Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-004242
(993 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001040078.1| cleft lip and palate transmembrane protein 1... 548 e-156
Alignment gi|NP_001075895.1| cleft lip and palate transmembrane protein 1... 71 2e-12
>ref|NP_001040078.1| cleft lip and palate transmembrane protein 1 homolog [Bos taurus].
Length = 670
Score = 548 bits (1411), Expect = e-156
Identities = 262/296 (88%), Positives = 263/296 (88%)
Frame = +3
Query: 105 QVTSNGSIGRDXXXXXXXXXXXXXXXXXXWQVIKGVLFRIFIIWAISSWFRRXXXXXXXX 284
QVTSNGS+GRD WQVIKGVLFRIFIIWAISSWFRR
Sbjct: 24 QVTSNGSVGRDPPAETQPQNPPPQPAPNAWQVIKGVLFRIFIIWAISSWFRRGPAPQDQA 83
Query: 285 XXXXXXRVASRNLFPKDTLMNLHVYISEHEHFTDFNATSALFWEQHDLVYGDWTSGENSD 464
RVASRNLFPKDTLMNLHVYISEHEHFTDFNATSALFWEQ DLVYGDWTSGENSD
Sbjct: 84 GPGGAPRVASRNLFPKDTLMNLHVYISEHEHFTDFNATSALFWEQQDLVYGDWTSGENSD 143
Query: 465 GCYEHFAELDIPQSVQQNGSIYIHVYFTKSGFHPDPRQKALYRRLATVHMSRMINKYKRR 644
GCYEHFAELDIPQSVQQNGSIYIHVYFTKSGFHPDPRQKALYRRLATVHMSRMINKYKRR
Sbjct: 144 GCYEHFAELDIPQSVQQNGSIYIHVYFTKSGFHPDPRQKALYRRLATVHMSRMINKYKRR 203
Query: 645 RFQKTKNLLTGETEADPEMIKRAEDYGPVEVISHWHPNITINIVDDHTPWVKGSVPPPLD 824
RFQKTKNLLTGETEADPEMIKRAEDYGPVEVISHWHPNITINIVDDHTPWVKGSVPPPLD
Sbjct: 204 RFQKTKNLLTGETEADPEMIKRAEDYGPVEVISHWHPNITINIVDDHTPWVKGSVPPPLD 263
Query: 825 QYVKFDAVSGDYYPIIYFNDYWNLQKDYYPINESLASLPLRVSFCPLSLWRWQLYA 992
QYVKFDAVSGDYYPIIYFNDYWNLQKDYYPINESLASLPLRVSFCPLSLWRWQLYA
Sbjct: 264 QYVKFDAVSGDYYPIIYFNDYWNLQKDYYPINESLASLPLRVSFCPLSLWRWQLYA 319
>ref|NP_001075895.1| cleft lip and palate transmembrane protein 1-like protein [Bos
taurus].
Length = 538
Score = 70.9 bits (172), Expect = 2e-12
Identities = 46/175 (26%), Positives = 81/175 (46%), Gaps = 2/175 (1%)
Frame = +3
Query: 471 YEHFAELDIPQSVQQNGSIYIHVYFTKSGFHPDPRQKALYRRLATVHMSRMINKYKRRRF 650
+E + +P+ + NG++Y +V+ +G P + VH+ + Y R
Sbjct: 86 FERTVNVSVPKKTRNNGTLYAYVFLHHAGVLP-------WNDAKQVHLVSPLTTYMVPRP 138
Query: 651 QKTKNLLTGETEADPEMIKRAEDYGPVEVISHWHPNITINIVDDHTPWVKGSVPPPLDQY 830
++ L G E KR E +SHW P +T+N++ D+ + S+P + +Y
Sbjct: 139 EEVSLLAGGPAAQQIEAEKRPTS-ALDEPVSHWRPRLTLNVMVDNFVFDGASLPADVQRY 197
Query: 831 VKFDAV--SGDYYPIIYFNDYWNLQKDYYPINESLASLPLRVSFCPLSLWRWQLY 989
+K + + Y PI++ + N KD IN S LPL VS+ +SL R + +
Sbjct: 198 MKMIQLGKTVQYLPILFIDQLSNRVKDLMVINRSSTELPLTVSYDKISLGRLRFW 252
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 24,497,476
Number of extensions: 525614
Number of successful extensions: 1872
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 1867
Number of HSP's successfully gapped: 2
Length of query: 331
Length of database: 17,681,374
Length adjustment: 103
Effective length of query: 228
Effective length of database: 14,273,310
Effective search space: 3254314680
Effective search space used: 3254314680
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-004242
(993 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_852578.1| PREDICTED: similar to cleft lip and palate asso... 549 e-156
Alignment gi|XP_865942.1| PREDICTED: similar to cleft lip and palate asso... 549 e-156
Alignment gi|XP_541570.2| PREDICTED: similar to cleft lip and palate asso... 549 e-156
Alignment gi|XP_856612.1| PREDICTED: similar to cisplatin resistance rela... 72 6e-13
Alignment gi|XP_535803.1| PREDICTED: similar to cisplatin resistance rela... 72 6e-13
>ref|XP_852578.1| PREDICTED: similar to cleft lip and palate associated transmembrane
protein 1 isoform 2 [Canis familiaris].
Length = 692
Score = 549 bits (1415), Expect = e-156
Identities = 262/296 (88%), Positives = 263/296 (88%)
Frame = +3
Query: 105 QVTSNGSIGRDXXXXXXXXXXXXXXXXXXWQVIKGVLFRIFIIWAISSWFRRXXXXXXXX 284
QVTSNGSIGRD WQVIKGVLFRIFIIW +SSWFRR
Sbjct: 24 QVTSNGSIGRDPPAETQPQNPPPQPAPNAWQVIKGVLFRIFIIWVVSSWFRRGPAPQDQA 83
Query: 285 XXXXXXRVASRNLFPKDTLMNLHVYISEHEHFTDFNATSALFWEQHDLVYGDWTSGENSD 464
RVASRNLFPKDTLMNLHVYISEHEHFTDFNATSALFWEQHDLVYGDWTSGENSD
Sbjct: 84 GPGGAPRVASRNLFPKDTLMNLHVYISEHEHFTDFNATSALFWEQHDLVYGDWTSGENSD 143
Query: 465 GCYEHFAELDIPQSVQQNGSIYIHVYFTKSGFHPDPRQKALYRRLATVHMSRMINKYKRR 644
GCYEHFAELDIPQSVQQNGSIYIHVYFTKSGFHPDPRQKALYRRLATVHMSRMINKYKRR
Sbjct: 144 GCYEHFAELDIPQSVQQNGSIYIHVYFTKSGFHPDPRQKALYRRLATVHMSRMINKYKRR 203
Query: 645 RFQKTKNLLTGETEADPEMIKRAEDYGPVEVISHWHPNITINIVDDHTPWVKGSVPPPLD 824
RFQKTKNLLTGETEADPEMIKRAEDYGPVEVISHWHPNITINIVDDHTPWVKGSVPPPLD
Sbjct: 204 RFQKTKNLLTGETEADPEMIKRAEDYGPVEVISHWHPNITINIVDDHTPWVKGSVPPPLD 263
Query: 825 QYVKFDAVSGDYYPIIYFNDYWNLQKDYYPINESLASLPLRVSFCPLSLWRWQLYA 992
QYVKFDAVSGDYYPIIYFNDYWNLQKDYYPINESLASLPLRVSFCPLSLWRWQLYA
Sbjct: 264 QYVKFDAVSGDYYPIIYFNDYWNLQKDYYPINESLASLPLRVSFCPLSLWRWQLYA 319
>ref|XP_865942.1| PREDICTED: similar to cleft lip and palate associated transmembrane
protein 1 isoform 4 [Canis familiaris].
Length = 477
Score = 549 bits (1415), Expect = e-156
Identities = 262/296 (88%), Positives = 263/296 (88%)
Frame = +3
Query: 105 QVTSNGSIGRDXXXXXXXXXXXXXXXXXXWQVIKGVLFRIFIIWAISSWFRRXXXXXXXX 284
QVTSNGSIGRD WQVIKGVLFRIFIIW +SSWFRR
Sbjct: 24 QVTSNGSIGRDPPAETQPQNPPPQPAPNAWQVIKGVLFRIFIIWVVSSWFRRGPAPQDQA 83
Query: 285 XXXXXXRVASRNLFPKDTLMNLHVYISEHEHFTDFNATSALFWEQHDLVYGDWTSGENSD 464
RVASRNLFPKDTLMNLHVYISEHEHFTDFNATSALFWEQHDLVYGDWTSGENSD
Sbjct: 84 GPGGAPRVASRNLFPKDTLMNLHVYISEHEHFTDFNATSALFWEQHDLVYGDWTSGENSD 143
Query: 465 GCYEHFAELDIPQSVQQNGSIYIHVYFTKSGFHPDPRQKALYRRLATVHMSRMINKYKRR 644
GCYEHFAELDIPQSVQQNGSIYIHVYFTKSGFHPDPRQKALYRRLATVHMSRMINKYKRR
Sbjct: 144 GCYEHFAELDIPQSVQQNGSIYIHVYFTKSGFHPDPRQKALYRRLATVHMSRMINKYKRR 203
Query: 645 RFQKTKNLLTGETEADPEMIKRAEDYGPVEVISHWHPNITINIVDDHTPWVKGSVPPPLD 824
RFQKTKNLLTGETEADPEMIKRAEDYGPVEVISHWHPNITINIVDDHTPWVKGSVPPPLD
Sbjct: 204 RFQKTKNLLTGETEADPEMIKRAEDYGPVEVISHWHPNITINIVDDHTPWVKGSVPPPLD 263
Query: 825 QYVKFDAVSGDYYPIIYFNDYWNLQKDYYPINESLASLPLRVSFCPLSLWRWQLYA 992
QYVKFDAVSGDYYPIIYFNDYWNLQKDYYPINESLASLPLRVSFCPLSLWRWQLYA
Sbjct: 264 QYVKFDAVSGDYYPIIYFNDYWNLQKDYYPINESLASLPLRVSFCPLSLWRWQLYA 319
>ref|XP_541570.2| PREDICTED: similar to cleft lip and palate associated transmembrane
protein 1 isoform 1 [Canis familiaris].
Length = 673
Score = 549 bits (1415), Expect = e-156
Identities = 262/296 (88%), Positives = 263/296 (88%)
Frame = +3
Query: 105 QVTSNGSIGRDXXXXXXXXXXXXXXXXXXWQVIKGVLFRIFIIWAISSWFRRXXXXXXXX 284
QVTSNGSIGRD WQVIKGVLFRIFIIW +SSWFRR
Sbjct: 24 QVTSNGSIGRDPPAETQPQNPPPQPAPNAWQVIKGVLFRIFIIWVVSSWFRRGPAPQDQA 83
Query: 285 XXXXXXRVASRNLFPKDTLMNLHVYISEHEHFTDFNATSALFWEQHDLVYGDWTSGENSD 464
RVASRNLFPKDTLMNLHVYISEHEHFTDFNATSALFWEQHDLVYGDWTSGENSD
Sbjct: 84 GPGGAPRVASRNLFPKDTLMNLHVYISEHEHFTDFNATSALFWEQHDLVYGDWTSGENSD 143
Query: 465 GCYEHFAELDIPQSVQQNGSIYIHVYFTKSGFHPDPRQKALYRRLATVHMSRMINKYKRR 644
GCYEHFAELDIPQSVQQNGSIYIHVYFTKSGFHPDPRQKALYRRLATVHMSRMINKYKRR
Sbjct: 144 GCYEHFAELDIPQSVQQNGSIYIHVYFTKSGFHPDPRQKALYRRLATVHMSRMINKYKRR 203
Query: 645 RFQKTKNLLTGETEADPEMIKRAEDYGPVEVISHWHPNITINIVDDHTPWVKGSVPPPLD 824
RFQKTKNLLTGETEADPEMIKRAEDYGPVEVISHWHPNITINIVDDHTPWVKGSVPPPLD
Sbjct: 204 RFQKTKNLLTGETEADPEMIKRAEDYGPVEVISHWHPNITINIVDDHTPWVKGSVPPPLD 263
Query: 825 QYVKFDAVSGDYYPIIYFNDYWNLQKDYYPINESLASLPLRVSFCPLSLWRWQLYA 992
QYVKFDAVSGDYYPIIYFNDYWNLQKDYYPINESLASLPLRVSFCPLSLWRWQLYA
Sbjct: 264 QYVKFDAVSGDYYPIIYFNDYWNLQKDYYPINESLASLPLRVSFCPLSLWRWQLYA 319
>ref|XP_856612.1| PREDICTED: similar to cisplatin resistance related protein CRR9p
isoform 3 [Canis familiaris].
Length = 503
Score = 72.4 bits (176), Expect = 6e-13
Identities = 50/180 (27%), Positives = 86/180 (47%), Gaps = 7/180 (3%)
Frame = +3
Query: 471 YEHFAELDIPQSVQQNGSIYIHVYFTKSGFHP--DPRQKALYRRLATVHMSRMINKYKRR 644
+E + +P+ + NG++Y +++ +G P D +Q L L T + +
Sbjct: 86 FEKTVNVSVPKKTRNNGTLYAYIFLHHAGILPWHDGKQVHLVSPLTTYMVPK-------- 137
Query: 645 RFQKTKNLLTGETEADPEMIKRAEDYGPV---EVISHWHPNITINIVDDHTPWVKGSVPP 815
+ NLLTGE+ ++ AE P E +SHW P +T+N++ D + S+P
Sbjct: 138 --PEEVNLLTGESATQHQI--EAEKKPPSALDEPVSHWRPRLTLNVMVDDFVFDGASLPA 193
Query: 816 PLDQYVKFDAVSGD--YYPIIYFNDYWNLQKDYYPINESLASLPLRVSFCPLSLWRWQLY 989
+ +Y+K + Y PI++ + N KD IN S LPL VS+ +SL R + +
Sbjct: 194 DVHRYMKMIQLGKTVHYLPILFIDQLSNRVKDLMVINRSTTELPLTVSYDKISLGRLRFW 253
>ref|XP_535803.1| PREDICTED: similar to cisplatin resistance related protein CRR9p
isoform 1 [Canis familiaris].
Length = 539
Score = 72.4 bits (176), Expect = 6e-13
Identities = 50/180 (27%), Positives = 86/180 (47%), Gaps = 7/180 (3%)
Frame = +3
Query: 471 YEHFAELDIPQSVQQNGSIYIHVYFTKSGFHP--DPRQKALYRRLATVHMSRMINKYKRR 644
+E + +P+ + NG++Y +++ +G P D +Q L L T + +
Sbjct: 86 FEKTVNVSVPKKTRNNGTLYAYIFLHHAGILPWHDGKQVHLVSPLTTYMVPK-------- 137
Query: 645 RFQKTKNLLTGETEADPEMIKRAEDYGPV---EVISHWHPNITINIVDDHTPWVKGSVPP 815
+ NLLTGE+ ++ AE P E +SHW P +T+N++ D + S+P
Sbjct: 138 --PEEVNLLTGESATQHQI--EAEKKPPSALDEPVSHWRPRLTLNVMVDDFVFDGASLPA 193
Query: 816 PLDQYVKFDAVSGD--YYPIIYFNDYWNLQKDYYPINESLASLPLRVSFCPLSLWRWQLY 989
+ +Y+K + Y PI++ + N KD IN S LPL VS+ +SL R + +
Sbjct: 194 DVHRYMKMIQLGKTVHYLPILFIDQLSNRVKDLMVINRSTTELPLTVSYDKISLGRLRFW 253
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 25,512,231
Number of extensions: 544775
Number of successful extensions: 2016
Number of sequences better than 1.0e-05: 5
Number of HSP's gapped: 2009
Number of HSP's successfully gapped: 5
Length of query: 331
Length of database: 18,874,504
Length adjustment: 103
Effective length of query: 228
Effective length of database: 15,440,896
Effective search space: 3520524288
Effective search space used: 3520524288
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-004242
(993 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001285.1| cleft lip and palate transmembrane protein 1 [H... 551 e-157
Alignment gi|NP_110409.2| cleft lip and palate transmembrane protein 1-li... 73 5e-13
>ref|NP_001285.1| cleft lip and palate transmembrane protein 1 [Homo sapiens].
Length = 669
Score = 551 bits (1420), Expect = e-157
Identities = 264/296 (89%), Positives = 264/296 (89%)
Frame = +3
Query: 105 QVTSNGSIGRDXXXXXXXXXXXXXXXXXXWQVIKGVLFRIFIIWAISSWFRRXXXXXXXX 284
QVTSNGSIGRD WQVIKGVLFRIFIIWAISSWFRR
Sbjct: 24 QVTSNGSIGRDPPAETQPQNPPAQPAPNAWQVIKGVLFRIFIIWAISSWFRRGPAPQDQA 83
Query: 285 XXXXXXRVASRNLFPKDTLMNLHVYISEHEHFTDFNATSALFWEQHDLVYGDWTSGENSD 464
RVASRNLFPKDTLMNLHVYISEHEHFTDFNATSALFWEQHDLVYGDWTSGENSD
Sbjct: 84 GPGGAPRVASRNLFPKDTLMNLHVYISEHEHFTDFNATSALFWEQHDLVYGDWTSGENSD 143
Query: 465 GCYEHFAELDIPQSVQQNGSIYIHVYFTKSGFHPDPRQKALYRRLATVHMSRMINKYKRR 644
GCYEHFAELDIPQSVQQNGSIYIHVYFTKSGFHPDPRQKALYRRLATVHMSRMINKYKRR
Sbjct: 144 GCYEHFAELDIPQSVQQNGSIYIHVYFTKSGFHPDPRQKALYRRLATVHMSRMINKYKRR 203
Query: 645 RFQKTKNLLTGETEADPEMIKRAEDYGPVEVISHWHPNITINIVDDHTPWVKGSVPPPLD 824
RFQKTKNLLTGETEADPEMIKRAEDYGPVEVISHWHPNITINIVDDHTPWVKGSVPPPLD
Sbjct: 204 RFQKTKNLLTGETEADPEMIKRAEDYGPVEVISHWHPNITINIVDDHTPWVKGSVPPPLD 263
Query: 825 QYVKFDAVSGDYYPIIYFNDYWNLQKDYYPINESLASLPLRVSFCPLSLWRWQLYA 992
QYVKFDAVSGDYYPIIYFNDYWNLQKDYYPINESLASLPLRVSFCPLSLWRWQLYA
Sbjct: 264 QYVKFDAVSGDYYPIIYFNDYWNLQKDYYPINESLASLPLRVSFCPLSLWRWQLYA 319
>ref|NP_110409.2| cleft lip and palate transmembrane protein 1-like protein [Homo
sapiens].
Length = 538
Score = 72.8 bits (177), Expect = 5e-13
Identities = 46/177 (25%), Positives = 85/177 (48%), Gaps = 4/177 (2%)
Frame = +3
Query: 471 YEHFAELDIPQSVQQNGSIYIHVYFTKSGFHP--DPRQKALYRRLATVHMSRMINKYKRR 644
+E + +P+ + NG++Y +++ +G P D +Q L L T + +
Sbjct: 86 FERTVNVSVPKKTRNNGTLYAYIFLHHAGVLPWHDGKQVHLVSPLTTYMVPK-------- 137
Query: 645 RFQKTKNLLTGETEADPEMIKRAEDYGPVEVISHWHPNITINIVDDHTPWVKGSVPPPLD 824
+ NLLTGE++ ++ E +SHW P + +N++ D+ + S+P +
Sbjct: 138 --PEEINLLTGESDTQQIEAEKKPTSALDEPVSHWRPRLALNVMADNFVFDGSSLPADVH 195
Query: 825 QYVKFDAV--SGDYYPIIYFNDYWNLQKDYYPINESLASLPLRVSFCPLSLWRWQLY 989
+Y+K + + Y PI++ + N KD IN S LPL VS+ +SL R + +
Sbjct: 196 RYMKMIQLGKTVHYLPILFIDQLSNRVKDLMVINRSTTELPLTVSYDKVSLGRLRFW 252
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 25,058,951
Number of extensions: 536791
Number of successful extensions: 1795
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 1793
Number of HSP's successfully gapped: 2
Length of query: 331
Length of database: 18,297,164
Length adjustment: 103
Effective length of query: 228
Effective length of database: 14,901,872
Effective search space: 3397626816
Effective search space used: 3397626816
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-004242
(993 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_062623.2| cleft lip and palate transmembrane protein 1 ho... 551 e-157
Alignment gi|NP_666159.2| cleft lip and palate transmembrane protein 1-li... 74 2e-13
>ref|NP_062623.2| cleft lip and palate transmembrane protein 1 homolog [Mus
musculus].
Length = 664
Score = 551 bits (1420), Expect = e-157
Identities = 264/296 (89%), Positives = 264/296 (89%)
Frame = +3
Query: 105 QVTSNGSIGRDXXXXXXXXXXXXXXXXXXWQVIKGVLFRIFIIWAISSWFRRXXXXXXXX 284
QVTSNGSIGRD WQVIKGVLFRIFIIWAISSWFRR
Sbjct: 24 QVTSNGSIGRDTPAETQPQNPPPQPAPNAWQVIKGVLFRIFIIWAISSWFRRGPSPQDQS 83
Query: 285 XXXXXXRVASRNLFPKDTLMNLHVYISEHEHFTDFNATSALFWEQHDLVYGDWTSGENSD 464
RVASRNLFPKDTLMNLHVYISEHEHFTDFNATSALFWEQHDLVYGDWTSGENSD
Sbjct: 84 GPGGAPRVASRNLFPKDTLMNLHVYISEHEHFTDFNATSALFWEQHDLVYGDWTSGENSD 143
Query: 465 GCYEHFAELDIPQSVQQNGSIYIHVYFTKSGFHPDPRQKALYRRLATVHMSRMINKYKRR 644
GCYEHFAELDIPQSVQQNGSIYIHVYFTKSGFHPDPRQKALYRRLATVHMSRMINKYKRR
Sbjct: 144 GCYEHFAELDIPQSVQQNGSIYIHVYFTKSGFHPDPRQKALYRRLATVHMSRMINKYKRR 203
Query: 645 RFQKTKNLLTGETEADPEMIKRAEDYGPVEVISHWHPNITINIVDDHTPWVKGSVPPPLD 824
RFQKTKNLLTGETEADPEMIKRAEDYGPVEVISHWHPNITINIVDDHTPWVKGSVPPPLD
Sbjct: 204 RFQKTKNLLTGETEADPEMIKRAEDYGPVEVISHWHPNITINIVDDHTPWVKGSVPPPLD 263
Query: 825 QYVKFDAVSGDYYPIIYFNDYWNLQKDYYPINESLASLPLRVSFCPLSLWRWQLYA 992
QYVKFDAVSGDYYPIIYFNDYWNLQKDYYPINESLASLPLRVSFCPLSLWRWQLYA
Sbjct: 264 QYVKFDAVSGDYYPIIYFNDYWNLQKDYYPINESLASLPLRVSFCPLSLWRWQLYA 319
>ref|NP_666159.2| cleft lip and palate transmembrane protein 1-like protein [Mus
musculus].
Length = 539
Score = 73.6 bits (179), Expect = 2e-13
Identities = 48/181 (26%), Positives = 88/181 (48%), Gaps = 5/181 (2%)
Frame = +3
Query: 462 DGCYEHFAELDIPQSVQQNGSIYIHVYFTKSGFHP--DPRQKALYRRLATVHMSRMINKY 635
D +E + +P+ + NG++Y +++ +G P D +Q VH+ + Y
Sbjct: 83 DSKFERTVNVSVPKKTRNNGTLYAYIFLHHAGILPWQDGKQ---------VHVVSTLTTY 133
Query: 636 KRRRFQKTKNLLTGETEADPEMIKRAEDYGPV-EVISHWHPNITINIVDDHTPWVKGSVP 812
+ ++ NLLTGE+ ++ + + E +SHW P +T+N++ D + S+P
Sbjct: 134 MIPKPEEI-NLLTGESATQQQIEAEKKPSNALDEPVSHWRPRLTLNVMVDDFVFDGSSLP 192
Query: 813 PPLDQYVKFDAVSGD--YYPIIYFNDYWNLQKDYYPINESLASLPLRVSFCPLSLWRWQL 986
+ +Y+K + Y PI++ + N KD IN S LPL VS+ +SL R +
Sbjct: 193 ADVHRYMKMIQLGKTVHYLPILFIDQLSNRVKDLMVINRSTTELPLTVSYDKISLGRLRF 252
Query: 987 Y 989
+
Sbjct: 253 W 253
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 21,194,233
Number of extensions: 447898
Number of successful extensions: 1382
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 1380
Number of HSP's successfully gapped: 2
Length of query: 331
Length of database: 15,617,559
Length adjustment: 102
Effective length of query: 229
Effective length of database: 12,553,887
Effective search space: 2874840123
Effective search space used: 2874840123
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-004242
(993 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_003127271.2| PREDICTED: cleft lip and palate transmembran... 537 e-153
Alignment gi|XP_003359904.1| PREDICTED: hypothetical protein LOC100621084... 55 6e-08
>ref|XP_003127271.2| PREDICTED: cleft lip and palate transmembrane protein 1 [Sus
scrofa].
Length = 637
Score = 537 bits (1383), Expect = e-153
Identities = 253/267 (94%), Positives = 253/267 (94%)
Frame = +3
Query: 192 WQVIKGVLFRIFIIWAISSWFRRXXXXXXXXXXXXXXRVASRNLFPKDTLMNLHVYISEH 371
WQVIKGVLFRIFIIWAISSWFRR RVASRNLFPKDTLMNLHVYISEH
Sbjct: 26 WQVIKGVLFRIFIIWAISSWFRRGPAPQDQAGPGGAPRVASRNLFPKDTLMNLHVYISEH 85
Query: 372 EHFTDFNATSALFWEQHDLVYGDWTSGENSDGCYEHFAELDIPQSVQQNGSIYIHVYFTK 551
EHFTDFNATSALFWEQHDLVYGDWTSGENSDGCYEHFAELDIPQSVQQNGSIYIHVYFTK
Sbjct: 86 EHFTDFNATSALFWEQHDLVYGDWTSGENSDGCYEHFAELDIPQSVQQNGSIYIHVYFTK 145
Query: 552 SGFHPDPRQKALYRRLATVHMSRMINKYKRRRFQKTKNLLTGETEADPEMIKRAEDYGPV 731
SGFHPDPRQKALYRRLATVHMSRMINKYKRRRFQKTKNLLTGETEADPEMIKRAEDYGPV
Sbjct: 146 SGFHPDPRQKALYRRLATVHMSRMINKYKRRRFQKTKNLLTGETEADPEMIKRAEDYGPV 205
Query: 732 EVISHWHPNITINIVDDHTPWVKGSVPPPLDQYVKFDAVSGDYYPIIYFNDYWNLQKDYY 911
EVISHWHPNITINIVDDHTPWVKGSVPPPLDQYVKFDAVSGDYYPIIYFNDYWNLQKDYY
Sbjct: 206 EVISHWHPNITINIVDDHTPWVKGSVPPPLDQYVKFDAVSGDYYPIIYFNDYWNLQKDYY 265
Query: 912 PINESLASLPLRVSFCPLSLWRWQLYA 992
PINESLASLPLRVSFCPLSLWRWQLYA
Sbjct: 266 PINESLASLPLRVSFCPLSLWRWQLYA 292
>ref|XP_003359904.1| PREDICTED: hypothetical protein LOC100621084, partial [Sus scrofa].
Length = 664
Score = 55.1 bits (131), Expect = 6e-08
Identities = 29/88 (32%), Positives = 48/88 (54%), Gaps = 2/88 (2%)
Frame = +3
Query: 732 EVISHWHPNITINIVDDHTPWVKGSVPPPLDQYVKFDAVSGD--YYPIIYFNDYWNLQKD 905
E +SHW P +T+N++ D + ++P + +Y+K + Y PI++ + N KD
Sbjct: 46 EPVSHWRPRLTLNVMVDDFVFDGAALPADVHRYMKMVQLGKTVHYLPILFIDQLSNRVKD 105
Query: 906 YYPINESLASLPLRVSFCPLSLWRWQLY 989
IN S A LPL VS+ +SL R + +
Sbjct: 106 LMVINRSTAELPLTVSYDKISLGRLRFW 133
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 15,777,040
Number of extensions: 338127
Number of successful extensions: 1108
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 1106
Number of HSP's successfully gapped: 2
Length of query: 331
Length of database: 11,343,932
Length adjustment: 99
Effective length of query: 232
Effective length of database: 8,879,129
Effective search space: 2059957928
Effective search space used: 2059957928
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-004242
(993 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr06 319 2e-84
>Sscrofa_Chr06
|| Length = 157765593
Score = 319 bits (161), Expect = 2e-84
Identities = 164/165 (99%)
Strand = Plus / Plus
Query: 829 acgtgaagtttgacgcggtgagcggtgactactaccccatcatctacttcaatgactact 888
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 47317750 acgtgaagtttgacgcggtgagcggtgactactaccccatcatctacttcaatgactact 47317809
Query: 889 ggaacctgcagaaggactactaccccatcaatgagagtctggccagcctgccgctccgcg 948
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 47317810 ggaacctgcagaaggactactaccccatcaatgagagtctggccagcctgccgctccgcg 47317869
Query: 949 tctccttctgcccgctctcgctctggcgctggcagctctacgccg 993
||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 47317870 tctccttctgcccgctctcactctggcgctggcagctctacgccg 47317914
Score = 317 bits (160), Expect = 6e-84
Identities = 160/160 (100%)
Strand = Plus / Plus
Query: 344 gaacctgcacgtgtacatctcagagcacgagcactttacagacttcaatgccacgtcggc 403
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 47308163 gaacctgcacgtgtacatctcagagcacgagcactttacagacttcaatgccacgtcggc 47308222
Query: 404 gctcttctgggagcagcacgacctcgtgtatggcgactggactagcggcgagaactcaga 463
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 47308223 gctcttctgggagcagcacgacctcgtgtatggcgactggactagcggcgagaactcaga 47308282
Query: 464 tggctgctacgagcacttcgccgagctcgacattccacag 503
||||||||||||||||||||||||||||||||||||||||
Sbjct: 47308283 tggctgctacgagcacttcgccgagctcgacattccacag 47308322
Score = 252 bits (127), Expect = 3e-64
Identities = 127/127 (100%)
Strand = Plus / Plus
Query: 218 caggatcttcatcatctgggccatcagcagctggttccgcagagggccagcccctcagga 277
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 47306140 caggatcttcatcatctgggccatcagcagctggttccgcagagggccagcccctcagga 47306199
Query: 278 ccaggcgggccccggaggagccccacgcgtcgccagccgcaacctgttccccaaagacac 337
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 47306200 ccaggcgggccccggaggagccccacgcgtcgccagccgcaacctgttccccaaagacac 47306259
Query: 338 tttaatg 344
|||||||
Sbjct: 47306260 tttaatg 47306266
Score = 244 bits (123), Expect = 8e-62
Identities = 123/123 (100%)
Strand = Plus / Plus
Query: 706 agagggccgaggactacgggcctgtggaggtgatctcccactggcaccccaacatcacca 765
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 47316896 agagggccgaggactacgggcctgtggaggtgatctcccactggcaccccaacatcacca 47316955
Query: 766 tcaacatcgtggacgaccacacgccgtgggtgaagggcagcgtgcctccgcccctggacc 825
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 47316956 tcaacatcgtggacgaccacacgccgtgggtgaagggcagcgtgcctccgcccctggacc 47317015
Query: 826 agt 828
|||
Sbjct: 47317016 agt 47317018
Score = 240 bits (121), Expect = 1e-60
Identities = 121/121 (100%)
Strand = Plus / Plus
Query: 501 cagagtgtccagcagaacggctccatctacatccacgtctacttcaccaagagtggcttc 560
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 47311342 cagagtgtccagcagaacggctccatctacatccacgtctacttcaccaagagtggcttc 47311401
Query: 561 cacccggacccccggcagaaggcgctgtaccgccggctcgccacagtccacatgtctcgg 620
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 47311402 cacccggacccccggcagaaggcgctgtaccgccggctcgccacagtccacatgtctcgg 47311461
Query: 621 a 621
|
Sbjct: 47311462 a 47311462
Score = 170 bits (86), Expect = 9e-40
Identities = 86/86 (100%)
Strand = Plus / Plus
Query: 622 tgatcaacaaatacaagcgccggcggtttcagaaaaccaagaacctgttgacgggagaga 681
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 47316100 tgatcaacaaatacaagcgccggcggtttcagaaaaccaagaacctgttgacgggagaga 47316159
Query: 682 cagaagctgacccagaaatgatcaag 707
||||||||||||||||||||||||||
Sbjct: 47316160 cagaagctgacccagaaatgatcaag 47316185
Score = 153 bits (77), Expect = 2e-34
Identities = 106/118 (89%), Gaps = 1/118 (0%)
Strand = Plus / Plus
Query: 105 caggtgaccagcaatggcagcatcgggagggac-ccgccggcagagacccagccccagaa 163
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 47300083 caggtgaccagcaatggcagcatcgggagggacgccgccggcagagacccagccccagaa 47300142
Query: 164 nnnnnnnnnnnagccagcacccaacgcctggcaggtcatcaaaggcgtgctgttcagg 221
|||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 47300143 cccccccccccagccagcacccaacgcctggcaggtcatcaaaggcgtgctgttcagg 47300200
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 18,874,335
Number of extensions: 97
Number of successful extensions: 97
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 96
Number of HSP's successfully gapped: 8
Length of query: 993
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 972
Effective length of database: 2,808,413,156
Effective search space: 2729777587632
Effective search space used: 2729777587632
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 29 (58.0 bits)