagccgccgggaattctttacctggccgtccccta 61
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 64622283 tttttgtgttcccagctgccgggaaaagccgccgggaattctttacctggccgtccccta 64622342
Query: 62 cctctagacgacccgaagccccttcggaaagctgtgcggggaggcgtagcgaccggggct 121
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 64622343 cctctagacgacccgaagccccttcggaaagctgtgcggggaggcgtagcgaccggggct 64622402
Query: 122 ggcctttcggaagcgggtctgaggcacattgcggtttggccgagggaatcaagacgggag 181
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 64622403 ggcctttcggaagcgggtctgaggcacattgcggtttggccgagggaatcaagacgggag 64622462
Query: 182 agacgcgtttgtccgcgagggaggcaggccccgtccggggatcttagaaaccctgcggtc 241
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 64622463 agacgcgtttgtccgcgagggaggcaggccccgtccggggatcttagaaaccctgcggtc 64622522
Query: 242 catcatgaagttccagtataaggaggaccatccctttgagtatcggaaaaaggaaggaga 301
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 64622523 catcatgaagttccagtataaggaggaccatccctttgagtatcggaaaaaggaaggaga 64622582
Query: 302 aaagatccggaagaaatatccggaccgggtccccgtga 339
||||||||||||||||||||||||||||||||||||||
Sbjct: 64622583 aaagatccggaagaaatatccggaccgggtccccgtga 64622620
Score = 387 bits (195), Expect = e-104
Identities = 216/224 (96%), Gaps = 1/224 (0%)
Strand = Plus / Plus
Query: 673 tcccccgtggaggacgacagaggaaaaaacatctggaaacacgaccttgcacacaccatc 732
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 64520389 tcccccgtggaggacgacagaggaaaaaacatctggaaacacgaccttgcacacaccatc 64520448
Query: 733 accacatttccacacactcaactgatannnnnnngctgccttctcggcccagggagaaag 792
||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 64520449 accacatttccacacactcaactgatatttttttgctgccttctcggcccagggagaaag 64520508
Query: 793 cacgtcaggacagagctggcagattggctttggtagaaaaatgaggatgccctctaatct 852
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 64520509 cacgtcaggacagagctggcagattggctttggtagaaaaatgaggatgccctctaatct 64520568
Query: 853 cacaacactaccacgtattaactttcgtgtgatttccatagaag 896
||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 64520569 cacaacactaccacgtattaactttcgtg-gatttccatagaag 64520611
Score = 240 bits (121), Expect = 2e-60
Identities = 121/121 (100%)
Strand = Plus / Plus
Query: 414 gttggccagttctacttcttaatccggaagaggatccacctgagacctgaggacgcctta 473
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 64518710 gttggccagttctacttcttaatccggaagaggatccacctgagacctgaggacgcctta 64518769
Query: 474 ttcttctttgtcaacaacaccatccctcccactagcgcgaccatgggccagctgtatgag 533
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 64518770 ttcttctttgtcaacaacaccatccctcccactagcgcgaccatgggccagctgtatgag 64518829
Query: 534 g 534
|
Sbjct: 64518830 g 64518830
Score = 240 bits (121), Expect = 2e-60
Identities = 121/121 (100%)
Strand = Plus / Plus
Query: 414 gttggccagttctacttcttaatccggaagaggatccacctgagacctgaggacgcctta 473
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 64628868 gttggccagttctacttcttaatccggaagaggatccacctgagacctgaggacgcctta 64628927
Query: 474 ttcttctttgtcaacaacaccatccctcccactagcgcgaccatgggccagctgtatgag 533
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 64628928 ttcttctttgtcaacaacaccatccctcccactagcgcgaccatgggccagctgtatgag 64628987
Query: 534 g 534
|
Sbjct: 64628988 g 64628988
Score = 204 bits (103), Expect = 9e-50
Identities = 103/103 (100%)
Strand = Plus / Plus
Query: 532 aggacaaccacgaggaagactactttctgtacgtggcctacagcgacgagagtgtctacg 591
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 64520248 aggacaaccacgaggaagactactttctgtacgtggcctacagcgacgagagtgtctacg 64520307
Query: 592 gggagtgagtggtggaagccggcagatgggagctcctggactc 634
|||||||||||||||||||||||||||||||||||||||||||
Sbjct: 64520308 gggagtgagtggtggaagccggcagatgggagctcctggactc 64520350
Score = 204 bits (103), Expect = 9e-50
Identities = 103/103 (100%)
Strand = Plus / Plus
Query: 532 aggacaaccacgaggaagactactttctgtacgtggcctacagcgacgagagtgtctacg 591
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 64630410 aggacaaccacgaggaagactactttctgtacgtggcctacagcgacgagagtgtctacg 64630469
Query: 592 gggagtgagtggtggaagccggcagatgggagctcctggactc 634
|||||||||||||||||||||||||||||||||||||||||||
Sbjct: 64630470 gggagtgagtggtggaagccggcagatgggagctcctggactc 64630512
Score = 157 bits (79), Expect = 2e-35
Identities = 79/79 (100%)
Strand = Plus / Plus
Query: 336 gtgatcgtggagaaggctcctaaggccagggtacctgatctggacaagaggaagtacctc 395
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 64517551 gtgatcgtggagaaggctcctaaggccagggtacctgatctggacaagaggaagtacctc 64517610
Query: 396 gtgccctctgacctcactg 414
|||||||||||||||||||
Sbjct: 64517611 gtgccctctgacctcactg 64517629
Score = 157 bits (79), Expect = 2e-35
Identities = 79/79 (100%)
Strand = Plus / Plus
Query: 336 gtgatcgtggagaaggctcctaaggccagggtacctgatctggacaagaggaagtacctc 395
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 64627708 gtgatcgtggagaaggctcctaaggccagggtacctgatctggacaagaggaagtacctc 64627767
Query: 396 gtgccctctgacctcactg 414
|||||||||||||||||||
Sbjct: 64627768 gtgccctctgacctcactg 64627786
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 37,740,801
Number of extensions: 270
Number of successful extensions: 270
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 268
Number of HSP's successfully gapped: 11
Length of query: 1399
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1378
Effective length of database: 2,808,413,156
Effective search space: 3869993328968
Effective search space used: 3869993328968
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)