Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-004232
(966 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001073068.1| transmembrane protein 120A [Bos taurus]. 511 e-145
Alignment gi|NP_001095378.1| transmembrane protein 120B [Bos taurus]. 396 e-110
>ref|NP_001073068.1| transmembrane protein 120A [Bos taurus].
Length = 343
Score = 511 bits (1315), Expect = e-145
Identities = 253/297 (85%), Positives = 258/297 (86%)
Frame = +1
Query: 76 MNPPPPDPLGDCLRDWEELQQDFQGIQETHRLYRLKLEELIKLQNNCTSSITRQKKRLQE 255
M+PPPP PLGDCLRDWEELQQDF GIQETHRLYRLKLEEL KLQN+CTSSITRQKKRLQE
Sbjct: 1 MHPPPPGPLGDCLRDWEELQQDFHGIQETHRLYRLKLEELTKLQNSCTSSITRQKKRLQE 60
Query: 256 LALVLKKCKHXXXXXXXXXXXXXXXXIKERQGLFFDMEAYLPKKNGLYLSLVLGNVNVTL 435
LALVL+KCK IKERQGLFFDMEAYLPKKNGLYLSLVLGNVNVTL
Sbjct: 61 LALVLRKCKPSLPSEAEEAARELENQIKERQGLFFDMEAYLPKKNGLYLSLVLGNVNVTL 120
Query: 436 LSKQAKFAYKAEYEKFKLYLTIILILVSFTCRFLLNSRVTDAAFNFLLVWYYCTLTIRES 615
LSKQAKFAYK EYEKFKLYLTIILIL+SFTCRFLLNSRVTDAAFNFLLVWYYCTLTIRES
Sbjct: 121 LSKQAKFAYKDEYEKFKLYLTIILILISFTCRFLLNSRVTDAAFNFLLVWYYCTLTIRES 180
Query: 616 ILINNGSRIKGWWVFHHYVSTFLSGVMLTWPDGLMYQKFRNQFLSFSMYQSFVQFLQYYY 795
ILINNGSRIKGWWVFHHYVSTFLSGVMLTWPDGLMYQKFRNQFLSFSMYQSFVQFLQYYY
Sbjct: 181 ILINNGSRIKGWWVFHHYVSTFLSGVMLTWPDGLMYQKFRNQFLSFSMYQSFVQFLQYYY 240
Query: 796 QSGCLYRLRALGERHTMDLTVEGFQSWMWRXXXXXXXXXXXXXXXXXXNALTLFSLA 966
QSGCLYRLRALGERHTMDLTVEGFQSWMWR NALTLF+LA
Sbjct: 241 QSGCLYRLRALGERHTMDLTVEGFQSWMWRGLTFLLPFLFFGHFWQLFNALTLFNLA 297
>ref|NP_001095378.1| transmembrane protein 120B [Bos taurus].
Length = 339
Score = 396 bits (1018), Expect = e-110
Identities = 195/286 (68%), Positives = 223/286 (77%)
Frame = +1
Query: 109 CLRDWEELQQDFQGIQETHRLYRLKLEELIKLQNNCTSSITRQKKRLQELALVLKKCKHX 288
C R+W EL+ +FQ +QETHR+Y+ KLEEL LQ +C+SSI +QK RL++L L L++ K
Sbjct: 8 CEREWHELEGEFQELQETHRIYKQKLEELNALQTSCSSSINKQKTRLKDLKLTLQRYKRH 67
Query: 289 XXXXXXXXXXXXXXXIKERQGLFFDMEAYLPKKNGLYLSLVLGNVNVTLLSKQAKFAYKA 468
IKERQ +FFDMEAYLPKKNGLYL+LVLGNVNVTLLS QAKFAYK
Sbjct: 68 ASREEAELVQQMGANIKERQNVFFDMEAYLPKKNGLYLNLVLGNVNVTLLSNQAKFAYKD 127
Query: 469 EYEKFKLYLTIILILVSFTCRFLLNSRVTDAAFNFLLVWYYCTLTIRESILINNGSRIKG 648
EYEKFKLYLTIIL+L + CRF L+ RVTD FNFLLVWYYCTLTIRESILI+NGSRIKG
Sbjct: 128 EYEKFKLYLTIILLLGAVACRFFLHYRVTDEVFNFLLVWYYCTLTIRESILISNGSRIKG 187
Query: 649 WWVFHHYVSTFLSGVMLTWPDGLMYQKFRNQFLSFSMYQSFVQFLQYYYQSGCLYRLRAL 828
WWV HHYVSTFLSGVMLTWP+GL+YQKFRNQFL+FS++QS VQFLQYYYQ GCLYRLRAL
Sbjct: 188 WWVSHHYVSTFLSGVMLTWPNGLIYQKFRNQFLAFSIFQSCVQFLQYYYQRGCLYRLRAL 247
Query: 829 GERHTMDLTVEGFQSWMWRXXXXXXXXXXXXXXXXXXNALTLFSLA 966
GER+ +DLTVEGFQSWMWR NA+TLF L+
Sbjct: 248 GERNHLDLTVEGFQSWMWRGLTFLLPFLFCGHFWQLYNAVTLFELS 293
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 31,901,409
Number of extensions: 782528
Number of successful extensions: 3828
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 3818
Number of HSP's successfully gapped: 2
Length of query: 322
Length of database: 17,681,374
Length adjustment: 102
Effective length of query: 220
Effective length of database: 14,306,398
Effective search space: 3147407560
Effective search space used: 3147407560
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-004232
(966 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_536847.2| PREDICTED: similar to transmembrane protein ind... 460 e-130
Alignment gi|XP_543384.2| PREDICTED: similar to transmembrane protein ind... 392 e-109
>ref|XP_536847.2| PREDICTED: similar to transmembrane protein induced by tumor
necrosis factor alpha [Canis familiaris].
Length = 414
Score = 460 bits (1184), Expect = e-130
Identities = 231/272 (84%), Positives = 235/272 (86%)
Frame = +1
Query: 151 IQETHRLYRLKLEELIKLQNNCTSSITRQKKRLQELALVLKKCKHXXXXXXXXXXXXXXX 330
+QETHRLYRLKLEELIKLQN+CT SITRQKKRLQELALVLKKCK
Sbjct: 97 LQETHRLYRLKLEELIKLQNSCTGSITRQKKRLQELALVLKKCKPSLQSGAREAAQELEN 156
Query: 331 XIKERQGLFFDMEAYLPKKNGLYLSLVLGNVNVTLLSKQAKFAYKAEYEKFKLYLTIILI 510
IKERQGLFFDMEAYLPKKNGLYLSLVLGNVNVTLLSKQAKFAYK EYEKFKLYLTIILI
Sbjct: 157 QIKERQGLFFDMEAYLPKKNGLYLSLVLGNVNVTLLSKQAKFAYKDEYEKFKLYLTIILI 216
Query: 511 LVSFTCRFLLNSRVTDAAFNFLLVWYYCTLTIRESILINNGSRIKGWWVFHHYVSTFLSG 690
L+SFTCRFLLNSRVTDAAFNFLLVWYYCTLTIRESILINNGSRIKGWWVFHHYVSTFLSG
Sbjct: 217 LISFTCRFLLNSRVTDAAFNFLLVWYYCTLTIRESILINNGSRIKGWWVFHHYVSTFLSG 276
Query: 691 VMLTWPDGLMYQKFRNQFLSFSMYQSFVQFLQYYYQSGCLYRLRALGERHTMDLTVEGFQ 870
VMLTWPDGLMYQKFRNQFLSFSMYQSFVQFLQYYYQSGCLYRLRALGERHTMDLTVEGFQ
Sbjct: 277 VMLTWPDGLMYQKFRNQFLSFSMYQSFVQFLQYYYQSGCLYRLRALGERHTMDLTVEGFQ 336
Query: 871 SWMWRXXXXXXXXXXXXXXXXXXNALTLFSLA 966
SWMWR NALTLF+LA
Sbjct: 337 SWMWRGLTFLLPFLFFGHFWQLFNALTLFNLA 368
>ref|XP_543384.2| PREDICTED: similar to transmembrane protein induced by tumor
necrosis factor alpha [Canis familiaris].
Length = 439
Score = 392 bits (1008), Expect = e-109
Identities = 193/286 (67%), Positives = 221/286 (77%)
Frame = +1
Query: 109 CLRDWEELQQDFQGIQETHRLYRLKLEELIKLQNNCTSSITRQKKRLQELALVLKKCKHX 288
C R+W EL+ +FQ +QETHR+YR KLEEL LQ C+ SI +QK RL++L L++ K
Sbjct: 108 CEREWHELEGEFQELQETHRIYRQKLEELTSLQTLCSGSINKQKTRLKDLKHTLQRYKSH 167
Query: 289 XXXXXXXXXXXXXXXIKERQGLFFDMEAYLPKKNGLYLSLVLGNVNVTLLSKQAKFAYKA 468
IK+RQ +FFDMEAYLPKKNGLYL+LVLGNVNVTLLS QAKFAYK
Sbjct: 168 ASREEAELIQQMSANIKDRQNIFFDMEAYLPKKNGLYLNLVLGNVNVTLLSNQAKFAYKD 227
Query: 469 EYEKFKLYLTIILILVSFTCRFLLNSRVTDAAFNFLLVWYYCTLTIRESILINNGSRIKG 648
EYEKFKLYLTIIL+L + CRF+L+ RVTD FNFLLVWYYCTLTIRESILI+NGSRIKG
Sbjct: 228 EYEKFKLYLTIILLLGAVACRFVLHYRVTDEVFNFLLVWYYCTLTIRESILISNGSRIKG 287
Query: 649 WWVFHHYVSTFLSGVMLTWPDGLMYQKFRNQFLSFSMYQSFVQFLQYYYQSGCLYRLRAL 828
WWV HHYVSTFLSGVMLTWP+GL+YQKFRNQFL+FS++QS VQFLQYYYQ GCLYRLRAL
Sbjct: 288 WWVSHHYVSTFLSGVMLTWPNGLIYQKFRNQFLAFSIFQSCVQFLQYYYQRGCLYRLRAL 347
Query: 829 GERHTMDLTVEGFQSWMWRXXXXXXXXXXXXXXXXXXNALTLFSLA 966
GER+ +DLTVEGFQSWMWR NA+TLF L+
Sbjct: 348 GERNHLDLTVEGFQSWMWRGLTFLLPFLFCGHFWQLYNAITLFELS 393
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 33,407,909
Number of extensions: 813089
Number of successful extensions: 3793
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 3785
Number of HSP's successfully gapped: 2
Length of query: 322
Length of database: 18,874,504
Length adjustment: 103
Effective length of query: 219
Effective length of database: 15,440,896
Effective search space: 3381556224
Effective search space used: 3381556224
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-004232
(966 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_114131.1| transmembrane protein 120A [Homo sapiens]. 509 e-144
Alignment gi|NP_001074294.2| transmembrane protein 120B [Homo sapiens]. 398 e-111
>ref|NP_114131.1| transmembrane protein 120A [Homo sapiens].
Length = 343
Score = 509 bits (1311), Expect = e-144
Identities = 252/297 (84%), Positives = 256/297 (86%)
Frame = +1
Query: 76 MNPPPPDPLGDCLRDWEELQQDFQGIQETHRLYRLKLEELIKLQNNCTSSITRQKKRLQE 255
M PPPP PLGDCLRDWE+LQQDFQ IQETHRLYRLKLEEL KLQNNCTSSITRQKKRLQE
Sbjct: 1 MQPPPPGPLGDCLRDWEDLQQDFQNIQETHRLYRLKLEELTKLQNNCTSSITRQKKRLQE 60
Query: 256 LALVLKKCKHXXXXXXXXXXXXXXXXIKERQGLFFDMEAYLPKKNGLYLSLVLGNVNVTL 435
LAL LKKCK +KERQGLFFDMEAYLPKKNGLYLSLVLGNVNVTL
Sbjct: 61 LALALKKCKPSLPAEAEGAAQELENQMKERQGLFFDMEAYLPKKNGLYLSLVLGNVNVTL 120
Query: 436 LSKQAKFAYKAEYEKFKLYLTIILILVSFTCRFLLNSRVTDAAFNFLLVWYYCTLTIRES 615
LSKQAKFAYK EYEKFKLYLTIILIL+SFTCRFLLNSRVTDAAFNFLLVWYYCTLTIRES
Sbjct: 121 LSKQAKFAYKDEYEKFKLYLTIILILISFTCRFLLNSRVTDAAFNFLLVWYYCTLTIRES 180
Query: 616 ILINNGSRIKGWWVFHHYVSTFLSGVMLTWPDGLMYQKFRNQFLSFSMYQSFVQFLQYYY 795
ILINNGSRIKGWWVFHHYVSTFLSGVMLTWPDGLMYQKFRNQFLSFSMYQSFVQFLQYYY
Sbjct: 181 ILINNGSRIKGWWVFHHYVSTFLSGVMLTWPDGLMYQKFRNQFLSFSMYQSFVQFLQYYY 240
Query: 796 QSGCLYRLRALGERHTMDLTVEGFQSWMWRXXXXXXXXXXXXXXXXXXNALTLFSLA 966
QSGCLYRLRALGERHTMDLTVEGFQSWMWR NALTLF+LA
Sbjct: 241 QSGCLYRLRALGERHTMDLTVEGFQSWMWRGLTFLLPFLFFGHFWQLFNALTLFNLA 297
>ref|NP_001074294.2| transmembrane protein 120B [Homo sapiens].
Length = 339
Score = 398 bits (1022), Expect = e-111
Identities = 195/286 (68%), Positives = 224/286 (78%)
Frame = +1
Query: 109 CLRDWEELQQDFQGIQETHRLYRLKLEELIKLQNNCTSSITRQKKRLQELALVLKKCKHX 288
C R+W EL+ +FQ +QETHR+Y+ KLEEL LQ C+SSI++QKK L++L L L++CK
Sbjct: 8 CEREWHELEGEFQELQETHRIYKQKLEELAALQTLCSSSISKQKKHLKDLKLTLQRCKRH 67
Query: 289 XXXXXXXXXXXXXXXIKERQGLFFDMEAYLPKKNGLYLSLVLGNVNVTLLSKQAKFAYKA 468
IKERQ +FFDMEAYLPKKNGLYL+LVLGNVNVTLLS QAKFAYK
Sbjct: 68 ASREEAELVQQMAANIKERQDVFFDMEAYLPKKNGLYLNLVLGNVNVTLLSNQAKFAYKD 127
Query: 469 EYEKFKLYLTIILILVSFTCRFLLNSRVTDAAFNFLLVWYYCTLTIRESILINNGSRIKG 648
EYEKFKLYLTIIL+L + CRF+L+ RVTD FNFLLVWYYCTLTIRESILI+NGSRIKG
Sbjct: 128 EYEKFKLYLTIILLLGAVACRFVLHYRVTDEVFNFLLVWYYCTLTIRESILISNGSRIKG 187
Query: 649 WWVFHHYVSTFLSGVMLTWPDGLMYQKFRNQFLSFSMYQSFVQFLQYYYQSGCLYRLRAL 828
WWV HHYVSTFLSGVMLTWP+G +YQKFRNQFL+FS++QS VQFLQYYYQ GCLYRLRAL
Sbjct: 188 WWVSHHYVSTFLSGVMLTWPNGPIYQKFRNQFLAFSIFQSCVQFLQYYYQRGCLYRLRAL 247
Query: 829 GERHTMDLTVEGFQSWMWRXXXXXXXXXXXXXXXXXXNALTLFSLA 966
GER+ +DLTVEGFQSWMWR NA+TLF L+
Sbjct: 248 GERNHLDLTVEGFQSWMWRGLTFLLPFLFCGHFWQLYNAVTLFELS 293
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 32,621,993
Number of extensions: 786880
Number of successful extensions: 3463
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 3458
Number of HSP's successfully gapped: 2
Length of query: 322
Length of database: 18,297,164
Length adjustment: 103
Effective length of query: 219
Effective length of database: 14,901,872
Effective search space: 3263509968
Effective search space used: 3263509968
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-004232
(966 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_766129.1| transmembrane protein 120A [Mus musculus]. 504 e-143
Alignment gi|NP_001034812.1| transmembrane protein 120B [Mus musculus]. 390 e-109
>ref|NP_766129.1| transmembrane protein 120A [Mus musculus].
Length = 343
Score = 504 bits (1298), Expect = e-143
Identities = 249/297 (83%), Positives = 257/297 (86%)
Frame = +1
Query: 76 MNPPPPDPLGDCLRDWEELQQDFQGIQETHRLYRLKLEELIKLQNNCTSSITRQKKRLQE 255
M PPPDPLGDCLR+WE+LQQDFQGIQETHRLYRLKLEEL KLQ NCT+SITRQKKRLQE
Sbjct: 1 MQSPPPDPLGDCLRNWEDLQQDFQGIQETHRLYRLKLEELTKLQANCTNSITRQKKRLQE 60
Query: 256 LALVLKKCKHXXXXXXXXXXXXXXXXIKERQGLFFDMEAYLPKKNGLYLSLVLGNVNVTL 435
LALVLKKC+ +KERQGLFFDMEAYLPKKNGLYLSLVLGNVNVTL
Sbjct: 61 LALVLKKCRPSLPSESMEAAQELENQMKERQGLFFDMEAYLPKKNGLYLSLVLGNVNVTL 120
Query: 436 LSKQAKFAYKAEYEKFKLYLTIILILVSFTCRFLLNSRVTDAAFNFLLVWYYCTLTIRES 615
LSKQAKFAYK EYEKFKLYLTIILI++SFTCRFLLNSRVTDAAFNFLLVWYYCTLTIRES
Sbjct: 121 LSKQAKFAYKDEYEKFKLYLTIILIVISFTCRFLLNSRVTDAAFNFLLVWYYCTLTIRES 180
Query: 616 ILINNGSRIKGWWVFHHYVSTFLSGVMLTWPDGLMYQKFRNQFLSFSMYQSFVQFLQYYY 795
ILINNGSRIKGWWVFHHYVSTFLSGVMLTWPDGLMYQKFRNQFLSFSMYQSFVQFLQYYY
Sbjct: 181 ILINNGSRIKGWWVFHHYVSTFLSGVMLTWPDGLMYQKFRNQFLSFSMYQSFVQFLQYYY 240
Query: 796 QSGCLYRLRALGERHTMDLTVEGFQSWMWRXXXXXXXXXXXXXXXXXXNALTLFSLA 966
QSGCLYRLRALGERHTMDLTVEGFQSWMWR NALTLF+LA
Sbjct: 241 QSGCLYRLRALGERHTMDLTVEGFQSWMWRGLTFLLPFLFFGHFWQLFNALTLFNLA 297
>ref|NP_001034812.1| transmembrane protein 120B [Mus musculus].
Length = 339
Score = 390 bits (1002), Expect = e-109
Identities = 191/286 (66%), Positives = 223/286 (77%)
Frame = +1
Query: 109 CLRDWEELQQDFQGIQETHRLYRLKLEELIKLQNNCTSSITRQKKRLQELALVLKKCKHX 288
C R+W EL+ +FQ +QETHR+Y+ KLEEL LQ C++SI++QK+ L++L L++ K
Sbjct: 8 CEREWHELEGEFQELQETHRIYKQKLEELTSLQTLCSTSISKQKRHLKDLKHTLQRYKRH 67
Query: 289 XXXXXXXXXXXXXXXIKERQGLFFDMEAYLPKKNGLYLSLVLGNVNVTLLSKQAKFAYKA 468
IKERQ +FFDMEAYLPKKNGLYL+LVLGNV+VTLLS QAKFAYK
Sbjct: 68 SSHEEAALIQQMTANIKERQNVFFDMEAYLPKKNGLYLNLVLGNVSVTLLSNQAKFAYKD 127
Query: 469 EYEKFKLYLTIILILVSFTCRFLLNSRVTDAAFNFLLVWYYCTLTIRESILINNGSRIKG 648
EYEKFKLYLTIIL+L + CRF+L+ RVTD FNFLLVWYYCTLTIRESILI+NGSRIKG
Sbjct: 128 EYEKFKLYLTIILLLGAVACRFVLHYRVTDEVFNFLLVWYYCTLTIRESILISNGSRIKG 187
Query: 649 WWVFHHYVSTFLSGVMLTWPDGLMYQKFRNQFLSFSMYQSFVQFLQYYYQSGCLYRLRAL 828
WWV HHYVSTFLSGVMLTWP+GL+YQKFRNQFL+FS++QS VQFLQYYYQ GCLYRLRAL
Sbjct: 188 WWVSHHYVSTFLSGVMLTWPNGLIYQKFRNQFLAFSIFQSCVQFLQYYYQRGCLYRLRAL 247
Query: 829 GERHTMDLTVEGFQSWMWRXXXXXXXXXXXXXXXXXXNALTLFSLA 966
GER+ +DLTVEGFQSWMWR NA+TLF L+
Sbjct: 248 GERNHLDLTVEGFQSWMWRGLTFLLPFLFCGHFWQLYNAVTLFELS 293
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 27,428,526
Number of extensions: 653264
Number of successful extensions: 2854
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 2842
Number of HSP's successfully gapped: 2
Length of query: 322
Length of database: 15,617,559
Length adjustment: 101
Effective length of query: 221
Effective length of database: 12,583,923
Effective search space: 2781046983
Effective search space used: 2781046983
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-004232
(966 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_003361318.1| PREDICTED: transmembrane protein 120A-like [... 409 e-114
Alignment gi|XP_003132924.1| PREDICTED: transmembrane protein 120B-like [... 393 e-110
>ref|XP_003361318.1| PREDICTED: transmembrane protein 120A-like [Sus scrofa].
Length = 485
Score = 409 bits (1051), Expect = e-114
Identities = 211/266 (79%), Positives = 211/266 (79%)
Frame = +1
Query: 169 LYRLKLEELIKLQNNCTSSITRQKKRLQELALVLKKCKHXXXXXXXXXXXXXXXXIKERQ 348
LYRLKLEELIKLQNNCTSSITRQKKRLQELALVLKKCKH IKERQ
Sbjct: 106 LYRLKLEELIKLQNNCTSSITRQKKRLQELALVLKKCKHSLPSEAEEAAQELESQIKERQ 165
Query: 349 GLFFDMEAYLPKKNGLYLSLVLGNVNVTLLSKQAKFAYKAEYEKFKLYLTIILILVSFTC 528
GLFFDMEAYLPKKNGLYLSLVLGNVNVTLLSKQAK YKAEYEKFKLYLTIILILVSFTC
Sbjct: 166 GLFFDMEAYLPKKNGLYLSLVLGNVNVTLLSKQAKXXYKAEYEKFKLYLTIILILVSFTC 225
Query: 529 RFLLNSRVTDAAFNFLLVWYYCTLTIRESILINNGSRIKGWWVFHHYVSTFLSGVMLTWP 708
RFLLNSR VWYYCTLTIRESILINNGSRIKGWWVFHHYVSTFLSGVMLTWP
Sbjct: 226 RFLLNSRWASCRAGLXXVWYYCTLTIRESILINNGSRIKGWWVFHHYVSTFLSGVMLTWP 285
Query: 709 DGLMYQKFRNQFLSFSMYQSFVQFLQYYYQSGCLYRLRALGERHTMDLTVEGFQSWMWRX 888
DGLMYQKFRNQFLSFSMYQSFVQFL YRLRALGERHTMDLTVEGFQSWMWR
Sbjct: 286 DGLMYQKFRNQFLSFSMYQSFVQFLXXXXXXXXXYRLRALGERHTMDLTVEGFQSWMWRG 345
Query: 889 XXXXXXXXXXXXXXXXXNALTLFSLA 966
NALTLFSLA
Sbjct: 346 LTFLLPFLFFGQFWQLFNALTLFSLA 371
Score = 62.8 bits (151), Expect = 3e-10
Identities = 25/27 (92%), Positives = 26/27 (96%)
Frame = +1
Query: 76 MNPPPPDPLGDCLRDWEELQQDFQGIQ 156
MNPPPPDPLGDCLRDWEE QQD+QGIQ
Sbjct: 1 MNPPPPDPLGDCLRDWEEXQQDYQGIQ 27
>ref|XP_003132924.1| PREDICTED: transmembrane protein 120B-like [Sus scrofa].
Length = 339
Score = 393 bits (1010), Expect = e-110
Identities = 194/286 (67%), Positives = 222/286 (77%)
Frame = +1
Query: 109 CLRDWEELQQDFQGIQETHRLYRLKLEELIKLQNNCTSSITRQKKRLQELALVLKKCKHX 288
C R+W EL+ +FQ +QETHR+Y+ KLEEL Q C+SSI +QK RL++L L++ K
Sbjct: 8 CEREWHELEGEFQELQETHRIYKQKLEELTAFQTLCSSSINKQKTRLKDLKHTLQRYKRH 67
Query: 289 XXXXXXXXXXXXXXXIKERQGLFFDMEAYLPKKNGLYLSLVLGNVNVTLLSKQAKFAYKA 468
IKERQ +FFDMEAYLPKKNGLYL+LVLGNVNVTLLSKQAKFAYK
Sbjct: 68 ASQEEAELVQQLGANIKERQNVFFDMEAYLPKKNGLYLNLVLGNVNVTLLSKQAKFAYKD 127
Query: 469 EYEKFKLYLTIILILVSFTCRFLLNSRVTDAAFNFLLVWYYCTLTIRESILINNGSRIKG 648
EYEKFKLYLTIIL+L + CRF+L+ RVTD FNFLLVWYYCTLTIRESILI+NGSRIKG
Sbjct: 128 EYEKFKLYLTIILLLGAVACRFVLHYRVTDEIFNFLLVWYYCTLTIRESILISNGSRIKG 187
Query: 649 WWVFHHYVSTFLSGVMLTWPDGLMYQKFRNQFLSFSMYQSFVQFLQYYYQSGCLYRLRAL 828
WWV HHYVSTFLSGVMLTWP+GL+YQKFRNQFL+FS++QS VQFLQYYYQ GCLYRLRAL
Sbjct: 188 WWVSHHYVSTFLSGVMLTWPNGLIYQKFRNQFLAFSIFQSCVQFLQYYYQRGCLYRLRAL 247
Query: 829 GERHTMDLTVEGFQSWMWRXXXXXXXXXXXXXXXXXXNALTLFSLA 966
GER+ +DLTVEGFQSWMWR NA+TLF L+
Sbjct: 248 GERNHLDLTVEGFQSWMWRGLTFLLPFLFCGHFWQLYNAVTLFELS 293
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 20,610,380
Number of extensions: 505066
Number of successful extensions: 2474
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 2467
Number of HSP's successfully gapped: 3
Length of query: 322
Length of database: 11,343,932
Length adjustment: 99
Effective length of query: 223
Effective length of database: 8,879,129
Effective search space: 1980045767
Effective search space used: 1980045767
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 33 (17.3 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-004232
(966 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|GL894019.2| Sus scrofa unplaced genomic scaffold ChrUScaf1904 242 3e-61
Sscrofa_Chr14 80 3e-12
>gb|GL894019.2| Sus scrofa unplaced genomic scaffold ChrUScaf1904
Length = 181737
Score = 242 bits (122), Expect = 3e-61
Identities = 127/129 (98%)
Strand = Plus / Minus
Query: 29 ggtgctgtcctcgagtctgggctcaccaggcccacagcctggtagcaatgaatcccccgc 88
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61981 ggtgctgtcctcgagtctgggctcaccaggcccacagcctggtagcaatgaatcccccgc 61922
Query: 89 ctccagaccccctgggcgactgtctgcgggactgggaggagctgcagcaggacttccaag 148
|||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||
Sbjct: 61921 ctccagaccccctgggcgactgtctgcgggactgggaggagcngcagcaggactaccaag 61862
Query: 149 gcatccagg 157
|||||||||
Sbjct: 61861 gcatccagg 61853
Score = 236 bits (119), Expect = 2e-59
Identities = 119/119 (100%)
Strand = Plus / Minus
Query: 276 atgcaaacactcccttccatccgaggctgaggaggctgcgcaggagctggaaagccaaat 335
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 59788 atgcaaacactcccttccatccgaggctgaggaggctgcgcaggagctggaaagccaaat 59729
Query: 336 caaggagcgacaaggccttttctttgatatggaggcctacttacccaagaagaatgggt 394
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 59728 caaggagcgacaaggccttttctttgatatggaggcctacttacccaagaagaatgggt 59670
Score = 216 bits (109), Expect = 2e-53
Identities = 109/109 (100%)
Strand = Plus / Minus
Query: 167 gactgtaccgcctgaagctggaagagctgatcaagctgcagaacaactgtaccagctcca 226
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 60123 gactgtaccgcctgaagctggaagagctgatcaagctgcagaacaactgtaccagctcca 60064
Query: 227 tcacccggcagaagaagcggctccaggagctggcccttgtcctgaagaa 275
|||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 60063 tcacccggcagaagaagcggctccaggagctggcccttgtcctgaagaa 60015
Score = 178 bits (90), Expect = 4e-42
Identities = 90/90 (100%)
Strand = Plus / Minus
Query: 460 tacaaggccgagtacgagaagttcaagctctacctcaccatcatcctcatcctcgtctcc 519
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 57039 tacaaggccgagtacgagaagttcaagctctacctcaccatcatcctcatcctcgtctcc 56980
Query: 520 ttcacctgccgcttcctcctcaactccagg 549
||||||||||||||||||||||||||||||
Sbjct: 56979 ttcacctgccgcttcctcctcaactccagg 56950
Score = 135 bits (68), Expect = 5e-29
Identities = 68/68 (100%)
Strand = Plus / Minus
Query: 638 ggatcaaaggctggtgggttttccaccattacgtgtccacgttcctgtcgggagtcatgc 697
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 56613 ggatcaaaggctggtgggttttccaccattacgtgtccacgttcctgtcgggagtcatgc 56554
Query: 698 tgacatgg 705
||||||||
Sbjct: 56553 tgacatgg 56546
Score = 131 bits (66), Expect = 8e-28
Identities = 66/66 (100%)
Strand = Plus / Minus
Query: 859 gagggcttccagtcctggatgtggcggggcctcaccttcctgctgcccttcctcttcttt 918
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 55920 gagggcttccagtcctggatgtggcggggcctcaccttcctgctgcccttcctcttcttt 55861
Query: 919 ggacag 924
||||||
Sbjct: 55860 ggacag 55855
Score = 127 bits (64), Expect = 1e-26
Identities = 64/64 (100%)
Strand = Plus / Minus
Query: 704 ggcccgacggcctcatgtaccagaagttccggaaccagttcctgtccttctccatgtacc 763
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 56461 ggcccgacggcctcatgtaccagaagttccggaaccagttcctgtccttctccatgtacc 56402
Query: 764 agag 767
||||
Sbjct: 56401 agag 56398
Score = 119 bits (60), Expect = 3e-24
Identities = 60/60 (100%)
Strand = Plus / Minus
Query: 580 gtctggtattactgcaccctgaccatccgcgagagcatcctcatcaacaacggctcccgg 639
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 56787 gtctggtattactgcaccctgaccatccgcgagagcatcctcatcaacaacggctcccgg 56728
Score = 119 bits (60), Expect = 3e-24
Identities = 60/60 (100%)
Strand = Plus / Minus
Query: 395 tgtacctgagcctggttctgggcaacgtcaacgtgacactcctgagcaagcaggctaagt 454
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 57398 tgtacctgagcctggttctgggcaacgtcaacgtgacactcctgagcaagcaggctaagt 57339
Score = 101 bits (51), Expect = 7e-19
Identities = 51/51 (100%)
Strand = Plus / Minus
Query: 809 tgtaccgcctgcgggccctgggcgagaggcacaccatggacctgaccgtgg 859
|||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 56097 tgtaccgcctgcgggccctgggcgagaggcacaccatggacctgaccgtgg 56047
Score = 87.7 bits (44), Expect = 1e-14
Identities = 44/44 (100%)
Strand = Plus / Minus
Query: 923 agttctggcagctttttaacgcactgacgttgttcagcctggcc 966
||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 55758 agttctggcagctttttaacgcactgacgttgttcagcctggcc 55715
>Sscrofa_Chr14
|| Length = 153851969
Score = 79.8 bits (40), Expect = 3e-12
Identities = 49/52 (94%)
Strand = Plus / Minus
Query: 865 ttccagtcctggatgtggcggggcctcaccttcctgctgcccttcctcttct 916
|||||||||||||||||||| |||||||||||||| ||||||||||| ||||
Sbjct: 32715907 ttccagtcctggatgtggcgaggcctcaccttccttctgcccttcctgttct 32715856
Score = 71.9 bits (36), Expect = 6e-10
Identities = 60/68 (88%)
Strand = Plus / Minus
Query: 568 aacttcctgctggtctggtattactgcaccctgaccatccgcgagagcatcctcatcaac 627
|||||||||||||| |||||||||||||||||||| || || ||||| || || |||| |
Sbjct: 32727310 aacttcctgctggtgtggtattactgcaccctgacgattcgagagagtattcttatcagc 32727251
Query: 628 aacggctc 635
||||||||
Sbjct: 32727250 aacggctc 32727243
Score = 67.9 bits (34), Expect = 1e-08
Identities = 46/50 (92%)
Strand = Plus / Minus
Query: 457 gcctacaaggccgagtacgagaagttcaagctctacctcaccatcatcct 506
|||||||||| |||||| |||||||||||||||||||| || ||||||||
Sbjct: 32735153 gcctacaaggacgagtatgagaagttcaagctctacctgactatcatcct 32735104
Score = 60.0 bits (30), Expect = 2e-06
Identities = 54/62 (87%)
Strand = Plus / Minus
Query: 640 atcaaaggctggtgggttttccaccattacgtgtccacgttcctgtcgggagtcatgctg 699
||||||||||||||||| | || || ||||||||||| |||||||| ||||| ||||||
Sbjct: 32719716 atcaaaggctggtgggtgtctcatcactacgtgtccacattcctgtctggagtgatgctg 32719657
Query: 700 ac 701
||
Sbjct: 32719656 ac 32719655
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 25,525,385
Number of extensions: 158
Number of successful extensions: 158
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 158
Number of HSP's successfully gapped: 15
Length of query: 966
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 945
Effective length of database: 2,808,413,156
Effective search space: 2653950432420
Effective search space used: 2653950432420
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 29 (58.0 bits)