Animal-Genome cDNA 20110601C-004236

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-004236
         (955 letters)

Database: RefSeq49_BP.fasta 
           33,088 sequences; 17,681,374 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|NP_001077214.1| general transcription factor II-I repeat dom...   421   e-118
Alignment   gi|NP_001095647.1| general transcription factor II-I [Bos tauru...   357   1e-98
Alignment   gi|NP_001178397.1| general transcription factor II-I repeat dom...   143   2e-34
Alignment   gi|XP_002698228.1| PREDICTED: GTF2I repeat domain containing 1 ...   143   2e-34
Alignment   gi|XP_002698227.1| PREDICTED: GTF2I repeat domain containing 1 ...   143   2e-34
Alignment   gi|XP_886895.3| PREDICTED: GTF2I repeat domain containing 1 iso...   143   2e-34

>ref|NP_001077214.1| general transcription factor II-I repeat domain-containing protein
           2 [Bos taurus].
          Length = 950

 Score =  421 bits (1081), Expect = e-118
 Identities = 212/257 (82%), Positives = 225/257 (87%), Gaps = 2/257 (0%)
 Frame = +3

Query: 180 MAQVAMSTLPVENEESSDSRMVVTFLVSALESMCKELAKSKAEVACIAMYEADVFVVGTE 359
           MAQVA+ST P+ +EESS+SRMVVTFLVSALESMCKELAKSKAEVACIAMYEADVFV+GTE
Sbjct: 1   MAQVAVSTPPIAHEESSESRMVVTFLVSALESMCKELAKSKAEVACIAMYEADVFVIGTE 60

Query: 360 KGRAFVNARTDLQKDFAKYCVAEGLPEVKPPHPVNG--MQIDSGETEILRKAVEDYFCFC 533
           KGRAFVNARTDLQKDFAKYCVAEGL EVKPP P N   MQ+DSGETEILRKAVEDYFCFC
Sbjct: 61  KGRAFVNARTDLQKDFAKYCVAEGLQEVKPPGPANASRMQVDSGETEILRKAVEDYFCFC 120

Query: 534 YGKALGTTAMVPVPYEKLLKDQAAVVVQGLPEGVPFQHPENYDLATLKWILENKAGISFT 713
           YGKALGT AMVPVPYEK+L DQ A+VVQGLPEGVPFQHPENYDLATLKWILENKAGISF 
Sbjct: 121 YGKALGTAAMVPVPYEKMLTDQEAIVVQGLPEGVPFQHPENYDLATLKWILENKAGISFL 180

Query: 714 INRPFLXXXXXXXXXXXXTDAVRSVTSPSESCVPINVKTEPMEDSGISLKAAAVSVKKES 893
           INRPF             TD  +SVTSPSESC PI VKTEPMEDSGISLKA  VSVKKES
Sbjct: 181 INRPFPGPANQPGGPGVVTDTDKSVTSPSESCTPIRVKTEPMEDSGISLKAEVVSVKKES 240

Query: 894 EDPNYYQHNMQDSHHSS 944
           EDPNYY+++MQ+S HSS
Sbjct: 241 EDPNYYEYSMQESRHSS 257



 Score = 55.8 bits (133), Expect = 5e-08
 Identities = 28/76 (36%), Positives = 45/76 (59%)
 Frame = +3

Query: 498 LRKAVEDYFCFCYGKALGTTAMVPVPYEKLLKDQAAVVVQGLPEGVPFQHPENYDLATLK 677
           LR+ V D F   +G+A+G    V VPY K+  +   VV+ G+P GV F+ P   ++++++
Sbjct: 333 LREQVNDLFSRKFGEAIGVDFPVKVPYRKITFNPGCVVIDGMPPGVVFKAPGYLEISSMR 392

Query: 678 WILENKAGISFTINRP 725
            IL+    I FT+ RP
Sbjct: 393 RILDAADLIKFTVIRP 408


>ref|NP_001095647.1| general transcription factor II-I [Bos taurus].
          Length = 978

 Score =  357 bits (915), Expect = 1e-98
 Identities = 187/283 (66%), Positives = 212/283 (74%), Gaps = 25/283 (8%)
 Frame = +3

Query: 180 MAQVAMSTLPVENEESSDSRMVVTFLVSALESMCKELAKSKAEVACIAMYEADVFVVGTE 359
           MAQVA+STLPVE+EESS+SRMVVTFL+SALESMCKELAKSKAEVACIA+YE DVFVVGTE
Sbjct: 1   MAQVAVSTLPVEDEESSESRMVVTFLMSALESMCKELAKSKAEVACIAVYETDVFVVGTE 60

Query: 360 KGRAFVNARTDLQKDFAKYCVAEG-----LPEVKPPHPVNGMQIDSGETEILRKAVEDYF 524
           +GRAFVN R D QKDF KYCV E      + ++K     N M +D+ E E LRK VEDYF
Sbjct: 61  RGRAFVNTRKDFQKDFVKYCVEEEEKAAEMHKMKSTAQANRMSVDAVEIETLRKTVEDYF 120

Query: 525 CFCYGKALGTTAMVPVPYEKLLKDQAAVVVQGLPEGVPFQHPENYDLATLKWILENKAGI 704
           CFCYGKALG + +VPVPYEK+L+DQ+AVVVQGLPEGV F+HPENYDLATLKWILENKAGI
Sbjct: 121 CFCYGKALGKSTVVPVPYEKMLRDQSAVVVQGLPEGVAFKHPENYDLATLKWILENKAGI 180

Query: 705 SFTINRPFLXXXXXXXXXXXXTDAVRSVTSPSESCVPINVKTEPMEDSGISLKAAAVSVK 884
           SF I RPFL            TDA RS+ SPS SC P+ VKTEP EDSGISL+ AAV+VK
Sbjct: 181 SFIIKRPFLEPKKHLGGRVMVTDAERSMISPSGSCGPVKVKTEPSEDSGISLEMAAVTVK 240

Query: 885 KESEDPNYYQHN--------------------MQDSHHSSGSN 953
           +ESEDP+YYQ+N                    +Q SHHSS  N
Sbjct: 241 EESEDPDYYQYNIQAGPSETDDVDDKLPLSKSLQGSHHSSEGN 283



 Score = 60.8 bits (146), Expect = 2e-09
 Identities = 30/77 (38%), Positives = 47/77 (61%)
 Frame = +3

Query: 498  LRKAVEDYFCFCYGKALGTTAMVPVPYEKLLKDQAAVVVQGLPEGVPFQHPENYDLATLK 677
            LR+ V D F   +G+A+G    V VPY K+  +   VVV G+P GV F+ P   ++++++
Sbjct: 848  LREQVNDLFSRKFGEAIGMGFPVKVPYRKITINPGCVVVDGMPPGVSFKAPSYLEISSMR 907

Query: 678  WILENKAGISFTINRPF 728
             IL++   I FT+ RPF
Sbjct: 908  RILDSAEFIKFTVIRPF 924



 Score = 59.3 bits (142), Expect = 5e-09
 Identities = 31/78 (39%), Positives = 44/78 (56%)
 Frame = +3

Query: 498 LRKAVEDYFCFCYGKALGTTAMVPVPYEKLLKDQAAVVVQGLPEGVPFQHPENYDLATLK 677
           LRK V+  FC  + +ALG+T    VPY+K       + V+GLPE +PF+ P  Y +  L+
Sbjct: 445 LRKMVDQLFCKKFAEALGSTEAKAVPYQKFEAHPNDLYVEGLPENIPFRSPSWYGIPRLE 504

Query: 678 WILENKAGISFTINRPFL 731
            I++    I F I RP L
Sbjct: 505 KIIQVGNRIKFVIKRPEL 522



 Score = 56.6 bits (135), Expect = 3e-08
 Identities = 29/78 (37%), Positives = 43/78 (55%)
 Frame = +3

Query: 498 LRKAVEDYFCFCYGKALGTTAMVPVPYEKLLKDQAAVVVQGLPEGVPFQHPENYDLATLK 677
           LRK VE+ F   + +ALG T  V VPY     +   + V+GLPEG+PF+ P  + +  L+
Sbjct: 550 LRKQVEEIFNLKFAQALGLTEAVKVPYPVFESNPEFLYVEGLPEGIPFRSPTWFGIPRLE 609

Query: 678 WILENKAGISFTINRPFL 731
            I+     I F + +P L
Sbjct: 610 RIVRGSNKIKFVVKKPEL 627



 Score = 56.6 bits (135), Expect = 3e-08
 Identities = 31/76 (40%), Positives = 42/76 (55%)
 Frame = +3

Query: 498 LRKAVEDYFCFCYGKALGTTAMVPVPYEKLLKDQAAVVVQGLPEGVPFQHPENYDLATLK 677
           L++ VE+ F    G+ALG    V VP+           V+GLPEGVPF+ P  + +  L+
Sbjct: 712 LKQKVENLFNEKCGEALGLKQAVKVPFALFESFPEDFYVEGLPEGVPFRRPSTFGIPRLE 771

Query: 678 WILENKAGISFTINRP 725
            IL NKA I F I +P
Sbjct: 772 KILRNKAKIKFIIKKP 787



 Score = 52.8 bits (125), Expect = 4e-07
 Identities = 55/210 (26%), Positives = 82/210 (39%), Gaps = 16/210 (7%)
 Frame = +3

Query: 141 PAGRC-------PPAGTSGIMAQVAMSTLPVENEESSDSRMVVTFLVSALESMCKELAKS 299
           P+G C        P+  SGI  ++A  T+  E+E+    +  +    S  + +  +L  S
Sbjct: 211 PSGSCGPVKVKTEPSEDSGISLEMAAVTVKEESEDPDYYQYNIQAGPSETDDVDDKLPLS 270

Query: 300 KAEVACIAMYEADVFVVGTEKGRAFVNARTDLQKDFAKYCVAEGLPEVKPPHPVNGMQID 479
           K+        E      G E     V A  D     AK   +   P+     P N  +  
Sbjct: 271 KSLQGSHHSSE------GNEGTEMEVPAEDDDYPPPAKRPKSSEPPQPPVTEPANAGKRK 324

Query: 480 SGETEI---------LRKAVEDYFCFCYGKALGTTAMVPVPYEKLLKDQAAVVVQGLPEG 632
             E            LRK VE+ F   Y +A+     V +PY         + V+GLPEG
Sbjct: 325 VREFNFEKWNARITDLRKQVEELFERKYAQAIKAKGPVTIPYPLFQSHVEDLYVEGLPEG 384

Query: 633 VPFQHPENYDLATLKWILENKAGISFTINR 722
           +PF+ P  Y +  L+ IL  K  I F I +
Sbjct: 385 IPFRRPSTYGIPRLERILLAKERIRFVIKK 414


>ref|NP_001178397.1| general transcription factor II-I repeat domain-containing protein
           1 [Bos taurus].
          Length = 960

 Score =  143 bits (361), Expect = 2e-34
 Identities = 75/174 (43%), Positives = 105/174 (60%), Gaps = 13/174 (7%)
 Frame = +3

Query: 243 VVTFLVSALESMCKELAKSKAEVACIAMYEADVFVVGTEKGRAFVNARTDLQKDFAKYCV 422
           ++T LVSAL+SMC  L+K  AEVAC+A+++   FVVGTEKGR F+NAR +LQ DF ++C 
Sbjct: 30  IITSLVSALDSMCSALSKLNAEVACVAVHDESAFVVGTEKGRMFLNARKELQSDFLRFCR 89

Query: 423 AEGLPEVKPPHPVNGMQIDSG-------------ETEILRKAVEDYFCFCYGKALGTTAM 563
                E +  HP    + + G             +  +LRK VE+ F   Y +ALG  ++
Sbjct: 90  GAPWKEPEAEHPKKVPRGEGGGRNVPRSALEHGSDVYLLRKMVEEVFDVLYSEALGRASV 149

Query: 564 VPVPYEKLLKDQAAVVVQGLPEGVPFQHPENYDLATLKWILENKAGISFTINRP 725
           VP+PYE+LL++   + VQGLPEG+ F+ P  YD   L  ILE+   I F + RP
Sbjct: 150 VPLPYERLLREPGLLAVQGLPEGLAFRRPAEYDPKALMAILEHSHRIRFKLKRP 203



 Score = 65.5 bits (158), Expect = 7e-11
 Identities = 34/84 (40%), Positives = 48/84 (57%)
 Frame = +3

Query: 477 DSGETEILRKAVEDYFCFCYGKALGTTAMVPVPYEKLLKDQAAVVVQGLPEGVPFQHPEN 656
           ++ +   LR+ V+  F   Y +ALG   MVPVPY K+  D  AV + G+P+ +PF+ P  
Sbjct: 344 ETEDINTLRECVQILFNSRYAEALGLDHMVPVPYRKIACDPEAVEIVGIPDKIPFKRPCT 403

Query: 657 YDLATLKWILENKAGISFTINRPF 728
           Y +  LK ILE +  I F I R F
Sbjct: 404 YGVPKLKRILEERHSIHFVIKRMF 427



 Score = 63.9 bits (154), Expect = 2e-10
 Identities = 34/86 (39%), Positives = 51/86 (59%)
 Frame = +3

Query: 471 QIDSGETEILRKAVEDYFCFCYGKALGTTAMVPVPYEKLLKDQAAVVVQGLPEGVPFQHP 650
           +ID   T  LR+ V+D F   YG+ALG    V VPY+++  +  +V+++GLP G+PF+ P
Sbjct: 698 RIDIANT--LREQVQDLFNKKYGEALGIKYPVQVPYKRIKSNPGSVIIEGLPPGIPFRKP 755

Query: 651 ENYDLATLKWILENKAGISFTINRPF 728
             +    L+ IL     I FT+ RPF
Sbjct: 756 CTFGSQNLERILAVADKIKFTVTRPF 781



 Score = 60.8 bits (146), Expect = 2e-09
 Identities = 53/162 (32%), Positives = 71/162 (43%), Gaps = 4/162 (2%)
 Frame = +3

Query: 435 PEVKPPHPVNGMQIDSGETEILRKAVEDYFCFCYGKALGTTAMVPVPYEKLLKDQAAVVV 614
           PE +P    +G  I       LRK VE  F   Y KA+G +  V VPY K L     + V
Sbjct: 549 PEERPVEDSHGDVIRP-----LRKQVELLFNTRYAKAIGISEPVKVPYSKFLMYPEELFV 603

Query: 615 QGLPEGVPFQHPENYDLATLKWILENKAGISFTINRPFLXXXXXXXXXXXXTDAVRSVTS 794
            GLPEG+  + P  + +A L+ ILE    I F I RP L            T+ V+   S
Sbjct: 604 VGLPEGISLRRPNCFGIAKLRKILEASNSIQFVIKRPEL-----------LTEGVKEPLS 652

Query: 795 PSESC----VPINVKTEPMEDSGISLKAAAVSVKKESEDPNY 908
            S++     +     T P  DSG  L     S+K++    NY
Sbjct: 653 DSQATRSPWLLSPPPTPPERDSGDPL--VDESLKRQGFQENY 692



 Score = 58.5 bits (140), Expect = 8e-09
 Identities = 31/78 (39%), Positives = 46/78 (58%)
 Frame = +3

Query: 483  GETEILRKAVEDYFCFCYGKALGTTAMVPVPYEKLLKDQAAVVVQGLPEGVPFQHPENYD 662
            GE  ILR+ V++ F   YG+ALG    V VPY+ +     AV V GLP+ +PF++P  YD
Sbjct: 797  GEKVILREQVKELFNEKYGEALGLNRPVLVPYKLIRDSPDAVEVTGLPDDIPFRNPNTYD 856

Query: 663  LATLKWILENKAGISFTI 716
            +  L+ IL+ +  +   I
Sbjct: 857  IHRLEKILKAREHVRMVI 874


>ref|XP_002698228.1| PREDICTED: GTF2I repeat domain containing 1 isoform 2 [Bos taurus].
          Length = 960

 Score =  143 bits (361), Expect = 2e-34
 Identities = 75/174 (43%), Positives = 105/174 (60%), Gaps = 13/174 (7%)
 Frame = +3

Query: 243 VVTFLVSALESMCKELAKSKAEVACIAMYEADVFVVGTEKGRAFVNARTDLQKDFAKYCV 422
           ++T LVSAL+SMC  L+K  AEVAC+A+++   FVVGTEKGR F+NAR +LQ DF ++C 
Sbjct: 30  IITSLVSALDSMCSALSKLNAEVACVAVHDESAFVVGTEKGRMFLNARKELQSDFLRFCR 89

Query: 423 AEGLPEVKPPHPVNGMQIDSG-------------ETEILRKAVEDYFCFCYGKALGTTAM 563
                E +  HP    + + G             +  +LRK VE+ F   Y +ALG  ++
Sbjct: 90  GAPWKEPEAEHPKKVPRGEGGGRNVPRSALEHGSDVYLLRKMVEEVFDVLYSEALGRASV 149

Query: 564 VPVPYEKLLKDQAAVVVQGLPEGVPFQHPENYDLATLKWILENKAGISFTINRP 725
           VP+PYE+LL++   + VQGLPEG+ F+ P  YD   L  ILE+   I F + RP
Sbjct: 150 VPLPYERLLREPGLLAVQGLPEGLAFRRPAEYDPKALMAILEHSHRIRFKLKRP 203



 Score = 65.5 bits (158), Expect = 7e-11
 Identities = 34/84 (40%), Positives = 48/84 (57%)
 Frame = +3

Query: 477 DSGETEILRKAVEDYFCFCYGKALGTTAMVPVPYEKLLKDQAAVVVQGLPEGVPFQHPEN 656
           ++ +   LR+ V+  F   Y +ALG   MVPVPY K+  D  AV + G+P+ +PF+ P  
Sbjct: 344 ETEDINTLRECVQILFNSRYAEALGLDHMVPVPYRKIACDPEAVEIVGIPDKIPFKRPCT 403

Query: 657 YDLATLKWILENKAGISFTINRPF 728
           Y +  LK ILE +  I F I R F
Sbjct: 404 YGVPKLKRILEERHSIHFVIKRMF 427



 Score = 63.9 bits (154), Expect = 2e-10
 Identities = 34/86 (39%), Positives = 51/86 (59%)
 Frame = +3

Query: 471 QIDSGETEILRKAVEDYFCFCYGKALGTTAMVPVPYEKLLKDQAAVVVQGLPEGVPFQHP 650
           +ID   T  LR+ V+D F   YG+ALG    V VPY+++  +  +V+++GLP G+PF+ P
Sbjct: 698 RIDIANT--LREQVQDLFNKKYGEALGIKYPVQVPYKRIKSNPGSVIIEGLPPGIPFRKP 755

Query: 651 ENYDLATLKWILENKAGISFTINRPF 728
             +    L+ IL     I FT+ RPF
Sbjct: 756 CTFGSQNLERILAVADKIKFTVTRPF 781



 Score = 60.8 bits (146), Expect = 2e-09
 Identities = 53/162 (32%), Positives = 71/162 (43%), Gaps = 4/162 (2%)
 Frame = +3

Query: 435 PEVKPPHPVNGMQIDSGETEILRKAVEDYFCFCYGKALGTTAMVPVPYEKLLKDQAAVVV 614
           PE +P    +G  I       LRK VE  F   Y KA+G +  V VPY K L     + V
Sbjct: 549 PEERPVEDSHGDVIRP-----LRKQVELLFNTRYAKAIGISEPVKVPYSKFLMYPEELFV 603

Query: 615 QGLPEGVPFQHPENYDLATLKWILENKAGISFTINRPFLXXXXXXXXXXXXTDAVRSVTS 794
            GLPEG+  + P  + +A L+ ILE    I F I RP L            T+ V+   S
Sbjct: 604 VGLPEGISLRRPNCFGIAKLRKILEASNSIQFVIKRPEL-----------LTEGVKEPLS 652

Query: 795 PSESC----VPINVKTEPMEDSGISLKAAAVSVKKESEDPNY 908
            S++     +     T P  DSG  L     S+K++    NY
Sbjct: 653 DSQATRSPWLLSPPPTPPERDSGDPL--VDESLKRQGFQENY 692



 Score = 58.5 bits (140), Expect = 8e-09
 Identities = 31/78 (39%), Positives = 46/78 (58%)
 Frame = +3

Query: 483  GETEILRKAVEDYFCFCYGKALGTTAMVPVPYEKLLKDQAAVVVQGLPEGVPFQHPENYD 662
            GE  ILR+ V++ F   YG+ALG    V VPY+ +     AV V GLP+ +PF++P  YD
Sbjct: 797  GEKVILREQVKELFNEKYGEALGLNRPVLVPYKLIRDSPDAVEVTGLPDDIPFRNPNTYD 856

Query: 663  LATLKWILENKAGISFTI 716
            +  L+ IL+ +  +   I
Sbjct: 857  IHRLEKILKAREHVRMVI 874


>ref|XP_002698227.1| PREDICTED: GTF2I repeat domain containing 1 isoform 1 [Bos taurus].
          Length = 945

 Score =  143 bits (361), Expect = 2e-34
 Identities = 75/174 (43%), Positives = 105/174 (60%), Gaps = 13/174 (7%)
 Frame = +3

Query: 243 VVTFLVSALESMCKELAKSKAEVACIAMYEADVFVVGTEKGRAFVNARTDLQKDFAKYCV 422
           ++T LVSAL+SMC  L+K  AEVAC+A+++   FVVGTEKGR F+NAR +LQ DF ++C 
Sbjct: 30  IITSLVSALDSMCSALSKLNAEVACVAVHDESAFVVGTEKGRMFLNARKELQSDFLRFCR 89

Query: 423 AEGLPEVKPPHPVNGMQIDSG-------------ETEILRKAVEDYFCFCYGKALGTTAM 563
                E +  HP    + + G             +  +LRK VE+ F   Y +ALG  ++
Sbjct: 90  GAPWKEPEAEHPKKVPRGEGGGRNVPRSALEHGSDVYLLRKMVEEVFDVLYSEALGRASV 149

Query: 564 VPVPYEKLLKDQAAVVVQGLPEGVPFQHPENYDLATLKWILENKAGISFTINRP 725
           VP+PYE+LL++   + VQGLPEG+ F+ P  YD   L  ILE+   I F + RP
Sbjct: 150 VPLPYERLLREPGLLAVQGLPEGLAFRRPAEYDPKALMAILEHSHRIRFKLKRP 203



 Score = 65.5 bits (158), Expect = 7e-11
 Identities = 34/84 (40%), Positives = 48/84 (57%)
 Frame = +3

Query: 477 DSGETEILRKAVEDYFCFCYGKALGTTAMVPVPYEKLLKDQAAVVVQGLPEGVPFQHPEN 656
           ++ +   LR+ V+  F   Y +ALG   MVPVPY K+  D  AV + G+P+ +PF+ P  
Sbjct: 344 ETEDINTLRECVQILFNSRYAEALGLDHMVPVPYRKIACDPEAVEIVGIPDKIPFKRPCT 403

Query: 657 YDLATLKWILENKAGISFTINRPF 728
           Y +  LK ILE +  I F I R F
Sbjct: 404 YGVPKLKRILEERHSIHFVIKRMF 427



 Score = 63.9 bits (154), Expect = 2e-10
 Identities = 34/86 (39%), Positives = 51/86 (59%)
 Frame = +3

Query: 471 QIDSGETEILRKAVEDYFCFCYGKALGTTAMVPVPYEKLLKDQAAVVVQGLPEGVPFQHP 650
           +ID   T  LR+ V+D F   YG+ALG    V VPY+++  +  +V+++GLP G+PF+ P
Sbjct: 683 RIDIANT--LREQVQDLFNKKYGEALGIKYPVQVPYKRIKSNPGSVIIEGLPPGIPFRKP 740

Query: 651 ENYDLATLKWILENKAGISFTINRPF 728
             +    L+ IL     I FT+ RPF
Sbjct: 741 CTFGSQNLERILAVADKIKFTVTRPF 766



 Score = 59.7 bits (143), Expect = 4e-09
 Identities = 39/99 (39%), Positives = 49/99 (49%)
 Frame = +3

Query: 435 PEVKPPHPVNGMQIDSGETEILRKAVEDYFCFCYGKALGTTAMVPVPYEKLLKDQAAVVV 614
           PE +P    +G  I       LRK VE  F   Y KA+G +  V VPY K L     + V
Sbjct: 549 PEERPVEDSHGDVIRP-----LRKQVELLFNTRYAKAIGISEPVKVPYSKFLMYPEELFV 603

Query: 615 QGLPEGVPFQHPENYDLATLKWILENKAGISFTINRPFL 731
            GLPEG+  + P  + +A L+ ILE    I F I RP L
Sbjct: 604 VGLPEGISLRRPNCFGIAKLRKILEASNSIQFVIKRPEL 642



 Score = 58.5 bits (140), Expect = 8e-09
 Identities = 31/78 (39%), Positives = 46/78 (58%)
 Frame = +3

Query: 483  GETEILRKAVEDYFCFCYGKALGTTAMVPVPYEKLLKDQAAVVVQGLPEGVPFQHPENYD 662
            GE  ILR+ V++ F   YG+ALG    V VPY+ +     AV V GLP+ +PF++P  YD
Sbjct: 782  GEKVILREQVKELFNEKYGEALGLNRPVLVPYKLIRDSPDAVEVTGLPDDIPFRNPNTYD 841

Query: 663  LATLKWILENKAGISFTI 716
            +  L+ IL+ +  +   I
Sbjct: 842  IHRLEKILKAREHVRMVI 859


>ref|XP_886895.3| PREDICTED: GTF2I repeat domain containing 1 isoform 10 [Bos
           taurus].
          Length = 945

 Score =  143 bits (361), Expect = 2e-34
 Identities = 75/174 (43%), Positives = 105/174 (60%), Gaps = 13/174 (7%)
 Frame = +3

Query: 243 VVTFLVSALESMCKELAKSKAEVACIAMYEADVFVVGTEKGRAFVNARTDLQKDFAKYCV 422
           ++T LVSAL+SMC  L+K  AEVAC+A+++   FVVGTEKGR F+NAR +LQ DF ++C 
Sbjct: 30  IITSLVSALDSMCSALSKLNAEVACVAVHDESAFVVGTEKGRMFLNARKELQSDFLRFCR 89

Query: 423 AEGLPEVKPPHPVNGMQIDSG-------------ETEILRKAVEDYFCFCYGKALGTTAM 563
                E +  HP    + + G             +  +LRK VE+ F   Y +ALG  ++
Sbjct: 90  GAPWKEPEAEHPKKVPRGEGGGRNVPRSALEHGSDVYLLRKMVEEVFDVLYSEALGRASV 149

Query: 564 VPVPYEKLLKDQAAVVVQGLPEGVPFQHPENYDLATLKWILENKAGISFTINRP 725
           VP+PYE+LL++   + VQGLPEG+ F+ P  YD   L  ILE+   I F + RP
Sbjct: 150 VPLPYERLLREPGLLAVQGLPEGLAFRRPAEYDPKALMAILEHSHRIRFKLKRP 203



 Score = 65.5 bits (158), Expect = 7e-11
 Identities = 34/84 (40%), Positives = 48/84 (57%)
 Frame = +3

Query: 477 DSGETEILRKAVEDYFCFCYGKALGTTAMVPVPYEKLLKDQAAVVVQGLPEGVPFQHPEN 656
           ++ +   LR+ V+  F   Y +ALG   MVPVPY K+  D  AV + G+P+ +PF+ P  
Sbjct: 344 ETEDINTLRECVQILFNSRYAEALGLDHMVPVPYRKIACDPEAVEIVGIPDKIPFKRPCT 403

Query: 657 YDLATLKWILENKAGISFTINRPF 728
           Y +  LK ILE +  I F I R F
Sbjct: 404 YGVPKLKRILEERHSIHFVIKRMF 427



 Score = 63.9 bits (154), Expect = 2e-10
 Identities = 34/86 (39%), Positives = 51/86 (59%)
 Frame = +3

Query: 471 QIDSGETEILRKAVEDYFCFCYGKALGTTAMVPVPYEKLLKDQAAVVVQGLPEGVPFQHP 650
           +ID   T  LR+ V+D F   YG+ALG    V VPY+++  +  +V+++GLP G+PF+ P
Sbjct: 683 RIDIANT--LREQVQDLFNKKYGEALGIKYPVQVPYKRIKSNPGSVIIEGLPPGIPFRKP 740

Query: 651 ENYDLATLKWILENKAGISFTINRPF 728
             +    L+ IL     I FT+ RPF
Sbjct: 741 CTFGSQNLERILAVADKIKFTVTRPF 766



 Score = 59.7 bits (143), Expect = 4e-09
 Identities = 39/99 (39%), Positives = 49/99 (49%)
 Frame = +3

Query: 435 PEVKPPHPVNGMQIDSGETEILRKAVEDYFCFCYGKALGTTAMVPVPYEKLLKDQAAVVV 614
           PE +P    +G  I       LRK VE  F   Y KA+G +  V VPY K L     + V
Sbjct: 549 PEERPVEDSHGDVIRP-----LRKQVELLFNTRYAKAIGISEPVKVPYSKFLMYPEELFV 603

Query: 615 QGLPEGVPFQHPENYDLATLKWILENKAGISFTINRPFL 731
            GLPEG+  + P  + +A L+ ILE    I F I RP L
Sbjct: 604 VGLPEGISLRRPNCFGIAKLRKILEASNSIQFVIKRPEL 642



 Score = 58.5 bits (140), Expect = 8e-09
 Identities = 31/78 (39%), Positives = 46/78 (58%)
 Frame = +3

Query: 483  GETEILRKAVEDYFCFCYGKALGTTAMVPVPYEKLLKDQAAVVVQGLPEGVPFQHPENYD 662
            GE  ILR+ V++ F   YG+ALG    V VPY+ +     AV V GLP+ +PF++P  YD
Sbjct: 782  GEKVILREQVKELFNEKYGEALGLNRPVLVPYKLIRDSPDAVEVTGLPDDIPFRNPNTYD 841

Query: 663  LATLKWILENKAGISFTI 716
            +  L+ IL+ +  +   I
Sbjct: 842  IHRLEKILKAREHVRMVI 859


  Database: RefSeq49_BP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 17,681,374
  Number of sequences in database:  33,088
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 37,639,092
Number of extensions: 1068930
Number of successful extensions: 3971
Number of sequences better than 1.0e-05: 6
Number of HSP's gapped: 3950
Number of HSP's successfully gapped: 28
Length of query: 318
Length of database: 17,681,374
Length adjustment: 102
Effective length of query: 216
Effective length of database: 14,306,398
Effective search space: 3090181968
Effective search space used: 3090181968
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-004236
         (955 letters)

Database: RefSeq49_CP.fasta 
           33,336 sequences; 18,874,504 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|XP_849558.1| PREDICTED: similar to GTF2IRD2 beta [Canis fami...   412   e-115
Alignment   gi|XP_536840.2| PREDICTED: similar to general transcription fac...   371   e-103
Alignment   gi|XP_856663.1| PREDICTED: similar to general transcription fac...   371   e-103
Alignment   gi|XP_856578.1| PREDICTED: similar to general transcription fac...   371   e-103
Alignment   gi|XP_856540.1| PREDICTED: similar to GTF2I repeat domain conta...   371   e-103
Alignment   gi|XP_856495.1| PREDICTED: similar to general transcription fac...   371   e-103
Alignment   gi|XP_856738.1| PREDICTED: similar to general transcription fac...   360   1e-99
Alignment   gi|XP_848656.1| PREDICTED: similar to general transcription fac...   360   1e-99
Alignment   gi|XP_856619.1| PREDICTED: similar to general transcription fac...   320   1e-87
Alignment   gi|XP_848818.1| PREDICTED: similar to GTF2I repeat domain conta...   145   5e-35

>ref|XP_849558.1| PREDICTED: similar to GTF2IRD2 beta [Canis familiaris].
          Length = 948

 Score =  412 bits (1059), Expect = e-115
 Identities = 207/258 (80%), Positives = 223/258 (86%)
 Frame = +3

Query: 180 MAQVAMSTLPVENEESSDSRMVVTFLVSALESMCKELAKSKAEVACIAMYEADVFVVGTE 359
           MAQVA+S LP+ENEESS+SRMVVTFLVSALESMCKELAKSKAEVACIAMYE DVFVVGTE
Sbjct: 1   MAQVAVSALPMENEESSESRMVVTFLVSALESMCKELAKSKAEVACIAMYETDVFVVGTE 60

Query: 360 KGRAFVNARTDLQKDFAKYCVAEGLPEVKPPHPVNGMQIDSGETEILRKAVEDYFCFCYG 539
           KGRAFVNAR DLQKDFAKYC+AEG+ E KPP P N MQIDSGETEILRKAVEDYFCFCYG
Sbjct: 61  KGRAFVNARMDLQKDFAKYCIAEGVHEAKPPCPTNRMQIDSGETEILRKAVEDYFCFCYG 120

Query: 540 KALGTTAMVPVPYEKLLKDQAAVVVQGLPEGVPFQHPENYDLATLKWILENKAGISFTIN 719
           KALGTTAMVP+PYEK+L+D AA+VVQGLPEGV FQHPENY L TLKWILENKAGISF IN
Sbjct: 121 KALGTTAMVPIPYEKILRDPAALVVQGLPEGVAFQHPENYGLTTLKWILENKAGISFIIN 180

Query: 720 RPFLXXXXXXXXXXXXTDAVRSVTSPSESCVPINVKTEPMEDSGISLKAAAVSVKKESED 899
           RPFL            TDA RSVT PSESC  I+VKTEPMEDSG+++K AAVSVKKESED
Sbjct: 181 RPFLGPANQLGEPVVVTDAKRSVTLPSESCGTISVKTEPMEDSGMAVKVAAVSVKKESED 240

Query: 900 PNYYQHNMQDSHHSSGSN 953
           PNYY +NMQ + H  GS+
Sbjct: 241 PNYYLYNMQGNTHPCGSS 258



 Score = 56.6 bits (135), Expect = 3e-08
 Identities = 28/76 (36%), Positives = 45/76 (59%)
 Frame = +3

Query: 498 LRKAVEDYFCFCYGKALGTTAMVPVPYEKLLKDQAAVVVQGLPEGVPFQHPENYDLATLK 677
           LR+ V D F   +G+A+G    V VPY K+  +   VV+ G+P GV F+ P   ++++++
Sbjct: 331 LREQVNDLFSRKFGEAIGVDFPVKVPYRKITFNPGCVVIDGMPPGVVFKAPGYLEISSMR 390

Query: 678 WILENKAGISFTINRP 725
            IL+    I FT+ RP
Sbjct: 391 RILDAAEFIKFTVIRP 406


>ref|XP_536840.2| PREDICTED: similar to general transcription factor II, i isoform 4
           isoform 1 [Canis familiaris].
          Length = 958

 Score =  371 bits (953), Expect = e-103
 Identities = 188/263 (71%), Positives = 212/263 (80%), Gaps = 5/263 (1%)
 Frame = +3

Query: 180 MAQVAMSTLPVENEESSDSRMVVTFLVSALESMCKELAKSKAEVACIAMYEADVFVVGTE 359
           MAQVAMSTLPVE+EESS+SRMVVTFL+SALESMCKELAKSKAEVACIA+YE DVFVVGTE
Sbjct: 1   MAQVAMSTLPVEDEESSESRMVVTFLMSALESMCKELAKSKAEVACIAVYETDVFVVGTE 60

Query: 360 KGRAFVNARTDLQKDFAKYCVAEG-----LPEVKPPHPVNGMQIDSGETEILRKAVEDYF 524
           +GRAFVN R D QKDF KYCV E      + ++K   P N M +D+ E E LRK VEDYF
Sbjct: 61  RGRAFVNTRKDFQKDFVKYCVEEEEKAAEMHKMKSTTPANRMSVDAVEIETLRKTVEDYF 120

Query: 525 CFCYGKALGTTAMVPVPYEKLLKDQAAVVVQGLPEGVPFQHPENYDLATLKWILENKAGI 704
           CFCYGKALG + +VPVPYEK+L+DQ+AVVVQGLPEGV F+HPENYDLATLKWILENKAGI
Sbjct: 121 CFCYGKALGKSTVVPVPYEKMLRDQSAVVVQGLPEGVAFKHPENYDLATLKWILENKAGI 180

Query: 705 SFTINRPFLXXXXXXXXXXXXTDAVRSVTSPSESCVPINVKTEPMEDSGISLKAAAVSVK 884
           SF I RPFL            TDA RS+ SP  SC P+ VKTEP EDSGISL+ AAV+VK
Sbjct: 181 SFIIKRPFLEPKKHLGGRVMVTDAERSMLSPGGSCGPVKVKTEPTEDSGISLEMAAVTVK 240

Query: 885 KESEDPNYYQHNMQDSHHSSGSN 953
           +ESEDP+YYQ+N+Q SHHSS  N
Sbjct: 241 EESEDPDYYQYNIQGSHHSSEGN 263



 Score = 60.8 bits (146), Expect = 2e-09
 Identities = 30/77 (38%), Positives = 47/77 (61%)
 Frame = +3

Query: 498  LRKAVEDYFCFCYGKALGTTAMVPVPYEKLLKDQAAVVVQGLPEGVPFQHPENYDLATLK 677
            LR+ V D F   +G+A+G    V VPY K+  +   VVV G+P GV F+ P   ++++++
Sbjct: 828  LREQVNDLFSRKFGEAIGMGFPVKVPYRKITINPGCVVVDGMPPGVSFKAPSYLEISSMR 887

Query: 678  WILENKAGISFTINRPF 728
             IL++   I FT+ RPF
Sbjct: 888  RILDSAEFIKFTVIRPF 904



 Score = 59.3 bits (142), Expect = 5e-09
 Identities = 31/78 (39%), Positives = 44/78 (56%)
 Frame = +3

Query: 498 LRKAVEDYFCFCYGKALGTTAMVPVPYEKLLKDQAAVVVQGLPEGVPFQHPENYDLATLK 677
           LRK V+  FC  + +ALG+T    VPY+K       + V+GLPE +PF+ P  Y +  L+
Sbjct: 425 LRKMVDQLFCKKFAEALGSTEAKAVPYQKFEAHPNDLYVEGLPENIPFRSPSWYGIPRLE 484

Query: 678 WILENKAGISFTINRPFL 731
            I++    I F I RP L
Sbjct: 485 KIIQVGNRIKFVIKRPEL 502



 Score = 56.6 bits (135), Expect = 3e-08
 Identities = 29/78 (37%), Positives = 43/78 (55%)
 Frame = +3

Query: 498 LRKAVEDYFCFCYGKALGTTAMVPVPYEKLLKDQAAVVVQGLPEGVPFQHPENYDLATLK 677
           LRK VE+ F   + +ALG T  V VPY     +   + V+GLPEG+PF+ P  + +  L+
Sbjct: 530 LRKQVEEIFNLKFAQALGLTEAVKVPYPVFESNPEFLYVEGLPEGIPFRSPTWFGIPRLE 589

Query: 678 WILENKAGISFTINRPFL 731
            I+     I F + +P L
Sbjct: 590 RIVRGSNKIKFVVKKPEL 607



 Score = 56.6 bits (135), Expect = 3e-08
 Identities = 31/76 (40%), Positives = 42/76 (55%)
 Frame = +3

Query: 498 LRKAVEDYFCFCYGKALGTTAMVPVPYEKLLKDQAAVVVQGLPEGVPFQHPENYDLATLK 677
           L++ VE+ F    G+ALG    V VP+           V+GLPEGVPF+ P  + +  L+
Sbjct: 692 LKQKVENLFNEKCGEALGLKQAVKVPFALFESFPEDFYVEGLPEGVPFRRPSTFGIPRLE 751

Query: 678 WILENKAGISFTINRP 725
            IL NKA I F I +P
Sbjct: 752 KILRNKAKIKFIIKKP 767



 Score = 52.8 bits (125), Expect = 5e-07
 Identities = 32/107 (29%), Positives = 49/107 (45%), Gaps = 14/107 (13%)
 Frame = +3

Query: 444 KPPHPVNGMQIDSGETEI--------------LRKAVEDYFCFCYGKALGTTAMVPVPYE 581
           +PP P      ++G+ ++              LRK VE+ F   Y +A+     V +PY 
Sbjct: 288 EPPQPAVSEPANAGKRKVREFNFEKWNARITDLRKQVEELFERKYAQAIKAKGPVTIPYP 347

Query: 582 KLLKDQAAVVVQGLPEGVPFQHPENYDLATLKWILENKAGISFTINR 722
                   + V+GLPEG+PF+ P  Y +  L+ IL  K  I F I +
Sbjct: 348 LFQSHVEDLYVEGLPEGIPFRRPSTYGIPRLERILLAKERIRFVIKK 394


>ref|XP_856663.1| PREDICTED: similar to general transcription factor II, i isoform 2
           isoform 7 [Canis familiaris].
          Length = 979

 Score =  371 bits (953), Expect = e-103
 Identities = 188/263 (71%), Positives = 212/263 (80%), Gaps = 5/263 (1%)
 Frame = +3

Query: 180 MAQVAMSTLPVENEESSDSRMVVTFLVSALESMCKELAKSKAEVACIAMYEADVFVVGTE 359
           MAQVAMSTLPVE+EESS+SRMVVTFL+SALESMCKELAKSKAEVACIA+YE DVFVVGTE
Sbjct: 1   MAQVAMSTLPVEDEESSESRMVVTFLMSALESMCKELAKSKAEVACIAVYETDVFVVGTE 60

Query: 360 KGRAFVNARTDLQKDFAKYCVAEG-----LPEVKPPHPVNGMQIDSGETEILRKAVEDYF 524
           +GRAFVN R D QKDF KYCV E      + ++K   P N M +D+ E E LRK VEDYF
Sbjct: 61  RGRAFVNTRKDFQKDFVKYCVEEEEKAAEMHKMKSTTPANRMSVDAVEIETLRKTVEDYF 120

Query: 525 CFCYGKALGTTAMVPVPYEKLLKDQAAVVVQGLPEGVPFQHPENYDLATLKWILENKAGI 704
           CFCYGKALG + +VPVPYEK+L+DQ+AVVVQGLPEGV F+HPENYDLATLKWILENKAGI
Sbjct: 121 CFCYGKALGKSTVVPVPYEKMLRDQSAVVVQGLPEGVAFKHPENYDLATLKWILENKAGI 180

Query: 705 SFTINRPFLXXXXXXXXXXXXTDAVRSVTSPSESCVPINVKTEPMEDSGISLKAAAVSVK 884
           SF I RPFL            TDA RS+ SP  SC P+ VKTEP EDSGISL+ AAV+VK
Sbjct: 181 SFIIKRPFLEPKKHLGGRVMVTDAERSMLSPGGSCGPVKVKTEPTEDSGISLEMAAVTVK 240

Query: 885 KESEDPNYYQHNMQDSHHSSGSN 953
           +ESEDP+YYQ+N+Q SHHSS  N
Sbjct: 241 EESEDPDYYQYNIQGSHHSSEGN 263



 Score = 60.8 bits (146), Expect = 2e-09
 Identities = 30/77 (38%), Positives = 47/77 (61%)
 Frame = +3

Query: 498  LRKAVEDYFCFCYGKALGTTAMVPVPYEKLLKDQAAVVVQGLPEGVPFQHPENYDLATLK 677
            LR+ V D F   +G+A+G    V VPY K+  +   VVV G+P GV F+ P   ++++++
Sbjct: 849  LREQVNDLFSRKFGEAIGMGFPVKVPYRKITINPGCVVVDGMPPGVSFKAPSYLEISSMR 908

Query: 678  WILENKAGISFTINRPF 728
             IL++   I FT+ RPF
Sbjct: 909  RILDSAEFIKFTVIRPF 925



 Score = 59.3 bits (142), Expect = 5e-09
 Identities = 31/78 (39%), Positives = 44/78 (56%)
 Frame = +3

Query: 498 LRKAVEDYFCFCYGKALGTTAMVPVPYEKLLKDQAAVVVQGLPEGVPFQHPENYDLATLK 677
           LRK V+  FC  + +ALG+T    VPY+K       + V+GLPE +PF+ P  Y +  L+
Sbjct: 446 LRKMVDQLFCKKFAEALGSTEAKAVPYQKFEAHPNDLYVEGLPENIPFRSPSWYGIPRLE 505

Query: 678 WILENKAGISFTINRPFL 731
            I++    I F I RP L
Sbjct: 506 KIIQVGNRIKFVIKRPEL 523



 Score = 56.6 bits (135), Expect = 3e-08
 Identities = 29/78 (37%), Positives = 43/78 (55%)
 Frame = +3

Query: 498 LRKAVEDYFCFCYGKALGTTAMVPVPYEKLLKDQAAVVVQGLPEGVPFQHPENYDLATLK 677
           LRK VE+ F   + +ALG T  V VPY     +   + V+GLPEG+PF+ P  + +  L+
Sbjct: 551 LRKQVEEIFNLKFAQALGLTEAVKVPYPVFESNPEFLYVEGLPEGIPFRSPTWFGIPRLE 610

Query: 678 WILENKAGISFTINRPFL 731
            I+     I F + +P L
Sbjct: 611 RIVRGSNKIKFVVKKPEL 628



 Score = 56.6 bits (135), Expect = 3e-08
 Identities = 31/76 (40%), Positives = 42/76 (55%)
 Frame = +3

Query: 498 LRKAVEDYFCFCYGKALGTTAMVPVPYEKLLKDQAAVVVQGLPEGVPFQHPENYDLATLK 677
           L++ VE+ F    G+ALG    V VP+           V+GLPEGVPF+ P  + +  L+
Sbjct: 713 LKQKVENLFNEKCGEALGLKQAVKVPFALFESFPEDFYVEGLPEGVPFRRPSTFGIPRLE 772

Query: 678 WILENKAGISFTINRP 725
            IL NKA I F I +P
Sbjct: 773 KILRNKAKIKFIIKKP 788



 Score = 52.8 bits (125), Expect = 5e-07
 Identities = 32/107 (29%), Positives = 49/107 (45%), Gaps = 14/107 (13%)
 Frame = +3

Query: 444 KPPHPVNGMQIDSGETEI--------------LRKAVEDYFCFCYGKALGTTAMVPVPYE 581
           +PP P      ++G+ ++              LRK VE+ F   Y +A+     V +PY 
Sbjct: 309 EPPQPAVSEPANAGKRKVREFNFEKWNARITDLRKQVEELFERKYAQAIKAKGPVTIPYP 368

Query: 582 KLLKDQAAVVVQGLPEGVPFQHPENYDLATLKWILENKAGISFTINR 722
                   + V+GLPEG+PF+ P  Y +  L+ IL  K  I F I +
Sbjct: 369 LFQSHVEDLYVEGLPEGIPFRRPSTYGIPRLERILLAKERIRFVIKK 415


>ref|XP_856578.1| PREDICTED: similar to general transcription factor II, i isoform 2
           isoform 5 [Canis familiaris].
          Length = 564

 Score =  371 bits (953), Expect = e-103
 Identities = 188/263 (71%), Positives = 212/263 (80%), Gaps = 5/263 (1%)
 Frame = +3

Query: 180 MAQVAMSTLPVENEESSDSRMVVTFLVSALESMCKELAKSKAEVACIAMYEADVFVVGTE 359
           MAQVAMSTLPVE+EESS+SRMVVTFL+SALESMCKELAKSKAEVACIA+YE DVFVVGTE
Sbjct: 1   MAQVAMSTLPVEDEESSESRMVVTFLMSALESMCKELAKSKAEVACIAVYETDVFVVGTE 60

Query: 360 KGRAFVNARTDLQKDFAKYCVAEG-----LPEVKPPHPVNGMQIDSGETEILRKAVEDYF 524
           +GRAFVN R D QKDF KYCV E      + ++K   P N M +D+ E E LRK VEDYF
Sbjct: 61  RGRAFVNTRKDFQKDFVKYCVEEEEKAAEMHKMKSTTPANRMSVDAVEIETLRKTVEDYF 120

Query: 525 CFCYGKALGTTAMVPVPYEKLLKDQAAVVVQGLPEGVPFQHPENYDLATLKWILENKAGI 704
           CFCYGKALG + +VPVPYEK+L+DQ+AVVVQGLPEGV F+HPENYDLATLKWILENKAGI
Sbjct: 121 CFCYGKALGKSTVVPVPYEKMLRDQSAVVVQGLPEGVAFKHPENYDLATLKWILENKAGI 180

Query: 705 SFTINRPFLXXXXXXXXXXXXTDAVRSVTSPSESCVPINVKTEPMEDSGISLKAAAVSVK 884
           SF I RPFL            TDA RS+ SP  SC P+ VKTEP EDSGISL+ AAV+VK
Sbjct: 181 SFIIKRPFLEPKKHLGGRVMVTDAERSMLSPGGSCGPVKVKTEPTEDSGISLEMAAVTVK 240

Query: 885 KESEDPNYYQHNMQDSHHSSGSN 953
           +ESEDP+YYQ+N+Q SHHSS  N
Sbjct: 241 EESEDPDYYQYNIQGSHHSSEGN 263



 Score = 59.3 bits (142), Expect = 5e-09
 Identities = 31/78 (39%), Positives = 44/78 (56%)
 Frame = +3

Query: 498 LRKAVEDYFCFCYGKALGTTAMVPVPYEKLLKDQAAVVVQGLPEGVPFQHPENYDLATLK 677
           LRK V+  FC  + +ALG+T    VPY+K       + V+GLPE +PF+ P  Y +  L+
Sbjct: 446 LRKMVDQLFCKKFAEALGSTEAKAVPYQKFEAHPNDLYVEGLPENIPFRSPSWYGIPRLE 505

Query: 678 WILENKAGISFTINRPFL 731
            I++    I F I RP L
Sbjct: 506 KIIQVGNRIKFVIKRPEL 523



 Score = 52.8 bits (125), Expect = 5e-07
 Identities = 32/107 (29%), Positives = 49/107 (45%), Gaps = 14/107 (13%)
 Frame = +3

Query: 444 KPPHPVNGMQIDSGETEI--------------LRKAVEDYFCFCYGKALGTTAMVPVPYE 581
           +PP P      ++G+ ++              LRK VE+ F   Y +A+     V +PY 
Sbjct: 309 EPPQPAVSEPANAGKRKVREFNFEKWNARITDLRKQVEELFERKYAQAIKAKGPVTIPYP 368

Query: 582 KLLKDQAAVVVQGLPEGVPFQHPENYDLATLKWILENKAGISFTINR 722
                   + V+GLPEG+PF+ P  Y +  L+ IL  K  I F I +
Sbjct: 369 LFQSHVEDLYVEGLPEGIPFRRPSTYGIPRLERILLAKERIRFVIKK 415


>ref|XP_856540.1| PREDICTED: similar to GTF2I repeat domain containing 2 isoform 4
           [Canis familiaris].
          Length = 411

 Score =  371 bits (953), Expect = e-103
 Identities = 188/263 (71%), Positives = 212/263 (80%), Gaps = 5/263 (1%)
 Frame = +3

Query: 180 MAQVAMSTLPVENEESSDSRMVVTFLVSALESMCKELAKSKAEVACIAMYEADVFVVGTE 359
           MAQVAMSTLPVE+EESS+SRMVVTFL+SALESMCKELAKSKAEVACIA+YE DVFVVGTE
Sbjct: 1   MAQVAMSTLPVEDEESSESRMVVTFLMSALESMCKELAKSKAEVACIAVYETDVFVVGTE 60

Query: 360 KGRAFVNARTDLQKDFAKYCVAEG-----LPEVKPPHPVNGMQIDSGETEILRKAVEDYF 524
           +GRAFVN R D QKDF KYCV E      + ++K   P N M +D+ E E LRK VEDYF
Sbjct: 61  RGRAFVNTRKDFQKDFVKYCVEEEEKAAEMHKMKSTTPANRMSVDAVEIETLRKTVEDYF 120

Query: 525 CFCYGKALGTTAMVPVPYEKLLKDQAAVVVQGLPEGVPFQHPENYDLATLKWILENKAGI 704
           CFCYGKALG + +VPVPYEK+L+DQ+AVVVQGLPEGV F+HPENYDLATLKWILENKAGI
Sbjct: 121 CFCYGKALGKSTVVPVPYEKMLRDQSAVVVQGLPEGVAFKHPENYDLATLKWILENKAGI 180

Query: 705 SFTINRPFLXXXXXXXXXXXXTDAVRSVTSPSESCVPINVKTEPMEDSGISLKAAAVSVK 884
           SF I RPFL            TDA RS+ SP  SC P+ VKTEP EDSGISL+ AAV+VK
Sbjct: 181 SFIIKRPFLEPKKHLGGRVMVTDAERSMLSPGGSCGPVKVKTEPTEDSGISLEMAAVTVK 240

Query: 885 KESEDPNYYQHNMQDSHHSSGSN 953
           +ESEDP+YYQ+N+Q SHHSS  N
Sbjct: 241 EESEDPDYYQYNIQGSHHSSEGN 263



 Score = 55.8 bits (133), Expect = 6e-08
 Identities = 28/75 (37%), Positives = 45/75 (60%)
 Frame = +3

Query: 498 LRKAVEDYFCFCYGKALGTTAMVPVPYEKLLKDQAAVVVQGLPEGVPFQHPENYDLATLK 677
           LR+ V D F   +G+A+G    V VPY K+  +   VVV G+P GV F+ P   ++++++
Sbjct: 337 LREQVNDLFSRKFGEAIGMGFPVKVPYRKITINPGCVVVDGMPPGVSFKAPSYLEISSMR 396

Query: 678 WILENKAGISFTINR 722
            IL++   I FT+ R
Sbjct: 397 RILDSAEFIKFTVIR 411


>ref|XP_856495.1| PREDICTED: similar to general transcription factor II, i isoform 2
           isoform 3 [Canis familiaris].
          Length = 979

 Score =  371 bits (953), Expect = e-103
 Identities = 188/263 (71%), Positives = 212/263 (80%), Gaps = 5/263 (1%)
 Frame = +3

Query: 180 MAQVAMSTLPVENEESSDSRMVVTFLVSALESMCKELAKSKAEVACIAMYEADVFVVGTE 359
           MAQVAMSTLPVE+EESS+SRMVVTFL+SALESMCKELAKSKAEVACIA+YE DVFVVGTE
Sbjct: 1   MAQVAMSTLPVEDEESSESRMVVTFLMSALESMCKELAKSKAEVACIAVYETDVFVVGTE 60

Query: 360 KGRAFVNARTDLQKDFAKYCVAEG-----LPEVKPPHPVNGMQIDSGETEILRKAVEDYF 524
           +GRAFVN R D QKDF KYCV E      + ++K   P N M +D+ E E LRK VEDYF
Sbjct: 61  RGRAFVNTRKDFQKDFVKYCVEEEEKAAEMHKMKSTTPANRMSVDAVEIETLRKTVEDYF 120

Query: 525 CFCYGKALGTTAMVPVPYEKLLKDQAAVVVQGLPEGVPFQHPENYDLATLKWILENKAGI 704
           CFCYGKALG + +VPVPYEK+L+DQ+AVVVQGLPEGV F+HPENYDLATLKWILENKAGI
Sbjct: 121 CFCYGKALGKSTVVPVPYEKMLRDQSAVVVQGLPEGVAFKHPENYDLATLKWILENKAGI 180

Query: 705 SFTINRPFLXXXXXXXXXXXXTDAVRSVTSPSESCVPINVKTEPMEDSGISLKAAAVSVK 884
           SF I RPFL            TDA RS+ SP  SC P+ VKTEP EDSGISL+ AAV+VK
Sbjct: 181 SFIIKRPFLEPKKHLGGRVMVTDAERSMLSPGGSCGPVKVKTEPTEDSGISLEMAAVTVK 240

Query: 885 KESEDPNYYQHNMQDSHHSSGSN 953
           +ESEDP+YYQ+N+Q SHHSS  N
Sbjct: 241 EESEDPDYYQYNIQGSHHSSEGN 263



 Score = 60.8 bits (146), Expect = 2e-09
 Identities = 30/77 (38%), Positives = 47/77 (61%)
 Frame = +3

Query: 498  LRKAVEDYFCFCYGKALGTTAMVPVPYEKLLKDQAAVVVQGLPEGVPFQHPENYDLATLK 677
            LR+ V D F   +G+A+G    V VPY K+  +   VVV G+P GV F+ P   ++++++
Sbjct: 849  LREQVNDLFSRKFGEAIGMGFPVKVPYRKITINPGCVVVDGMPPGVSFKAPSYLEISSMR 908

Query: 678  WILENKAGISFTINRPF 728
             IL++   I FT+ RPF
Sbjct: 909  RILDSAEFIKFTVIRPF 925



 Score = 59.3 bits (142), Expect = 5e-09
 Identities = 31/78 (39%), Positives = 44/78 (56%)
 Frame = +3

Query: 498 LRKAVEDYFCFCYGKALGTTAMVPVPYEKLLKDQAAVVVQGLPEGVPFQHPENYDLATLK 677
           LRK V+  FC  + +ALG+T    VPY+K       + V+GLPE +PF+ P  Y +  L+
Sbjct: 446 LRKMVDQLFCKKFAEALGSTEAKAVPYQKFEAHPNDLYVEGLPENIPFRSPSWYGIPRLE 505

Query: 678 WILENKAGISFTINRPFL 731
            I++    I F I RP L
Sbjct: 506 KIIQVGNRIKFVIKRPEL 523



 Score = 56.6 bits (135), Expect = 3e-08
 Identities = 29/78 (37%), Positives = 43/78 (55%)
 Frame = +3

Query: 498 LRKAVEDYFCFCYGKALGTTAMVPVPYEKLLKDQAAVVVQGLPEGVPFQHPENYDLATLK 677
           LRK VE+ F   + +ALG T  V VPY     +   + V+GLPEG+PF+ P  + +  L+
Sbjct: 551 LRKQVEEIFNLKFAQALGLTEAVKVPYPVFESNPEFLYVEGLPEGIPFRSPTWFGIPRLE 610

Query: 678 WILENKAGISFTINRPFL 731
            I+     I F + +P L
Sbjct: 611 RIVRGSNKIKFVVKKPEL 628



 Score = 56.6 bits (135), Expect = 3e-08
 Identities = 31/76 (40%), Positives = 42/76 (55%)
 Frame = +3

Query: 498 LRKAVEDYFCFCYGKALGTTAMVPVPYEKLLKDQAAVVVQGLPEGVPFQHPENYDLATLK 677
           L++ VE+ F    G+ALG    V VP+           V+GLPEGVPF+ P  + +  L+
Sbjct: 713 LKQKVENLFNEKCGEALGLKQAVKVPFALFESFPEDFYVEGLPEGVPFRRPSTFGIPRLE 772

Query: 678 WILENKAGISFTINRP 725
            IL NKA I F I +P
Sbjct: 773 KILRNKAKIKFIIKKP 788



 Score = 52.8 bits (125), Expect = 5e-07
 Identities = 32/107 (29%), Positives = 49/107 (45%), Gaps = 14/107 (13%)
 Frame = +3

Query: 444 KPPHPVNGMQIDSGETEI--------------LRKAVEDYFCFCYGKALGTTAMVPVPYE 581
           +PP P      ++G+ ++              LRK VE+ F   Y +A+     V +PY 
Sbjct: 309 EPPQPAVSEPANAGKRKVREFNFEKWNARITDLRKQVEELFERKYAQAIKAKGPVTIPYP 368

Query: 582 KLLKDQAAVVVQGLPEGVPFQHPENYDLATLKWILENKAGISFTINR 722
                   + V+GLPEG+PF+ P  Y +  L+ IL  K  I F I +
Sbjct: 369 LFQSHVEDLYVEGLPEGIPFRRPSTYGIPRLERILLAKERIRFVIKK 415


>ref|XP_856738.1| PREDICTED: similar to general transcription factor II, i isoform 3
           isoform 8 [Canis familiaris].
          Length = 978

 Score =  360 bits (923), Expect = 1e-99
 Identities = 188/283 (66%), Positives = 212/283 (74%), Gaps = 25/283 (8%)
 Frame = +3

Query: 180 MAQVAMSTLPVENEESSDSRMVVTFLVSALESMCKELAKSKAEVACIAMYEADVFVVGTE 359
           MAQVAMSTLPVE+EESS+SRMVVTFL+SALESMCKELAKSKAEVACIA+YE DVFVVGTE
Sbjct: 1   MAQVAMSTLPVEDEESSESRMVVTFLMSALESMCKELAKSKAEVACIAVYETDVFVVGTE 60

Query: 360 KGRAFVNARTDLQKDFAKYCVAEG-----LPEVKPPHPVNGMQIDSGETEILRKAVEDYF 524
           +GRAFVN R D QKDF KYCV E      + ++K   P N M +D+ E E LRK VEDYF
Sbjct: 61  RGRAFVNTRKDFQKDFVKYCVEEEEKAAEMHKMKSTTPANRMSVDAVEIETLRKTVEDYF 120

Query: 525 CFCYGKALGTTAMVPVPYEKLLKDQAAVVVQGLPEGVPFQHPENYDLATLKWILENKAGI 704
           CFCYGKALG + +VPVPYEK+L+DQ+AVVVQGLPEGV F+HPENYDLATLKWILENKAGI
Sbjct: 121 CFCYGKALGKSTVVPVPYEKMLRDQSAVVVQGLPEGVAFKHPENYDLATLKWILENKAGI 180

Query: 705 SFTINRPFLXXXXXXXXXXXXTDAVRSVTSPSESCVPINVKTEPMEDSGISLKAAAVSVK 884
           SF I RPFL            TDA RS+ SP  SC P+ VKTEP EDSGISL+ AAV+VK
Sbjct: 181 SFIIKRPFLEPKKHLGGRVMVTDAERSMLSPGGSCGPVKVKTEPTEDSGISLEMAAVTVK 240

Query: 885 KESEDPNYYQHN--------------------MQDSHHSSGSN 953
           +ESEDP+YYQ+N                    +Q SHHSS  N
Sbjct: 241 EESEDPDYYQYNIQAGPSENDDVDDKLPLSKSLQGSHHSSEGN 283



 Score = 60.8 bits (146), Expect = 2e-09
 Identities = 30/77 (38%), Positives = 47/77 (61%)
 Frame = +3

Query: 498  LRKAVEDYFCFCYGKALGTTAMVPVPYEKLLKDQAAVVVQGLPEGVPFQHPENYDLATLK 677
            LR+ V D F   +G+A+G    V VPY K+  +   VVV G+P GV F+ P   ++++++
Sbjct: 848  LREQVNDLFSRKFGEAIGMGFPVKVPYRKITINPGCVVVDGMPPGVSFKAPSYLEISSMR 907

Query: 678  WILENKAGISFTINRPF 728
             IL++   I FT+ RPF
Sbjct: 908  RILDSAEFIKFTVIRPF 924



 Score = 59.3 bits (142), Expect = 5e-09
 Identities = 31/78 (39%), Positives = 44/78 (56%)
 Frame = +3

Query: 498 LRKAVEDYFCFCYGKALGTTAMVPVPYEKLLKDQAAVVVQGLPEGVPFQHPENYDLATLK 677
           LRK V+  FC  + +ALG+T    VPY+K       + V+GLPE +PF+ P  Y +  L+
Sbjct: 445 LRKMVDQLFCKKFAEALGSTEAKAVPYQKFEAHPNDLYVEGLPENIPFRSPSWYGIPRLE 504

Query: 678 WILENKAGISFTINRPFL 731
            I++    I F I RP L
Sbjct: 505 KIIQVGNRIKFVIKRPEL 522



 Score = 56.6 bits (135), Expect = 3e-08
 Identities = 29/78 (37%), Positives = 43/78 (55%)
 Frame = +3

Query: 498 LRKAVEDYFCFCYGKALGTTAMVPVPYEKLLKDQAAVVVQGLPEGVPFQHPENYDLATLK 677
           LRK VE+ F   + +ALG T  V VPY     +   + V+GLPEG+PF+ P  + +  L+
Sbjct: 550 LRKQVEEIFNLKFAQALGLTEAVKVPYPVFESNPEFLYVEGLPEGIPFRSPTWFGIPRLE 609

Query: 678 WILENKAGISFTINRPFL 731
            I+     I F + +P L
Sbjct: 610 RIVRGSNKIKFVVKKPEL 627



 Score = 56.6 bits (135), Expect = 3e-08
 Identities = 31/76 (40%), Positives = 42/76 (55%)
 Frame = +3

Query: 498 LRKAVEDYFCFCYGKALGTTAMVPVPYEKLLKDQAAVVVQGLPEGVPFQHPENYDLATLK 677
           L++ VE+ F    G+ALG    V VP+           V+GLPEGVPF+ P  + +  L+
Sbjct: 712 LKQKVENLFNEKCGEALGLKQAVKVPFALFESFPEDFYVEGLPEGVPFRRPSTFGIPRLE 771

Query: 678 WILENKAGISFTINRP 725
            IL NKA I F I +P
Sbjct: 772 KILRNKAKIKFIIKKP 787



 Score = 52.8 bits (125), Expect = 5e-07
 Identities = 32/107 (29%), Positives = 49/107 (45%), Gaps = 14/107 (13%)
 Frame = +3

Query: 444 KPPHPVNGMQIDSGETEI--------------LRKAVEDYFCFCYGKALGTTAMVPVPYE 581
           +PP P      ++G+ ++              LRK VE+ F   Y +A+     V +PY 
Sbjct: 308 EPPQPAVSEPANAGKRKVREFNFEKWNARITDLRKQVEELFERKYAQAIKAKGPVTIPYP 367

Query: 582 KLLKDQAAVVVQGLPEGVPFQHPENYDLATLKWILENKAGISFTINR 722
                   + V+GLPEG+PF+ P  Y +  L+ IL  K  I F I +
Sbjct: 368 LFQSHVEDLYVEGLPEGIPFRRPSTYGIPRLERILLAKERIRFVIKK 414


>ref|XP_848656.1| PREDICTED: similar to general transcription factor II, i isoform 1
           isoform 2 [Canis familiaris].
          Length = 999

 Score =  360 bits (923), Expect = 1e-99
 Identities = 188/283 (66%), Positives = 212/283 (74%), Gaps = 25/283 (8%)
 Frame = +3

Query: 180 MAQVAMSTLPVENEESSDSRMVVTFLVSALESMCKELAKSKAEVACIAMYEADVFVVGTE 359
           MAQVAMSTLPVE+EESS+SRMVVTFL+SALESMCKELAKSKAEVACIA+YE DVFVVGTE
Sbjct: 1   MAQVAMSTLPVEDEESSESRMVVTFLMSALESMCKELAKSKAEVACIAVYETDVFVVGTE 60

Query: 360 KGRAFVNARTDLQKDFAKYCVAEG-----LPEVKPPHPVNGMQIDSGETEILRKAVEDYF 524
           +GRAFVN R D QKDF KYCV E      + ++K   P N M +D+ E E LRK VEDYF
Sbjct: 61  RGRAFVNTRKDFQKDFVKYCVEEEEKAAEMHKMKSTTPANRMSVDAVEIETLRKTVEDYF 120

Query: 525 CFCYGKALGTTAMVPVPYEKLLKDQAAVVVQGLPEGVPFQHPENYDLATLKWILENKAGI 704
           CFCYGKALG + +VPVPYEK+L+DQ+AVVVQGLPEGV F+HPENYDLATLKWILENKAGI
Sbjct: 121 CFCYGKALGKSTVVPVPYEKMLRDQSAVVVQGLPEGVAFKHPENYDLATLKWILENKAGI 180

Query: 705 SFTINRPFLXXXXXXXXXXXXTDAVRSVTSPSESCVPINVKTEPMEDSGISLKAAAVSVK 884
           SF I RPFL            TDA RS+ SP  SC P+ VKTEP EDSGISL+ AAV+VK
Sbjct: 181 SFIIKRPFLEPKKHLGGRVMVTDAERSMLSPGGSCGPVKVKTEPTEDSGISLEMAAVTVK 240

Query: 885 KESEDPNYYQHN--------------------MQDSHHSSGSN 953
           +ESEDP+YYQ+N                    +Q SHHSS  N
Sbjct: 241 EESEDPDYYQYNIQAGPSENDDVDDKLPLSKSLQGSHHSSEGN 283



 Score = 60.8 bits (146), Expect = 2e-09
 Identities = 30/77 (38%), Positives = 47/77 (61%)
 Frame = +3

Query: 498  LRKAVEDYFCFCYGKALGTTAMVPVPYEKLLKDQAAVVVQGLPEGVPFQHPENYDLATLK 677
            LR+ V D F   +G+A+G    V VPY K+  +   VVV G+P GV F+ P   ++++++
Sbjct: 869  LREQVNDLFSRKFGEAIGMGFPVKVPYRKITINPGCVVVDGMPPGVSFKAPSYLEISSMR 928

Query: 678  WILENKAGISFTINRPF 728
             IL++   I FT+ RPF
Sbjct: 929  RILDSAEFIKFTVIRPF 945



 Score = 59.3 bits (142), Expect = 5e-09
 Identities = 31/78 (39%), Positives = 44/78 (56%)
 Frame = +3

Query: 498 LRKAVEDYFCFCYGKALGTTAMVPVPYEKLLKDQAAVVVQGLPEGVPFQHPENYDLATLK 677
           LRK V+  FC  + +ALG+T    VPY+K       + V+GLPE +PF+ P  Y +  L+
Sbjct: 466 LRKMVDQLFCKKFAEALGSTEAKAVPYQKFEAHPNDLYVEGLPENIPFRSPSWYGIPRLE 525

Query: 678 WILENKAGISFTINRPFL 731
            I++    I F I RP L
Sbjct: 526 KIIQVGNRIKFVIKRPEL 543



 Score = 56.6 bits (135), Expect = 3e-08
 Identities = 29/78 (37%), Positives = 43/78 (55%)
 Frame = +3

Query: 498 LRKAVEDYFCFCYGKALGTTAMVPVPYEKLLKDQAAVVVQGLPEGVPFQHPENYDLATLK 677
           LRK VE+ F   + +ALG T  V VPY     +   + V+GLPEG+PF+ P  + +  L+
Sbjct: 571 LRKQVEEIFNLKFAQALGLTEAVKVPYPVFESNPEFLYVEGLPEGIPFRSPTWFGIPRLE 630

Query: 678 WILENKAGISFTINRPFL 731
            I+     I F + +P L
Sbjct: 631 RIVRGSNKIKFVVKKPEL 648



 Score = 56.6 bits (135), Expect = 3e-08
 Identities = 31/76 (40%), Positives = 42/76 (55%)
 Frame = +3

Query: 498 LRKAVEDYFCFCYGKALGTTAMVPVPYEKLLKDQAAVVVQGLPEGVPFQHPENYDLATLK 677
           L++ VE+ F    G+ALG    V VP+           V+GLPEGVPF+ P  + +  L+
Sbjct: 733 LKQKVENLFNEKCGEALGLKQAVKVPFALFESFPEDFYVEGLPEGVPFRRPSTFGIPRLE 792

Query: 678 WILENKAGISFTINRP 725
            IL NKA I F I +P
Sbjct: 793 KILRNKAKIKFIIKKP 808



 Score = 52.8 bits (125), Expect = 5e-07
 Identities = 32/107 (29%), Positives = 49/107 (45%), Gaps = 14/107 (13%)
 Frame = +3

Query: 444 KPPHPVNGMQIDSGETEI--------------LRKAVEDYFCFCYGKALGTTAMVPVPYE 581
           +PP P      ++G+ ++              LRK VE+ F   Y +A+     V +PY 
Sbjct: 329 EPPQPAVSEPANAGKRKVREFNFEKWNARITDLRKQVEELFERKYAQAIKAKGPVTIPYP 388

Query: 582 KLLKDQAAVVVQGLPEGVPFQHPENYDLATLKWILENKAGISFTINR 722
                   + V+GLPEG+PF+ P  Y +  L+ IL  K  I F I +
Sbjct: 389 LFQSHVEDLYVEGLPEGIPFRRPSTYGIPRLERILLAKERIRFVIKK 435


>ref|XP_856619.1| PREDICTED: similar to general transcription factor II, i isoform 4
           isoform 6 [Canis familiaris].
          Length = 857

 Score =  320 bits (820), Expect = 1e-87
 Identities = 163/228 (71%), Positives = 181/228 (79%), Gaps = 5/228 (2%)
 Frame = +3

Query: 180 MAQVAMSTLPVENEESSDSRMVVTFLVSALESMCKELAKSKAEVACIAMYEADVFVVGTE 359
           MAQVAMSTLPVE+EESS+SRMVVTFL+SALESMCKELAKSKAEVACIA+YE DVFVVGTE
Sbjct: 1   MAQVAMSTLPVEDEESSESRMVVTFLMSALESMCKELAKSKAEVACIAVYETDVFVVGTE 60

Query: 360 KGRAFVNARTDLQKDFAKYCVAEG-----LPEVKPPHPVNGMQIDSGETEILRKAVEDYF 524
           +GRAFVN R D QKDF KYCV E      + ++K   P N M +D+ E E LRK VEDYF
Sbjct: 61  RGRAFVNTRKDFQKDFVKYCVEEEEKAAEMHKMKSTTPANRMSVDAVEIETLRKTVEDYF 120

Query: 525 CFCYGKALGTTAMVPVPYEKLLKDQAAVVVQGLPEGVPFQHPENYDLATLKWILENKAGI 704
           CFCYGKALG + +VPVPYEK+L+DQ+AVVVQGLPEGV F+HPENYDLATLKWILENKAGI
Sbjct: 121 CFCYGKALGKSTVVPVPYEKMLRDQSAVVVQGLPEGVAFKHPENYDLATLKWILENKAGI 180

Query: 705 SFTINRPFLXXXXXXXXXXXXTDAVRSVTSPSESCVPINVKTEPMEDS 848
           SF I RPFL            TDA RS+ SP  SC P+ VKTEP EDS
Sbjct: 181 SFIIKRPFLEPKKHLGGRVMVTDAERSMLSPGGSCGPVKVKTEPTEDS 228



 Score = 59.3 bits (142), Expect = 5e-09
 Identities = 31/78 (39%), Positives = 44/78 (56%)
 Frame = +3

Query: 498 LRKAVEDYFCFCYGKALGTTAMVPVPYEKLLKDQAAVVVQGLPEGVPFQHPENYDLATLK 677
           LRK V+  FC  + +ALG+T    VPY+K       + V+GLPE +PF+ P  Y +  L+
Sbjct: 380 LRKMVDQLFCKKFAEALGSTEAKAVPYQKFEAHPNDLYVEGLPENIPFRSPSWYGIPRLE 439

Query: 678 WILENKAGISFTINRPFL 731
            I++    I F I RP L
Sbjct: 440 KIIQVGNRIKFVIKRPEL 457



 Score = 56.6 bits (135), Expect = 3e-08
 Identities = 29/78 (37%), Positives = 43/78 (55%)
 Frame = +3

Query: 498 LRKAVEDYFCFCYGKALGTTAMVPVPYEKLLKDQAAVVVQGLPEGVPFQHPENYDLATLK 677
           LRK VE+ F   + +ALG T  V VPY     +   + V+GLPEG+PF+ P  + +  L+
Sbjct: 485 LRKQVEEIFNLKFAQALGLTEAVKVPYPVFESNPEFLYVEGLPEGIPFRSPTWFGIPRLE 544

Query: 678 WILENKAGISFTINRPFL 731
            I+     I F + +P L
Sbjct: 545 RIVRGSNKIKFVVKKPEL 562



 Score = 56.6 bits (135), Expect = 3e-08
 Identities = 31/76 (40%), Positives = 42/76 (55%)
 Frame = +3

Query: 498 LRKAVEDYFCFCYGKALGTTAMVPVPYEKLLKDQAAVVVQGLPEGVPFQHPENYDLATLK 677
           L++ VE+ F    G+ALG    V VP+           V+GLPEGVPF+ P  + +  L+
Sbjct: 647 LKQKVENLFNEKCGEALGLKQAVKVPFALFESFPEDFYVEGLPEGVPFRRPSTFGIPRLE 706

Query: 678 WILENKAGISFTINRP 725
            IL NKA I F I +P
Sbjct: 707 KILRNKAKIKFIIKKP 722



 Score = 55.8 bits (133), Expect = 6e-08
 Identities = 28/75 (37%), Positives = 45/75 (60%)
 Frame = +3

Query: 498  LRKAVEDYFCFCYGKALGTTAMVPVPYEKLLKDQAAVVVQGLPEGVPFQHPENYDLATLK 677
            LR+ V D F   +G+A+G    V VPY K+  +   VVV G+P GV F+ P   ++++++
Sbjct: 783  LREQVNDLFSRKFGEAIGMGFPVKVPYRKITINPGCVVVDGMPPGVSFKAPSYLEISSMR 842

Query: 678  WILENKAGISFTINR 722
             IL++   I FT+ R
Sbjct: 843  RILDSAEFIKFTVIR 857



 Score = 52.8 bits (125), Expect = 5e-07
 Identities = 32/107 (29%), Positives = 49/107 (45%), Gaps = 14/107 (13%)
 Frame = +3

Query: 444 KPPHPVNGMQIDSGETEI--------------LRKAVEDYFCFCYGKALGTTAMVPVPYE 581
           +PP P      ++G+ ++              LRK VE+ F   Y +A+     V +PY 
Sbjct: 243 EPPQPAVSEPANAGKRKVREFNFEKWNARITDLRKQVEELFERKYAQAIKAKGPVTIPYP 302

Query: 582 KLLKDQAAVVVQGLPEGVPFQHPENYDLATLKWILENKAGISFTINR 722
                   + V+GLPEG+PF+ P  Y +  L+ IL  K  I F I +
Sbjct: 303 LFQSHVEDLYVEGLPEGIPFRRPSTYGIPRLERILLAKERIRFVIKK 349


>ref|XP_848818.1| PREDICTED: similar to GTF2I repeat domain containing 1 isoform 2
           isoform 2 [Canis familiaris].
          Length = 940

 Score =  145 bits (366), Expect = 5e-35
 Identities = 75/174 (43%), Positives = 107/174 (61%), Gaps = 13/174 (7%)
 Frame = +3

Query: 243 VVTFLVSALESMCKELAKSKAEVACIAMYEADVFVVGTEKGRAFVNARTDLQKDFAKYCV 422
           ++T LVSAL+SMC  L+K  AEVAC+A+++   FVVGTEKGR F+NAR +LQ DF ++C 
Sbjct: 30  IITSLVSALDSMCSALSKLNAEVACVAVHDESAFVVGTEKGRMFLNARKELQSDFLRFCR 89

Query: 423 AEGLPEVKPPHPVNGMQIDSG-------------ETEILRKAVEDYFCFCYGKALGTTAM 563
                E +  HP   ++ + G             +  +LRK VE+ F   Y +ALG  ++
Sbjct: 90  GAPWKEPEAEHPKKVLRGEGGGRNIPRSSLEHGSDVYLLRKMVEEVFDVLYSEALGRASV 149

Query: 564 VPVPYEKLLKDQAAVVVQGLPEGVPFQHPENYDLATLKWILENKAGISFTINRP 725
           VP+PYE+LL++   + VQGLPEG+ F+ P +YD   L  ILE+   I F + RP
Sbjct: 150 VPLPYERLLREPGLLAVQGLPEGLAFRRPADYDPKALMAILEHSHRIRFKLKRP 203



 Score = 65.1 bits (157), Expect = 9e-11
 Identities = 34/84 (40%), Positives = 48/84 (57%)
 Frame = +3

Query: 477 DSGETEILRKAVEDYFCFCYGKALGTTAMVPVPYEKLLKDQAAVVVQGLPEGVPFQHPEN 656
           ++ +   LR+ V+  F   Y +ALG   MVPVPY K+  D  AV + G+P+ +PF+ P  
Sbjct: 341 ETEDINTLRECVQILFNSRYAEALGLDHMVPVPYRKIACDPEAVEIVGIPDKIPFKRPCT 400

Query: 657 YDLATLKWILENKAGISFTINRPF 728
           Y +  LK ILE +  I F I R F
Sbjct: 401 YGVPKLKRILEERHSIHFIIKRMF 424



 Score = 63.9 bits (154), Expect = 2e-10
 Identities = 34/86 (39%), Positives = 51/86 (59%)
 Frame = +3

Query: 471 QIDSGETEILRKAVEDYFCFCYGKALGTTAMVPVPYEKLLKDQAAVVVQGLPEGVPFQHP 650
           +ID   T  LR+ V+D F   YG+ALG    V VPY+++  +  +V+++GLP G+PF+ P
Sbjct: 680 RIDIANT--LREQVQDLFNKKYGEALGIKYPVQVPYKRIKSNPGSVIIEGLPPGIPFRKP 737

Query: 651 ENYDLATLKWILENKAGISFTINRPF 728
             +    L+ IL     I FT+ RPF
Sbjct: 738 CTFGSQNLERILAVADKIKFTVTRPF 763



 Score = 59.7 bits (143), Expect = 4e-09
 Identities = 39/99 (39%), Positives = 49/99 (49%)
 Frame = +3

Query: 435 PEVKPPHPVNGMQIDSGETEILRKAVEDYFCFCYGKALGTTAMVPVPYEKLLKDQAAVVV 614
           PE +P    +G  I       LRK VE  F   Y KA+G +  V VPY K L     + V
Sbjct: 546 PEERPMEDSHGDVIRP-----LRKQVELLFNTRYAKAIGISEPVKVPYSKFLMYPEELFV 600

Query: 615 QGLPEGVPFQHPENYDLATLKWILENKAGISFTINRPFL 731
            GLPEG+  + P  + +A L+ ILE    I F I RP L
Sbjct: 601 VGLPEGISLRRPNCFGIAKLRKILEASNSIQFVIKRPEL 639



 Score = 58.5 bits (140), Expect = 9e-09
 Identities = 31/78 (39%), Positives = 46/78 (58%)
 Frame = +3

Query: 483  GETEILRKAVEDYFCFCYGKALGTTAMVPVPYEKLLKDQAAVVVQGLPEGVPFQHPENYD 662
            GE  ILR+ V++ F   YG+ALG    V VPY+ +     AV V GLP+ +PF++P  YD
Sbjct: 779  GEKVILREQVKELFNEKYGEALGLNRPVLVPYKLIRDSPDAVEVTGLPDDIPFRNPNTYD 838

Query: 663  LATLKWILENKAGISFTI 716
            +  L+ IL+ +  +   I
Sbjct: 839  IHRLEKILKAREHVRMVI 856


  Database: RefSeq49_CP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 18,874,504
  Number of sequences in database:  33,336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 39,311,591
Number of extensions: 1104538
Number of successful extensions: 4348
Number of sequences better than 1.0e-05: 16
Number of HSP's gapped: 4326
Number of HSP's successfully gapped: 74
Length of query: 318
Length of database: 18,874,504
Length adjustment: 103
Effective length of query: 215
Effective length of database: 15,440,896
Effective search space: 3319792640
Effective search space used: 3319792640
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-004236
         (955 letters)

Database: RefSeq49_HP.fasta 
           32,964 sequences; 18,297,164 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|NP_001003795.1| general transcription factor II-I repeat dom...   429   e-120
Alignment   gi|NP_775808.2| general transcription factor II-I repeat domain...   429   e-120
Alignment   gi|NP_127493.1| general transcription factor II-I isoform 2 [Ho...   369   e-102
Alignment   gi|NP_001509.3| general transcription factor II-I isoform 4 [Ho...   369   e-102
Alignment   gi|NP_001157108.1| general transcription factor II-I isoform 5 ...   358   5e-99
Alignment   gi|NP_127494.1| general transcription factor II-I isoform 3 [Ho...   357   7e-99
Alignment   gi|NP_127492.1| general transcription factor II-I isoform 1 [Ho...   357   7e-99
Alignment   gi|NP_005676.3| general transcription factor II-I repeat domain...   143   3e-34
Alignment   gi|NP_057412.1| general transcription factor II-I repeat domain...   143   3e-34
Alignment   gi|NP_001186136.1| general transcription factor II-I repeat dom...   134   2e-31

>ref|NP_001003795.1| general transcription factor II-I repeat domain-containing protein
           2B [Homo sapiens].
          Length = 949

 Score =  429 bits (1103), Expect = e-120
 Identities = 217/258 (84%), Positives = 228/258 (88%)
 Frame = +3

Query: 180 MAQVAMSTLPVENEESSDSRMVVTFLVSALESMCKELAKSKAEVACIAMYEADVFVVGTE 359
           MAQVA+STLPVE E SS++RMVVTFLVSALESMCKELAKSKAEVACIA+YE DVFVVGTE
Sbjct: 1   MAQVAVSTLPVEEESSSETRMVVTFLVSALESMCKELAKSKAEVACIAVYETDVFVVGTE 60

Query: 360 KGRAFVNARTDLQKDFAKYCVAEGLPEVKPPHPVNGMQIDSGETEILRKAVEDYFCFCYG 539
           +G AFVNARTD QKDFAKYCVAEGL EVKPP PVNGMQ+ SGETEILRKAVEDYFCFCYG
Sbjct: 61  RGCAFVNARTDFQKDFAKYCVAEGLCEVKPPCPVNGMQVHSGETEILRKAVEDYFCFCYG 120

Query: 540 KALGTTAMVPVPYEKLLKDQAAVVVQGLPEGVPFQHPENYDLATLKWILENKAGISFTIN 719
           KALGTT MVPVPYEK+L+DQ+AVVVQGLPEGV FQHPENYDLATLKWILENKAGISF IN
Sbjct: 121 KALGTTVMVPVPYEKMLRDQSAVVVQGLPEGVAFQHPENYDLATLKWILENKAGISFIIN 180

Query: 720 RPFLXXXXXXXXXXXXTDAVRSVTSPSESCVPINVKTEPMEDSGISLKAAAVSVKKESED 899
           RPFL            TDA RS+ SPSESC PINVKTEPMEDSGISLKA AVSVKKESED
Sbjct: 181 RPFLGPESQLGGPGMVTDAERSIVSPSESCGPINVKTEPMEDSGISLKAEAVSVKKESED 240

Query: 900 PNYYQHNMQDSHHSSGSN 953
           PNYYQ+NMQ SH SS SN
Sbjct: 241 PNYYQYNMQGSHPSSTSN 258



 Score = 57.8 bits (138), Expect = 1e-08
 Identities = 29/76 (38%), Positives = 45/76 (59%)
 Frame = +3

Query: 498 LRKAVEDYFCFCYGKALGTTAMVPVPYEKLLKDQAAVVVQGLPEGVPFQHPENYDLATLK 677
           LR+ V D F   +G+A+G    V VPY K+  +   VV+ G+P GV F+ P   ++++++
Sbjct: 332 LREQVNDLFSRKFGEAIGVDFPVKVPYRKITFNPGCVVIDGMPPGVVFKAPGYLEISSMR 391

Query: 678 WILENKAGISFTINRP 725
            ILE    I FT+ RP
Sbjct: 392 RILEAAEFIKFTVIRP 407


>ref|NP_775808.2| general transcription factor II-I repeat domain-containing protein
           2A [Homo sapiens].
          Length = 949

 Score =  429 bits (1103), Expect = e-120
 Identities = 217/258 (84%), Positives = 228/258 (88%)
 Frame = +3

Query: 180 MAQVAMSTLPVENEESSDSRMVVTFLVSALESMCKELAKSKAEVACIAMYEADVFVVGTE 359
           MAQVA+STLPVE E SS++RMVVTFLVSALESMCKELAKSKAEVACIA+YE DVFVVGTE
Sbjct: 1   MAQVAVSTLPVEEESSSETRMVVTFLVSALESMCKELAKSKAEVACIAVYETDVFVVGTE 60

Query: 360 KGRAFVNARTDLQKDFAKYCVAEGLPEVKPPHPVNGMQIDSGETEILRKAVEDYFCFCYG 539
           +G AFVNARTD QKDFAKYCVAEGL EVKPP PVNGMQ+ SGETEILRKAVEDYFCFCYG
Sbjct: 61  RGCAFVNARTDFQKDFAKYCVAEGLCEVKPPCPVNGMQVHSGETEILRKAVEDYFCFCYG 120

Query: 540 KALGTTAMVPVPYEKLLKDQAAVVVQGLPEGVPFQHPENYDLATLKWILENKAGISFTIN 719
           KALGTT MVPVPYEK+L+DQ+AVVVQGLPEGV FQHPENYDLATLKWILENKAGISF IN
Sbjct: 121 KALGTTVMVPVPYEKMLRDQSAVVVQGLPEGVAFQHPENYDLATLKWILENKAGISFIIN 180

Query: 720 RPFLXXXXXXXXXXXXTDAVRSVTSPSESCVPINVKTEPMEDSGISLKAAAVSVKKESED 899
           RPFL            TDA RS+ SPSESC PINVKTEPMEDSGISLKA AVSVKKESED
Sbjct: 181 RPFLGPESQLGGPGMVTDAERSIVSPSESCGPINVKTEPMEDSGISLKAEAVSVKKESED 240

Query: 900 PNYYQHNMQDSHHSSGSN 953
           PNYYQ+NMQ SH SS SN
Sbjct: 241 PNYYQYNMQGSHPSSTSN 258



 Score = 57.8 bits (138), Expect = 1e-08
 Identities = 29/76 (38%), Positives = 45/76 (59%)
 Frame = +3

Query: 498 LRKAVEDYFCFCYGKALGTTAMVPVPYEKLLKDQAAVVVQGLPEGVPFQHPENYDLATLK 677
           LR+ V D F   +G+A+G    V VPY K+  +   VV+ G+P GV F+ P   ++++++
Sbjct: 332 LREQVNDLFSRKFGEAIGVDFPVKVPYRKITFNPGCVVIDGMPPGVVFKAPGYLEISSMR 391

Query: 678 WILENKAGISFTINRP 725
            ILE    I FT+ RP
Sbjct: 392 RILEAAEFIKFTVIRP 407


>ref|NP_127493.1| general transcription factor II-I isoform 2 [Homo sapiens].
          Length = 978

 Score =  369 bits (947), Expect = e-102
 Identities = 188/263 (71%), Positives = 211/263 (80%), Gaps = 5/263 (1%)
 Frame = +3

Query: 180 MAQVAMSTLPVENEESSDSRMVVTFLVSALESMCKELAKSKAEVACIAMYEADVFVVGTE 359
           MAQVAMSTLPVE+EESS+SRMVVTFL+SALESMCKELAKSKAEVACIA+YE DVFVVGTE
Sbjct: 1   MAQVAMSTLPVEDEESSESRMVVTFLMSALESMCKELAKSKAEVACIAVYETDVFVVGTE 60

Query: 360 KGRAFVNARTDLQKDFAKYCVAEG-----LPEVKPPHPVNGMQIDSGETEILRKAVEDYF 524
           +GRAFVN R D QKDF KYCV E      + ++K     N M +D+ E E LRK VEDYF
Sbjct: 61  RGRAFVNTRKDFQKDFVKYCVEEEEKAAEMHKMKSTTQANRMSVDAVEIETLRKTVEDYF 120

Query: 525 CFCYGKALGTTAMVPVPYEKLLKDQAAVVVQGLPEGVPFQHPENYDLATLKWILENKAGI 704
           CFCYGKALG + +VPVPYEK+L+DQ+AVVVQGLPEGV F+HPENYDLATLKWILENKAGI
Sbjct: 121 CFCYGKALGKSTVVPVPYEKMLRDQSAVVVQGLPEGVAFKHPENYDLATLKWILENKAGI 180

Query: 705 SFTINRPFLXXXXXXXXXXXXTDAVRSVTSPSESCVPINVKTEPMEDSGISLKAAAVSVK 884
           SF I RPFL            TDA RS+ SP  SC PI VKTEP EDSGISL+ AAV+VK
Sbjct: 181 SFIIKRPFLEPKKHVGGRVMVTDADRSILSPGGSCGPIKVKTEPTEDSGISLEMAAVTVK 240

Query: 885 KESEDPNYYQHNMQDSHHSSGSN 953
           +ESEDP+YYQ+N+Q SHHSS  N
Sbjct: 241 EESEDPDYYQYNIQGSHHSSEGN 263



 Score = 60.8 bits (146), Expect = 2e-09
 Identities = 30/77 (38%), Positives = 47/77 (61%)
 Frame = +3

Query: 498  LRKAVEDYFCFCYGKALGTTAMVPVPYEKLLKDQAAVVVQGLPEGVPFQHPENYDLATLK 677
            LR+ V D F   +G+A+G    V VPY K+  +   VVV G+P GV F+ P   ++++++
Sbjct: 848  LREQVNDLFSRKFGEAIGMGFPVKVPYRKITINPGCVVVDGMPPGVSFKAPSYLEISSMR 907

Query: 678  WILENKAGISFTINRPF 728
             IL++   I FT+ RPF
Sbjct: 908  RILDSAEFIKFTVIRPF 924



 Score = 59.3 bits (142), Expect = 5e-09
 Identities = 31/78 (39%), Positives = 44/78 (56%)
 Frame = +3

Query: 498 LRKAVEDYFCFCYGKALGTTAMVPVPYEKLLKDQAAVVVQGLPEGVPFQHPENYDLATLK 677
           LRK V+  FC  + +ALG+T    VPY+K       + V+GLPE +PF+ P  Y +  L+
Sbjct: 446 LRKMVDQLFCKKFAEALGSTEAKAVPYQKFEAHPNDLYVEGLPENIPFRSPSWYGIPRLE 505

Query: 678 WILENKAGISFTINRPFL 731
            I++    I F I RP L
Sbjct: 506 KIIQVGNRIKFVIKRPEL 523



 Score = 56.6 bits (135), Expect = 3e-08
 Identities = 29/78 (37%), Positives = 43/78 (55%)
 Frame = +3

Query: 498 LRKAVEDYFCFCYGKALGTTAMVPVPYEKLLKDQAAVVVQGLPEGVPFQHPENYDLATLK 677
           LRK VE+ F   + +ALG T  V VPY     +   + V+GLPEG+PF+ P  + +  L+
Sbjct: 551 LRKQVEEIFNLKFAQALGLTEAVKVPYPVFESNPEFLYVEGLPEGIPFRSPTWFGIPRLE 610

Query: 678 WILENKAGISFTINRPFL 731
            I+     I F + +P L
Sbjct: 611 RIVRGSNKIKFVVKKPEL 628



 Score = 56.6 bits (135), Expect = 3e-08
 Identities = 31/76 (40%), Positives = 42/76 (55%)
 Frame = +3

Query: 498 LRKAVEDYFCFCYGKALGTTAMVPVPYEKLLKDQAAVVVQGLPEGVPFQHPENYDLATLK 677
           L++ VE+ F    G+ALG    V VP+           V+GLPEGVPF+ P  + +  L+
Sbjct: 713 LKQKVENLFNEKCGEALGLKQAVKVPFALFESFPEDFYVEGLPEGVPFRRPSTFGIPRLE 772

Query: 678 WILENKAGISFTINRP 725
            IL NKA I F I +P
Sbjct: 773 KILRNKAKIKFIIKKP 788



 Score = 53.1 bits (126), Expect = 4e-07
 Identities = 35/109 (32%), Positives = 48/109 (44%), Gaps = 9/109 (8%)
 Frame = +3

Query: 423 AEGLPEVKPPHPVNGMQIDSGETEI---------LRKAVEDYFCFCYGKALGTTAMVPVP 575
           A  LP+   P P N  +    E            LRK VE+ F   Y +A+     V +P
Sbjct: 307 ANELPQPPVPEPANAGKRKVREFNFEKWNARITDLRKQVEELFERKYAQAIKAKGPVTIP 366

Query: 576 YEKLLKDQAAVVVQGLPEGVPFQHPENYDLATLKWILENKAGISFTINR 722
           Y         + V+GLPEG+PF+ P  Y +  L+ IL  K  I F I +
Sbjct: 367 YPLFQSHVEDLYVEGLPEGIPFRRPSTYGIPRLERILLAKERIRFVIKK 415


>ref|NP_001509.3| general transcription factor II-I isoform 4 [Homo sapiens].
          Length = 957

 Score =  369 bits (947), Expect = e-102
 Identities = 188/263 (71%), Positives = 211/263 (80%), Gaps = 5/263 (1%)
 Frame = +3

Query: 180 MAQVAMSTLPVENEESSDSRMVVTFLVSALESMCKELAKSKAEVACIAMYEADVFVVGTE 359
           MAQVAMSTLPVE+EESS+SRMVVTFL+SALESMCKELAKSKAEVACIA+YE DVFVVGTE
Sbjct: 1   MAQVAMSTLPVEDEESSESRMVVTFLMSALESMCKELAKSKAEVACIAVYETDVFVVGTE 60

Query: 360 KGRAFVNARTDLQKDFAKYCVAEG-----LPEVKPPHPVNGMQIDSGETEILRKAVEDYF 524
           +GRAFVN R D QKDF KYCV E      + ++K     N M +D+ E E LRK VEDYF
Sbjct: 61  RGRAFVNTRKDFQKDFVKYCVEEEEKAAEMHKMKSTTQANRMSVDAVEIETLRKTVEDYF 120

Query: 525 CFCYGKALGTTAMVPVPYEKLLKDQAAVVVQGLPEGVPFQHPENYDLATLKWILENKAGI 704
           CFCYGKALG + +VPVPYEK+L+DQ+AVVVQGLPEGV F+HPENYDLATLKWILENKAGI
Sbjct: 121 CFCYGKALGKSTVVPVPYEKMLRDQSAVVVQGLPEGVAFKHPENYDLATLKWILENKAGI 180

Query: 705 SFTINRPFLXXXXXXXXXXXXTDAVRSVTSPSESCVPINVKTEPMEDSGISLKAAAVSVK 884
           SF I RPFL            TDA RS+ SP  SC PI VKTEP EDSGISL+ AAV+VK
Sbjct: 181 SFIIKRPFLEPKKHVGGRVMVTDADRSILSPGGSCGPIKVKTEPTEDSGISLEMAAVTVK 240

Query: 885 KESEDPNYYQHNMQDSHHSSGSN 953
           +ESEDP+YYQ+N+Q SHHSS  N
Sbjct: 241 EESEDPDYYQYNIQGSHHSSEGN 263



 Score = 60.8 bits (146), Expect = 2e-09
 Identities = 30/77 (38%), Positives = 47/77 (61%)
 Frame = +3

Query: 498  LRKAVEDYFCFCYGKALGTTAMVPVPYEKLLKDQAAVVVQGLPEGVPFQHPENYDLATLK 677
            LR+ V D F   +G+A+G    V VPY K+  +   VVV G+P GV F+ P   ++++++
Sbjct: 827  LREQVNDLFSRKFGEAIGMGFPVKVPYRKITINPGCVVVDGMPPGVSFKAPSYLEISSMR 886

Query: 678  WILENKAGISFTINRPF 728
             IL++   I FT+ RPF
Sbjct: 887  RILDSAEFIKFTVIRPF 903



 Score = 59.3 bits (142), Expect = 5e-09
 Identities = 31/78 (39%), Positives = 44/78 (56%)
 Frame = +3

Query: 498 LRKAVEDYFCFCYGKALGTTAMVPVPYEKLLKDQAAVVVQGLPEGVPFQHPENYDLATLK 677
           LRK V+  FC  + +ALG+T    VPY+K       + V+GLPE +PF+ P  Y +  L+
Sbjct: 425 LRKMVDQLFCKKFAEALGSTEAKAVPYQKFEAHPNDLYVEGLPENIPFRSPSWYGIPRLE 484

Query: 678 WILENKAGISFTINRPFL 731
            I++    I F I RP L
Sbjct: 485 KIIQVGNRIKFVIKRPEL 502



 Score = 56.6 bits (135), Expect = 3e-08
 Identities = 29/78 (37%), Positives = 43/78 (55%)
 Frame = +3

Query: 498 LRKAVEDYFCFCYGKALGTTAMVPVPYEKLLKDQAAVVVQGLPEGVPFQHPENYDLATLK 677
           LRK VE+ F   + +ALG T  V VPY     +   + V+GLPEG+PF+ P  + +  L+
Sbjct: 530 LRKQVEEIFNLKFAQALGLTEAVKVPYPVFESNPEFLYVEGLPEGIPFRSPTWFGIPRLE 589

Query: 678 WILENKAGISFTINRPFL 731
            I+     I F + +P L
Sbjct: 590 RIVRGSNKIKFVVKKPEL 607



 Score = 56.6 bits (135), Expect = 3e-08
 Identities = 31/76 (40%), Positives = 42/76 (55%)
 Frame = +3

Query: 498 LRKAVEDYFCFCYGKALGTTAMVPVPYEKLLKDQAAVVVQGLPEGVPFQHPENYDLATLK 677
           L++ VE+ F    G+ALG    V VP+           V+GLPEGVPF+ P  + +  L+
Sbjct: 692 LKQKVENLFNEKCGEALGLKQAVKVPFALFESFPEDFYVEGLPEGVPFRRPSTFGIPRLE 751

Query: 678 WILENKAGISFTINRP 725
            IL NKA I F I +P
Sbjct: 752 KILRNKAKIKFIIKKP 767



 Score = 54.3 bits (129), Expect = 2e-07
 Identities = 41/133 (30%), Positives = 55/133 (41%), Gaps = 9/133 (6%)
 Frame = +3

Query: 351 GTEKGRAFVNARTDLQKDFAKYCVAEGLPEVKPPHPVNGMQIDSGETEI---------LR 503
           G E     V A  D     +K   A  LP+   P P N  +    E            LR
Sbjct: 262 GNEGTEMEVPAEDDDYSPPSKRPKANELPQPPVPEPANAGKRKVREFNFEKWNARITDLR 321

Query: 504 KAVEDYFCFCYGKALGTTAMVPVPYEKLLKDQAAVVVQGLPEGVPFQHPENYDLATLKWI 683
           K VE+ F   Y +A+     V +PY         + V+GLPEG+PF+ P  Y +  L+ I
Sbjct: 322 KQVEELFERKYAQAIKAKGPVTIPYPLFQSHVEDLYVEGLPEGIPFRRPSTYGIPRLERI 381

Query: 684 LENKAGISFTINR 722
           L  K  I F I +
Sbjct: 382 LLAKERIRFVIKK 394


>ref|NP_001157108.1| general transcription factor II-I isoform 5 [Homo sapiens].
          Length = 976

 Score =  358 bits (918), Expect = 5e-99
 Identities = 188/282 (66%), Positives = 211/282 (74%), Gaps = 24/282 (8%)
 Frame = +3

Query: 180 MAQVAMSTLPVENEESSDSRMVVTFLVSALESMCKELAKSKAEVACIAMYEADVFVVGTE 359
           MAQVAMSTLPVE+EESS+SRMVVTFL+SALESMCKELAKSKAEVACIA+YE DVFVVGTE
Sbjct: 1   MAQVAMSTLPVEDEESSESRMVVTFLMSALESMCKELAKSKAEVACIAVYETDVFVVGTE 60

Query: 360 KGRAFVNARTDLQKDFAKYCVAEG-----LPEVKPPHPVNGMQIDSGETEILRKAVEDYF 524
           +GRAFVN R D QKDF KYCV E      + ++K     N M +D+ E E LRK VEDYF
Sbjct: 61  RGRAFVNTRKDFQKDFVKYCVEEEEKAAEMHKMKSTTQANRMSVDAVEIETLRKTVEDYF 120

Query: 525 CFCYGKALGTTAMVPVPYEKLLKDQAAVVVQGLPEGVPFQHPENYDLATLKWILENKAGI 704
           CFCYGKALG + +VPVPYEK+L+DQ+AVVVQGLPEGV F+HPENYDLATLKWILENKAGI
Sbjct: 121 CFCYGKALGKSTVVPVPYEKMLRDQSAVVVQGLPEGVAFKHPENYDLATLKWILENKAGI 180

Query: 705 SFTINRPFLXXXXXXXXXXXXTDAVRSVTSPSESCVPINVKTEPMEDSGISLKAAAVSVK 884
           SF I RPFL            TDA RS+ SP  SC PI VKTEP EDSGISL+ AAV+VK
Sbjct: 181 SFIIKRPFLEPKKHVGGRVMVTDADRSILSPGGSCGPIKVKTEPTEDSGISLEMAAVTVK 240

Query: 885 KESEDPNYYQHN-------------------MQDSHHSSGSN 953
           +ESEDP+YYQ+N                   +Q SHHSS  N
Sbjct: 241 EESEDPDYYQYNIQGPSETDDVDEKQPLSKPLQGSHHSSEGN 282



 Score = 60.8 bits (146), Expect = 2e-09
 Identities = 30/77 (38%), Positives = 47/77 (61%)
 Frame = +3

Query: 498  LRKAVEDYFCFCYGKALGTTAMVPVPYEKLLKDQAAVVVQGLPEGVPFQHPENYDLATLK 677
            LR+ V D F   +G+A+G    V VPY K+  +   VVV G+P GV F+ P   ++++++
Sbjct: 846  LREQVNDLFSRKFGEAIGMGFPVKVPYRKITINPGCVVVDGMPPGVSFKAPSYLEISSMR 905

Query: 678  WILENKAGISFTINRPF 728
             IL++   I FT+ RPF
Sbjct: 906  RILDSAEFIKFTVIRPF 922



 Score = 59.3 bits (142), Expect = 5e-09
 Identities = 31/78 (39%), Positives = 44/78 (56%)
 Frame = +3

Query: 498 LRKAVEDYFCFCYGKALGTTAMVPVPYEKLLKDQAAVVVQGLPEGVPFQHPENYDLATLK 677
           LRK V+  FC  + +ALG+T    VPY+K       + V+GLPE +PF+ P  Y +  L+
Sbjct: 444 LRKMVDQLFCKKFAEALGSTEAKAVPYQKFEAHPNDLYVEGLPENIPFRSPSWYGIPRLE 503

Query: 678 WILENKAGISFTINRPFL 731
            I++    I F I RP L
Sbjct: 504 KIIQVGNRIKFVIKRPEL 521



 Score = 56.6 bits (135), Expect = 3e-08
 Identities = 29/78 (37%), Positives = 43/78 (55%)
 Frame = +3

Query: 498 LRKAVEDYFCFCYGKALGTTAMVPVPYEKLLKDQAAVVVQGLPEGVPFQHPENYDLATLK 677
           LRK VE+ F   + +ALG T  V VPY     +   + V+GLPEG+PF+ P  + +  L+
Sbjct: 549 LRKQVEEIFNLKFAQALGLTEAVKVPYPVFESNPEFLYVEGLPEGIPFRSPTWFGIPRLE 608

Query: 678 WILENKAGISFTINRPFL 731
            I+     I F + +P L
Sbjct: 609 RIVRGSNKIKFVVKKPEL 626



 Score = 56.6 bits (135), Expect = 3e-08
 Identities = 31/76 (40%), Positives = 42/76 (55%)
 Frame = +3

Query: 498 LRKAVEDYFCFCYGKALGTTAMVPVPYEKLLKDQAAVVVQGLPEGVPFQHPENYDLATLK 677
           L++ VE+ F    G+ALG    V VP+           V+GLPEGVPF+ P  + +  L+
Sbjct: 711 LKQKVENLFNEKCGEALGLKQAVKVPFALFESFPEDFYVEGLPEGVPFRRPSTFGIPRLE 770

Query: 678 WILENKAGISFTINRP 725
            IL NKA I F I +P
Sbjct: 771 KILRNKAKIKFIIKKP 786



 Score = 54.3 bits (129), Expect = 2e-07
 Identities = 41/133 (30%), Positives = 55/133 (41%), Gaps = 9/133 (6%)
 Frame = +3

Query: 351 GTEKGRAFVNARTDLQKDFAKYCVAEGLPEVKPPHPVNGMQIDSGETEI---------LR 503
           G E     V A  D     +K   A  LP+   P P N  +    E            LR
Sbjct: 281 GNEGTEMEVPAEDDDYSPPSKRPKANELPQPPVPEPANAGKRKVREFNFEKWNARITDLR 340

Query: 504 KAVEDYFCFCYGKALGTTAMVPVPYEKLLKDQAAVVVQGLPEGVPFQHPENYDLATLKWI 683
           K VE+ F   Y +A+     V +PY         + V+GLPEG+PF+ P  Y +  L+ I
Sbjct: 341 KQVEELFERKYAQAIKAKGPVTIPYPLFQSHVEDLYVEGLPEGIPFRRPSTYGIPRLERI 400

Query: 684 LENKAGISFTINR 722
           L  K  I F I +
Sbjct: 401 LLAKERIRFVIKK 413


>ref|NP_127494.1| general transcription factor II-I isoform 3 [Homo sapiens].
          Length = 977

 Score =  357 bits (917), Expect = 7e-99
 Identities = 188/283 (66%), Positives = 211/283 (74%), Gaps = 25/283 (8%)
 Frame = +3

Query: 180 MAQVAMSTLPVENEESSDSRMVVTFLVSALESMCKELAKSKAEVACIAMYEADVFVVGTE 359
           MAQVAMSTLPVE+EESS+SRMVVTFL+SALESMCKELAKSKAEVACIA+YE DVFVVGTE
Sbjct: 1   MAQVAMSTLPVEDEESSESRMVVTFLMSALESMCKELAKSKAEVACIAVYETDVFVVGTE 60

Query: 360 KGRAFVNARTDLQKDFAKYCVAEG-----LPEVKPPHPVNGMQIDSGETEILRKAVEDYF 524
           +GRAFVN R D QKDF KYCV E      + ++K     N M +D+ E E LRK VEDYF
Sbjct: 61  RGRAFVNTRKDFQKDFVKYCVEEEEKAAEMHKMKSTTQANRMSVDAVEIETLRKTVEDYF 120

Query: 525 CFCYGKALGTTAMVPVPYEKLLKDQAAVVVQGLPEGVPFQHPENYDLATLKWILENKAGI 704
           CFCYGKALG + +VPVPYEK+L+DQ+AVVVQGLPEGV F+HPENYDLATLKWILENKAGI
Sbjct: 121 CFCYGKALGKSTVVPVPYEKMLRDQSAVVVQGLPEGVAFKHPENYDLATLKWILENKAGI 180

Query: 705 SFTINRPFLXXXXXXXXXXXXTDAVRSVTSPSESCVPINVKTEPMEDSGISLKAAAVSVK 884
           SF I RPFL            TDA RS+ SP  SC PI VKTEP EDSGISL+ AAV+VK
Sbjct: 181 SFIIKRPFLEPKKHVGGRVMVTDADRSILSPGGSCGPIKVKTEPTEDSGISLEMAAVTVK 240

Query: 885 KESEDPNYYQHN--------------------MQDSHHSSGSN 953
           +ESEDP+YYQ+N                    +Q SHHSS  N
Sbjct: 241 EESEDPDYYQYNIQAGPSETDDVDEKQPLSKPLQGSHHSSEGN 283



 Score = 60.8 bits (146), Expect = 2e-09
 Identities = 30/77 (38%), Positives = 47/77 (61%)
 Frame = +3

Query: 498  LRKAVEDYFCFCYGKALGTTAMVPVPYEKLLKDQAAVVVQGLPEGVPFQHPENYDLATLK 677
            LR+ V D F   +G+A+G    V VPY K+  +   VVV G+P GV F+ P   ++++++
Sbjct: 847  LREQVNDLFSRKFGEAIGMGFPVKVPYRKITINPGCVVVDGMPPGVSFKAPSYLEISSMR 906

Query: 678  WILENKAGISFTINRPF 728
             IL++   I FT+ RPF
Sbjct: 907  RILDSAEFIKFTVIRPF 923



 Score = 59.3 bits (142), Expect = 5e-09
 Identities = 31/78 (39%), Positives = 44/78 (56%)
 Frame = +3

Query: 498 LRKAVEDYFCFCYGKALGTTAMVPVPYEKLLKDQAAVVVQGLPEGVPFQHPENYDLATLK 677
           LRK V+  FC  + +ALG+T    VPY+K       + V+GLPE +PF+ P  Y +  L+
Sbjct: 445 LRKMVDQLFCKKFAEALGSTEAKAVPYQKFEAHPNDLYVEGLPENIPFRSPSWYGIPRLE 504

Query: 678 WILENKAGISFTINRPFL 731
            I++    I F I RP L
Sbjct: 505 KIIQVGNRIKFVIKRPEL 522



 Score = 56.6 bits (135), Expect = 3e-08
 Identities = 29/78 (37%), Positives = 43/78 (55%)
 Frame = +3

Query: 498 LRKAVEDYFCFCYGKALGTTAMVPVPYEKLLKDQAAVVVQGLPEGVPFQHPENYDLATLK 677
           LRK VE+ F   + +ALG T  V VPY     +   + V+GLPEG+PF+ P  + +  L+
Sbjct: 550 LRKQVEEIFNLKFAQALGLTEAVKVPYPVFESNPEFLYVEGLPEGIPFRSPTWFGIPRLE 609

Query: 678 WILENKAGISFTINRPFL 731
            I+     I F + +P L
Sbjct: 610 RIVRGSNKIKFVVKKPEL 627



 Score = 56.6 bits (135), Expect = 3e-08
 Identities = 31/76 (40%), Positives = 42/76 (55%)
 Frame = +3

Query: 498 LRKAVEDYFCFCYGKALGTTAMVPVPYEKLLKDQAAVVVQGLPEGVPFQHPENYDLATLK 677
           L++ VE+ F    G+ALG    V VP+           V+GLPEGVPF+ P  + +  L+
Sbjct: 712 LKQKVENLFNEKCGEALGLKQAVKVPFALFESFPEDFYVEGLPEGVPFRRPSTFGIPRLE 771

Query: 678 WILENKAGISFTINRP 725
            IL NKA I F I +P
Sbjct: 772 KILRNKAKIKFIIKKP 787



 Score = 55.8 bits (133), Expect = 6e-08
 Identities = 56/210 (26%), Positives = 81/210 (38%), Gaps = 16/210 (7%)
 Frame = +3

Query: 141 PAGRC-------PPAGTSGIMAQVAMSTLPVENEESSDSRMVVTFLVSALESMCKELAKS 299
           P G C        P   SGI  ++A  T+  E+E+    +  +    S  + + ++   S
Sbjct: 211 PGGSCGPIKVKTEPTEDSGISLEMAAVTVKEESEDPDYYQYNIQAGPSETDDVDEKQPLS 270

Query: 300 KAEVACIAMYEADVFVVGTEKGRAFVNARTDLQKDFAKYCVAEGLPEVKPPHPVNGMQID 479
           K         E      G E     V A  D     +K   A  LP+   P P N  +  
Sbjct: 271 KPLQGSHHSSE------GNEGTEMEVPAEDDDYSPPSKRPKANELPQPPVPEPANAGKRK 324

Query: 480 SGETEI---------LRKAVEDYFCFCYGKALGTTAMVPVPYEKLLKDQAAVVVQGLPEG 632
             E            LRK VE+ F   Y +A+     V +PY         + V+GLPEG
Sbjct: 325 VREFNFEKWNARITDLRKQVEELFERKYAQAIKAKGPVTIPYPLFQSHVEDLYVEGLPEG 384

Query: 633 VPFQHPENYDLATLKWILENKAGISFTINR 722
           +PF+ P  Y +  L+ IL  K  I F I +
Sbjct: 385 IPFRRPSTYGIPRLERILLAKERIRFVIKK 414


>ref|NP_127492.1| general transcription factor II-I isoform 1 [Homo sapiens].
          Length = 998

 Score =  357 bits (917), Expect = 7e-99
 Identities = 188/283 (66%), Positives = 211/283 (74%), Gaps = 25/283 (8%)
 Frame = +3

Query: 180 MAQVAMSTLPVENEESSDSRMVVTFLVSALESMCKELAKSKAEVACIAMYEADVFVVGTE 359
           MAQVAMSTLPVE+EESS+SRMVVTFL+SALESMCKELAKSKAEVACIA+YE DVFVVGTE
Sbjct: 1   MAQVAMSTLPVEDEESSESRMVVTFLMSALESMCKELAKSKAEVACIAVYETDVFVVGTE 60

Query: 360 KGRAFVNARTDLQKDFAKYCVAEG-----LPEVKPPHPVNGMQIDSGETEILRKAVEDYF 524
           +GRAFVN R D QKDF KYCV E      + ++K     N M +D+ E E LRK VEDYF
Sbjct: 61  RGRAFVNTRKDFQKDFVKYCVEEEEKAAEMHKMKSTTQANRMSVDAVEIETLRKTVEDYF 120

Query: 525 CFCYGKALGTTAMVPVPYEKLLKDQAAVVVQGLPEGVPFQHPENYDLATLKWILENKAGI 704
           CFCYGKALG + +VPVPYEK+L+DQ+AVVVQGLPEGV F+HPENYDLATLKWILENKAGI
Sbjct: 121 CFCYGKALGKSTVVPVPYEKMLRDQSAVVVQGLPEGVAFKHPENYDLATLKWILENKAGI 180

Query: 705 SFTINRPFLXXXXXXXXXXXXTDAVRSVTSPSESCVPINVKTEPMEDSGISLKAAAVSVK 884
           SF I RPFL            TDA RS+ SP  SC PI VKTEP EDSGISL+ AAV+VK
Sbjct: 181 SFIIKRPFLEPKKHVGGRVMVTDADRSILSPGGSCGPIKVKTEPTEDSGISLEMAAVTVK 240

Query: 885 KESEDPNYYQHN--------------------MQDSHHSSGSN 953
           +ESEDP+YYQ+N                    +Q SHHSS  N
Sbjct: 241 EESEDPDYYQYNIQAGPSETDDVDEKQPLSKPLQGSHHSSEGN 283



 Score = 60.8 bits (146), Expect = 2e-09
 Identities = 30/77 (38%), Positives = 47/77 (61%)
 Frame = +3

Query: 498  LRKAVEDYFCFCYGKALGTTAMVPVPYEKLLKDQAAVVVQGLPEGVPFQHPENYDLATLK 677
            LR+ V D F   +G+A+G    V VPY K+  +   VVV G+P GV F+ P   ++++++
Sbjct: 868  LREQVNDLFSRKFGEAIGMGFPVKVPYRKITINPGCVVVDGMPPGVSFKAPSYLEISSMR 927

Query: 678  WILENKAGISFTINRPF 728
             IL++   I FT+ RPF
Sbjct: 928  RILDSAEFIKFTVIRPF 944



 Score = 59.3 bits (142), Expect = 5e-09
 Identities = 31/78 (39%), Positives = 44/78 (56%)
 Frame = +3

Query: 498 LRKAVEDYFCFCYGKALGTTAMVPVPYEKLLKDQAAVVVQGLPEGVPFQHPENYDLATLK 677
           LRK V+  FC  + +ALG+T    VPY+K       + V+GLPE +PF+ P  Y +  L+
Sbjct: 466 LRKMVDQLFCKKFAEALGSTEAKAVPYQKFEAHPNDLYVEGLPENIPFRSPSWYGIPRLE 525

Query: 678 WILENKAGISFTINRPFL 731
            I++    I F I RP L
Sbjct: 526 KIIQVGNRIKFVIKRPEL 543



 Score = 56.6 bits (135), Expect = 3e-08
 Identities = 29/78 (37%), Positives = 43/78 (55%)
 Frame = +3

Query: 498 LRKAVEDYFCFCYGKALGTTAMVPVPYEKLLKDQAAVVVQGLPEGVPFQHPENYDLATLK 677
           LRK VE+ F   + +ALG T  V VPY     +   + V+GLPEG+PF+ P  + +  L+
Sbjct: 571 LRKQVEEIFNLKFAQALGLTEAVKVPYPVFESNPEFLYVEGLPEGIPFRSPTWFGIPRLE 630

Query: 678 WILENKAGISFTINRPFL 731
            I+     I F + +P L
Sbjct: 631 RIVRGSNKIKFVVKKPEL 648



 Score = 56.6 bits (135), Expect = 3e-08
 Identities = 31/76 (40%), Positives = 42/76 (55%)
 Frame = +3

Query: 498 LRKAVEDYFCFCYGKALGTTAMVPVPYEKLLKDQAAVVVQGLPEGVPFQHPENYDLATLK 677
           L++ VE+ F    G+ALG    V VP+           V+GLPEGVPF+ P  + +  L+
Sbjct: 733 LKQKVENLFNEKCGEALGLKQAVKVPFALFESFPEDFYVEGLPEGVPFRRPSTFGIPRLE 792

Query: 678 WILENKAGISFTINRP 725
            IL NKA I F I +P
Sbjct: 793 KILRNKAKIKFIIKKP 808



 Score = 53.1 bits (126), Expect = 4e-07
 Identities = 35/109 (32%), Positives = 48/109 (44%), Gaps = 9/109 (8%)
 Frame = +3

Query: 423 AEGLPEVKPPHPVNGMQIDSGETEI---------LRKAVEDYFCFCYGKALGTTAMVPVP 575
           A  LP+   P P N  +    E            LRK VE+ F   Y +A+     V +P
Sbjct: 327 ANELPQPPVPEPANAGKRKVREFNFEKWNARITDLRKQVEELFERKYAQAIKAKGPVTIP 386

Query: 576 YEKLLKDQAAVVVQGLPEGVPFQHPENYDLATLKWILENKAGISFTINR 722
           Y         + V+GLPEG+PF+ P  Y +  L+ IL  K  I F I +
Sbjct: 387 YPLFQSHVEDLYVEGLPEGIPFRRPSTYGIPRLERILLAKERIRFVIKK 435


>ref|NP_005676.3| general transcription factor II-I repeat domain-containing protein
           1 isoform 2 [Homo sapiens].
          Length = 944

 Score =  143 bits (360), Expect = 3e-34
 Identities = 74/174 (42%), Positives = 105/174 (60%), Gaps = 13/174 (7%)
 Frame = +3

Query: 243 VVTFLVSALESMCKELAKSKAEVACIAMYEADVFVVGTEKGRAFVNARTDLQKDFAKYCV 422
           ++T LVSAL+SMC  L+K  AEVAC+A+++   FVVGTEKGR F+NAR +LQ DF ++C 
Sbjct: 30  IITSLVSALDSMCSALSKLNAEVACVAVHDESAFVVGTEKGRMFLNARKELQSDFLRFCR 89

Query: 423 AEGLPEVKPPHPVNGMQIDSG-------------ETEILRKAVEDYFCFCYGKALGTTAM 563
                + +  HP    + + G             +  +LRK VE+ F   Y +ALG  ++
Sbjct: 90  GPPWKDPEAEHPKKVQRGEGGGRSLPRSSLEHGSDVYLLRKMVEEVFDVLYSEALGRASV 149

Query: 564 VPVPYEKLLKDQAAVVVQGLPEGVPFQHPENYDLATLKWILENKAGISFTINRP 725
           VP+PYE+LL++   + VQGLPEG+ F+ P  YD   L  ILE+   I F + RP
Sbjct: 150 VPLPYERLLREPGLLAVQGLPEGLAFRRPAEYDPKALMAILEHSHRIRFKLKRP 203



 Score = 65.1 bits (157), Expect = 9e-11
 Identities = 34/84 (40%), Positives = 48/84 (57%)
 Frame = +3

Query: 477 DSGETEILRKAVEDYFCFCYGKALGTTAMVPVPYEKLLKDQAAVVVQGLPEGVPFQHPEN 656
           ++ +   LR+ V+  F   Y +ALG   MVPVPY K+  D  AV + G+P+ +PF+ P  
Sbjct: 344 ETEDINTLRECVQILFNSRYAEALGLDHMVPVPYRKIACDPEAVEIVGIPDKIPFKRPCT 403

Query: 657 YDLATLKWILENKAGISFTINRPF 728
           Y +  LK ILE +  I F I R F
Sbjct: 404 YGVPKLKRILEERHSIHFIIKRMF 427



 Score = 63.9 bits (154), Expect = 2e-10
 Identities = 34/86 (39%), Positives = 51/86 (59%)
 Frame = +3

Query: 471 QIDSGETEILRKAVEDYFCFCYGKALGTTAMVPVPYEKLLKDQAAVVVQGLPEGVPFQHP 650
           +ID   T  LR+ V+D F   YG+ALG    V VPY+++  +  +V+++GLP G+PF+ P
Sbjct: 683 RIDIANT--LREQVQDLFNKKYGEALGIKYPVQVPYKRIKSNPGSVIIEGLPPGIPFRKP 740

Query: 651 ENYDLATLKWILENKAGISFTINRPF 728
             +    L+ IL     I FT+ RPF
Sbjct: 741 CTFGSQNLERILAVADKIKFTVTRPF 766



 Score = 60.5 bits (145), Expect = 2e-09
 Identities = 39/99 (39%), Positives = 49/99 (49%)
 Frame = +3

Query: 435 PEVKPPHPVNGMQIDSGETEILRKAVEDYFCFCYGKALGTTAMVPVPYEKLLKDQAAVVV 614
           PE +P    +G  I       LRK VE  F   Y KA+G +  V VPY K L     + V
Sbjct: 549 PEERPVEDSHGDVIRP-----LRKQVELLFNTRYAKAIGISEPVKVPYSKFLMHPEELFV 603

Query: 615 QGLPEGVPFQHPENYDLATLKWILENKAGISFTINRPFL 731
            GLPEG+  + P  + +A L+ ILE    I F I RP L
Sbjct: 604 VGLPEGISLRRPNCFGIAKLRKILEASNSIQFVIKRPEL 642



 Score = 58.5 bits (140), Expect = 9e-09
 Identities = 31/78 (39%), Positives = 46/78 (58%)
 Frame = +3

Query: 483  GETEILRKAVEDYFCFCYGKALGTTAMVPVPYEKLLKDQAAVVVQGLPEGVPFQHPENYD 662
            GE  ILR+ V++ F   YG+ALG    V VPY+ +     AV V GLP+ +PF++P  YD
Sbjct: 782  GEKVILREQVKELFNEKYGEALGLNRPVLVPYKLIRDSPDAVEVTGLPDDIPFRNPNTYD 841

Query: 663  LATLKWILENKAGISFTI 716
            +  L+ IL+ +  +   I
Sbjct: 842  IHRLEKILKAREHVRMVI 859


>ref|NP_057412.1| general transcription factor II-I repeat domain-containing protein
           1 isoform 1 [Homo sapiens].
          Length = 959

 Score =  143 bits (360), Expect = 3e-34
 Identities = 74/174 (42%), Positives = 105/174 (60%), Gaps = 13/174 (7%)
 Frame = +3

Query: 243 VVTFLVSALESMCKELAKSKAEVACIAMYEADVFVVGTEKGRAFVNARTDLQKDFAKYCV 422
           ++T LVSAL+SMC  L+K  AEVAC+A+++   FVVGTEKGR F+NAR +LQ DF ++C 
Sbjct: 30  IITSLVSALDSMCSALSKLNAEVACVAVHDESAFVVGTEKGRMFLNARKELQSDFLRFCR 89

Query: 423 AEGLPEVKPPHPVNGMQIDSG-------------ETEILRKAVEDYFCFCYGKALGTTAM 563
                + +  HP    + + G             +  +LRK VE+ F   Y +ALG  ++
Sbjct: 90  GPPWKDPEAEHPKKVQRGEGGGRSLPRSSLEHGSDVYLLRKMVEEVFDVLYSEALGRASV 149

Query: 564 VPVPYEKLLKDQAAVVVQGLPEGVPFQHPENYDLATLKWILENKAGISFTINRP 725
           VP+PYE+LL++   + VQGLPEG+ F+ P  YD   L  ILE+   I F + RP
Sbjct: 150 VPLPYERLLREPGLLAVQGLPEGLAFRRPAEYDPKALMAILEHSHRIRFKLKRP 203



 Score = 65.1 bits (157), Expect = 9e-11
 Identities = 34/84 (40%), Positives = 48/84 (57%)
 Frame = +3

Query: 477 DSGETEILRKAVEDYFCFCYGKALGTTAMVPVPYEKLLKDQAAVVVQGLPEGVPFQHPEN 656
           ++ +   LR+ V+  F   Y +ALG   MVPVPY K+  D  AV + G+P+ +PF+ P  
Sbjct: 344 ETEDINTLRECVQILFNSRYAEALGLDHMVPVPYRKIACDPEAVEIVGIPDKIPFKRPCT 403

Query: 657 YDLATLKWILENKAGISFTINRPF 728
           Y +  LK ILE +  I F I R F
Sbjct: 404 YGVPKLKRILEERHSIHFIIKRMF 427



 Score = 63.9 bits (154), Expect = 2e-10
 Identities = 34/86 (39%), Positives = 51/86 (59%)
 Frame = +3

Query: 471 QIDSGETEILRKAVEDYFCFCYGKALGTTAMVPVPYEKLLKDQAAVVVQGLPEGVPFQHP 650
           +ID   T  LR+ V+D F   YG+ALG    V VPY+++  +  +V+++GLP G+PF+ P
Sbjct: 698 RIDIANT--LREQVQDLFNKKYGEALGIKYPVQVPYKRIKSNPGSVIIEGLPPGIPFRKP 755

Query: 651 ENYDLATLKWILENKAGISFTINRPF 728
             +    L+ IL     I FT+ RPF
Sbjct: 756 CTFGSQNLERILAVADKIKFTVTRPF 781



 Score = 60.5 bits (145), Expect = 2e-09
 Identities = 39/99 (39%), Positives = 49/99 (49%)
 Frame = +3

Query: 435 PEVKPPHPVNGMQIDSGETEILRKAVEDYFCFCYGKALGTTAMVPVPYEKLLKDQAAVVV 614
           PE +P    +G  I       LRK VE  F   Y KA+G +  V VPY K L     + V
Sbjct: 549 PEERPVEDSHGDVIRP-----LRKQVELLFNTRYAKAIGISEPVKVPYSKFLMHPEELFV 603

Query: 615 QGLPEGVPFQHPENYDLATLKWILENKAGISFTINRPFL 731
            GLPEG+  + P  + +A L+ ILE    I F I RP L
Sbjct: 604 VGLPEGISLRRPNCFGIAKLRKILEASNSIQFVIKRPEL 642



 Score = 58.5 bits (140), Expect = 9e-09
 Identities = 31/78 (39%), Positives = 46/78 (58%)
 Frame = +3

Query: 483  GETEILRKAVEDYFCFCYGKALGTTAMVPVPYEKLLKDQAAVVVQGLPEGVPFQHPENYD 662
            GE  ILR+ V++ F   YG+ALG    V VPY+ +     AV V GLP+ +PF++P  YD
Sbjct: 797  GEKVILREQVKELFNEKYGEALGLNRPVLVPYKLIRDSPDAVEVTGLPDDIPFRNPNTYD 856

Query: 663  LATLKWILENKAGISFTI 716
            +  L+ IL+ +  +   I
Sbjct: 857  IHRLEKILKAREHVRMVI 874


>ref|NP_001186136.1| general transcription factor II-I repeat domain-containing protein
           1 isoform 3 [Homo sapiens].
          Length = 976

 Score =  134 bits (336), Expect = 2e-31
 Identities = 77/206 (37%), Positives = 108/206 (52%), Gaps = 45/206 (21%)
 Frame = +3

Query: 243 VVTFLVSALESMCKELAKSKAEVACIAMYEADVFVVGTEKGRAFVNARTDLQKDFAKYCV 422
           ++T LVSAL+SMC  L+K  AEVAC+A+++   FVVGTEKGR F+NAR +LQ DF ++C+
Sbjct: 30  IITSLVSALDSMCSALSKLNAEVACVAVHDESAFVVGTEKGRMFLNARKELQSDFLRFCL 89

Query: 423 A-----------------------------EGLPEVKPPHPVNGMQIDSGE--------- 488
           +                              G P  K P   +  ++  GE         
Sbjct: 90  SAAQHRAATSQLEGRVVRRVLTVASRALCPTGGPPWKDPEAEHPKKVQRGEGGGRSLPRS 149

Query: 489 -------TEILRKAVEDYFCFCYGKALGTTAMVPVPYEKLLKDQAAVVVQGLPEGVPFQH 647
                    +LRK VE+ F   Y +ALG  ++VP+PYE+LL++   + VQGLPEG+ F+ 
Sbjct: 150 SLEHGSDVYLLRKMVEEVFDVLYSEALGRASVVPLPYERLLREPGLLAVQGLPEGLAFRR 209

Query: 648 PENYDLATLKWILENKAGISFTINRP 725
           P  YD   L  ILE+   I F + RP
Sbjct: 210 PAEYDPKALMAILEHSHRIRFKLKRP 235



 Score = 65.1 bits (157), Expect = 9e-11
 Identities = 34/84 (40%), Positives = 48/84 (57%)
 Frame = +3

Query: 477 DSGETEILRKAVEDYFCFCYGKALGTTAMVPVPYEKLLKDQAAVVVQGLPEGVPFQHPEN 656
           ++ +   LR+ V+  F   Y +ALG   MVPVPY K+  D  AV + G+P+ +PF+ P  
Sbjct: 376 ETEDINTLRECVQILFNSRYAEALGLDHMVPVPYRKIACDPEAVEIVGIPDKIPFKRPCT 435

Query: 657 YDLATLKWILENKAGISFTINRPF 728
           Y +  LK ILE +  I F I R F
Sbjct: 436 YGVPKLKRILEERHSIHFIIKRMF 459



 Score = 63.9 bits (154), Expect = 2e-10
 Identities = 34/86 (39%), Positives = 51/86 (59%)
 Frame = +3

Query: 471 QIDSGETEILRKAVEDYFCFCYGKALGTTAMVPVPYEKLLKDQAAVVVQGLPEGVPFQHP 650
           +ID   T  LR+ V+D F   YG+ALG    V VPY+++  +  +V+++GLP G+PF+ P
Sbjct: 715 RIDIANT--LREQVQDLFNKKYGEALGIKYPVQVPYKRIKSNPGSVIIEGLPPGIPFRKP 772

Query: 651 ENYDLATLKWILENKAGISFTINRPF 728
             +    L+ IL     I FT+ RPF
Sbjct: 773 CTFGSQNLERILAVADKIKFTVTRPF 798



 Score = 60.5 bits (145), Expect = 2e-09
 Identities = 39/99 (39%), Positives = 49/99 (49%)
 Frame = +3

Query: 435 PEVKPPHPVNGMQIDSGETEILRKAVEDYFCFCYGKALGTTAMVPVPYEKLLKDQAAVVV 614
           PE +P    +G  I       LRK VE  F   Y KA+G +  V VPY K L     + V
Sbjct: 581 PEERPVEDSHGDVIRP-----LRKQVELLFNTRYAKAIGISEPVKVPYSKFLMHPEELFV 635

Query: 615 QGLPEGVPFQHPENYDLATLKWILENKAGISFTINRPFL 731
            GLPEG+  + P  + +A L+ ILE    I F I RP L
Sbjct: 636 VGLPEGISLRRPNCFGIAKLRKILEASNSIQFVIKRPEL 674



 Score = 58.5 bits (140), Expect = 9e-09
 Identities = 31/78 (39%), Positives = 46/78 (58%)
 Frame = +3

Query: 483  GETEILRKAVEDYFCFCYGKALGTTAMVPVPYEKLLKDQAAVVVQGLPEGVPFQHPENYD 662
            GE  ILR+ V++ F   YG+ALG    V VPY+ +     AV V GLP+ +PF++P  YD
Sbjct: 814  GEKVILREQVKELFNEKYGEALGLNRPVLVPYKLIRDSPDAVEVTGLPDDIPFRNPNTYD 873

Query: 663  LATLKWILENKAGISFTI 716
            +  L+ IL+ +  +   I
Sbjct: 874  IHRLEKILKAREHVRMVI 891


  Database: RefSeq49_HP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 18,297,164
  Number of sequences in database:  32,964
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 38,523,202
Number of extensions: 1078646
Number of successful extensions: 4265
Number of sequences better than 1.0e-05: 10
Number of HSP's gapped: 4180
Number of HSP's successfully gapped: 51
Length of query: 318
Length of database: 18,297,164
Length adjustment: 103
Effective length of query: 215
Effective length of database: 14,901,872
Effective search space: 3203902480
Effective search space used: 3203902480
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-004236
         (955 letters)

Database: RefSeq49_MP.fasta 
           30,036 sequences; 15,617,559 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|NP_001074218.1| general transcription factor II-I isoform 5 ...   360   1e-99
Alignment   gi|NP_001074217.1| general transcription factor II-I isoform 4 ...   360   1e-99
Alignment   gi|NP_034495.2| general transcription factor II-I isoform 2 [Mu...   360   1e-99
Alignment   gi|NP_001074216.1| general transcription factor II-I isoform 3 ...   349   2e-96
Alignment   gi|NP_001074215.1| general transcription factor II-I isoform 1 ...   349   2e-96
Alignment   gi|NP_444496.1| general transcription factor II-I repeat domain...   327   8e-90
Alignment   gi|NP_001074939.1| general transcription factor II-I repeat dom...   134   1e-31
Alignment   gi|NP_001074938.1| general transcription factor II-I repeat dom...   134   1e-31
Alignment   gi|NP_001074937.1| general transcription factor II-I repeat dom...   134   1e-31
Alignment   gi|NP_001074936.1| general transcription factor II-I repeat dom...   134   1e-31

>ref|NP_001074218.1| general transcription factor II-I isoform 5 [Mus musculus].
          Length = 962

 Score =  360 bits (923), Expect = 1e-99
 Identities = 183/263 (69%), Positives = 208/263 (79%), Gaps = 5/263 (1%)
 Frame = +3

Query: 180 MAQVAMSTLPVENEESSDSRMVVTFLVSALESMCKELAKSKAEVACIAMYEADVFVVGTE 359
           MAQV MS LP E+EESS+SRMVVTFL+SALESMCKELAKSKAEVACIA+YE DVFVVGTE
Sbjct: 1   MAQVVMSALPAEDEESSESRMVVTFLMSALESMCKELAKSKAEVACIAVYETDVFVVGTE 60

Query: 360 KGRAFVNARTDLQKDFAKYCVAEG-----LPEVKPPHPVNGMQIDSGETEILRKAVEDYF 524
           +GRAFVN R D QKDF KYCV E      + ++K     N M +D+ E E LRK VEDYF
Sbjct: 61  RGRAFVNTRKDFQKDFVKYCVEEEEKAAEMHKMKSTTQANRMSVDAVEIETLRKTVEDYF 120

Query: 525 CFCYGKALGTTAMVPVPYEKLLKDQAAVVVQGLPEGVPFQHPENYDLATLKWILENKAGI 704
           CFCYGKALG + +VPVPYEK+L+DQ+AVVVQGLPEGV F+HPE+YDLATLKWILENKAGI
Sbjct: 121 CFCYGKALGKSTVVPVPYEKMLRDQSAVVVQGLPEGVAFKHPEHYDLATLKWILENKAGI 180

Query: 705 SFTINRPFLXXXXXXXXXXXXTDAVRSVTSPSESCVPINVKTEPMEDSGISLKAAAVSVK 884
           SF I RPFL             +A RS+ SPS SC PI VKTEP EDSGISL+ AAV+VK
Sbjct: 181 SFIIKRPFLEPKKHLGGRVLAAEAERSMLSPSGSCGPIKVKTEPTEDSGISLEMAAVTVK 240

Query: 885 KESEDPNYYQHNMQDSHHSSGSN 953
           +ESEDP+YYQ+N+Q SHHSS  N
Sbjct: 241 EESEDPDYYQYNIQGSHHSSEGN 263



 Score = 61.2 bits (147), Expect = 1e-09
 Identities = 47/171 (27%), Positives = 75/171 (43%), Gaps = 11/171 (6%)
 Frame = +3

Query: 249  TFLVSALESMCKELAKSKAEVACIAMYEA-----------DVFVVGTEKGRAFVNARTDL 395
            TF +  LE + +  AK K  +    M+E             +F+ G       VN     
Sbjct: 745  TFGIPRLEKILRNKAKIKFIIKKPEMFETAIKESTSSKSPPIFLSGKINSSPNVNTTASG 804

Query: 396  QKDFAKYCVAEGLPEVKPPHPVNGMQIDSGETEILRKAVEDYFCFCYGKALGTTAMVPVP 575
             +D         + +V  P   N       +   LR+ V D F   +G+A+G    V VP
Sbjct: 805  VEDL-------NIIQVTIPDDDNERLSKVEKARQLREQVNDLFSRKFGEAIGMGFPVKVP 857

Query: 576  YEKLLKDQAAVVVQGLPEGVPFQHPENYDLATLKWILENKAGISFTINRPF 728
            Y K+  +   VVV G+P GV F+ P   ++++++ IL++   I FT+ RPF
Sbjct: 858  YRKITINPGCVVVDGMPPGVSFKAPSYLEISSMRRILDSAEFIKFTVIRPF 908



 Score = 59.3 bits (142), Expect = 4e-09
 Identities = 31/78 (39%), Positives = 44/78 (56%)
 Frame = +3

Query: 498 LRKAVEDYFCFCYGKALGTTAMVPVPYEKLLKDQAAVVVQGLPEGVPFQHPENYDLATLK 677
           LRK V+  FC  + +ALG+T    VPY+K       + V+GLPE +PF+ P  Y +  L+
Sbjct: 426 LRKMVDQLFCKKFAEALGSTEAKAVPYQKFEAHPNDLYVEGLPENIPFRSPSWYGIPRLE 485

Query: 678 WILENKAGISFTINRPFL 731
            I++    I F I RP L
Sbjct: 486 KIIQVGNRIKFVIKRPEL 503



 Score = 56.6 bits (135), Expect = 3e-08
 Identities = 29/78 (37%), Positives = 43/78 (55%)
 Frame = +3

Query: 498 LRKAVEDYFCFCYGKALGTTAMVPVPYEKLLKDQAAVVVQGLPEGVPFQHPENYDLATLK 677
           LRK VE+ F   + +ALG T  V VPY     +   + V+GLPEG+PF+ P  + +  L+
Sbjct: 531 LRKQVEEIFNLKFAQALGLTEAVKVPYPVFESNPEFLYVEGLPEGIPFRSPTWFGIPRLE 590

Query: 678 WILENKAGISFTINRPFL 731
            I+     I F + +P L
Sbjct: 591 RIVRGSNKIKFVVKKPEL 608



 Score = 56.6 bits (135), Expect = 3e-08
 Identities = 31/76 (40%), Positives = 42/76 (55%)
 Frame = +3

Query: 498 LRKAVEDYFCFCYGKALGTTAMVPVPYEKLLKDQAAVVVQGLPEGVPFQHPENYDLATLK 677
           L++ VE+ F    G+ALG    V VP+           V+GLPEGVPF+ P  + +  L+
Sbjct: 693 LKQKVENLFNEKCGEALGLKQAVKVPFALFESFPEDFYVEGLPEGVPFRRPSTFGIPRLE 752

Query: 678 WILENKAGISFTINRP 725
            IL NKA I F I +P
Sbjct: 753 KILRNKAKIKFIIKKP 768



 Score = 52.0 bits (123), Expect = 7e-07
 Identities = 28/75 (37%), Positives = 39/75 (52%)
 Frame = +3

Query: 498 LRKAVEDYFCFCYGKALGTTAMVPVPYEKLLKDQAAVVVQGLPEGVPFQHPENYDLATLK 677
           LRK VE+ F   Y +A+     V +PY         + V+GLPEG+PF+ P  Y +  L+
Sbjct: 321 LRKQVEELFERKYAQAIKAKGPVTIPYPLFQSHVEDLYVEGLPEGIPFRRPSTYGIPRLE 380

Query: 678 WILENKAGISFTINR 722
            IL  K  I F I +
Sbjct: 381 RILLAKERIRFVIKK 395


>ref|NP_001074217.1| general transcription factor II-I isoform 4 [Mus musculus].
          Length = 958

 Score =  360 bits (923), Expect = 1e-99
 Identities = 183/263 (69%), Positives = 208/263 (79%), Gaps = 5/263 (1%)
 Frame = +3

Query: 180 MAQVAMSTLPVENEESSDSRMVVTFLVSALESMCKELAKSKAEVACIAMYEADVFVVGTE 359
           MAQV MS LP E+EESS+SRMVVTFL+SALESMCKELAKSKAEVACIA+YE DVFVVGTE
Sbjct: 1   MAQVVMSALPAEDEESSESRMVVTFLMSALESMCKELAKSKAEVACIAVYETDVFVVGTE 60

Query: 360 KGRAFVNARTDLQKDFAKYCVAEG-----LPEVKPPHPVNGMQIDSGETEILRKAVEDYF 524
           +GRAFVN R D QKDF KYCV E      + ++K     N M +D+ E E LRK VEDYF
Sbjct: 61  RGRAFVNTRKDFQKDFVKYCVEEEEKAAEMHKMKSTTQANRMSVDAVEIETLRKTVEDYF 120

Query: 525 CFCYGKALGTTAMVPVPYEKLLKDQAAVVVQGLPEGVPFQHPENYDLATLKWILENKAGI 704
           CFCYGKALG + +VPVPYEK+L+DQ+AVVVQGLPEGV F+HPE+YDLATLKWILENKAGI
Sbjct: 121 CFCYGKALGKSTVVPVPYEKMLRDQSAVVVQGLPEGVAFKHPEHYDLATLKWILENKAGI 180

Query: 705 SFTINRPFLXXXXXXXXXXXXTDAVRSVTSPSESCVPINVKTEPMEDSGISLKAAAVSVK 884
           SF I RPFL             +A RS+ SPS SC PI VKTEP EDSGISL+ AAV+VK
Sbjct: 181 SFIIKRPFLEPKKHLGGRVLAAEAERSMLSPSGSCGPIKVKTEPTEDSGISLEMAAVTVK 240

Query: 885 KESEDPNYYQHNMQDSHHSSGSN 953
           +ESEDP+YYQ+N+Q SHHSS  N
Sbjct: 241 EESEDPDYYQYNIQGSHHSSEGN 263



 Score = 60.8 bits (146), Expect = 1e-09
 Identities = 30/77 (38%), Positives = 47/77 (61%)
 Frame = +3

Query: 498  LRKAVEDYFCFCYGKALGTTAMVPVPYEKLLKDQAAVVVQGLPEGVPFQHPENYDLATLK 677
            LR+ V D F   +G+A+G    V VPY K+  +   VVV G+P GV F+ P   ++++++
Sbjct: 828  LREQVNDLFSRKFGEAIGMGFPVKVPYRKITINPGCVVVDGMPPGVSFKAPSYLEISSMR 887

Query: 678  WILENKAGISFTINRPF 728
             IL++   I FT+ RPF
Sbjct: 888  RILDSAEFIKFTVIRPF 904



 Score = 59.3 bits (142), Expect = 4e-09
 Identities = 31/78 (39%), Positives = 44/78 (56%)
 Frame = +3

Query: 498 LRKAVEDYFCFCYGKALGTTAMVPVPYEKLLKDQAAVVVQGLPEGVPFQHPENYDLATLK 677
           LRK V+  FC  + +ALG+T    VPY+K       + V+GLPE +PF+ P  Y +  L+
Sbjct: 426 LRKMVDQLFCKKFAEALGSTEAKAVPYQKFEAHPNDLYVEGLPENIPFRSPSWYGIPRLE 485

Query: 678 WILENKAGISFTINRPFL 731
            I++    I F I RP L
Sbjct: 486 KIIQVGNRIKFVIKRPEL 503



 Score = 56.6 bits (135), Expect = 3e-08
 Identities = 29/78 (37%), Positives = 43/78 (55%)
 Frame = +3

Query: 498 LRKAVEDYFCFCYGKALGTTAMVPVPYEKLLKDQAAVVVQGLPEGVPFQHPENYDLATLK 677
           LRK VE+ F   + +ALG T  V VPY     +   + V+GLPEG+PF+ P  + +  L+
Sbjct: 531 LRKQVEEIFNLKFAQALGLTEAVKVPYPVFESNPEFLYVEGLPEGIPFRSPTWFGIPRLE 590

Query: 678 WILENKAGISFTINRPFL 731
            I+     I F + +P L
Sbjct: 591 RIVRGSNKIKFVVKKPEL 608



 Score = 56.6 bits (135), Expect = 3e-08
 Identities = 31/76 (40%), Positives = 42/76 (55%)
 Frame = +3

Query: 498 LRKAVEDYFCFCYGKALGTTAMVPVPYEKLLKDQAAVVVQGLPEGVPFQHPENYDLATLK 677
           L++ VE+ F    G+ALG    V VP+           V+GLPEGVPF+ P  + +  L+
Sbjct: 693 LKQKVENLFNEKCGEALGLKQAVKVPFALFESFPEDFYVEGLPEGVPFRRPSTFGIPRLE 752

Query: 678 WILENKAGISFTINRP 725
            IL NKA I F I +P
Sbjct: 753 KILRNKAKIKFIIKKP 768



 Score = 52.0 bits (123), Expect = 7e-07
 Identities = 28/75 (37%), Positives = 39/75 (52%)
 Frame = +3

Query: 498 LRKAVEDYFCFCYGKALGTTAMVPVPYEKLLKDQAAVVVQGLPEGVPFQHPENYDLATLK 677
           LRK VE+ F   Y +A+     V +PY         + V+GLPEG+PF+ P  Y +  L+
Sbjct: 321 LRKQVEELFERKYAQAIKAKGPVTIPYPLFQSHVEDLYVEGLPEGIPFRRPSTYGIPRLE 380

Query: 678 WILENKAGISFTINR 722
            IL  K  I F I +
Sbjct: 381 RILLAKERIRFVIKK 395


>ref|NP_034495.2| general transcription factor II-I isoform 2 [Mus musculus].
          Length = 979

 Score =  360 bits (923), Expect = 1e-99
 Identities = 183/263 (69%), Positives = 208/263 (79%), Gaps = 5/263 (1%)
 Frame = +3

Query: 180 MAQVAMSTLPVENEESSDSRMVVTFLVSALESMCKELAKSKAEVACIAMYEADVFVVGTE 359
           MAQV MS LP E+EESS+SRMVVTFL+SALESMCKELAKSKAEVACIA+YE DVFVVGTE
Sbjct: 1   MAQVVMSALPAEDEESSESRMVVTFLMSALESMCKELAKSKAEVACIAVYETDVFVVGTE 60

Query: 360 KGRAFVNARTDLQKDFAKYCVAEG-----LPEVKPPHPVNGMQIDSGETEILRKAVEDYF 524
           +GRAFVN R D QKDF KYCV E      + ++K     N M +D+ E E LRK VEDYF
Sbjct: 61  RGRAFVNTRKDFQKDFVKYCVEEEEKAAEMHKMKSTTQANRMSVDAVEIETLRKTVEDYF 120

Query: 525 CFCYGKALGTTAMVPVPYEKLLKDQAAVVVQGLPEGVPFQHPENYDLATLKWILENKAGI 704
           CFCYGKALG + +VPVPYEK+L+DQ+AVVVQGLPEGV F+HPE+YDLATLKWILENKAGI
Sbjct: 121 CFCYGKALGKSTVVPVPYEKMLRDQSAVVVQGLPEGVAFKHPEHYDLATLKWILENKAGI 180

Query: 705 SFTINRPFLXXXXXXXXXXXXTDAVRSVTSPSESCVPINVKTEPMEDSGISLKAAAVSVK 884
           SF I RPFL             +A RS+ SPS SC PI VKTEP EDSGISL+ AAV+VK
Sbjct: 181 SFIIKRPFLEPKKHLGGRVLAAEAERSMLSPSGSCGPIKVKTEPTEDSGISLEMAAVTVK 240

Query: 885 KESEDPNYYQHNMQDSHHSSGSN 953
           +ESEDP+YYQ+N+Q SHHSS  N
Sbjct: 241 EESEDPDYYQYNIQGSHHSSEGN 263



 Score = 60.8 bits (146), Expect = 1e-09
 Identities = 30/77 (38%), Positives = 47/77 (61%)
 Frame = +3

Query: 498  LRKAVEDYFCFCYGKALGTTAMVPVPYEKLLKDQAAVVVQGLPEGVPFQHPENYDLATLK 677
            LR+ V D F   +G+A+G    V VPY K+  +   VVV G+P GV F+ P   ++++++
Sbjct: 849  LREQVNDLFSRKFGEAIGMGFPVKVPYRKITINPGCVVVDGMPPGVSFKAPSYLEISSMR 908

Query: 678  WILENKAGISFTINRPF 728
             IL++   I FT+ RPF
Sbjct: 909  RILDSAEFIKFTVIRPF 925



 Score = 59.3 bits (142), Expect = 4e-09
 Identities = 31/78 (39%), Positives = 44/78 (56%)
 Frame = +3

Query: 498 LRKAVEDYFCFCYGKALGTTAMVPVPYEKLLKDQAAVVVQGLPEGVPFQHPENYDLATLK 677
           LRK V+  FC  + +ALG+T    VPY+K       + V+GLPE +PF+ P  Y +  L+
Sbjct: 447 LRKMVDQLFCKKFAEALGSTEAKAVPYQKFEAHPNDLYVEGLPENIPFRSPSWYGIPRLE 506

Query: 678 WILENKAGISFTINRPFL 731
            I++    I F I RP L
Sbjct: 507 KIIQVGNRIKFVIKRPEL 524



 Score = 56.6 bits (135), Expect = 3e-08
 Identities = 29/78 (37%), Positives = 43/78 (55%)
 Frame = +3

Query: 498 LRKAVEDYFCFCYGKALGTTAMVPVPYEKLLKDQAAVVVQGLPEGVPFQHPENYDLATLK 677
           LRK VE+ F   + +ALG T  V VPY     +   + V+GLPEG+PF+ P  + +  L+
Sbjct: 552 LRKQVEEIFNLKFAQALGLTEAVKVPYPVFESNPEFLYVEGLPEGIPFRSPTWFGIPRLE 611

Query: 678 WILENKAGISFTINRPFL 731
            I+     I F + +P L
Sbjct: 612 RIVRGSNKIKFVVKKPEL 629



 Score = 56.6 bits (135), Expect = 3e-08
 Identities = 31/76 (40%), Positives = 42/76 (55%)
 Frame = +3

Query: 498 LRKAVEDYFCFCYGKALGTTAMVPVPYEKLLKDQAAVVVQGLPEGVPFQHPENYDLATLK 677
           L++ VE+ F    G+ALG    V VP+           V+GLPEGVPF+ P  + +  L+
Sbjct: 714 LKQKVENLFNEKCGEALGLKQAVKVPFALFESFPEDFYVEGLPEGVPFRRPSTFGIPRLE 773

Query: 678 WILENKAGISFTINRP 725
            IL NKA I F I +P
Sbjct: 774 KILRNKAKIKFIIKKP 789



 Score = 52.0 bits (123), Expect = 7e-07
 Identities = 28/75 (37%), Positives = 39/75 (52%)
 Frame = +3

Query: 498 LRKAVEDYFCFCYGKALGTTAMVPVPYEKLLKDQAAVVVQGLPEGVPFQHPENYDLATLK 677
           LRK VE+ F   Y +A+     V +PY         + V+GLPEG+PF+ P  Y +  L+
Sbjct: 342 LRKQVEELFERKYAQAIKAKGPVTIPYPLFQSHVEDLYVEGLPEGIPFRRPSTYGIPRLE 401

Query: 678 WILENKAGISFTINR 722
            IL  K  I F I +
Sbjct: 402 RILLAKERIRFVIKK 416


>ref|NP_001074216.1| general transcription factor II-I isoform 3 [Mus musculus].
          Length = 977

 Score =  349 bits (896), Expect = 2e-96
 Identities = 178/261 (68%), Positives = 204/261 (78%), Gaps = 5/261 (1%)
 Frame = +3

Query: 180 MAQVAMSTLPVENEESSDSRMVVTFLVSALESMCKELAKSKAEVACIAMYEADVFVVGTE 359
           MAQV MS LP E+EESS+SRMVVTFL+SALESMCKELAKSKAEVACIA+YE DVFVVGTE
Sbjct: 1   MAQVVMSALPAEDEESSESRMVVTFLMSALESMCKELAKSKAEVACIAVYETDVFVVGTE 60

Query: 360 KGRAFVNARTDLQKDFAKYCVAEG-----LPEVKPPHPVNGMQIDSGETEILRKAVEDYF 524
           +GRAFVN R D QKDF KYCV E      + ++K     N M +D+ E E LRK VEDYF
Sbjct: 61  RGRAFVNTRKDFQKDFVKYCVEEEEKAAEMHKMKSTTQANRMSVDAVEIETLRKTVEDYF 120

Query: 525 CFCYGKALGTTAMVPVPYEKLLKDQAAVVVQGLPEGVPFQHPENYDLATLKWILENKAGI 704
           CFCYGKALG + +VPVPYEK+L+DQ+AVVVQGLPEGV F+HPE+YDLATLKWILENKAGI
Sbjct: 121 CFCYGKALGKSTVVPVPYEKMLRDQSAVVVQGLPEGVAFKHPEHYDLATLKWILENKAGI 180

Query: 705 SFTINRPFLXXXXXXXXXXXXTDAVRSVTSPSESCVPINVKTEPMEDSGISLKAAAVSVK 884
           SF I RPFL             +A RS+ SPS SC PI VKTEP EDSGISL+ AAV+VK
Sbjct: 181 SFIIKRPFLEPKKHLGGRVLAAEAERSMLSPSGSCGPIKVKTEPTEDSGISLEMAAVTVK 240

Query: 885 KESEDPNYYQHNMQDSHHSSG 947
           +ESEDP+YYQ+N+Q    + G
Sbjct: 241 EESEDPDYYQYNIQGPSETDG 261



 Score = 60.8 bits (146), Expect = 1e-09
 Identities = 30/77 (38%), Positives = 47/77 (61%)
 Frame = +3

Query: 498  LRKAVEDYFCFCYGKALGTTAMVPVPYEKLLKDQAAVVVQGLPEGVPFQHPENYDLATLK 677
            LR+ V D F   +G+A+G    V VPY K+  +   VVV G+P GV F+ P   ++++++
Sbjct: 847  LREQVNDLFSRKFGEAIGMGFPVKVPYRKITINPGCVVVDGMPPGVSFKAPSYLEISSMR 906

Query: 678  WILENKAGISFTINRPF 728
             IL++   I FT+ RPF
Sbjct: 907  RILDSAEFIKFTVIRPF 923



 Score = 59.3 bits (142), Expect = 4e-09
 Identities = 31/78 (39%), Positives = 44/78 (56%)
 Frame = +3

Query: 498 LRKAVEDYFCFCYGKALGTTAMVPVPYEKLLKDQAAVVVQGLPEGVPFQHPENYDLATLK 677
           LRK V+  FC  + +ALG+T    VPY+K       + V+GLPE +PF+ P  Y +  L+
Sbjct: 445 LRKMVDQLFCKKFAEALGSTEAKAVPYQKFEAHPNDLYVEGLPENIPFRSPSWYGIPRLE 504

Query: 678 WILENKAGISFTINRPFL 731
            I++    I F I RP L
Sbjct: 505 KIIQVGNRIKFVIKRPEL 522



 Score = 56.6 bits (135), Expect = 3e-08
 Identities = 29/78 (37%), Positives = 43/78 (55%)
 Frame = +3

Query: 498 LRKAVEDYFCFCYGKALGTTAMVPVPYEKLLKDQAAVVVQGLPEGVPFQHPENYDLATLK 677
           LRK VE+ F   + +ALG T  V VPY     +   + V+GLPEG+PF+ P  + +  L+
Sbjct: 550 LRKQVEEIFNLKFAQALGLTEAVKVPYPVFESNPEFLYVEGLPEGIPFRSPTWFGIPRLE 609

Query: 678 WILENKAGISFTINRPFL 731
            I+     I F + +P L
Sbjct: 610 RIVRGSNKIKFVVKKPEL 627



 Score = 56.6 bits (135), Expect = 3e-08
 Identities = 31/76 (40%), Positives = 42/76 (55%)
 Frame = +3

Query: 498 LRKAVEDYFCFCYGKALGTTAMVPVPYEKLLKDQAAVVVQGLPEGVPFQHPENYDLATLK 677
           L++ VE+ F    G+ALG    V VP+           V+GLPEGVPF+ P  + +  L+
Sbjct: 712 LKQKVENLFNEKCGEALGLKQAVKVPFALFESFPEDFYVEGLPEGVPFRRPSTFGIPRLE 771

Query: 678 WILENKAGISFTINRP 725
            IL NKA I F I +P
Sbjct: 772 KILRNKAKIKFIIKKP 787



 Score = 52.0 bits (123), Expect = 7e-07
 Identities = 28/75 (37%), Positives = 39/75 (52%)
 Frame = +3

Query: 498 LRKAVEDYFCFCYGKALGTTAMVPVPYEKLLKDQAAVVVQGLPEGVPFQHPENYDLATLK 677
           LRK VE+ F   Y +A+     V +PY         + V+GLPEG+PF+ P  Y +  L+
Sbjct: 340 LRKQVEELFERKYAQAIKAKGPVTIPYPLFQSHVEDLYVEGLPEGIPFRRPSTYGIPRLE 399

Query: 678 WILENKAGISFTINR 722
            IL  K  I F I +
Sbjct: 400 RILLAKERIRFVIKK 414


>ref|NP_001074215.1| general transcription factor II-I isoform 1 [Mus musculus].
          Length = 998

 Score =  349 bits (896), Expect = 2e-96
 Identities = 178/261 (68%), Positives = 204/261 (78%), Gaps = 5/261 (1%)
 Frame = +3

Query: 180 MAQVAMSTLPVENEESSDSRMVVTFLVSALESMCKELAKSKAEVACIAMYEADVFVVGTE 359
           MAQV MS LP E+EESS+SRMVVTFL+SALESMCKELAKSKAEVACIA+YE DVFVVGTE
Sbjct: 1   MAQVVMSALPAEDEESSESRMVVTFLMSALESMCKELAKSKAEVACIAVYETDVFVVGTE 60

Query: 360 KGRAFVNARTDLQKDFAKYCVAEG-----LPEVKPPHPVNGMQIDSGETEILRKAVEDYF 524
           +GRAFVN R D QKDF KYCV E      + ++K     N M +D+ E E LRK VEDYF
Sbjct: 61  RGRAFVNTRKDFQKDFVKYCVEEEEKAAEMHKMKSTTQANRMSVDAVEIETLRKTVEDYF 120

Query: 525 CFCYGKALGTTAMVPVPYEKLLKDQAAVVVQGLPEGVPFQHPENYDLATLKWILENKAGI 704
           CFCYGKALG + +VPVPYEK+L+DQ+AVVVQGLPEGV F+HPE+YDLATLKWILENKAGI
Sbjct: 121 CFCYGKALGKSTVVPVPYEKMLRDQSAVVVQGLPEGVAFKHPEHYDLATLKWILENKAGI 180

Query: 705 SFTINRPFLXXXXXXXXXXXXTDAVRSVTSPSESCVPINVKTEPMEDSGISLKAAAVSVK 884
           SF I RPFL             +A RS+ SPS SC PI VKTEP EDSGISL+ AAV+VK
Sbjct: 181 SFIIKRPFLEPKKHLGGRVLAAEAERSMLSPSGSCGPIKVKTEPTEDSGISLEMAAVTVK 240

Query: 885 KESEDPNYYQHNMQDSHHSSG 947
           +ESEDP+YYQ+N+Q    + G
Sbjct: 241 EESEDPDYYQYNIQGPSETDG 261



 Score = 60.8 bits (146), Expect = 1e-09
 Identities = 30/77 (38%), Positives = 47/77 (61%)
 Frame = +3

Query: 498  LRKAVEDYFCFCYGKALGTTAMVPVPYEKLLKDQAAVVVQGLPEGVPFQHPENYDLATLK 677
            LR+ V D F   +G+A+G    V VPY K+  +   VVV G+P GV F+ P   ++++++
Sbjct: 868  LREQVNDLFSRKFGEAIGMGFPVKVPYRKITINPGCVVVDGMPPGVSFKAPSYLEISSMR 927

Query: 678  WILENKAGISFTINRPF 728
             IL++   I FT+ RPF
Sbjct: 928  RILDSAEFIKFTVIRPF 944



 Score = 59.3 bits (142), Expect = 4e-09
 Identities = 31/78 (39%), Positives = 44/78 (56%)
 Frame = +3

Query: 498 LRKAVEDYFCFCYGKALGTTAMVPVPYEKLLKDQAAVVVQGLPEGVPFQHPENYDLATLK 677
           LRK V+  FC  + +ALG+T    VPY+K       + V+GLPE +PF+ P  Y +  L+
Sbjct: 466 LRKMVDQLFCKKFAEALGSTEAKAVPYQKFEAHPNDLYVEGLPENIPFRSPSWYGIPRLE 525

Query: 678 WILENKAGISFTINRPFL 731
            I++    I F I RP L
Sbjct: 526 KIIQVGNRIKFVIKRPEL 543



 Score = 56.6 bits (135), Expect = 3e-08
 Identities = 29/78 (37%), Positives = 43/78 (55%)
 Frame = +3

Query: 498 LRKAVEDYFCFCYGKALGTTAMVPVPYEKLLKDQAAVVVQGLPEGVPFQHPENYDLATLK 677
           LRK VE+ F   + +ALG T  V VPY     +   + V+GLPEG+PF+ P  + +  L+
Sbjct: 571 LRKQVEEIFNLKFAQALGLTEAVKVPYPVFESNPEFLYVEGLPEGIPFRSPTWFGIPRLE 630

Query: 678 WILENKAGISFTINRPFL 731
            I+     I F + +P L
Sbjct: 631 RIVRGSNKIKFVVKKPEL 648



 Score = 56.6 bits (135), Expect = 3e-08
 Identities = 31/76 (40%), Positives = 42/76 (55%)
 Frame = +3

Query: 498 LRKAVEDYFCFCYGKALGTTAMVPVPYEKLLKDQAAVVVQGLPEGVPFQHPENYDLATLK 677
           L++ VE+ F    G+ALG    V VP+           V+GLPEGVPF+ P  + +  L+
Sbjct: 733 LKQKVENLFNEKCGEALGLKQAVKVPFALFESFPEDFYVEGLPEGVPFRRPSTFGIPRLE 792

Query: 678 WILENKAGISFTINRP 725
            IL NKA I F I +P
Sbjct: 793 KILRNKAKIKFIIKKP 808



 Score = 52.0 bits (123), Expect = 7e-07
 Identities = 28/75 (37%), Positives = 39/75 (52%)
 Frame = +3

Query: 498 LRKAVEDYFCFCYGKALGTTAMVPVPYEKLLKDQAAVVVQGLPEGVPFQHPENYDLATLK 677
           LRK VE+ F   Y +A+     V +PY         + V+GLPEG+PF+ P  Y +  L+
Sbjct: 361 LRKQVEELFERKYAQAIKAKGPVTIPYPLFQSHVEDLYVEGLPEGIPFRRPSTYGIPRLE 420

Query: 678 WILENKAGISFTINR 722
            IL  K  I F I +
Sbjct: 421 RILLAKERIRFVIKK 435


>ref|NP_444496.1| general transcription factor II-I repeat domain-containing protein
           2 [Mus musculus].
          Length = 936

 Score =  327 bits (838), Expect = 8e-90
 Identities = 169/258 (65%), Positives = 201/258 (77%)
 Frame = +3

Query: 180 MAQVAMSTLPVENEESSDSRMVVTFLVSALESMCKELAKSKAEVACIAMYEADVFVVGTE 359
           MAQVA++T P +  E SD RMVVTFL+SALESMCKELAKSKAEVACIA+YE DV+VVGTE
Sbjct: 1   MAQVAVTTQPTD--EPSDGRMVVTFLMSALESMCKELAKSKAEVACIAVYETDVYVVGTE 58

Query: 360 KGRAFVNARTDLQKDFAKYCVAEGLPEVKPPHPVNGMQIDSGETEILRKAVEDYFCFCYG 539
           +G AFVNAR DLQKDFA++C  EGLPE KP    NG +   GE ++LR+AV+D+FC CY 
Sbjct: 59  RGCAFVNARQDLQKDFAQHCQGEGLPEEKPLCLGNG-EACPGEAQLLRRAVQDHFCLCYR 117

Query: 540 KALGTTAMVPVPYEKLLKDQAAVVVQGLPEGVPFQHPENYDLATLKWILENKAGISFTIN 719
           KALGTTAMVPVPYE++L+D+AAVVV+GLPEG+ FQHP+NY LATLKWILENKAGISF + 
Sbjct: 118 KALGTTAMVPVPYEQMLQDEAAVVVRGLPEGLAFQHPDNYSLATLKWILENKAGISFAVK 177

Query: 720 RPFLXXXXXXXXXXXXTDAVRSVTSPSESCVPINVKTEPMEDSGISLKAAAVSVKKESED 899
           RPFL            TDA R    P++S  P++VKTEPMEDSG S +AAA+ +K ESED
Sbjct: 178 RPFLGAESQLGGLGMVTDAGRPTVPPNDSYGPVSVKTEPMEDSGTSPRAAAMLIKTESED 237

Query: 900 PNYYQHNMQDSHHSSGSN 953
           PNY   N+Q S H S S+
Sbjct: 238 PNYNVCNVQGSQHFSASS 255



 Score = 56.2 bits (134), Expect = 4e-08
 Identities = 28/76 (36%), Positives = 45/76 (59%)
 Frame = +3

Query: 498 LRKAVEDYFCFCYGKALGTTAMVPVPYEKLLKDQAAVVVQGLPEGVPFQHPENYDLATLK 677
           LR+ V D F   +G+A+G    V VPY K+  +   VV+ G+P GV F+ P   ++++++
Sbjct: 328 LREQVNDLFSRKFGEAIGVDFPVKVPYRKITFNPGCVVIDGMPPGVVFKAPGYLEISSMR 387

Query: 678 WILENKAGISFTINRP 725
            IL+    I FT+ RP
Sbjct: 388 RILDAADFIKFTVIRP 403


>ref|NP_001074939.1| general transcription factor II-I repeat domain-containing protein
           1 isoform i [Mus musculus].
          Length = 942

 Score =  134 bits (337), Expect = 1e-31
 Identities = 69/174 (39%), Positives = 101/174 (58%), Gaps = 13/174 (7%)
 Frame = +3

Query: 243 VVTFLVSALESMCKELAKSKAEVACIAMYEADVFVVGTEKGRAFVNARTDLQKDFAKYCV 422
           ++  LVSAL+SMC  L+K   EVAC+A++   VFV+GTEKGR F+N R +LQ DF ++C 
Sbjct: 30  LINSLVSALDSMCSALSKLNTEVACVAVHNESVFVMGTEKGRVFLNTRKELQSDFLRFCR 89

Query: 423 AEGLPEVKPPHPVNGMQIDSG-------------ETEILRKAVEDYFCFCYGKALGTTAM 563
                + +  HP    + + G             +  +L+K VE+ F   Y +A+G   +
Sbjct: 90  GPLWNDPEAGHPKKVQRCEGGGRSLPRSSLEQCSDVYLLQKMVEEVFDVLYSEAMGRATV 149

Query: 564 VPVPYEKLLKDQAAVVVQGLPEGVPFQHPENYDLATLKWILENKAGISFTINRP 725
           VP+PYE+LL++   + VQGLPEG+ F+ P  YD   L  ILE+   I F + RP
Sbjct: 150 VPLPYERLLREPGLLAVQGLPEGLAFRRPAEYDPKALMAILEHSHRIRFKLRRP 203



 Score = 64.7 bits (156), Expect = 1e-10
 Identities = 34/77 (44%), Positives = 45/77 (58%)
 Frame = +3

Query: 498 LRKAVEDYFCFCYGKALGTTAMVPVPYEKLLKDQAAVVVQGLPEGVPFQHPENYDLATLK 677
           LR+ V+  F   Y +ALG   MVPVPY K+  D  AV + G+P+ +PF+ P  Y +  LK
Sbjct: 351 LRECVQILFNSRYAEALGLDHMVPVPYRKIACDPEAVEIVGIPDKIPFKRPCTYGVPKLK 410

Query: 678 WILENKAGISFTINRPF 728
            ILE +  I F I R F
Sbjct: 411 RILEERHSIHFIIKRMF 427



 Score = 64.3 bits (155), Expect = 1e-10
 Identities = 34/86 (39%), Positives = 51/86 (59%)
 Frame = +3

Query: 471 QIDSGETEILRKAVEDYFCFCYGKALGTTAMVPVPYEKLLKDQAAVVVQGLPEGVPFQHP 650
           +ID   T  LR+ V+D F   YG+ALG    V VPY+++  +  +V+++GLP G+PF+ P
Sbjct: 683 RIDIANT--LREQVQDLFNKKYGEALGIKYPVQVPYKRIKSNPGSVIIEGLPPGIPFRKP 740

Query: 651 ENYDLATLKWILENKAGISFTINRPF 728
             +    L+ IL     I FT+ RPF
Sbjct: 741 CTFGSQNLERILSVADKIKFTVTRPF 766



 Score = 62.8 bits (151), Expect = 4e-10
 Identities = 35/78 (44%), Positives = 43/78 (55%)
 Frame = +3

Query: 498 LRKAVEDYFCFCYGKALGTTAMVPVPYEKLLKDQAAVVVQGLPEGVPFQHPENYDLATLK 677
           LRK VE  F   Y KA+GT+  V VPY K L     + V GLPEG+  + P  + +A L+
Sbjct: 565 LRKQVEMLFNTKYAKAIGTSEPVKVPYSKFLMHPEELFVLGLPEGISLRRPNCFGIAKLR 624

Query: 678 WILENKAGISFTINRPFL 731
            ILE    I F I RP L
Sbjct: 625 KILEASNSIQFVIKRPEL 642



 Score = 59.3 bits (142), Expect = 4e-09
 Identities = 31/78 (39%), Positives = 47/78 (60%)
 Frame = +3

Query: 483  GETEILRKAVEDYFCFCYGKALGTTAMVPVPYEKLLKDQAAVVVQGLPEGVPFQHPENYD 662
            GE  ILR+ V++ F   YG+ALG    V VPY+ +     AV V+GLP+ +PF++P  YD
Sbjct: 782  GEKVILREQVKELFNEKYGEALGLNRPVLVPYKLIRDSPDAVEVKGLPDDIPFRNPNTYD 841

Query: 663  LATLKWILENKAGISFTI 716
            +  L+ IL+ +  +   I
Sbjct: 842  IHRLEKILKAREHVRMVI 859


>ref|NP_001074938.1| general transcription factor II-I repeat domain-containing protein
           1 isoform h [Mus musculus].
          Length = 969

 Score =  134 bits (337), Expect = 1e-31
 Identities = 69/174 (39%), Positives = 101/174 (58%), Gaps = 13/174 (7%)
 Frame = +3

Query: 243 VVTFLVSALESMCKELAKSKAEVACIAMYEADVFVVGTEKGRAFVNARTDLQKDFAKYCV 422
           ++  LVSAL+SMC  L+K   EVAC+A++   VFV+GTEKGR F+N R +LQ DF ++C 
Sbjct: 30  LINSLVSALDSMCSALSKLNTEVACVAVHNESVFVMGTEKGRVFLNTRKELQSDFLRFCR 89

Query: 423 AEGLPEVKPPHPVNGMQIDSG-------------ETEILRKAVEDYFCFCYGKALGTTAM 563
                + +  HP    + + G             +  +L+K VE+ F   Y +A+G   +
Sbjct: 90  GPLWNDPEAGHPKKVQRCEGGGRSLPRSSLEQCSDVYLLQKMVEEVFDVLYSEAMGRATV 149

Query: 564 VPVPYEKLLKDQAAVVVQGLPEGVPFQHPENYDLATLKWILENKAGISFTINRP 725
           VP+PYE+LL++   + VQGLPEG+ F+ P  YD   L  ILE+   I F + RP
Sbjct: 150 VPLPYERLLREPGLLAVQGLPEGLAFRRPAEYDPKALMAILEHSHRIRFKLRRP 203



 Score = 64.7 bits (156), Expect = 1e-10
 Identities = 34/77 (44%), Positives = 45/77 (58%)
 Frame = +3

Query: 498 LRKAVEDYFCFCYGKALGTTAMVPVPYEKLLKDQAAVVVQGLPEGVPFQHPENYDLATLK 677
           LR+ V+  F   Y +ALG   MVPVPY K+  D  AV + G+P+ +PF+ P  Y +  LK
Sbjct: 351 LRECVQILFNSRYAEALGLDHMVPVPYRKIACDPEAVEIVGIPDKIPFKRPCTYGVPKLK 410

Query: 678 WILENKAGISFTINRPF 728
            ILE +  I F I R F
Sbjct: 411 RILEERHSIHFIIKRMF 427



 Score = 64.3 bits (155), Expect = 1e-10
 Identities = 34/86 (39%), Positives = 51/86 (59%)
 Frame = +3

Query: 471 QIDSGETEILRKAVEDYFCFCYGKALGTTAMVPVPYEKLLKDQAAVVVQGLPEGVPFQHP 650
           +ID   T  LR+ V+D F   YG+ALG    V VPY+++  +  +V+++GLP G+PF+ P
Sbjct: 683 RIDIANT--LREQVQDLFNKKYGEALGIKYPVQVPYKRIKSNPGSVIIEGLPPGIPFRKP 740

Query: 651 ENYDLATLKWILENKAGISFTINRPF 728
             +    L+ IL     I FT+ RPF
Sbjct: 741 CTFGSQNLERILSVADKIKFTVTRPF 766



 Score = 62.8 bits (151), Expect = 4e-10
 Identities = 35/78 (44%), Positives = 43/78 (55%)
 Frame = +3

Query: 498 LRKAVEDYFCFCYGKALGTTAMVPVPYEKLLKDQAAVVVQGLPEGVPFQHPENYDLATLK 677
           LRK VE  F   Y KA+GT+  V VPY K L     + V GLPEG+  + P  + +A L+
Sbjct: 565 LRKQVEMLFNTKYAKAIGTSEPVKVPYSKFLMHPEELFVLGLPEGISLRRPNCFGIAKLR 624

Query: 678 WILENKAGISFTINRPFL 731
            ILE    I F I RP L
Sbjct: 625 KILEASNSIQFVIKRPEL 642



 Score = 59.3 bits (142), Expect = 4e-09
 Identities = 31/78 (39%), Positives = 47/78 (60%)
 Frame = +3

Query: 483  GETEILRKAVEDYFCFCYGKALGTTAMVPVPYEKLLKDQAAVVVQGLPEGVPFQHPENYD 662
            GE  ILR+ V++ F   YG+ALG    V VPY+ +     AV V+GLP+ +PF++P  YD
Sbjct: 809  GEKVILREQVKELFNEKYGEALGLNRPVLVPYKLIRDSPDAVEVKGLPDDIPFRNPNTYD 868

Query: 663  LATLKWILENKAGISFTI 716
            +  L+ IL+ +  +   I
Sbjct: 869  IHRLEKILKAREHVRMVI 886


>ref|NP_001074937.1| general transcription factor II-I repeat domain-containing protein
           1 isoform g [Mus musculus].
          Length = 974

 Score =  134 bits (337), Expect = 1e-31
 Identities = 69/174 (39%), Positives = 101/174 (58%), Gaps = 13/174 (7%)
 Frame = +3

Query: 243 VVTFLVSALESMCKELAKSKAEVACIAMYEADVFVVGTEKGRAFVNARTDLQKDFAKYCV 422
           ++  LVSAL+SMC  L+K   EVAC+A++   VFV+GTEKGR F+N R +LQ DF ++C 
Sbjct: 30  LINSLVSALDSMCSALSKLNTEVACVAVHNESVFVMGTEKGRVFLNTRKELQSDFLRFCR 89

Query: 423 AEGLPEVKPPHPVNGMQIDSG-------------ETEILRKAVEDYFCFCYGKALGTTAM 563
                + +  HP    + + G             +  +L+K VE+ F   Y +A+G   +
Sbjct: 90  GPLWNDPEAGHPKKVQRCEGGGRSLPRSSLEQCSDVYLLQKMVEEVFDVLYSEAMGRATV 149

Query: 564 VPVPYEKLLKDQAAVVVQGLPEGVPFQHPENYDLATLKWILENKAGISFTINRP 725
           VP+PYE+LL++   + VQGLPEG+ F+ P  YD   L  ILE+   I F + RP
Sbjct: 150 VPLPYERLLREPGLLAVQGLPEGLAFRRPAEYDPKALMAILEHSHRIRFKLRRP 203



 Score = 64.7 bits (156), Expect = 1e-10
 Identities = 34/77 (44%), Positives = 45/77 (58%)
 Frame = +3

Query: 498 LRKAVEDYFCFCYGKALGTTAMVPVPYEKLLKDQAAVVVQGLPEGVPFQHPENYDLATLK 677
           LR+ V+  F   Y +ALG   MVPVPY K+  D  AV + G+P+ +PF+ P  Y +  LK
Sbjct: 351 LRECVQILFNSRYAEALGLDHMVPVPYRKIACDPEAVEIVGIPDKIPFKRPCTYGVPKLK 410

Query: 678 WILENKAGISFTINRPF 728
            ILE +  I F I R F
Sbjct: 411 RILEERHSIHFIIKRMF 427



 Score = 62.8 bits (151), Expect = 4e-10
 Identities = 35/78 (44%), Positives = 43/78 (55%)
 Frame = +3

Query: 498 LRKAVEDYFCFCYGKALGTTAMVPVPYEKLLKDQAAVVVQGLPEGVPFQHPENYDLATLK 677
           LRK VE  F   Y KA+GT+  V VPY K L     + V GLPEG+  + P  + +A L+
Sbjct: 565 LRKQVEMLFNTKYAKAIGTSEPVKVPYSKFLMHPEELFVLGLPEGISLRRPNCFGIAKLR 624

Query: 678 WILENKAGISFTINRPFL 731
            ILE    I F I RP L
Sbjct: 625 KILEASNSIQFVIKRPEL 642



 Score = 59.3 bits (142), Expect = 4e-09
 Identities = 31/78 (39%), Positives = 47/78 (60%)
 Frame = +3

Query: 483 GETEILRKAVEDYFCFCYGKALGTTAMVPVPYEKLLKDQAAVVVQGLPEGVPFQHPENYD 662
           GE  ILR+ V++ F   YG+ALG    V VPY+ +     AV V+GLP+ +PF++P  YD
Sbjct: 711 GEKVILREQVKELFNEKYGEALGLNRPVLVPYKLIRDSPDAVEVKGLPDDIPFRNPNTYD 770

Query: 663 LATLKWILENKAGISFTI 716
           +  L+ IL+ +  +   I
Sbjct: 771 IHRLEKILKAREHVRMVI 788



 Score = 58.5 bits (140), Expect = 7e-09
 Identities = 35/104 (33%), Positives = 56/104 (53%)
 Frame = +3

Query: 405  FAKYCVAEGLPEVKPPHPVNGMQIDSGETEILRKAVEDYFCFCYGKALGTTAMVPVPYEK 584
            FA+ C    +PE    + +       G+  ILR+ V++ F   YG+ALG    V VPY+ 
Sbjct: 795  FAEVCNDPKVPEEDDSNKL-------GKKVILREQVKELFNEKYGEALGLNRPVLVPYKL 847

Query: 585  LLKDQAAVVVQGLPEGVPFQHPENYDLATLKWILENKAGISFTI 716
            +     AV V+GLP+ +PF++P  YD+  L+ IL+ +  +   I
Sbjct: 848  IRDSPDAVEVKGLPDDIPFRNPNTYDIHRLEKILKAREHVRMVI 891


>ref|NP_001074936.1| general transcription factor II-I repeat domain-containing protein
           1 isoform f [Mus musculus].
          Length = 1001

 Score =  134 bits (337), Expect = 1e-31
 Identities = 69/174 (39%), Positives = 101/174 (58%), Gaps = 13/174 (7%)
 Frame = +3

Query: 243 VVTFLVSALESMCKELAKSKAEVACIAMYEADVFVVGTEKGRAFVNARTDLQKDFAKYCV 422
           ++  LVSAL+SMC  L+K   EVAC+A++   VFV+GTEKGR F+N R +LQ DF ++C 
Sbjct: 30  LINSLVSALDSMCSALSKLNTEVACVAVHNESVFVMGTEKGRVFLNTRKELQSDFLRFCR 89

Query: 423 AEGLPEVKPPHPVNGMQIDSG-------------ETEILRKAVEDYFCFCYGKALGTTAM 563
                + +  HP    + + G             +  +L+K VE+ F   Y +A+G   +
Sbjct: 90  GPLWNDPEAGHPKKVQRCEGGGRSLPRSSLEQCSDVYLLQKMVEEVFDVLYSEAMGRATV 149

Query: 564 VPVPYEKLLKDQAAVVVQGLPEGVPFQHPENYDLATLKWILENKAGISFTINRP 725
           VP+PYE+LL++   + VQGLPEG+ F+ P  YD   L  ILE+   I F + RP
Sbjct: 150 VPLPYERLLREPGLLAVQGLPEGLAFRRPAEYDPKALMAILEHSHRIRFKLRRP 203



 Score = 64.7 bits (156), Expect = 1e-10
 Identities = 34/77 (44%), Positives = 45/77 (58%)
 Frame = +3

Query: 498 LRKAVEDYFCFCYGKALGTTAMVPVPYEKLLKDQAAVVVQGLPEGVPFQHPENYDLATLK 677
           LR+ V+  F   Y +ALG   MVPVPY K+  D  AV + G+P+ +PF+ P  Y +  LK
Sbjct: 351 LRECVQILFNSRYAEALGLDHMVPVPYRKIACDPEAVEIVGIPDKIPFKRPCTYGVPKLK 410

Query: 678 WILENKAGISFTINRPF 728
            ILE +  I F I R F
Sbjct: 411 RILEERHSIHFIIKRMF 427



 Score = 64.3 bits (155), Expect = 1e-10
 Identities = 34/86 (39%), Positives = 51/86 (59%)
 Frame = +3

Query: 471 QIDSGETEILRKAVEDYFCFCYGKALGTTAMVPVPYEKLLKDQAAVVVQGLPEGVPFQHP 650
           +ID   T  LR+ V+D F   YG+ALG    V VPY+++  +  +V+++GLP G+PF+ P
Sbjct: 683 RIDIANT--LREQVQDLFNKKYGEALGIKYPVQVPYKRIKSNPGSVIIEGLPPGIPFRKP 740

Query: 651 ENYDLATLKWILENKAGISFTINRPF 728
             +    L+ IL     I FT+ RPF
Sbjct: 741 CTFGSQNLERILSVADKIKFTVTRPF 766



 Score = 62.8 bits (151), Expect = 4e-10
 Identities = 35/78 (44%), Positives = 43/78 (55%)
 Frame = +3

Query: 498 LRKAVEDYFCFCYGKALGTTAMVPVPYEKLLKDQAAVVVQGLPEGVPFQHPENYDLATLK 677
           LRK VE  F   Y KA+GT+  V VPY K L     + V GLPEG+  + P  + +A L+
Sbjct: 565 LRKQVEMLFNTKYAKAIGTSEPVKVPYSKFLMHPEELFVLGLPEGISLRRPNCFGIAKLR 624

Query: 678 WILENKAGISFTINRPFL 731
            ILE    I F I RP L
Sbjct: 625 KILEASNSIQFVIKRPEL 642



 Score = 59.3 bits (142), Expect = 4e-09
 Identities = 31/78 (39%), Positives = 47/78 (60%)
 Frame = +3

Query: 483  GETEILRKAVEDYFCFCYGKALGTTAMVPVPYEKLLKDQAAVVVQGLPEGVPFQHPENYD 662
            GE  ILR+ V++ F   YG+ALG    V VPY+ +     AV V+GLP+ +PF++P  YD
Sbjct: 809  GEKVILREQVKELFNEKYGEALGLNRPVLVPYKLIRDSPDAVEVKGLPDDIPFRNPNTYD 868

Query: 663  LATLKWILENKAGISFTI 716
            +  L+ IL+ +  +   I
Sbjct: 869  IHRLEKILKAREHVRMVI 886


  Database: RefSeq49_MP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 15,617,559
  Number of sequences in database:  30,036
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 32,648,038
Number of extensions: 904557
Number of successful extensions: 3243
Number of sequences better than 1.0e-05: 16
Number of HSP's gapped: 3202
Number of HSP's successfully gapped: 88
Length of query: 318
Length of database: 15,617,559
Length adjustment: 101
Effective length of query: 217
Effective length of database: 12,583,923
Effective search space: 2730711291
Effective search space used: 2730711291
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-004236
         (955 letters)

Database: RefSeq49_SP.fasta 
           24,897 sequences; 11,343,932 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|XP_003354560.1| PREDICTED: general transcription factor II-I...   484   e-137
Alignment   gi|XP_003361269.1| PREDICTED: general transcription factor II-I...   223   1e-58
Alignment   gi|XP_003124462.2| PREDICTED: general transcription factor II-I...    75   4e-14
Alignment   gi|XP_003124473.2| PREDICTED: general transcription factor II-I...    61   1e-09

>ref|XP_003354560.1| PREDICTED: general transcription factor II-I repeat
           domain-containing protein 2A [Sus scrofa].
          Length = 510

 Score =  484 bits (1246), Expect = e-137
 Identities = 244/258 (94%), Positives = 245/258 (94%)
 Frame = +3

Query: 180 MAQVAMSTLPVENEESSDSRMVVTFLVSALESMCKELAKSKAEVACIAMYEADVFVVGTE 359
           MAQVAMSTLPVENEESSDSRMVVTFLVSALESMCKELAKSKAEVACIAMYEADVFVVGTE
Sbjct: 1   MAQVAMSTLPVENEESSDSRMVVTFLVSALESMCKELAKSKAEVACIAMYEADVFVVGTE 60

Query: 360 KGRAFVNARTDLQKDFAKYCVAEGLPEVKPPHPVNGMQIDSGETEILRKAVEDYFCFCYG 539
           KGRAFVNARTDLQKDFAKYCVAEGLPEVKPPHPVNGMQIDSGETEILRKAVEDYFCFCYG
Sbjct: 61  KGRAFVNARTDLQKDFAKYCVAEGLPEVKPPHPVNGMQIDSGETEILRKAVEDYFCFCYG 120

Query: 540 KALGTTAMVPVPYEKLLKDQAAVVVQGLPEGVPFQHPENYDLATLKWILENKAGISFTIN 719
           KALGTTAMVPVPYEKLLKDQAAVVVQGLPEGVPFQHPENYDLATLKWILENKAGISFTIN
Sbjct: 121 KALGTTAMVPVPYEKLLKDQAAVVVQGLPEGVPFQHPENYDLATLKWILENKAGISFTIN 180

Query: 720 RPFLXXXXXXXXXXXXTDAVRSVTSPSESCVPINVKTEPMEDSGISLKAAAVSVKKESED 899
           RPFL            TDAVRSVTSPSESCVPINVKTEPMEDSGISLKAAAVSVKKESED
Sbjct: 181 RPFLGPVNPPGGPGVVTDAVRSVTSPSESCVPINVKTEPMEDSGISLKAAAVSVKKESED 240

Query: 900 PNYYQHNMQDSHHSSGSN 953
           PNYYQ+NMQDSHHSS SN
Sbjct: 241 PNYYQYNMQDSHHSSASN 258



 Score = 56.6 bits (135), Expect = 2e-08
 Identities = 28/76 (36%), Positives = 45/76 (59%)
 Frame = +3

Query: 498 LRKAVEDYFCFCYGKALGTTAMVPVPYEKLLKDQAAVVVQGLPEGVPFQHPENYDLATLK 677
           LR+ V D F   +G+A+G    V VPY K+  +   VV+ G+P GV F+ P   ++++++
Sbjct: 331 LREQVNDLFSRKFGEAIGVDFPVKVPYRKITFNPGCVVIDGMPPGVVFKAPGYLEISSMR 390

Query: 678 WILENKAGISFTINRP 725
            IL+    I FT+ RP
Sbjct: 391 RILDAAEFIKFTVIRP 406


>ref|XP_003361269.1| PREDICTED: general transcription factor II-I-like, partial [Sus
           scrofa].
          Length = 483

 Score =  223 bits (568), Expect = 1e-58
 Identities = 116/197 (58%), Positives = 134/197 (68%), Gaps = 20/197 (10%)
 Frame = +3

Query: 423 AEGLPEVKPPHPVNGMQIDSGETEILRKAVEDYFCFCYGKALGTTAMVPVPYEKLLKDQA 602
           A  + ++K     N M +D+ E E LRK VEDYFCFCYGKALG + +VPVPYEK+L+DQ+
Sbjct: 7   AAEMHKMKSTTQANRMSVDAVEIETLRKTVEDYFCFCYGKALGKSTVVPVPYEKMLRDQS 66

Query: 603 AVVVQGLPEGVPFQHPENYDLATLKWILENKAGISFTINRPFLXXXXXXXXXXXXTDAVR 782
           AVVVQGLPEGV F+HPENYDLATLKWILENKAGISF I RPFL            TD  R
Sbjct: 67  AVVVQGLPEGVAFKHPENYDLATLKWILENKAGISFIIKRPFLEPKKHLGGRVMVTDTER 126

Query: 783 SVTSPSESCVPINVKTEPMEDSGISLKAAAVSVKKESEDPNYYQHN-------------- 920
           S+ SP  SC PI VKTEP EDSGISL+ AAV+VK+ESEDP+YYQ+N              
Sbjct: 127 SMLSPGGSCGPIKVKTEPTEDSGISLEMAAVTVKEESEDPDYYQYNIQAGPSETDDVDDK 186

Query: 921 ------MQDSHHSSGSN 953
                 +Q SHHSS  N
Sbjct: 187 LPLSKSLQGSHHSSEGN 203



 Score = 59.3 bits (142), Expect = 3e-09
 Identities = 31/78 (39%), Positives = 44/78 (56%)
 Frame = +3

Query: 498 LRKAVEDYFCFCYGKALGTTAMVPVPYEKLLKDQAAVVVQGLPEGVPFQHPENYDLATLK 677
           LRK V+  FC  + +ALG+T    VPY+K       + V+GLPE +PF+ P  Y +  L+
Sbjct: 386 LRKMVDQLFCKKFAEALGSTEAKAVPYQKFEAHPNDLYVEGLPENIPFRSPSWYGIPRLE 445

Query: 678 WILENKAGISFTINRPFL 731
            I++    I F I RP L
Sbjct: 446 KIIQVGNRIKFVIKRPEL 463



 Score = 52.0 bits (123), Expect = 5e-07
 Identities = 28/75 (37%), Positives = 39/75 (52%)
 Frame = +3

Query: 498 LRKAVEDYFCFCYGKALGTTAMVPVPYEKLLKDQAAVVVQGLPEGVPFQHPENYDLATLK 677
           LRK VE+ F   Y +A+     V +PY         + V+GLPEG+PF+ P  Y +  L+
Sbjct: 281 LRKQVEELFERKYAQAIKAKGPVTIPYPLFQSHVEDLYVEGLPEGIPFRRPSTYGIPRLE 340

Query: 678 WILENKAGISFTINR 722
            IL  K  I F I +
Sbjct: 341 RILLAKERIRFVIKK 355


>ref|XP_003124462.2| PREDICTED: general transcription factor II-I repeat
           domain-containing protein 1 [Sus scrofa].
          Length = 787

 Score = 75.5 bits (184), Expect = 4e-14
 Identities = 36/77 (46%), Positives = 50/77 (64%)
 Frame = +3

Query: 495 ILRKAVEDYFCFCYGKALGTTAMVPVPYEKLLKDQAAVVVQGLPEGVPFQHPENYDLATL 674
           +LRK VE+ F   Y +ALG  ++VP+PYE+LL++   + VQGLPEG+ F+ P  YD   L
Sbjct: 67  LLRKMVEEVFDVLYSEALGRASVVPLPYERLLREPGLLAVQGLPEGLAFRRPAEYDPKAL 126

Query: 675 KWILENKAGISFTINRP 725
             ILE+   I F + RP
Sbjct: 127 MAILEHSHRIRFKLKRP 143



 Score = 65.5 bits (158), Expect = 4e-11
 Identities = 34/84 (40%), Positives = 48/84 (57%)
 Frame = +3

Query: 477 DSGETEILRKAVEDYFCFCYGKALGTTAMVPVPYEKLLKDQAAVVVQGLPEGVPFQHPEN 656
           ++ +   LR+ V+  F   Y +ALG   MVPVPY K+  D  AV + G+P+ +PF+ P  
Sbjct: 284 ETRDINTLRECVQILFNSRYAEALGLDHMVPVPYRKIACDPEAVEIVGIPDKIPFKRPCT 343

Query: 657 YDLATLKWILENKAGISFTINRPF 728
           Y +  LK ILE +  I F I R F
Sbjct: 344 YGVPKLKRILEERHSIHFVIKRMF 367



 Score = 56.6 bits (135), Expect = 2e-08
 Identities = 37/96 (38%), Positives = 47/96 (48%)
 Frame = +3

Query: 435 PEVKPPHPVNGMQIDSGETEILRKAVEDYFCFCYGKALGTTAMVPVPYEKLLKDQAAVVV 614
           PE +P    +G  I       LRK VE  F   Y KA+G +  V VPY K L     + V
Sbjct: 489 PEERPVEDSHGDVIRP-----LRKQVELLFNTRYAKAIGISEPVKVPYSKFLMYPEELFV 543

Query: 615 QGLPEGVPFQHPENYDLATLKWILENKAGISFTINR 722
            GLPEG+  + P  + +A L+ ILE    I F I R
Sbjct: 544 VGLPEGISLRRPNCFGIAKLRKILEASNSIQFVIKR 579


>ref|XP_003124473.2| PREDICTED: general transcription factor II-I, partial [Sus scrofa].
          Length = 535

 Score = 60.8 bits (146), Expect = 1e-09
 Identities = 30/77 (38%), Positives = 47/77 (61%)
 Frame = +3

Query: 498 LRKAVEDYFCFCYGKALGTTAMVPVPYEKLLKDQAAVVVQGLPEGVPFQHPENYDLATLK 677
           LR+ V D F   +G+A+G    V VPY K+  +   VVV G+P GV F+ P   ++++++
Sbjct: 405 LREQVNDLFSRKFGEAIGMGFPVKVPYRKITINPGCVVVDGMPPGVSFKAPSYLEISSMR 464

Query: 678 WILENKAGISFTINRPF 728
            IL++   I FT+ RPF
Sbjct: 465 RILDSAEFIKFTVIRPF 481



 Score = 56.6 bits (135), Expect = 2e-08
 Identities = 29/78 (37%), Positives = 43/78 (55%)
 Frame = +3

Query: 498 LRKAVEDYFCFCYGKALGTTAMVPVPYEKLLKDQAAVVVQGLPEGVPFQHPENYDLATLK 677
           LRK VE+ F   + +ALG T  V VPY     +   + V+GLPEG+PF+ P  + +  L+
Sbjct: 107 LRKQVEEIFNLKFAQALGLTEAVKVPYPVFESNPEFLYVEGLPEGIPFRSPTWFGIPRLE 166

Query: 678 WILENKAGISFTINRPFL 731
            I+     I F + +P L
Sbjct: 167 RIVRGSNKIKFVVKKPEL 184



 Score = 56.6 bits (135), Expect = 2e-08
 Identities = 31/76 (40%), Positives = 42/76 (55%)
 Frame = +3

Query: 498 LRKAVEDYFCFCYGKALGTTAMVPVPYEKLLKDQAAVVVQGLPEGVPFQHPENYDLATLK 677
           L++ VE+ F    G+ALG    V VP+           V+GLPEGVPF+ P  + +  L+
Sbjct: 269 LKQKVENLFNEKCGEALGLKQAVKVPFALFESFPEDFYVEGLPEGVPFRRPSTFGIPRLE 328

Query: 678 WILENKAGISFTINRP 725
            IL NKA I F I +P
Sbjct: 329 KILRNKAKIKFIIKKP 344



 Score = 52.8 bits (125), Expect = 3e-07
 Identities = 27/68 (39%), Positives = 38/68 (55%)
 Frame = +3

Query: 528 FCYGKALGTTAMVPVPYEKLLKDQAAVVVQGLPEGVPFQHPENYDLATLKWILENKAGIS 707
           FC  +ALG+T    VPY+K       + V+GLPE +PF+ P  Y +  L+ I++    I 
Sbjct: 12  FCKAEALGSTEAKAVPYQKFEAHPNDLYVEGLPENIPFRSPSWYGIPRLEKIIQVGNRIK 71

Query: 708 FTINRPFL 731
           F I RP L
Sbjct: 72  FVIKRPEL 79


  Database: RefSeq49_SP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 11,343,932
  Number of sequences in database:  24,897
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 24,287,616
Number of extensions: 687998
Number of successful extensions: 2557
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 2553
Number of HSP's successfully gapped: 12
Length of query: 318
Length of database: 11,343,932
Length adjustment: 99
Effective length of query: 219
Effective length of database: 8,879,129
Effective search space: 1944529251
Effective search space used: 1944529251
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 33 (17.3 bits)

BLASTN 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-004236
         (955 letters)

Database: Sscrofa_10.2.fasta 
           4582 sequences; 2,808,509,378 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Sscrofa_Chr03                                                         369   2e-99
gb|GL893920.2| Sus scrofa unplaced genomic scaffold ChrUScaf1805      117   1e-23

>Sscrofa_Chr03 
||          Length = 144787322

 Score =  369 bits (186), Expect = 2e-99
 Identities = 186/186 (100%)
 Strand = Plus / Minus

                                                                            
Query: 537      ggtaaagccctggggacgacggcgatggtgcctgttccgtatgagaagctgctgaaggac 596
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11589182 ggtaaagccctggggacgacggcgatggtgcctgttccgtatgagaagctgctgaaggac 11589123

                                                                            
Query: 597      caggcagctgtggtggtgcaggggctcccagaaggggtcccctttcaacaccctgagaac 656
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11589122 caggcagctgtggtggtgcaggggctcccagaaggggtcccctttcaacaccctgagaac 11589063

                                                                            
Query: 657      tacgaccttgcaaccctgaagtggattttggagaacaaagcggggatttcgttcaccatc 716
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11589062 tacgaccttgcaaccctgaagtggattttggagaacaaagcggggatttcgttcaccatc 11589003

                      
Query: 717      aatagg 722
                ||||||
Sbjct: 11589002 aatagg 11588997



 Score =  341 bits (172), Expect = 4e-91
 Identities = 172/172 (100%)
 Strand = Plus / Minus

                                                                            
Query: 4        gaaagagaaaaaggagggatagtggagcgcagggcttcggccgccacccacacgcagcgt 63
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11617056 gaaagagaaaaaggagggatagtggagcgcagggcttcggccgccacccacacgcagcgt 11616997

                                                                            
Query: 64       cctcgcctcatcgcggtcacggccgccgccctcggccccccgccactcccgggtggccca 123
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11616996 cctcgcctcatcgcggtcacggccgccgccctcggccccccgccactcccgggtggccca 11616937

                                                                    
Query: 124      gccctcggaccccgcgaccggcagggcgctgcccgccggcggggacctcagg 175
                ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11616936 gccctcggaccccgcgaccggcagggcgctgcccgccggcggggacctcagg 11616885



 Score =  281 bits (142), Expect = 3e-73
 Identities = 142/142 (100%)
 Strand = Plus / Minus

                                                                            
Query: 278      gtgtaaagagctggccaagtccaaagcagaggtggcctgcatcgcaatgtatgaggcaga 337
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11601654 gtgtaaagagctggccaagtccaaagcagaggtggcctgcatcgcaatgtatgaggcaga 11601595

                                                                            
Query: 338      cgtgtttgtcgtgggcacggagaagggacgtgcttttgtgaacgccaggacggatctgca 397
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11601594 cgtgtttgtcgtgggcacggagaagggacgtgcttttgtgaacgccaggacggatctgca 11601535

                                      
Query: 398      gaaggattttgcaaaatactgt 419
                ||||||||||||||||||||||
Sbjct: 11601534 gaaggattttgcaaaatactgt 11601513



 Score =  210 bits (106), Expect = 1e-51
 Identities = 120/127 (94%)
 Strand = Plus / Minus

                                                                            
Query: 418      gtgttgccgaagggctgcccgaggtgaaannnnnnnatcctgtcaacgggatgcagatcg 477
                |||||||||||||||||||||||||||||       ||||||||||||||||||||||||
Sbjct: 11590730 gtgttgccgaagggctgcccgaggtgaaacccccccatcctgtcaacgggatgcagatcg 11590671

                                                                            
Query: 478      actcaggggaaacggaaatactcagaaaagccgtggaggactatttctgcttttgttacg 537
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11590670 actcaggggaaacggaaatactcagaaaagccgtggaggactatttctgcttttgttacg 11590611

                       
Query: 538      gtaaagc 544
                |||||||
Sbjct: 11590610 gtaaagc 11590604



 Score =  210 bits (106), Expect = 1e-51
 Identities = 106/106 (100%)
 Strand = Plus / Minus

                                                                            
Query: 173      agggatcatggcccaagtcgcaatgtccaccctgcccgtcgaaaacgaggagtcctcgga 232
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11603280 agggatcatggcccaagtcgcaatgtccaccctgcccgtcgaaaacgaggagtcctcgga 11603221

                                                              
Query: 233      cagcaggatggtggtgacattcctcgtgtctgcgctggagtccatg 278
                ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11603220 cagcaggatggtggtgacattcctcgtgtctgcgctggagtccatg 11603175



 Score =  149 bits (75), Expect = 3e-33
 Identities = 78/79 (98%)
 Strand = Plus / Minus

                                                                            
Query: 849      ggcatttcactgaaagcagcagctgtgtcagtcaagaaagaatcagaagatcctaattac 908
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11582043 ggcatttcactgaaagcagcagctgtgtcagtcaagaaagaatcagaagatcctaattac 11581984

                                   
Query: 909      tatcagcataatatgcaag 927
                |||||| ||||||||||||
Sbjct: 11581983 tatcagtataatatgcaag 11581965



 Score =  123 bits (62), Expect = 2e-25
 Identities = 95/106 (89%)
 Strand = Plus / Plus

                                                                            
Query: 173      agggatcatggcccaagtcgcaatgtccaccctgcccgtcgaaaacgaggagtcctcgga 232
                ||||||||||||||||||||| |||||||| ||||| || ||| | ||||||||||||||
Sbjct: 11444067 agggatcatggcccaagtcgcgatgtccacgctgcctgttgaagatgaggagtcctcgga 11444126

                                                              
Query: 233      cagcaggatggtggtgacattcctcgtgtctgcgctggagtccatg 278
                 ||||||||||||||||| |||||| ||||||| ||||| ||||||
Sbjct: 11444127 gagcaggatggtggtgacgttcctcatgtctgccctggaatccatg 11444172



 Score =  117 bits (59), Expect = 1e-23
 Identities = 98/111 (88%)
 Strand = Plus / Plus

                                                                            
Query: 601      cagctgtggtggtgcaggggctcccagaaggggtcccctttcaacaccctgagaactacg 660
                ||||||||||||| |||||||| |||||||| ||  ||||| |||| ||||||||||| |
Sbjct: 11454291 cagctgtggtggtacaggggcttccagaaggagttgcctttaaacatcctgagaactatg 11454350

                                                                   
Query: 661      accttgcaaccctgaagtggattttggagaacaaagcggggatttcgttca 711
                | ||||| |||||||||||||||||||||||||| || |||||||| ||||
Sbjct: 11454351 atcttgctaccctgaagtggattttggagaacaaggcagggatttcattca 11454401



 Score =  113 bits (57), Expect = 2e-22
 Identities = 57/57 (100%)
 Strand = Plus / Minus

                                                                         
Query: 749      agggggaccaggggtggtgacagatgctgtgagatctgtgacatcaccaagtgaaag 805
                |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11586520 agggggaccaggggtggtgacagatgctgtgagatctgtgacatcaccaagtgaaag 11586464



 Score = 99.6 bits (50), Expect = 3e-18
 Identities = 116/138 (84%)
 Strand = Plus / Plus

                                                                            
Query: 278      gtgtaaagagctggccaagtccaaagcagaggtggcctgcatcgcaatgtatgaggcaga 337
                ||||||||| ||||||||||||||||| || ||||||||||| ||| |||||||  ||||
Sbjct: 11449858 gtgtaaagaactggccaagtccaaagctgaagtggcctgcattgcagtgtatgaaacaga 11449917

                                                                            
Query: 338      cgtgtttgtcgtgggcacggagaagggacgtgcttttgtgaacgccaggacggatctgca 397
                 || |||||||| || || || |  |||||||||||||| ||| |||| | |||| | ||
Sbjct: 11449918 tgtatttgtcgttggaaccgaaagaggacgtgcttttgtcaacaccagaaaggattttca 11449977

                                  
Query: 398      gaaggattttgcaaaata 415
                ||||||||||| ||||||
Sbjct: 11449978 gaaggattttgtaaaata 11449995



 Score = 93.7 bits (47), Expect = 2e-16
 Identities = 47/47 (100%)
 Strand = Plus / Minus

                                                               
Query: 804      agttgtgtccccatcaacgtgaagacagaacccatggaagattccgg 850
                |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11585879 agttgtgtccccatcaacgtgaagacagaacccatggaagattccgg 11585833



 Score = 63.9 bits (32), Expect = 1e-07
 Identities = 32/32 (100%)
 Strand = Plus / Minus

                                                
Query: 720      aggcctttcctaggtccagtgaatccaccagg 751
                ||||||||||||||||||||||||||||||||
Sbjct: 11588537 aggcctttcctaggtccagtgaatccaccagg 11588506



 Score = 61.9 bits (31), Expect = 6e-07
 Identities = 43/47 (91%)
 Strand = Plus / Plus

                                                               
Query: 867      gcagctgtgtcagtcaagaaagaatcagaagatcctaattactatca 913
                ||||||||| |||| ||| ||||||||||||||||| ||||||||||
Sbjct: 11468946 gcagctgtgacagtaaaggaagaatcagaagatcctgattactatca 11468992


>gb|GL893920.2| Sus scrofa unplaced genomic scaffold ChrUScaf1805
          Length = 45510

 Score =  117 bits (59), Expect = 1e-23
 Identities = 98/111 (88%)
 Strand = Plus / Plus

                                                                        
Query: 601  cagctgtggtggtgcaggggctcccagaaggggtcccctttcaacaccctgagaactacg 660
            ||||||||||||| |||||||| |||||||| ||  ||||| |||| ||||||||||| |
Sbjct: 2273 cagctgtggtggtacaggggcttccagaaggagttgcctttaaacatcctgagaactatg 2332

                                                               
Query: 661  accttgcaaccctgaagtggattttggagaacaaagcggggatttcgttca 711
            | ||||| |||||||||||||||||||||||||| || |||||||| ||||
Sbjct: 2333 atcttgctaccctgaagtggattttggagaacaaggcagggatttcattca 2383



 Score = 61.9 bits (31), Expect = 6e-07
 Identities = 43/47 (91%)
 Strand = Plus / Plus

                                                            
Query: 867   gcagctgtgtcagtcaagaaagaatcagaagatcctaattactatca 913
             ||||||||| |||| ||| ||||||||||||||||| ||||||||||
Sbjct: 14965 gcagctgtgacagtaaaggaagaatcagaagatcctgattactatca 15011


  Database: Sscrofa_10.2.fasta
    Posted date:  Nov 16, 2011 10:34 AM
  Number of letters in database: 2,808,509,378
  Number of sequences in database:  4582
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 24,795,293
Number of extensions: 180
Number of successful extensions: 180
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 179
Number of HSP's successfully gapped: 15
Length of query: 955
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 934
Effective length of database: 2,808,413,156
Effective search space: 2623057887704
Effective search space used: 2623057887704
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 29 (58.0 bits)