Animal-Genome cDNA 20110601C-004232


Search to RefSeqBP_Rel49

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-004232
         (966 letters)

Database: RefSeq49_BP.fasta 
           33,088 sequences; 17,681,374 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|NP_001073068.1| transmembrane protein 120A [Bos taurus].          511   e-145
Alignment   gi|NP_001095378.1| transmembrane protein 120B [Bos taurus].          396   e-110

>ref|NP_001073068.1| transmembrane protein 120A [Bos taurus].
          Length = 343

 Score =  511 bits (1315), Expect = e-145
 Identities = 253/297 (85%), Positives = 258/297 (86%)
 Frame = +1

Query: 76  MNPPPPDPLGDCLRDWEELQQDFQGIQETHRLYRLKLEELIKLQNNCTSSITRQKKRLQE 255
           M+PPPP PLGDCLRDWEELQQDF GIQETHRLYRLKLEEL KLQN+CTSSITRQKKRLQE
Sbjct: 1   MHPPPPGPLGDCLRDWEELQQDFHGIQETHRLYRLKLEELTKLQNSCTSSITRQKKRLQE 60

Query: 256 LALVLKKCKHXXXXXXXXXXXXXXXXIKERQGLFFDMEAYLPKKNGLYLSLVLGNVNVTL 435
           LALVL+KCK                 IKERQGLFFDMEAYLPKKNGLYLSLVLGNVNVTL
Sbjct: 61  LALVLRKCKPSLPSEAEEAARELENQIKERQGLFFDMEAYLPKKNGLYLSLVLGNVNVTL 120

Query: 436 LSKQAKFAYKAEYEKFKLYLTIILILVSFTCRFLLNSRVTDAAFNFLLVWYYCTLTIRES 615
           LSKQAKFAYK EYEKFKLYLTIILIL+SFTCRFLLNSRVTDAAFNFLLVWYYCTLTIRES
Sbjct: 121 LSKQAKFAYKDEYEKFKLYLTIILILISFTCRFLLNSRVTDAAFNFLLVWYYCTLTIRES 180

Query: 616 ILINNGSRIKGWWVFHHYVSTFLSGVMLTWPDGLMYQKFRNQFLSFSMYQSFVQFLQYYY 795
           ILINNGSRIKGWWVFHHYVSTFLSGVMLTWPDGLMYQKFRNQFLSFSMYQSFVQFLQYYY
Sbjct: 181 ILINNGSRIKGWWVFHHYVSTFLSGVMLTWPDGLMYQKFRNQFLSFSMYQSFVQFLQYYY 240

Query: 796 QSGCLYRLRALGERHTMDLTVEGFQSWMWRXXXXXXXXXXXXXXXXXXNALTLFSLA 966
           QSGCLYRLRALGERHTMDLTVEGFQSWMWR                  NALTLF+LA
Sbjct: 241 QSGCLYRLRALGERHTMDLTVEGFQSWMWRGLTFLLPFLFFGHFWQLFNALTLFNLA 297


>ref|NP_001095378.1| transmembrane protein 120B [Bos taurus].
          Length = 339

 Score =  396 bits (1018), Expect = e-110
 Identities = 195/286 (68%), Positives = 223/286 (77%)
 Frame = +1

Query: 109 CLRDWEELQQDFQGIQETHRLYRLKLEELIKLQNNCTSSITRQKKRLQELALVLKKCKHX 288
           C R+W EL+ +FQ +QETHR+Y+ KLEEL  LQ +C+SSI +QK RL++L L L++ K  
Sbjct: 8   CEREWHELEGEFQELQETHRIYKQKLEELNALQTSCSSSINKQKTRLKDLKLTLQRYKRH 67

Query: 289 XXXXXXXXXXXXXXXIKERQGLFFDMEAYLPKKNGLYLSLVLGNVNVTLLSKQAKFAYKA 468
                          IKERQ +FFDMEAYLPKKNGLYL+LVLGNVNVTLLS QAKFAYK 
Sbjct: 68  ASREEAELVQQMGANIKERQNVFFDMEAYLPKKNGLYLNLVLGNVNVTLLSNQAKFAYKD 127

Query: 469 EYEKFKLYLTIILILVSFTCRFLLNSRVTDAAFNFLLVWYYCTLTIRESILINNGSRIKG 648
           EYEKFKLYLTIIL+L +  CRF L+ RVTD  FNFLLVWYYCTLTIRESILI+NGSRIKG
Sbjct: 128 EYEKFKLYLTIILLLGAVACRFFLHYRVTDEVFNFLLVWYYCTLTIRESILISNGSRIKG 187

Query: 649 WWVFHHYVSTFLSGVMLTWPDGLMYQKFRNQFLSFSMYQSFVQFLQYYYQSGCLYRLRAL 828
           WWV HHYVSTFLSGVMLTWP+GL+YQKFRNQFL+FS++QS VQFLQYYYQ GCLYRLRAL
Sbjct: 188 WWVSHHYVSTFLSGVMLTWPNGLIYQKFRNQFLAFSIFQSCVQFLQYYYQRGCLYRLRAL 247

Query: 829 GERHTMDLTVEGFQSWMWRXXXXXXXXXXXXXXXXXXNALTLFSLA 966
           GER+ +DLTVEGFQSWMWR                  NA+TLF L+
Sbjct: 248 GERNHLDLTVEGFQSWMWRGLTFLLPFLFCGHFWQLYNAVTLFELS 293


  Database: RefSeq49_BP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 17,681,374
  Number of sequences in database:  33,088
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 31,901,409
Number of extensions: 782528
Number of successful extensions: 3828
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 3818
Number of HSP's successfully gapped: 2
Length of query: 322
Length of database: 17,681,374
Length adjustment: 102
Effective length of query: 220
Effective length of database: 14,306,398
Effective search space: 3147407560
Effective search space used: 3147407560
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)

Search to RefSeqCP_Rel49

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-004232
         (966 letters)

Database: RefSeq49_CP.fasta 
           33,336 sequences; 18,874,504 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|XP_536847.2| PREDICTED: similar to transmembrane protein ind...   460   e-130
Alignment   gi|XP_543384.2| PREDICTED: similar to transmembrane protein ind...   392   e-109

>ref|XP_536847.2| PREDICTED: similar to transmembrane protein induced by tumor
           necrosis factor alpha [Canis familiaris].
          Length = 414

 Score =  460 bits (1184), Expect = e-130
 Identities = 231/272 (84%), Positives = 235/272 (86%)
 Frame = +1

Query: 151 IQETHRLYRLKLEELIKLQNNCTSSITRQKKRLQELALVLKKCKHXXXXXXXXXXXXXXX 330
           +QETHRLYRLKLEELIKLQN+CT SITRQKKRLQELALVLKKCK                
Sbjct: 97  LQETHRLYRLKLEELIKLQNSCTGSITRQKKRLQELALVLKKCKPSLQSGAREAAQELEN 156

Query: 331 XIKERQGLFFDMEAYLPKKNGLYLSLVLGNVNVTLLSKQAKFAYKAEYEKFKLYLTIILI 510
            IKERQGLFFDMEAYLPKKNGLYLSLVLGNVNVTLLSKQAKFAYK EYEKFKLYLTIILI
Sbjct: 157 QIKERQGLFFDMEAYLPKKNGLYLSLVLGNVNVTLLSKQAKFAYKDEYEKFKLYLTIILI 216

Query: 511 LVSFTCRFLLNSRVTDAAFNFLLVWYYCTLTIRESILINNGSRIKGWWVFHHYVSTFLSG 690
           L+SFTCRFLLNSRVTDAAFNFLLVWYYCTLTIRESILINNGSRIKGWWVFHHYVSTFLSG
Sbjct: 217 LISFTCRFLLNSRVTDAAFNFLLVWYYCTLTIRESILINNGSRIKGWWVFHHYVSTFLSG 276

Query: 691 VMLTWPDGLMYQKFRNQFLSFSMYQSFVQFLQYYYQSGCLYRLRALGERHTMDLTVEGFQ 870
           VMLTWPDGLMYQKFRNQFLSFSMYQSFVQFLQYYYQSGCLYRLRALGERHTMDLTVEGFQ
Sbjct: 277 VMLTWPDGLMYQKFRNQFLSFSMYQSFVQFLQYYYQSGCLYRLRALGERHTMDLTVEGFQ 336

Query: 871 SWMWRXXXXXXXXXXXXXXXXXXNALTLFSLA 966
           SWMWR                  NALTLF+LA
Sbjct: 337 SWMWRGLTFLLPFLFFGHFWQLFNALTLFNLA 368


>ref|XP_543384.2| PREDICTED: similar to transmembrane protein induced by tumor
           necrosis factor alpha [Canis familiaris].
          Length = 439

 Score =  392 bits (1008), Expect = e-109
 Identities = 193/286 (67%), Positives = 221/286 (77%)
 Frame = +1

Query: 109 CLRDWEELQQDFQGIQETHRLYRLKLEELIKLQNNCTSSITRQKKRLQELALVLKKCKHX 288
           C R+W EL+ +FQ +QETHR+YR KLEEL  LQ  C+ SI +QK RL++L   L++ K  
Sbjct: 108 CEREWHELEGEFQELQETHRIYRQKLEELTSLQTLCSGSINKQKTRLKDLKHTLQRYKSH 167

Query: 289 XXXXXXXXXXXXXXXIKERQGLFFDMEAYLPKKNGLYLSLVLGNVNVTLLSKQAKFAYKA 468
                          IK+RQ +FFDMEAYLPKKNGLYL+LVLGNVNVTLLS QAKFAYK 
Sbjct: 168 ASREEAELIQQMSANIKDRQNIFFDMEAYLPKKNGLYLNLVLGNVNVTLLSNQAKFAYKD 227

Query: 469 EYEKFKLYLTIILILVSFTCRFLLNSRVTDAAFNFLLVWYYCTLTIRESILINNGSRIKG 648
           EYEKFKLYLTIIL+L +  CRF+L+ RVTD  FNFLLVWYYCTLTIRESILI+NGSRIKG
Sbjct: 228 EYEKFKLYLTIILLLGAVACRFVLHYRVTDEVFNFLLVWYYCTLTIRESILISNGSRIKG 287

Query: 649 WWVFHHYVSTFLSGVMLTWPDGLMYQKFRNQFLSFSMYQSFVQFLQYYYQSGCLYRLRAL 828
           WWV HHYVSTFLSGVMLTWP+GL+YQKFRNQFL+FS++QS VQFLQYYYQ GCLYRLRAL
Sbjct: 288 WWVSHHYVSTFLSGVMLTWPNGLIYQKFRNQFLAFSIFQSCVQFLQYYYQRGCLYRLRAL 347

Query: 829 GERHTMDLTVEGFQSWMWRXXXXXXXXXXXXXXXXXXNALTLFSLA 966
           GER+ +DLTVEGFQSWMWR                  NA+TLF L+
Sbjct: 348 GERNHLDLTVEGFQSWMWRGLTFLLPFLFCGHFWQLYNAITLFELS 393


  Database: RefSeq49_CP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 18,874,504
  Number of sequences in database:  33,336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 33,407,909
Number of extensions: 813089
Number of successful extensions: 3793
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 3785
Number of HSP's successfully gapped: 2
Length of query: 322
Length of database: 18,874,504
Length adjustment: 103
Effective length of query: 219
Effective length of database: 15,440,896
Effective search space: 3381556224
Effective search space used: 3381556224
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)

Search to RefSeqHP_Rel49

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-004232
         (966 letters)

Database: RefSeq49_HP.fasta 
           32,964 sequences; 18,297,164 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|NP_114131.1| transmembrane protein 120A [Homo sapiens].           509   e-144
Alignment   gi|NP_001074294.2| transmembrane protein 120B [Homo sapiens].        398   e-111

>ref|NP_114131.1| transmembrane protein 120A [Homo sapiens].
          Length = 343

 Score =  509 bits (1311), Expect = e-144
 Identities = 252/297 (84%), Positives = 256/297 (86%)
 Frame = +1

Query: 76  MNPPPPDPLGDCLRDWEELQQDFQGIQETHRLYRLKLEELIKLQNNCTSSITRQKKRLQE 255
           M PPPP PLGDCLRDWE+LQQDFQ IQETHRLYRLKLEEL KLQNNCTSSITRQKKRLQE
Sbjct: 1   MQPPPPGPLGDCLRDWEDLQQDFQNIQETHRLYRLKLEELTKLQNNCTSSITRQKKRLQE 60

Query: 256 LALVLKKCKHXXXXXXXXXXXXXXXXIKERQGLFFDMEAYLPKKNGLYLSLVLGNVNVTL 435
           LAL LKKCK                 +KERQGLFFDMEAYLPKKNGLYLSLVLGNVNVTL
Sbjct: 61  LALALKKCKPSLPAEAEGAAQELENQMKERQGLFFDMEAYLPKKNGLYLSLVLGNVNVTL 120

Query: 436 LSKQAKFAYKAEYEKFKLYLTIILILVSFTCRFLLNSRVTDAAFNFLLVWYYCTLTIRES 615
           LSKQAKFAYK EYEKFKLYLTIILIL+SFTCRFLLNSRVTDAAFNFLLVWYYCTLTIRES
Sbjct: 121 LSKQAKFAYKDEYEKFKLYLTIILILISFTCRFLLNSRVTDAAFNFLLVWYYCTLTIRES 180

Query: 616 ILINNGSRIKGWWVFHHYVSTFLSGVMLTWPDGLMYQKFRNQFLSFSMYQSFVQFLQYYY 795
           ILINNGSRIKGWWVFHHYVSTFLSGVMLTWPDGLMYQKFRNQFLSFSMYQSFVQFLQYYY
Sbjct: 181 ILINNGSRIKGWWVFHHYVSTFLSGVMLTWPDGLMYQKFRNQFLSFSMYQSFVQFLQYYY 240

Query: 796 QSGCLYRLRALGERHTMDLTVEGFQSWMWRXXXXXXXXXXXXXXXXXXNALTLFSLA 966
           QSGCLYRLRALGERHTMDLTVEGFQSWMWR                  NALTLF+LA
Sbjct: 241 QSGCLYRLRALGERHTMDLTVEGFQSWMWRGLTFLLPFLFFGHFWQLFNALTLFNLA 297


>ref|NP_001074294.2| transmembrane protein 120B [Homo sapiens].
          Length = 339

 Score =  398 bits (1022), Expect = e-111
 Identities = 195/286 (68%), Positives = 224/286 (78%)
 Frame = +1

Query: 109 CLRDWEELQQDFQGIQETHRLYRLKLEELIKLQNNCTSSITRQKKRLQELALVLKKCKHX 288
           C R+W EL+ +FQ +QETHR+Y+ KLEEL  LQ  C+SSI++QKK L++L L L++CK  
Sbjct: 8   CEREWHELEGEFQELQETHRIYKQKLEELAALQTLCSSSISKQKKHLKDLKLTLQRCKRH 67

Query: 289 XXXXXXXXXXXXXXXIKERQGLFFDMEAYLPKKNGLYLSLVLGNVNVTLLSKQAKFAYKA 468
                          IKERQ +FFDMEAYLPKKNGLYL+LVLGNVNVTLLS QAKFAYK 
Sbjct: 68  ASREEAELVQQMAANIKERQDVFFDMEAYLPKKNGLYLNLVLGNVNVTLLSNQAKFAYKD 127

Query: 469 EYEKFKLYLTIILILVSFTCRFLLNSRVTDAAFNFLLVWYYCTLTIRESILINNGSRIKG 648
           EYEKFKLYLTIIL+L +  CRF+L+ RVTD  FNFLLVWYYCTLTIRESILI+NGSRIKG
Sbjct: 128 EYEKFKLYLTIILLLGAVACRFVLHYRVTDEVFNFLLVWYYCTLTIRESILISNGSRIKG 187

Query: 649 WWVFHHYVSTFLSGVMLTWPDGLMYQKFRNQFLSFSMYQSFVQFLQYYYQSGCLYRLRAL 828
           WWV HHYVSTFLSGVMLTWP+G +YQKFRNQFL+FS++QS VQFLQYYYQ GCLYRLRAL
Sbjct: 188 WWVSHHYVSTFLSGVMLTWPNGPIYQKFRNQFLAFSIFQSCVQFLQYYYQRGCLYRLRAL 247

Query: 829 GERHTMDLTVEGFQSWMWRXXXXXXXXXXXXXXXXXXNALTLFSLA 966
           GER+ +DLTVEGFQSWMWR                  NA+TLF L+
Sbjct: 248 GERNHLDLTVEGFQSWMWRGLTFLLPFLFCGHFWQLYNAVTLFELS 293


  Database: RefSeq49_HP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 18,297,164
  Number of sequences in database:  32,964
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 32,621,993
Number of extensions: 786880
Number of successful extensions: 3463
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 3458
Number of HSP's successfully gapped: 2
Length of query: 322
Length of database: 18,297,164
Length adjustment: 103
Effective length of query: 219
Effective length of database: 14,901,872
Effective search space: 3263509968
Effective search space used: 3263509968
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)

Search to RefSeqMP_Rel49

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-004232
         (966 letters)

Database: RefSeq49_MP.fasta 
           30,036 sequences; 15,617,559 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|NP_766129.1| transmembrane protein 120A [Mus musculus].           504   e-143
Alignment   gi|NP_001034812.1| transmembrane protein 120B [Mus musculus].        390   e-109

>ref|NP_766129.1| transmembrane protein 120A [Mus musculus].
          Length = 343

 Score =  504 bits (1298), Expect = e-143
 Identities = 249/297 (83%), Positives = 257/297 (86%)
 Frame = +1

Query: 76  MNPPPPDPLGDCLRDWEELQQDFQGIQETHRLYRLKLEELIKLQNNCTSSITRQKKRLQE 255
           M  PPPDPLGDCLR+WE+LQQDFQGIQETHRLYRLKLEEL KLQ NCT+SITRQKKRLQE
Sbjct: 1   MQSPPPDPLGDCLRNWEDLQQDFQGIQETHRLYRLKLEELTKLQANCTNSITRQKKRLQE 60

Query: 256 LALVLKKCKHXXXXXXXXXXXXXXXXIKERQGLFFDMEAYLPKKNGLYLSLVLGNVNVTL 435
           LALVLKKC+                 +KERQGLFFDMEAYLPKKNGLYLSLVLGNVNVTL
Sbjct: 61  LALVLKKCRPSLPSESMEAAQELENQMKERQGLFFDMEAYLPKKNGLYLSLVLGNVNVTL 120

Query: 436 LSKQAKFAYKAEYEKFKLYLTIILILVSFTCRFLLNSRVTDAAFNFLLVWYYCTLTIRES 615
           LSKQAKFAYK EYEKFKLYLTIILI++SFTCRFLLNSRVTDAAFNFLLVWYYCTLTIRES
Sbjct: 121 LSKQAKFAYKDEYEKFKLYLTIILIVISFTCRFLLNSRVTDAAFNFLLVWYYCTLTIRES 180

Query: 616 ILINNGSRIKGWWVFHHYVSTFLSGVMLTWPDGLMYQKFRNQFLSFSMYQSFVQFLQYYY 795
           ILINNGSRIKGWWVFHHYVSTFLSGVMLTWPDGLMYQKFRNQFLSFSMYQSFVQFLQYYY
Sbjct: 181 ILINNGSRIKGWWVFHHYVSTFLSGVMLTWPDGLMYQKFRNQFLSFSMYQSFVQFLQYYY 240

Query: 796 QSGCLYRLRALGERHTMDLTVEGFQSWMWRXXXXXXXXXXXXXXXXXXNALTLFSLA 966
           QSGCLYRLRALGERHTMDLTVEGFQSWMWR                  NALTLF+LA
Sbjct: 241 QSGCLYRLRALGERHTMDLTVEGFQSWMWRGLTFLLPFLFFGHFWQLFNALTLFNLA 297


>ref|NP_001034812.1| transmembrane protein 120B [Mus musculus].
          Length = 339

 Score =  390 bits (1002), Expect = e-109
 Identities = 191/286 (66%), Positives = 223/286 (77%)
 Frame = +1

Query: 109 CLRDWEELQQDFQGIQETHRLYRLKLEELIKLQNNCTSSITRQKKRLQELALVLKKCKHX 288
           C R+W EL+ +FQ +QETHR+Y+ KLEEL  LQ  C++SI++QK+ L++L   L++ K  
Sbjct: 8   CEREWHELEGEFQELQETHRIYKQKLEELTSLQTLCSTSISKQKRHLKDLKHTLQRYKRH 67

Query: 289 XXXXXXXXXXXXXXXIKERQGLFFDMEAYLPKKNGLYLSLVLGNVNVTLLSKQAKFAYKA 468
                          IKERQ +FFDMEAYLPKKNGLYL+LVLGNV+VTLLS QAKFAYK 
Sbjct: 68  SSHEEAALIQQMTANIKERQNVFFDMEAYLPKKNGLYLNLVLGNVSVTLLSNQAKFAYKD 127

Query: 469 EYEKFKLYLTIILILVSFTCRFLLNSRVTDAAFNFLLVWYYCTLTIRESILINNGSRIKG 648
           EYEKFKLYLTIIL+L +  CRF+L+ RVTD  FNFLLVWYYCTLTIRESILI+NGSRIKG
Sbjct: 128 EYEKFKLYLTIILLLGAVACRFVLHYRVTDEVFNFLLVWYYCTLTIRESILISNGSRIKG 187

Query: 649 WWVFHHYVSTFLSGVMLTWPDGLMYQKFRNQFLSFSMYQSFVQFLQYYYQSGCLYRLRAL 828
           WWV HHYVSTFLSGVMLTWP+GL+YQKFRNQFL+FS++QS VQFLQYYYQ GCLYRLRAL
Sbjct: 188 WWVSHHYVSTFLSGVMLTWPNGLIYQKFRNQFLAFSIFQSCVQFLQYYYQRGCLYRLRAL 247

Query: 829 GERHTMDLTVEGFQSWMWRXXXXXXXXXXXXXXXXXXNALTLFSLA 966
           GER+ +DLTVEGFQSWMWR                  NA+TLF L+
Sbjct: 248 GERNHLDLTVEGFQSWMWRGLTFLLPFLFCGHFWQLYNAVTLFELS 293


  Database: RefSeq49_MP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 15,617,559
  Number of sequences in database:  30,036
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 27,428,526
Number of extensions: 653264
Number of successful extensions: 2854
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 2842
Number of HSP's successfully gapped: 2
Length of query: 322
Length of database: 15,617,559
Length adjustment: 101
Effective length of query: 221
Effective length of database: 12,583,923
Effective search space: 2781046983
Effective search space used: 2781046983
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)

Search to RefSeqSP_Rel49

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-004232
         (966 letters)

Database: RefSeq49_SP.fasta 
           24,897 sequences; 11,343,932 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|XP_003361318.1| PREDICTED: transmembrane protein 120A-like [...   409   e-114
Alignment   gi|XP_003132924.1| PREDICTED: transmembrane protein 120B-like [...   393   e-110

>ref|XP_003361318.1| PREDICTED: transmembrane protein 120A-like [Sus scrofa].
          Length = 485

 Score =  409 bits (1051), Expect = e-114
 Identities = 211/266 (79%), Positives = 211/266 (79%)
 Frame = +1

Query: 169 LYRLKLEELIKLQNNCTSSITRQKKRLQELALVLKKCKHXXXXXXXXXXXXXXXXIKERQ 348
           LYRLKLEELIKLQNNCTSSITRQKKRLQELALVLKKCKH                IKERQ
Sbjct: 106 LYRLKLEELIKLQNNCTSSITRQKKRLQELALVLKKCKHSLPSEAEEAAQELESQIKERQ 165

Query: 349 GLFFDMEAYLPKKNGLYLSLVLGNVNVTLLSKQAKFAYKAEYEKFKLYLTIILILVSFTC 528
           GLFFDMEAYLPKKNGLYLSLVLGNVNVTLLSKQAK  YKAEYEKFKLYLTIILILVSFTC
Sbjct: 166 GLFFDMEAYLPKKNGLYLSLVLGNVNVTLLSKQAKXXYKAEYEKFKLYLTIILILVSFTC 225

Query: 529 RFLLNSRVTDAAFNFLLVWYYCTLTIRESILINNGSRIKGWWVFHHYVSTFLSGVMLTWP 708
           RFLLNSR          VWYYCTLTIRESILINNGSRIKGWWVFHHYVSTFLSGVMLTWP
Sbjct: 226 RFLLNSRWASCRAGLXXVWYYCTLTIRESILINNGSRIKGWWVFHHYVSTFLSGVMLTWP 285

Query: 709 DGLMYQKFRNQFLSFSMYQSFVQFLQYYYQSGCLYRLRALGERHTMDLTVEGFQSWMWRX 888
           DGLMYQKFRNQFLSFSMYQSFVQFL         YRLRALGERHTMDLTVEGFQSWMWR 
Sbjct: 286 DGLMYQKFRNQFLSFSMYQSFVQFLXXXXXXXXXYRLRALGERHTMDLTVEGFQSWMWRG 345

Query: 889 XXXXXXXXXXXXXXXXXNALTLFSLA 966
                            NALTLFSLA
Sbjct: 346 LTFLLPFLFFGQFWQLFNALTLFSLA 371



 Score = 62.8 bits (151), Expect = 3e-10
 Identities = 25/27 (92%), Positives = 26/27 (96%)
 Frame = +1

Query: 76  MNPPPPDPLGDCLRDWEELQQDFQGIQ 156
           MNPPPPDPLGDCLRDWEE QQD+QGIQ
Sbjct: 1   MNPPPPDPLGDCLRDWEEXQQDYQGIQ 27


>ref|XP_003132924.1| PREDICTED: transmembrane protein 120B-like [Sus scrofa].
          Length = 339

 Score =  393 bits (1010), Expect = e-110
 Identities = 194/286 (67%), Positives = 222/286 (77%)
 Frame = +1

Query: 109 CLRDWEELQQDFQGIQETHRLYRLKLEELIKLQNNCTSSITRQKKRLQELALVLKKCKHX 288
           C R+W EL+ +FQ +QETHR+Y+ KLEEL   Q  C+SSI +QK RL++L   L++ K  
Sbjct: 8   CEREWHELEGEFQELQETHRIYKQKLEELTAFQTLCSSSINKQKTRLKDLKHTLQRYKRH 67

Query: 289 XXXXXXXXXXXXXXXIKERQGLFFDMEAYLPKKNGLYLSLVLGNVNVTLLSKQAKFAYKA 468
                          IKERQ +FFDMEAYLPKKNGLYL+LVLGNVNVTLLSKQAKFAYK 
Sbjct: 68  ASQEEAELVQQLGANIKERQNVFFDMEAYLPKKNGLYLNLVLGNVNVTLLSKQAKFAYKD 127

Query: 469 EYEKFKLYLTIILILVSFTCRFLLNSRVTDAAFNFLLVWYYCTLTIRESILINNGSRIKG 648
           EYEKFKLYLTIIL+L +  CRF+L+ RVTD  FNFLLVWYYCTLTIRESILI+NGSRIKG
Sbjct: 128 EYEKFKLYLTIILLLGAVACRFVLHYRVTDEIFNFLLVWYYCTLTIRESILISNGSRIKG 187

Query: 649 WWVFHHYVSTFLSGVMLTWPDGLMYQKFRNQFLSFSMYQSFVQFLQYYYQSGCLYRLRAL 828
           WWV HHYVSTFLSGVMLTWP+GL+YQKFRNQFL+FS++QS VQFLQYYYQ GCLYRLRAL
Sbjct: 188 WWVSHHYVSTFLSGVMLTWPNGLIYQKFRNQFLAFSIFQSCVQFLQYYYQRGCLYRLRAL 247

Query: 829 GERHTMDLTVEGFQSWMWRXXXXXXXXXXXXXXXXXXNALTLFSLA 966
           GER+ +DLTVEGFQSWMWR                  NA+TLF L+
Sbjct: 248 GERNHLDLTVEGFQSWMWRGLTFLLPFLFCGHFWQLYNAVTLFELS 293


  Database: RefSeq49_SP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 11,343,932
  Number of sequences in database:  24,897
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 20,610,380
Number of extensions: 505066
Number of successful extensions: 2474
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 2467
Number of HSP's successfully gapped: 3
Length of query: 322
Length of database: 11,343,932
Length adjustment: 99
Effective length of query: 223
Effective length of database: 8,879,129
Effective search space: 1980045767
Effective search space used: 1980045767
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 33 (17.3 bits)

Search to Sscrofa10_2

BLASTN 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-004232
         (966 letters)

Database: Sscrofa_10.2.fasta 
           4582 sequences; 2,808,509,378 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|GL894019.2| Sus scrofa unplaced genomic scaffold ChrUScaf1904      242   3e-61
Sscrofa_Chr14                                                          80   3e-12

>gb|GL894019.2| Sus scrofa unplaced genomic scaffold ChrUScaf1904
          Length = 181737

 Score =  242 bits (122), Expect = 3e-61
 Identities = 127/129 (98%)
 Strand = Plus / Minus

                                                                         
Query: 29    ggtgctgtcctcgagtctgggctcaccaggcccacagcctggtagcaatgaatcccccgc 88
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61981 ggtgctgtcctcgagtctgggctcaccaggcccacagcctggtagcaatgaatcccccgc 61922

                                                                         
Query: 89    ctccagaccccctgggcgactgtctgcgggactgggaggagctgcagcaggacttccaag 148
             |||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||
Sbjct: 61921 ctccagaccccctgggcgactgtctgcgggactgggaggagcngcagcaggactaccaag 61862

                      
Query: 149   gcatccagg 157
             |||||||||
Sbjct: 61861 gcatccagg 61853



 Score =  236 bits (119), Expect = 2e-59
 Identities = 119/119 (100%)
 Strand = Plus / Minus

                                                                         
Query: 276   atgcaaacactcccttccatccgaggctgaggaggctgcgcaggagctggaaagccaaat 335
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 59788 atgcaaacactcccttccatccgaggctgaggaggctgcgcaggagctggaaagccaaat 59729

                                                                        
Query: 336   caaggagcgacaaggccttttctttgatatggaggcctacttacccaagaagaatgggt 394
             |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 59728 caaggagcgacaaggccttttctttgatatggaggcctacttacccaagaagaatgggt 59670



 Score =  216 bits (109), Expect = 2e-53
 Identities = 109/109 (100%)
 Strand = Plus / Minus

                                                                         
Query: 167   gactgtaccgcctgaagctggaagagctgatcaagctgcagaacaactgtaccagctcca 226
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 60123 gactgtaccgcctgaagctggaagagctgatcaagctgcagaacaactgtaccagctcca 60064

                                                              
Query: 227   tcacccggcagaagaagcggctccaggagctggcccttgtcctgaagaa 275
             |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 60063 tcacccggcagaagaagcggctccaggagctggcccttgtcctgaagaa 60015



 Score =  178 bits (90), Expect = 4e-42
 Identities = 90/90 (100%)
 Strand = Plus / Minus

                                                                         
Query: 460   tacaaggccgagtacgagaagttcaagctctacctcaccatcatcctcatcctcgtctcc 519
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 57039 tacaaggccgagtacgagaagttcaagctctacctcaccatcatcctcatcctcgtctcc 56980

                                           
Query: 520   ttcacctgccgcttcctcctcaactccagg 549
             ||||||||||||||||||||||||||||||
Sbjct: 56979 ttcacctgccgcttcctcctcaactccagg 56950



 Score =  135 bits (68), Expect = 5e-29
 Identities = 68/68 (100%)
 Strand = Plus / Minus

                                                                         
Query: 638   ggatcaaaggctggtgggttttccaccattacgtgtccacgttcctgtcgggagtcatgc 697
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 56613 ggatcaaaggctggtgggttttccaccattacgtgtccacgttcctgtcgggagtcatgc 56554

                     
Query: 698   tgacatgg 705
             ||||||||
Sbjct: 56553 tgacatgg 56546



 Score =  131 bits (66), Expect = 8e-28
 Identities = 66/66 (100%)
 Strand = Plus / Minus

                                                                         
Query: 859   gagggcttccagtcctggatgtggcggggcctcaccttcctgctgcccttcctcttcttt 918
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 55920 gagggcttccagtcctggatgtggcggggcctcaccttcctgctgcccttcctcttcttt 55861

                   
Query: 919   ggacag 924
             ||||||
Sbjct: 55860 ggacag 55855



 Score =  127 bits (64), Expect = 1e-26
 Identities = 64/64 (100%)
 Strand = Plus / Minus

                                                                         
Query: 704   ggcccgacggcctcatgtaccagaagttccggaaccagttcctgtccttctccatgtacc 763
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 56461 ggcccgacggcctcatgtaccagaagttccggaaccagttcctgtccttctccatgtacc 56402

                 
Query: 764   agag 767
             ||||
Sbjct: 56401 agag 56398



 Score =  119 bits (60), Expect = 3e-24
 Identities = 60/60 (100%)
 Strand = Plus / Minus

                                                                         
Query: 580   gtctggtattactgcaccctgaccatccgcgagagcatcctcatcaacaacggctcccgg 639
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 56787 gtctggtattactgcaccctgaccatccgcgagagcatcctcatcaacaacggctcccgg 56728



 Score =  119 bits (60), Expect = 3e-24
 Identities = 60/60 (100%)
 Strand = Plus / Minus

                                                                         
Query: 395   tgtacctgagcctggttctgggcaacgtcaacgtgacactcctgagcaagcaggctaagt 454
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 57398 tgtacctgagcctggttctgggcaacgtcaacgtgacactcctgagcaagcaggctaagt 57339



 Score =  101 bits (51), Expect = 7e-19
 Identities = 51/51 (100%)
 Strand = Plus / Minus

                                                                
Query: 809   tgtaccgcctgcgggccctgggcgagaggcacaccatggacctgaccgtgg 859
             |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 56097 tgtaccgcctgcgggccctgggcgagaggcacaccatggacctgaccgtgg 56047



 Score = 87.7 bits (44), Expect = 1e-14
 Identities = 44/44 (100%)
 Strand = Plus / Minus

                                                         
Query: 923   agttctggcagctttttaacgcactgacgttgttcagcctggcc 966
             ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 55758 agttctggcagctttttaacgcactgacgttgttcagcctggcc 55715


>Sscrofa_Chr14 
||          Length = 153851969

 Score = 79.8 bits (40), Expect = 3e-12
 Identities = 49/52 (94%)
 Strand = Plus / Minus

                                                                    
Query: 865      ttccagtcctggatgtggcggggcctcaccttcctgctgcccttcctcttct 916
                |||||||||||||||||||| |||||||||||||| ||||||||||| ||||
Sbjct: 32715907 ttccagtcctggatgtggcgaggcctcaccttccttctgcccttcctgttct 32715856



 Score = 71.9 bits (36), Expect = 6e-10
 Identities = 60/68 (88%)
 Strand = Plus / Minus

                                                                            
Query: 568      aacttcctgctggtctggtattactgcaccctgaccatccgcgagagcatcctcatcaac 627
                |||||||||||||| |||||||||||||||||||| || || ||||| || || |||| |
Sbjct: 32727310 aacttcctgctggtgtggtattactgcaccctgacgattcgagagagtattcttatcagc 32727251

                        
Query: 628      aacggctc 635
                ||||||||
Sbjct: 32727250 aacggctc 32727243



 Score = 67.9 bits (34), Expect = 1e-08
 Identities = 46/50 (92%)
 Strand = Plus / Minus

                                                                  
Query: 457      gcctacaaggccgagtacgagaagttcaagctctacctcaccatcatcct 506
                |||||||||| |||||| |||||||||||||||||||| || ||||||||
Sbjct: 32735153 gcctacaaggacgagtatgagaagttcaagctctacctgactatcatcct 32735104



 Score = 60.0 bits (30), Expect = 2e-06
 Identities = 54/62 (87%)
 Strand = Plus / Minus

                                                                            
Query: 640      atcaaaggctggtgggttttccaccattacgtgtccacgttcctgtcgggagtcatgctg 699
                ||||||||||||||||| |  || || ||||||||||| |||||||| ||||| ||||||
Sbjct: 32719716 atcaaaggctggtgggtgtctcatcactacgtgtccacattcctgtctggagtgatgctg 32719657

                  
Query: 700      ac 701
                ||
Sbjct: 32719656 ac 32719655


  Database: Sscrofa_10.2.fasta
    Posted date:  Nov 16, 2011 10:34 AM
  Number of letters in database: 2,808,509,378
  Number of sequences in database:  4582
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 25,525,385
Number of extensions: 158
Number of successful extensions: 158
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 158
Number of HSP's successfully gapped: 15
Length of query: 966
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 945
Effective length of database: 2,808,413,156
Effective search space: 2653950432420
Effective search space used: 2653950432420
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 29 (58.0 bits)